CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028189	Staphylococcus aureus strain CFSAN018750 chromosome, complete genome	4 crisprs	DEDDh,DinG,cas3,csa3,WYL	3	3	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP028189_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028189_1

616275-616362

Orphan

Consensus_repeat	Method
CTTTTCGTCAGCTTCTATGTTGGGGCCCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028189_1

>merge|CP028189|1|616275-616362|CRISPRCasFinder
CTTTTCGTCAGCTTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCA

>CP028189|1|1|616275-616362|CRISPRCasFinder
CTTTTCGTCAGCTTCTATGTTGGGGCCCCA	CCCCAACTTGCACATTATAGTAAGCTGA
CTTTTCGTCAGCTTCTGTGTTGGGGCCCCA

Protein	Signature genes	Signature genes Name	Protein_function
CP028189.1\|AVS40429.1\|622754_623441_-\|ComEA-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|224472
CP028189.1\|AVS42389.1\|605455_606139_-\|serine-protease	unknown	unknown	gnl\|CDD\|223961
CP028189.1\|AVS40427.1\|619995_622143_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|225212
CP028189.1\|AVS40433.1\|625127_625697_-\|nicotinate-nicotinamide-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|273101
CP028189.1\|AVS40425.1\|618668_618920_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
CP028189.1\|AVS40415.1\|606382_606559_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP028189.1\|AVS40423.1\|614812_615937_-\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
CP028189.1\|AVS40418.1\|608958_609897_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
CP028189.1\|AVS40430.1\|623480_624197_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
CP028189.1\|AVS40420.1\|611175_613008_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
CP028189.1\|AVS40431.1\|624199_624553_-\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
CP028189.1\|AVS40422.1\|613734_614712_-\|HrcA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273017
CP028189.1\|AVS40417.1\|608204_608957_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|224303
CP028189.1\|AVS40419.1\|609900_611040_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237656
CP028189.1\|AVS40421.1\|613076_613703_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237622
CP028189.1\|AVS40426.1\|618964_619939_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
CP028189.1\|AVS40428.1\|622201_622663_-\|ComE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622
CP028189.1\|AVS40432.1\|624553_625138_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627
CP028189.1\|AVS40416.1\|606851_608198_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
CP028189.1\|AVS40424.1\|616499_618323_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462

Protein	Function_ID	Function_description	E-value
CP028189.1\|AVS40429.1\|622754_623441_-\|ComEA-family-DNA-binding-protein	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	2.53337e-32
CP028189.1\|AVS42389.1\|605455_606139_-\|serine-protease	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	8.78003e-63
CP028189.1\|AVS40427.1\|619995_622143_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	1.36441e-90
CP028189.1\|AVS40433.1\|625127_625697_-\|nicotinate-nicotinamide-nucleotide-adenylyltransferase	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	1.98239e-76
CP028189.1\|AVS40425.1\|618668_618920_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17
CP028189.1\|AVS40415.1\|606382_606559_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10
CP028189.1\|AVS40423.1\|614812_615937_-\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
CP028189.1\|AVS40418.1\|608958_609897_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	9.7051e-134
CP028189.1\|AVS40430.1\|623480_624197_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.00559e-15
CP028189.1\|AVS40420.1\|611175_613008_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
CP028189.1\|AVS40431.1\|624199_624553_-\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.95861e-47
CP028189.1\|AVS40422.1\|613734_614712_-\|HrcA-family-transcriptional-regulator	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	2.05887e-119
CP028189.1\|AVS40417.1\|608204_608957_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.46402e-91
CP028189.1\|AVS40419.1\|609900_611040_-\|molecular-chaperone-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
CP028189.1\|AVS40421.1\|613076_613703_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	3.74407e-81
CP028189.1\|AVS40426.1\|618964_619939_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	4.1415e-104
CP028189.1\|AVS40428.1\|622201_622663_-\|ComE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	4.81051e-102
CP028189.1\|AVS40432.1\|624553_625138_-\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	8.54529e-80
CP028189.1\|AVS40416.1\|606851_608198_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
CP028189.1\|AVS40424.1\|616499_618323_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0

>CP028189.1|AVS40423.1|614812_615937_-|oxygen-independent-coproporphyrinogen-III-oxidase
MTVQSAYIHIPFCVRICTYCDFNKYFIQNQPVDEYLDALITEMSTAKYRNLKTMYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLLMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFGQTINNLKEKELIVEKNDAIALTKRGKVIGNEVFEAFLIND
>CP028189.1|AVS40422.1|613734_614712_-|HrcA-family-transcriptional-regulator
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>CP028189.1|AVS40421.1|613076_613703_-|nucleotide-exchange-factor-GrpE
MTNKDESVEKNTESTVEETNIKQNIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>CP028189.1|AVS40420.1|611175_613008_-|molecular-chaperone-DnaK
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>CP028189.1|AVS40419.1|609900_611040_-|molecular-chaperone-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>CP028189.1|AVS40418.1|608958_609897_-|50S-ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDELDQHNIQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>CP028189.1|AVS40417.1|608204_608957_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSAISYEKELMG
>CP028189.1|AVS40416.1|606851_608198_-|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>CP028189.1|AVS40415.1|606382_606559_-|30S-ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>CP028189.1|AVS42389.1|605455_606139_-|serine-protease
MTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGMILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD
>CP028189.1|AVS40424.1|616499_618323_-|elongation-factor-4
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELMPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>CP028189.1|AVS40425.1|618668_618920_+|30S-ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>CP028189.1|AVS40426.1|618964_619939_-|DNA-polymerase-III-subunit-delta
MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIVDACAETDYKLKSSYMDKQLILELFILSL
>CP028189.1|AVS40427.1|619995_622143_-|DNA-internalization-related-competence-protein-ComEC/Rec2
MLSTFLFILLLYIAYRKNKIVYAPTSLFLIIFSSWYLHYSQQAIFNYINYIERTSQFNERAQVIQIQRQDSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNENKFVTLKLQSIVVQSCLESNRSNLIEKHKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGITIIVLTLFAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIIFIISVYYIFWLLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSSNTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSNSYGNASGL
>CP028189.1|AVS40428.1|622201_622663_-|ComE-operon-protein-2
MERIKWEEYFMAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>CP028189.1|AVS40429.1|622754_623441_-|ComEA-family-DNA-binding-protein
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT
>CP028189.1|AVS40430.1|623480_624197_-|class-I-SAM-dependent-methyltransferase
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESKILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDAERLFFIAKK
>CP028189.1|AVS40431.1|624199_624553_-|ribosome-silencing-factor
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>CP028189.1|AVS40432.1|624553_625138_-|HD-domain-containing-protein
MNIEKAKRLAKEKLPEKRYNHSLRVSETAIKLAEIYDGDTSKVELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>CP028189.1|AVS40433.1|625127_625697_-|nicotinate-nicotinamide-nucleotide-adenylyltransferase
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH

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Crispr_ID: CP028189_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028189_3

899496-899623

Orphan

Consensus_repeat	Method
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028189_3

>merge|CP028189|3|899496-899623|CRISPRCasFinder
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTCATTCCAGGAAGGAATGTATTCTAAGAGTTGAAATACTCCCGCATTATTATTAAATTATGGAGCGGAAGATAGGATTTGCACCTATACCTC

>CP028189|3|3|899496-899623|CRISPRCasFinder
AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	ATTCCAGGAAGGAATGTATTCTAAGAGTTGAAATACTCCCGCATTATTATTA
AATTATGGAGCGGAAGATAGGATTTGCACCTATACCTC

Protein	Signature genes	Signature genes Name	Protein_function
CP028189.1\|AVS40690.1\|912413_912506_-\|hypothetical-protein	unknown	unknown	unknown
CP028189.1\|AVS40689.1\|909647_910937_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|183493
CP028189.1\|AVS40683.1\|895339_896068_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
CP028189.1\|AVS40694.1\|916574_917552_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
CP028189.1\|AVS40680.1\|892828_893428_-\|glucosamine-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|223440
CP028189.1\|AVS40682.1\|894061_895204_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
CP028189.1\|AVS40687.1\|908155_909106_-\|hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240632
CP028189.1\|AVS40681.1\|893586_894057_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	unknown	unknown	gnl\|CDD\|223297
CP028189.1\|AVS40693.1\|915385_916423_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
CP028189.1\|AVS40686.1\|907612_908059_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
CP028189.1\|AVS40676.1\|891420_891816_-\|hypothetical-protein	unknown	unknown	unknown
CP028189.1\|AVS40692.1\|914541_915084_-\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|184219
CP028189.1\|AVS40691.1\|912514_914251_-\|SAV1866-family-putative-multidrug-efflux-ABC-transporter	unknown	unknown	gnl\|CDD\|224055
CP028189.1\|AVS40679.1\|892651_892804_-\|hypothetical-protein	unknown	unknown	unknown
CP028189.1\|AVS42399.1\|911229_912324_+\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
CP028189.1\|AVS40688.1\|909111_909567_-\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|224146
CP028189.1\|AVS40678.1\|892380_892587_+\|hypothetical-protein	unknown	unknown	unknown
CP028189.1\|AVS40684.1\|896054_897512_-\|glutamate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
CP028189.1\|AVS40685.1\|897769_898831_-\|PTS-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226167
CP028189.1\|AVS40677.1\|892123_892288_+\|nitrogen-fixation-protein-NifR	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP028189.1\|AVS40689.1\|909647_910937_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|183493	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional.	0
CP028189.1\|AVS40683.1\|895339_896068_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.22702e-152
CP028189.1\|AVS40694.1\|916574_917552_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	2.87563e-40
CP028189.1\|AVS40680.1\|892828_893428_-\|glucosamine-6-phosphate-isomerase	gnl\|CDD\|223440	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism].	3.00876e-10
CP028189.1\|AVS40682.1\|894061_895204_-\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	3.39268e-179
CP028189.1\|AVS40681.1\|893586_894057_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.70324e-88
CP028189.1\|AVS40693.1\|915385_916423_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.36048e-156
CP028189.1\|AVS40687.1\|908155_909106_-\|hydroxyacid-dehydrogenase	gnl\|CDD\|240632	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family. Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	3.86096e-136
CP028189.1\|AVS40692.1\|914541_915084_-\|DUF402-domain-containing-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	1.12131e-126
CP028189.1\|AVS40691.1\|912514_914251_-\|SAV1866-family-putative-multidrug-efflux-ABC-transporter	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
CP028189.1\|AVS40686.1\|907612_908059_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	6.09298e-56
CP028189.1\|AVS42399.1\|911229_912324_+\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.5476e-86
CP028189.1\|AVS40688.1\|909111_909567_-\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.44283e-68
CP028189.1\|AVS40684.1\|896054_897512_-\|glutamate-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.94164e-98
CP028189.1\|AVS40685.1\|897769_898831_-\|PTS-transporter-subunit-IIC	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	2.31644e-122

>CP028189.1|AVS40685.1|897769_898831_-|PTS-transporter-subunit-IIC
MSNANNADNKQFFSKILNSIGAGVVIALVPNALLGEVLKIFKSGNEILELTYQLVILIQSFMAFIIGVLAAHQFKFNGAGAAIVGTSAMIGSGAVVYSNNSFMLKGIGDIINTSLVVIIACLIYMVLQNKLGSFELIILPVLVPIVSGGIGLITLPYIRKITQAIGNVIHSFTDLNPLLMSILISVAFSLLMVTPISLVAIATAISLNGLGSGAANLGIVAACVTFLFGSLRVNSIGVNAVLLIGAAKMMIPVYLKNLIISIPLTINGIITGIIAYVLQVKGTPLSAGFGYTGLVGPINAFNRMSGDPTMNIILLALGYFVIPFVSAFIVHELCKKFIPIYSNDIYKFEVPKQ
>CP028189.1|AVS40684.1|896054_897512_-|glutamate-ABC-transporter-permease
MKCLIRFILVLGLLISSAMVYINPTAHAEQDQTWEKIKERGELRVGLSADYAPMEFEHTVNGKTEYAGVDIDLAKKIAKDNNLKLKIVNMSFDSLLGALKTGKIDIIISGMTSTPERKKQVDFSDSYMMTKNIMLVKKDKVNEYKDIKDFNNKKVGAQKGTEQEKIAQTEIENASITSLSRLPDVILALKSGKVEGAVVEKPVAEAYLKQNPKLGISNVKFNEEEKDTVIAVPKDSPKLLSQINKTIKEVKDKGLIDKYMTNAANAMNDDSGFISKYGSFFLKGIKITILISLIGVALGSILGAFVALMKLSKIKIISWIASIYIEILRGTPMLVQVFIVFFGITAALGLDISALVCGTIALVINSSAYIAEIIRAGINAVDKGQMEAARSLGLNYRQTMKSVIMPQAIKNILPALGNEFVTLIKESSIVSTIGVGEIMFNAQVVQGISFDPFTPLLVAAALYFVLTFVLTRIMNMIEGRLNASD
>CP028189.1|AVS40683.1|895339_896068_-|amino-acid-ABC-transporter-ATP-binding-protein
MPVIKINNLNKVFGDNEVLKDINLEINQGEVVAIIGPSGSGKSTLLRCMNLLEVPTKGQVIFEGNDLTEKGTQVDKLRQKMGMVFQNFNLFPHKKVVDNIILAPKLLKKDNNDELHKEALSLLDKVGLKEKADVYPNQLSGGQKQRVAIARALAMHPDVILFDEPTSALDPEVVGDVLKVMKDLAKEGMTMVVVTHEMGFAKDVSDKVIFMADGVVVESGTPVEIFEQPQHERTQNFLARVL
>CP028189.1|AVS40682.1|894061_895204_-|tRNA-epoxyqueuosine(34)-reductase-QueG
MGGIRLDTKQLKQDIIDYAYTIGIDSIGFTTADPFDELKQNLEAYHANGYASGFEESDIALRTEPKLSLPTARSIIAIAVGYPNKLKGAPKSVRGDRRGLFARASWGQDYHTIMRKRLDMLASFIESKVPDVEIKSMVDTGVLSDRAVAERAGLGFVGRNGFVINPKLGTWTYLGEMLVSIPFEPDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFLTQTKGYMPDQYRYKIGNRLYGCDTCQQVCPKNRGINTEQDDIILEPEILKPRLVPLLRMSNKEFKQTYGHLAGTWRGKKPIQRNAILALAHFNEVDAIPELKKVATTDERPMIRATAYWAIGQILGEEARDFINANYDQEDAEVQNEMIKGLDTRRE
>CP028189.1|AVS40681.1|893586_894057_-|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL
MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN
>CP028189.1|AVS40680.1|892828_893428_-|glucosamine-6-phosphate-isomerase
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNVEKYAVDFSQINILDYDDKKSYFEALGVPAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGKTSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA
>CP028189.1|AVS40679.1|892651_892804_-|hypothetical-protein
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ
>CP028189.1|AVS40678.1|892380_892587_+|hypothetical-protein
MVESQLKITCKLAGPQHRKIGSSISTNNVSWGNSPNTETGRKSASMNIIKKLGNKMLPNFIFKIINPI
>CP028189.1|AVS40677.1|892123_892288_+|nitrogen-fixation-protein-NifR
MARPQHSEIGFLISTNSASWGGHNIEKLDPQFLQTMQVGETGHKLRNWWKVSLK
>CP028189.1|AVS40676.1|891420_891816_-|hypothetical-protein
MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPVIFKVIKLQLNLSKGLIDDVNAQTFIKSNQSGIVISVICCLLITGILYYTLDGFYASLTGVLGTLVALNPYTTIVSAVLYILTAIATVEATKTKYRN
>CP028189.1|AVS40686.1|907612_908059_-|transcriptional-repressor
MSVEIESIEHELEESIASLRQAGVRITPQRQAILRYLISSHTHPTADEIYQALSPDFPNISVATIYNNLRVFKDIGIVKELTYGDSSSRFDFNTHNHYHIICEQCGKIVDFQYPQLNEIERLAQHMTDFDVTHHRMEIYGVCKECQDK
>CP028189.1|AVS40687.1|908155_909106_-|hydroxyacid-dehydrogenase
MKVVGLNRMREVETELQQRFSDLDFKFYKKASEIPESDLADLDILVGYDGGINEAFLRRCPNLKWIAWFATGVNTLPLDYIADHGILLTNGKGVQAKQLSEYILAFILDDYKKMKLSYDNQRQHIYDSKITGKRLSGQTVLFLGTGAIATRTAKLAKAFNMNLIGLSKSGQNKDEFDEIYTIESLESTLPNADIIINALPETQETIHLLKKKHFELMKDEALFINIGRGSIVKEALLIEVLKSKVIRHAYLDVFENEPLKPNHELYELENVTITAHITGNDYEAKYDLLDIFKNNLVNFLNKNGLIENEVDTKKGY
>CP028189.1|AVS40688.1|909111_909567_-|thioredoxin-dependent-thiol-peroxidase
MLQKGEQFPIFKLENQDGTVITNDTLKGKKAIIYFYPRDNTPTCTTEACDFRDNLEMFNDLDVAVYGISGDSKKKHQNFIEKHGLNFDLLVDEDFKLAKETGVYQLKKSFGKESMGIVRTTFIIDEQGKVLDVIEKVKVKTQIEELKNILG
>CP028189.1|AVS40689.1|909647_910937_+|glutamate-1-semialdehyde-2,1-aminomutase
MNFSESERLQQLSNEYILGGVNSPSRSYKAVGGGAPVVMKEGHGAYLYDVDGNKFIDYLQAYGPIITGHAHPHITKAIQEQAAKGVLFGTPTELEIEFSKKLRDAIPSLEKIRFVNSGTEAVMTTIRVARAYTKRNKIIKFAGSYHGHSDLVLVAAGSGPSQLGSPDSAGVPESVAREVITVPFNDINAYKEAIEFWGDEIAAVLVEPIVGNFGMVMPQPGFLEEVNEISHNNGTLVIYDEVITAFRFHYGAAQDLLGVIPDLTAFGKIVGGGLPIGGYGGRQDIMEQVAPLGPAYQAGTMAGNPLSMKAGIALLEVLEQDGVYEKLDSLGQQLEEGLLKLIEKHNITATINRIYGSLTLYFTDEKVTHYDQVEHSDGEAFGKFFKLMLNQGINLAPSKFEAWFLTTEHTEEDIKQTLKAADYAFSQMK
>CP028189.1|AVS42399.1|911229_912324_+|aromatic-acid-exporter-family-protein
MRLGARIFKTGIAIILAMSIASLLPDDVGLKALAGVSAVVAMQPSIYRSFKTVSDQALGNIIGAILSVTMVTIFSDNFIIMGVTVIVLIAILFKFNLAHVATLASVTALIIMGQHTGSFYITAFYRFVLVMIGVISSSLVNFVFLPPKFETKIYYNSLNISSDIFMWFKLVLNDTTEFNNIKQDSHNLKQRVEKLEKIYDYYSEERPITKKHIHQQNRKKILFREVVQTTRQAYEVLNKLSRYQNDLYLLNNNFLLQIKLDLDSLTAFHEQILASLSKKARYNVTHVDYELDNPQKKDLLSTFQHELINHPYQTEYSFANVMQIVAAIEEYRHHLEHLDRIRISFFTYHRSDADIEIVEEDFDL
>CP028189.1|AVS40690.1|912413_912506_-|hypothetical-protein
MFDFSTILKRKFVTGWWGHNIEKAVRDFLN
>CP028189.1|AVS40691.1|912514_914251_-|SAV1866-family-putative-multidrug-efflux-ABC-transporter
MIKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELMSKQGAYEHLYSIQNL
>CP028189.1|AVS40692.1|914541_915084_-|DUF402-domain-containing-protein
MVRESIPKEGENIKIQSYKHDGKIHRVWSETTILKGTDHVVIGGNDHTLVTESDGRTWITREPAIVYFHSEYWFNVICMFREDGIYYYCNLSSPFVCDEEALKYIDYDLDIKVYPNGKYHLLDEDEYEQHMNQMNYPHDIDIILRRNVDILQQWIEQKKGPFAPDFIKVWKERYKKIRQY
>CP028189.1|AVS40693.1|915385_916423_-|A/G-specific-adenine-glycosylase
MYQQSSFKENLIHWFDENQREMPWRQTTNPYYIWLSEVMLQQTQVKTVIDYYHRFVERFPTVEVLSQASEDEVLKYWEGLGYYSRARNFHTAIKEVHDKYEGLVPKDPDQFKALKGVGPYTQAAVMSIAYNVPLATVDGNVFRVWSRLNDDYRDIKLQSTRKSYEQELLPYVTTEAGTFNQAMMELGALICTPKNPLCLFCPVQENCEAFDKGTFEKLPVKSKNVSKKVIEQSVFLIRNNQGQYLLQKRSEKLLHGMWQFPMFESEHARRKMTEKIGHDIQPVETPIFELKHQFTHLTWKIKVYAVSGAINIETLPDDMIWFDLSDRDQYTFPVPMSKIYQFING
>CP028189.1|AVS40694.1|916574_917552_+|metal-dependent-hydrolase
MDTATHIAIGVGLTALATQDPAMASTFGATATTLIVGSLIPDGDTVLKLKDNATYISHHRGITHSIPFTILWPILITFLIFTFFSGTNPFHVWMWAQLAVFLHVFVDIFNSYGTQALRPITNKWIQLSVINTFDPIIFTVLCIGIVLWVIGLHPFAVFFPIIALLIIYYMIRFKMRAVIKQQALKAIQQEHHPVKVFVAPTIKFMEWRVAIQTDAHDYVGKAYGRNVVFSDKVERQTLSTDSILWKVKGNKDIRTFLNFSSIYRWQTTTLADGSTEIRLIDLRYLKNDHYSFVAIAHVTNDNVIDHSYIGWVFTEDKLQRKLYAK

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Crispr_ID: CP028189_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028189_4

1126511-1126600

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP028189_4

>merge|CP028189|4|1126511-1126600|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCT

>CP028189|4|4|1126511-1126600|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTT
CAACTTTAGTTGTTAGGGGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP028189.1\|AVS40901.1\|1126935_1127040_-\|hypothetical-protein	unknown	unknown	unknown
CP028189.1\|AVS40903.1\|1127719_1127878_+\|integrase	unknown	unknown	unknown
CP028189.1\|AVS40902.1\|1127472_1127655_-\|hypothetical-protein	unknown	unknown	unknown
CP028189.1\|AVS40897.1\|1123017_1123683_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
CP028189.1\|AVS40896.1\|1121643_1122582_-\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
CP028189.1\|AVS40907.1\|1130474_1132280_-\|glutamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
CP028189.1\|AVS40898.1\|1123834_1124155_+\|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP028189.1\|AVS40899.1\|1124156_1125137_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
CP028189.1\|AVS40910.1\|1136677_1137112_+\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP028189.1\|AVS40892.1\|1117824_1118268_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
CP028189.1\|AVS40909.1\|1134533_1136666_+\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226234
CP028189.1\|AVS40895.1\|1121382_1121613_-\|hypothetical-protein	unknown	unknown	unknown
CP028189.1\|AVS40906.1\|1129460_1130243_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
CP028189.1\|AVS40894.1\|1119337_1120711_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
CP028189.1\|AVS40900.1\|1125402_1126494_+\|transcriptional-regulator	unknown	unknown	unknown
CP028189.1\|AVS40904.1\|1128313_1128406_+\|erm-Leader-peptide	unknown	unknown	unknown
CP028189.1\|AVS40893.1\|1118467_1118881_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
CP028189.1\|AVS40891.1\|1116993_1117704_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP028189.1\|AVS40908.1\|1132960_1134499_+\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
CP028189.1\|AVS40905.1\|1128535_1129393_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635

Protein	Function_ID	Function_description	E-value
CP028189.1\|AVS40907.1\|1130474_1132280_-\|glutamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP028189.1\|AVS40897.1\|1123017_1123683_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
CP028189.1\|AVS40896.1\|1121643_1122582_-\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP028189.1\|AVS40898.1\|1123834_1124155_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
CP028189.1\|AVS40899.1\|1124156_1125137_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.20197e-108
CP028189.1\|AVS40910.1\|1136677_1137112_+\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP028189.1\|AVS40892.1\|1117824_1118268_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
CP028189.1\|AVS40909.1\|1134533_1136666_+\|PRD-domain-containing-protein	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.17174e-68
CP028189.1\|AVS40906.1\|1129460_1130243_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	8.27306e-106
CP028189.1\|AVS40894.1\|1119337_1120711_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
CP028189.1\|AVS40893.1\|1118467_1118881_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
CP028189.1\|AVS40891.1\|1116993_1117704_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP028189.1\|AVS40908.1\|1132960_1134499_+\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP028189.1\|AVS40905.1\|1128535_1129393_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	5.00207e-59

>CP028189.1|AVS40900.1|1125402_1126494_+|transcriptional-regulator
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYVQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKETTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP028189.1|AVS40899.1|1124156_1125137_+|cation-transporter
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHAH
>CP028189.1|AVS40898.1|1123834_1124155_+|ArsR-family-transcriptional-regulator
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP028189.1|AVS40897.1|1123017_1123683_-|SDR-family-NAD(P)-dependent-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>CP028189.1|AVS40896.1|1121643_1122582_-|class-I-mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP028189.1|AVS40895.1|1121382_1121613_-|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP028189.1|AVS40894.1|1119337_1120711_-|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP028189.1|AVS40893.1|1118467_1118881_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP028189.1|AVS40892.1|1117824_1118268_-|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP028189.1|AVS40891.1|1116993_1117704_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>CP028189.1|AVS40901.1|1126935_1127040_-|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>CP028189.1|AVS40902.1|1127472_1127655_-|hypothetical-protein
MIIFRFKVNAFFPVKLCLMIRFCLESCCIFRRHLLITFHNIRSKFIMFKYISSKCIICTG
>CP028189.1|AVS40903.1|1127719_1127878_+|integrase
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>CP028189.1|AVS40904.1|1128313_1128406_+|erm-Leader-peptide
MTYGSIVAILCALFVIFFIPYMEKKDKKKK
>CP028189.1|AVS40905.1|1128535_1129393_-|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITTFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIEHFGIHQDETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>CP028189.1|AVS40906.1|1129460_1130243_-|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDEEVRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPMLAMIYVTHFIEEITSNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP028189.1|AVS40907.1|1130474_1132280_-|glutamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP028189.1|AVS40908.1|1132960_1134499_+|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP028189.1|AVS40909.1|1134533_1136666_+|PRD-domain-containing-protein
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP028189.1|AVS40910.1|1136677_1137112_+|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA

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Crispr_ID: CP028189_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028189_7

2483902-2483984

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028189_7

>merge|CP028189|7|2483902-2483984|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>CP028189|7|7|2483902-2483984|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP028189.1\|AVS42146.1\|2484432_2485350_-\|lipid-kinase	unknown	unknown	gnl\|CDD\|224513
CP028189.1\|AVS42155.1\|2492236_2493208_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
CP028189.1\|AVS42149.1\|2487190_2487436_-\|hypothetical-protein	unknown	unknown	unknown
CP028189.1\|AVS42152.1\|2489236_2489503_+\|ribonucleoside-diphosphate-reductase	unknown	unknown	unknown
CP028189.1\|AVS42140.1\|2477130_2478912_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
CP028189.1\|AVS42135.1\|2470558_2470765_+\|hypothetical-protein	unknown	unknown	unknown
CP028189.1\|AVS42143.1\|2481857_2482916_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235106
CP028189.1\|AVS42150.1\|2487465_2487966_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|223851
CP028189.1\|AVS42137.1\|2471546_2472551_+\|allophanate-hydrolase	unknown	unknown	gnl\|CDD\|224895
CP028189.1\|AVS42138.1\|2473024_2474965_+\|lipoteichoic-acid-synthase	unknown	unknown	gnl\|CDD\|224287
CP028189.1\|AVS42153.1\|2489652_2490051_+\|protein-NrdI	unknown	unknown	gnl\|CDD\|224694
CP028189.1\|AVS42141.1\|2479133_2480111_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
CP028189.1\|AVS42154.1\|2490013_2492119_+\|ribonucleotide-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236069
CP028189.1\|AVS42142.1\|2480103_2481618_+\|glycine/betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|270328
CP028189.1\|AVS42148.1\|2485619_2487125_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|225646
CP028189.1\|AVS42151.1\|2487985_2488852_-\|EamA/RhaT-family-transporter	unknown	unknown	gnl\|CDD\|223769
CP028189.1\|AVS42147.1\|2485440_2485542_+\|hypothetical-protein	unknown	unknown	unknown
CP028189.1\|AVS42139.1\|2475235_2477119_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223562
CP028189.1\|AVS42136.1\|2470852_2471563_+\|allophanate-hydrolase	unknown	unknown	gnl\|CDD\|224960
CP028189.1\|AVS42144.1\|2483210_2483753_+\|5'(3')-deoxyribonucleotidase	unknown	unknown	gnl\|CDD\|226895

Protein	Function_ID	Function_description	E-value
CP028189.1\|AVS42146.1\|2484432_2485350_-\|lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	3.10512e-78
CP028189.1\|AVS42155.1\|2492236_2493208_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.30551e-164
CP028189.1\|AVS42140.1\|2477130_2478912_+\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
CP028189.1\|AVS42148.1\|2485619_2487125_-\|peptide-MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.22605e-172
CP028189.1\|AVS42143.1\|2481857_2482916_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
CP028189.1\|AVS42150.1\|2487465_2487966_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	7.91282e-79
CP028189.1\|AVS42137.1\|2471546_2472551_+\|allophanate-hydrolase	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	1.25641e-144
CP028189.1\|AVS42138.1\|2473024_2474965_+\|lipoteichoic-acid-synthase	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
CP028189.1\|AVS42153.1\|2489652_2490051_+\|protein-NrdI	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
CP028189.1\|AVS42141.1\|2479133_2480111_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	4.80291e-155
CP028189.1\|AVS42154.1\|2490013_2492119_+\|ribonucleotide-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
CP028189.1\|AVS42142.1\|2480103_2481618_+\|glycine/betaine-ABC-transporter-permease	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.03165e-152
CP028189.1\|AVS42151.1\|2487985_2488852_-\|EamA/RhaT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.8323e-10
CP028189.1\|AVS42139.1\|2475235_2477119_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
CP028189.1\|AVS42136.1\|2470852_2471563_+\|allophanate-hydrolase	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	1.29969e-94
CP028189.1\|AVS42144.1\|2483210_2483753_+\|5'(3')-deoxyribonucleotidase	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	1.15481e-107

>CP028189.1|AVS42144.1|2483210_2483753_+|5'(3')-deoxyribonucleotidase
MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>CP028189.1|AVS42143.1|2481857_2482916_+|histidinol-phosphate-transaminase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPPHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKNSVERERFYQLPQSEYFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNDKMLEVLSNFKYE
>CP028189.1|AVS42142.1|2480103_2481618_+|glycine/betaine-ABC-transporter-permease
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>CP028189.1|AVS42141.1|2479133_2480111_+|ABC-transporter-ATP-binding-protein
MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD
>CP028189.1|AVS42140.1|2477130_2478912_+|DNA-helicase-RecQ
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>CP028189.1|AVS42139.1|2475235_2477119_+|ABC-transporter-ATP-binding-protein
MGMEAYKIEHLNKSYADKTIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQAVQAYADDQSDKLFKRMMDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREESEIAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSSTTVRKKNGLSYKEKLEYEHLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>CP028189.1|AVS42138.1|2473024_2474965_+|lipoteichoic-acid-synthase
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK
>CP028189.1|AVS42137.1|2471546_2472551_+|allophanate-hydrolase
MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRLVANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLKFRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTARHHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKVTSKANRMGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
>CP028189.1|AVS42136.1|2470852_2471563_+|allophanate-hydrolase
MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDLESLLKHYKIKLETFIELHSKAQYFVSMMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN
>CP028189.1|AVS42135.1|2470558_2470765_+|hypothetical-protein
MIIVYIVLLLILVYVNYRLVNRLLSENRIYVVRLIATITTVISFILVYALIHELMPFVVRAMDLMYHQ
>CP028189.1|AVS42146.1|2484432_2485350_-|lipid-kinase
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMTHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILTANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>CP028189.1|AVS42147.1|2485440_2485542_+|hypothetical-protein
MVINEIDFYRVGRENIVIAVYNEHIKFLFILIS
>CP028189.1|AVS42148.1|2485619_2487125_-|peptide-MFS-transporter
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>CP028189.1|AVS42149.1|2487190_2487436_-|hypothetical-protein
MIFLTYWCVFHLAYIIGYIKITFYTKVHQKNISTRIKQHFYRNLLHFNVNKYIFILSLINCARLITEYSQYFYFFVICWNI
>CP028189.1|AVS42150.1|2487465_2487966_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYPEKIDNR
>CP028189.1|AVS42151.1|2487985_2488852_-|EamA/RhaT-family-transporter
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFFIYKYHQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSTREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFILFGESPDFYATLGYVVIIGASYYMFEKARRDAKIIKK
>CP028189.1|AVS42152.1|2489236_2489503_+|ribonucleoside-diphosphate-reductase
MCLMYNETHNIVLVKRKRHNILCFVCKCFIYEEITFKSNLTQKFNSYYQLIVIFLENVLSKWKISNDVNTTYSDFYTFNPYKLLFSQI
>CP028189.1|AVS42153.1|2489652_2490051_+|protein-NrdI
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>CP028189.1|AVS42154.1|2490013_2492119_+|ribonucleotide-diphosphate-reductase-subunit-alpha
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFIFAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI
>CP028189.1|AVS42155.1|2492236_2493208_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP028189_1	1.1\|616305\|28\|CP028189\|CRISPRCasFinder	616305-616332	28	CP028189.1	33010-33037	1	0.964
CP028189_1	1.1\|616305\|28\|CP028189\|CRISPRCasFinder	616305-616332	28	CP028189.1	33183-33210	1	0.964
CP028189_1	1.1\|616305\|28\|CP028189\|CRISPRCasFinder	616305-616332	28	CP028189.1	134211-134238	1	0.964
CP028189_1	1.1\|616305\|28\|CP028189\|CRISPRCasFinder	616305-616332	28	CP028189.1	218020-218047	1	0.964
CP028189_1	1.1\|616305\|28\|CP028189\|CRISPRCasFinder	616305-616332	28	CP028189.1	437084-437111	1	0.964
CP028189_1	1.1\|616305\|28\|CP028189\|CRISPRCasFinder	616305-616332	28	CP028189.1	933602-933629	1	0.964
CP028189_1	1.1\|616305\|28\|CP028189\|CRISPRCasFinder	616305-616332	28	CP028189.1	944295-944322	1	0.964
CP028189_1	1.1\|616305\|28\|CP028189\|CRISPRCasFinder	616305-616332	28	CP028189.1	2080157-2080184	1	0.964
CP028189_1	1.1\|616305\|28\|CP028189\|CRISPRCasFinder	616305-616332	28	CP028189.1	2530469-2530496	1	0.964
CP028189_1	1.1\|616305\|28\|CP028189\|CRISPRCasFinder	616305-616332	28	CP028189.1	2537853-2537880	1	0.964
CP028189_1	1.1\|616305\|28\|CP028189\|CRISPRCasFinder	616305-616332	28	CP028189.1	2621248-2621275	1	0.964
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	32977-33001	1	0.96
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	33093-33117	1	0.96
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	33150-33174	1	0.96
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	348770-348794	1	0.96
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	437167-437191	1	0.96
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	934969-934993	1	0.96
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	1233346-1233370	1	0.96
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	1436516-1436540	1	0.96
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	1436574-1436598	1	0.96
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	1436632-1436656	1	0.96
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	1880426-1880450	1	0.96
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	1880484-1880508	1	0.96
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	1880542-1880566	1	0.96
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	2080249-2080273	1	0.96
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	2525115-2525139	1	0.96
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	2530549-2530573	1	0.96
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	134247-134271	2	0.92
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	134358-134382	2	0.92
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	353087-353111	2	0.92
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	648759-648783	2	0.92
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	648932-648956	2	0.92
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	738711-738735	2	0.92
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	1023271-1023295	2	0.92
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	1244194-1244218	2	0.92
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	1517746-1517770	2	0.92
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	2004306-2004330	2	0.92
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	CP028189.1	2641456-2641480	2	0.92
CP028189_7	7.1\|2483929\|29\|CP028189\|CRISPRCasFinder	2483929-2483957	29	CP028189.1	2129988-2130016	2	0.931

1. spacer 1.1|616305|28|CP028189|CRISPRCasFinder matches to position: 33010-33037, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

2. spacer 1.1|616305|28|CP028189|CRISPRCasFinder matches to position: 33183-33210, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

3. spacer 1.1|616305|28|CP028189|CRISPRCasFinder matches to position: 134211-134238, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

4. spacer 1.1|616305|28|CP028189|CRISPRCasFinder matches to position: 218020-218047, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

5. spacer 1.1|616305|28|CP028189|CRISPRCasFinder matches to position: 437084-437111, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

6. spacer 1.1|616305|28|CP028189|CRISPRCasFinder matches to position: 933602-933629, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

7. spacer 1.1|616305|28|CP028189|CRISPRCasFinder matches to position: 944295-944322, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

8. spacer 1.1|616305|28|CP028189|CRISPRCasFinder matches to position: 2080157-2080184, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

9. spacer 1.1|616305|28|CP028189|CRISPRCasFinder matches to position: 2530469-2530496, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattatcgtaagctga	Protospacer
****************** *********

10. spacer 1.1|616305|28|CP028189|CRISPRCasFinder matches to position: 2537853-2537880, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

11. spacer 1.1|616305|28|CP028189|CRISPRCasFinder matches to position: 2621248-2621275, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

12. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 32977-33001, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

13. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 33093-33117, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

14. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 33150-33174, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

15. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 348770-348794, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

16. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 437167-437191, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

17. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 934969-934993, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

18. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 1233346-1233370, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

19. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 1436516-1436540, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

20. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 1436574-1436598, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

21. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 1436632-1436656, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

22. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 1880426-1880450, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

23. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 1880484-1880508, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

24. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 1880542-1880566, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

25. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 2080249-2080273, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctatgttg	Protospacer
******************* *****

26. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 2525115-2525139, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

27. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 2530549-2530573, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

28. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 134247-134271, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttttgaaattctctgtgttg	Protospacer
********.********** *****

29. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 134358-134382, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttttgaaattctctatgttg	Protospacer
********.********** *****

30. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 353087-353111, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttatcgaaattctctgtgttg	Protospacer
****** ************ *****

31. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 648759-648783, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctctgtgttg	Protospacer
******* *********** *****

32. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 648932-648956, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctctatgttg	Protospacer
******* *********** *****

33. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 738711-738735, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctccatgttg	Protospacer
******************. *****

34. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 1023271-1023295, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctctatgttg	Protospacer
******* *********** *****

35. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 1244194-1244218, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttttgaaattctctatgttg	Protospacer
********.********** *****

36. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 1517746-1517770, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcatttcgaaattctctgtgttg	Protospacer
**** ************** *****

37. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 2004306-2004330, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctttgtgttg	Protospacer
*****************.* *****

38. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to position: 2641456-2641480, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttagaaattctctgtgttg	Protospacer
******** ********** *****

39. spacer 7.1|2483929|29|CP028189|CRISPRCasFinder matches to position: 2129988-2130016, mismatch: 2, identity: 0.931

cggggccccaacatagagaaattggaacg	CRISPR spacer
cggggccccaacataaagaaattggtacg	Protospacer
***************.********* ***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP028189_6	6.1\|1989087\|25\|CP028189\|CRISPRCasFinder	1989087-1989111	25	LC371242	Escherichia phage EcS1 DNA, complete sequence	15447-15471	2	0.92
CP028189_2	2.1\|736446\|27\|CP028189\|CRISPRCasFinder	736446-736472	27	KM359505	Prochlorococcus phage P-TIM68, complete genome	102710-102736	5	0.815
CP028189_5	5.1\|1138867\|34\|CP028189\|CRISPRCasFinder	1138867-1138900	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
CP028189_5	5.1\|1138867\|34\|CP028189\|CRISPRCasFinder	1138867-1138900	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765

1. spacer 6.1|1989087|25|CP028189|CRISPRCasFinder matches to LC371242 (Escherichia phage EcS1 DNA, complete sequence) position: , mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctttttgttg	Protospacer
******* *********.*******

2. spacer 2.1|736446|27|CP028189|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 5, identity: 0.815

gaatttcgaaaagaaattctacagacc	CRISPR spacer
ctatttccaaaagaaattatacagatc	Protospacer
  ***** ********** ******.*

3. spacer 5.1|1138867|34|CP028189|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **

4. spacer 5.1|1138867|34|CP028189|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

34703 : 43176

Synechococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS39877.1\|34703_35186_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
AVS39878.1\|35172_36297_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AVS39879.1\|36300_37005_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AVS39880.1\|37004_37268_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AVS39881.1\|37269_37941_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AVS39882.1\|37933_40123_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.5e-141	39.8
AVS39883.1\|40101_41586_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
AVS39884.1\|41578_42607_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
AVS39885.1\|42609_43176_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_2

297767 : 313774

Staphylococcus_phage(59.09%)

terminase,integrase,head,portal

attL 291491:291508|attR 315761:315778

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
291491:291508	attL	NA	NA	NA	NA
AVS40125.1\|297767_298895_-\|integrase	site-specific integrase	A0A0C5AN64	Paenibacillus_phage	6.2e-33	31.4
AVS40126.1\|298947_299643_-	hypothetical protein	A0A2H4J5B8	uncultured_Caudovirales_phage	1.4e-06	50.3
AVS40127.1\|299654_300038_-	hypothetical protein	NA	NA	NA	NA
AVS40128.1\|300184_300577_-	transcriptional regulator	A0A2I6PE55	Staphylococcus_phage	1.6e-28	53.6
AVS40129.1\|300744_300963_+	DUF739 domain-containing protein	A0A2I6PE94	Staphylococcus_phage	4.9e-19	62.5
AVS40130.1\|300989_301265_+	hypothetical protein	NA	NA	NA	NA
AVS40131.1\|301688_301895_-	hypothetical protein	A1BTY8	Staphylococcus_virus	3.3e-25	75.0
AVS40132.1\|301955_302639_+	phage repressor protein	A9CR56	Staphylococcus_phage	5.2e-107	85.6
AVS40133.1\|302737_302899_+	DUF1270 domain-containing protein	R4IH12	Staphylococcus_phage	1.1e-12	69.8
AVS40134.1\|302985_303303_+	DUF2482 domain-containing protein	W5RAK4	Staphylococcus_phage	1.6e-39	80.6
AVS40135.1\|303292_303559_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	3.0e-18	53.6
AVS40136.1\|303563_304100_+	hypothetical protein	A0A0H3U480	Staphylococcus_phage	1.7e-76	82.5
AVS40137.1\|304100_304880_+	chromosomal replication initiator DnaA	A0A1W6JPW0	Staphylococcus_phage	2.3e-127	88.0
AVS42383.1\|304960_305455_+	single-stranded DNA-binding protein	A7TWM8	Staphylococcus_phage	1.4e-82	93.4
AVS40138.1\|305467_306370_+	DnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	2.9e-49	52.0
AVS40139.1\|306370_306661_+	hypothetical protein	A0A223LIA9	Staphylococcus_phage	7.2e-18	58.1
AVS40140.1\|306675_306834_+	hypothetical protein	A0A0E3T9L7	Staphylococcus_phage	6.7e-18	90.4
AVS40141.1\|306839_307151_+	hypothetical protein	NA	NA	NA	NA
AVS40142.1\|307143_307674_+	nucleotide pyrophosphohydrolase	A0A1P8VVP1	Streptococcus_phage	2.3e-22	39.1
AVS40143.1\|307908_308373_+	hypothetical protein	C9E2P0	Enterococcus_phage	3.2e-20	43.0
AVS40144.1\|308373_308607_+	hypothetical protein	NA	NA	NA	NA
AVS40145.1\|308649_309138_+	RNA polymerase subunit sigma-70	R9TMH4	Paenibacillus_phage	8.7e-08	28.3
AVS40146.1\|309290_309719_+	helix-turn-helix domain-containing protein	A1EAE0	Streptococcus_phage	1.1e-25	45.1
AVS40147.1\|309705_310980_+\|terminase	PBSX family phage terminase large subunit	Q4ZE37	Staphylococcus_virus	3.2e-195	76.2
AVS40148.1\|310992_312441_+\|portal	phage portal protein	Q4ZE36	Staphylococcus_virus	3.7e-195	69.4
AVS40149.1\|312430_313774_+\|head	phage head morphogenesis protein	A0A1J0MFV1	Staphylococcus_phage	1.3e-138	56.8
315761:315778	attR	NA	NA	NA	NA

DBSCAN-SWA_3

587860 : 596190

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS40398.1\|587860_588646_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-18	28.3
AVS40399.1\|588771_589662_-	endonuclease	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	36.0
AVS40400.1\|589671_591018_-	DEAD/DEAH box family ATP-dependent RNA helicase	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
AVS40401.1\|591131_592232_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
AVS40402.1\|592234_592912_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
AVS40403.1\|593042_594149_-	RNA polymerase sigma factor SigA	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AVS40404.1\|594372_596190_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.6e-54	36.0

DBSCAN-SWA_4

798961 : 844679

Staphylococcus_phage(91.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS40592.1\|798961_805522_-	peptidase	A0A2H4PQU6	Staphylococcus_phage	4.3e-299	96.4
AVS40593.1\|805847_806159_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
AVS40594.1\|806180_808598_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.3
AVS40595.1\|808885_810067_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
AVS40596.1\|810176_811130_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AVS40597.1\|811126_811690_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AVS40598.1\|811809_812211_-	MarR family transcriptional regulator	NA	NA	NA	NA
AVS40599.1\|812781_813609_-	alpha/beta hydrolase	NA	NA	NA	NA
AVS40600.1\|813611_813731_-	hypothetical protein	NA	NA	NA	NA
AVS40601.1\|813742_813934_-	hypothetical protein	NA	NA	NA	NA
AVS40602.1\|813842_814844_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	3.1e-185	100.0
AVS40603.1\|814965_815430_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
AVS40604.1\|815442_816624_-	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	1.7e-227	100.0
AVS40605.1\|816634_817267_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.4e-113	100.0
AVS42396.1\|817273_818305_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.0e-195	98.8
AVS40606.1\|818797_820300_-	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
AVS40607.1\|820822_821137_+	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
AVS40608.1\|821136_822429_+	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
AVS40609.1\|822446_822842_+	protein ArsC	A0A2H4PQT9	Staphylococcus_phage	6.3e-73	100.0
AVS40610.1\|823136_823991_-	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AVS40611.1\|824266_824491_-	hypothetical protein	NA	NA	NA	NA
AVS40612.1\|824689_825160_+	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
AVS40613.1\|825272_825716_+	competence protein ComK	NA	NA	NA	NA
AVS40614.1\|825702_826146_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
AVS40615.1\|826441_827077_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AVS40616.1\|827516_828230_-	transaldolase	M1PR54	Cyanophage	1.2e-18	34.8
AVS40617.1\|828489_828792_+	hypothetical protein	NA	NA	NA	NA
AVS40618.1\|829047_829413_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AVS40619.1\|829409_829763_+	camphor resistance protein CrcB	A0A2H4PQQ7	Staphylococcus_phage	2.6e-22	100.0
AVS40620.1\|829954_830134_+	hypothetical protein	NA	NA	NA	NA
AVS40621.1\|830145_830979_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	7.8e-158	99.3
AVS40622.1\|831190_832099_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
AVS40623.1\|832223_833417_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
AVS40624.1\|833788_835381_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AVS42397.1\|835758_836505_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	2.9e-143	98.8
AVS40625.1\|836509_836983_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	1.4e-82	97.5
AVS40626.1\|837048_837306_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	3.6e-45	98.8
AVS40627.1\|837302_838304_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	9.7e-187	98.2
AVS40628.1\|838308_839787_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.5e-289	100.0
AVS42398.1\|839945_840401_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	1.2e-78	98.6
AVS40629.1\|840703_841354_+	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	3.0e-56	99.1
AVS40630.1\|841434_842430_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	4.2e-73	97.2
AVS40631.1\|842503_843130_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.9e-93	93.8
AVS40632.1\|843129_843900_+	exotoxin	A0EX09	Staphylococcus_phage	4.3e-25	33.5
AVS40633.1\|843926_844679_+	hypothetical protein	A0A097PAT7	Streptococcus_pyogenes_phage	4.4e-51	47.2

DBSCAN-SWA_5

2462066 : 2469885

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS42124.1\|2462066_2463122_-	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	1.6e-14	29.5
AVS42125.1\|2463121_2463808_-	DNA-binding response regulator	NA	NA	NA	NA
AVS42126.1\|2463782_2464256_-	DoxX family protein	NA	NA	NA	NA
AVS42127.1\|2464596_2465037_-	hypothetical protein	NA	NA	NA	NA
AVS42128.1\|2465316_2465901_-	hypothetical protein	NA	NA	NA	NA
AVS42129.1\|2465999_2466713_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AVS42130.1\|2466716_2467136_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
AVS42131.1\|2467137_2467806_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AVS42132.1\|2468156_2468750_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
AVS42133.1\|2468733_2469885_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	1.2e-23	36.1

DBSCAN-SWA_6

2481857 : 2496588

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVS42143.1\|2481857_2482916_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7
AVS42144.1\|2483210_2483753_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AVS42145.1\|2483924_2484020_+	hypothetical protein	NA	NA	NA	NA
AVS42146.1\|2484432_2485350_-	lipid kinase	A0A1V0SBJ0	Catovirus	3.7e-07	22.0
AVS42147.1\|2485440_2485542_+	hypothetical protein	NA	NA	NA	NA
AVS42148.1\|2485619_2487125_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AVS42149.1\|2487190_2487436_-	hypothetical protein	NA	NA	NA	NA
AVS42150.1\|2487465_2487966_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AVS42151.1\|2487985_2488852_-	EamA/RhaT family transporter	NA	NA	NA	NA
AVS42152.1\|2489236_2489503_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA
AVS42153.1\|2489652_2490051_+	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AVS42154.1\|2490013_2492119_+	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.6
AVS42155.1\|2492236_2493208_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AVS42156.1\|2493340_2493445_+	hypothetical protein	NA	NA	NA	NA
AVS42470.1\|2493915_2494887_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	9.5e-139	78.9
AVS42157.1\|2494873_2495830_+	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AVS42158.1\|2495826_2496588_+	iron ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028189

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection