CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027583	Escherichia coli strain 2013C-4538 plasmid unnamed	0 crisprs	NA	0	0	0	0
CP027582	Escherichia coli strain 2013C-4538 chromosome, complete genome	8 crisprs	NA	1	12	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027582_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027582_1

1189593-1189716

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027582_1

>merge|CP027582|1|1189593-1189716|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP027582|1|1|1189593-1189716|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

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Crispr_ID: CP027582_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027582_2

1856218-1856421

Orphan

Consensus_repeat	Method
TCTCCCCACTTTTACTCCCCACTTTTT	PILER-CR

2 spacers

The CRISPR arrays of CP027582_2

>merge|CP027582|2|1856218-1856421|PILER-CR
TCCCCACTACTCCCCACTTTTGCTCCCCACTTTTTGAAATTACCCACCGTCTCCCCACCTCTTTTTTTTTGTGATTCTAACGTGATGTTTTTCAATATATTTTTTACTCCCCACTTTTTTGGGTATATACAGGTGGGAAAGTGGGCAATTATGTTTCAATTTTGTTAAATTCCCCACTCTCCCCACTTTTACTCCCCACTTTTT

>CP027582|2|1|1856218-1856421|PILER-CR
TCCCCACTACTCCCCACTTTTGCTCCCCACTTTTTG	AAATTACCCACCGTCTCCCCACCTCTTTTTTTTTGTGATTCTAACGTGATGTTTTTCAATATATT
TTTTACTCCCCACTTTTTTGGGTATATACAGGTGGG	AAAGTGGGCAATTATGTTTCAATTTTGTTAAATTCCCCACTCTCCCCACTTTTACTCC
CCACTTTTT

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Crispr_ID: CP027582_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027582_3

2138289-2138380

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027582_3

>merge|CP027582|3|2138289-2138380|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>CP027582|3|2|2138289-2138380|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

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Crispr_ID: CP027582_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027582_4

2625414-2625558

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027582_4

>merge|CP027582|4|2625414-2625558|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

>CP027582|4|3|2625414-2625558|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

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Crispr_ID: CP027582_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027582_5

3467360-3467492

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of CP027582_5

>merge|CP027582|5|3467360-3467492|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTCCTCACCAATATTGAAAACATCGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGGATCACCAATATTGAAAG

>CP027582|5|2|3467360-3467492|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTC
CTCACCAATATTGAAAA	CATCGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGG
ATCACCAATATTGAAAG

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Crispr_ID: CP027582_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027582_6

5052602-5052719

Orphan

Consensus_repeat	Method
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027582_6

>merge|CP027582|6|5052602-5052719|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGGGTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGATGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

>CP027582|6|4|5052602-5052719|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	GTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGA
TGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

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Crispr_ID: CP027582_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027582_7

5449636-5450213

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GNGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
TCCCCGCGCCAGCGGGGATAAACC	PILER-CR

9 spacers

The CRISPR arrays of CP027582_7

>merge|CP027582|7|5449636-5450213|CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGATCTCCTCATCCTCCCAGCTACCGACAGTAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAGATCTGCCGCGAGTGGTTTCACCCGGCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGTACGGAACATGCTGTCTATATTTCGACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGTGGAGCCGCCGCGAATTTACACACGATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAGGCCGTCGCCGGATCAGCCTGGCTATGCCGAGCTCCCCGCGCCAGCGGGGATAAACCGTTCTTGCGGGTGTTGCAAATATTCTTCACGTAGAGCTCCCCGCGCCAGCGGGGATAAACCGGAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGTTCCCCGCGCCAGCGGGGATAAACCGGAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGTTCCCCGCGCCAGCGGGGATAAACCGGACGCCGCCGCCGCGAAGCCGTTTCCGATGTTGAGCTCCCCGCGCCAGCGGGGATAAACCA

>CP027582|7|5|5449636-5450213|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCTCCTCATCCTCCCAGCTACCGACAGTAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAGATCTGCCGCGAGTGGTTTCACCCGGCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGTACGGAACATGCTGTCTATATTTCGACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGAGCCGCCGCGAATTTACACACGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC
GAGCTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGCGGGTGTTGCAAATATTCTTCACGTA
GAGCTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT
GAGCTCCCCGCGCCAGCGGGGATAAACCA

>CP027582|7|1|5449636-5450213|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCTCCTCATCCTCCCAGCTACCGACAGTAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAGATCTGCCGCGAGTGGTTTCACCCGGCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGTACGGAACATGCTGTCTATATTTCGACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTGGAGCCGCCGCGAATTTACACACGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC
GAGCTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGCGGGTGTTGCAAATATTCTTCACGTA
GAGCTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT
GAGCTCCCCGCGCCAGCGGGGATAAACCA

>CP027582|7|3|5449640-5450212|PILER-CR
TCCCCGCGCCAGCGGGGATAAACC	GATCTCCTCATCCTCCCAGCTACCGACAGTAGTGTGT
TCCCCGCGCCAGCGGGGATAAACC	GCAAGATCTGCCGCGAGTGGTTTCACCCGGCAGGTGT
TCCCCGCGCCAGCGGGGATAAACC	GTGGTACGGAACATGCTGTCTATATTTCGACCAGTGT
TCCCCGCGCCAGCGGGGATAAACC	GCCAGTGGAGCCGCCGCGAATTTACACACGATTGTGT
TCCCCGCGCCAGCGGGGATAAACC	GTAAGGCCGTCGCCGGATCAGCCTGGCTATGCCGAGC
TCCCCGCGCCAGCGGGGATAAACC	GTTCTTGCGGGTGTTGCAAATATTCTTCACGTAGAGC
TCCCCGCGCCAGCGGGGATAAACC	GGAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGT
TCCCCGCGCCAGCGGGGATAAACC	GGAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGT
TCCCCGCGCCAGCGGGGATAAACC	GGACGCCGCCGCCGCGAAGCCGTTTCCGATGTTGAGC
TCCCCGCGCCAGCGGGGATAAACC

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Crispr_ID: CP027582_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027582_8

5475914-5476126

Orphan

I-E

Consensus_repeat	Method
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

3 spacers

The CRISPR arrays of CP027582_8

>merge|CP027582|8|5475914-5476126|PILER-CR,CRISPRCasFinder,CRT
TGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAAACCGACAGGTTCACTTACCCGGCCCGACGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCTATGGAATTTATGGAGAAGTTTGGTTTTGTGTTCCCCGCGTCAGCGGGGATAAACCGGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCC

>CP027582|8|4|5475914-5476065|PILER-CR
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAACCGACAGGTTCACTTACCCGGCCCGA
CGTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCTATGGAATTTATGGAGAAGTTTGGTTT
TGTGTTCCCCGCGTCAGCGGGGATAAACCG

>CP027582|8|6|5475915-5476065|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAACCGACAGGTTCACTTACCCGGCCCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCTATGGAATTTATGGAGAAGTTTGGTTTT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>CP027582|8|2|5475915-5476126|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAACCGACAGGTTCACTTACCCGGCCCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCTATGGAATTTATGGAGAAGTTTGGTTTT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GGCGCACTGGATGCGATGATGGATATCACTTA
GAATTCCCCGCCCCTGCGGTAGAACTCCC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP027582_2	2.2\|1856355\|58\|CP027582\|PILER-CR	1856355-1856412	58	CP027582.1	508810-508867	1	0.983

1. spacer 2.2|1856355|58|CP027582|PILER-CR matches to position: 508810-508867, mismatch: 1, identity: 0.983

tgggtatatacaggtgggaaagtgggcaattatgtttcaattttgttaaattccccac	CRISPR spacer
tgggtatatacaggtgggaaagtgggtaattatgtttcaattttgttaaattccccac	Protospacer
**************************.*******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027582_3	3.1\|2138315\|40\|CP027582\|CRISPRCasFinder	2138315-2138354	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
CP027582_5	5.1\|3467377\|42\|CP027582\|PILER-CR	3467377-3467418	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	0	1.0
CP027582_1	1.1\|1189636\|38\|CP027582\|CRISPRCasFinder	1189636-1189673	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
CP027582_5	5.2\|3467436\|40\|CP027582\|PILER-CR	3467436-3467475	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	2	0.95
CP027582_8	8.5\|5476066\|32\|CP027582\|CRT	5476066-5476097	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246937-246968	3	0.906
CP027582_8	8.2\|5476005\|31\|CP027582\|PILER-CR	5476005-5476035	31	NZ_CP050442	Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence	41503-41533	6	0.806
CP027582_8	8.4\|5476005\|32\|CP027582\|CRISPRCasFinder,CRT	5476005-5476036	32	NZ_CP050442	Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence	41503-41534	6	0.812
CP027582_7	7.9\|5450153\|32\|CP027582\|CRISPRCasFinder,CRT	5450153-5450184	32	KR080197	Mycobacterium phage FlagStaff, complete genome	15476-15507	7	0.781
CP027582_8	8.5\|5476066\|32\|CP027582\|CRT	5476066-5476097	32	NZ_CP015038	Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence	112768-112799	7	0.781
CP027582_7	7.1\|5449665\|32\|CP027582\|CRISPRCasFinder,CRT	5449665-5449696	32	NC_012852	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence	256608-256639	8	0.75
CP027582_7	7.7\|5450031\|32\|CP027582\|CRISPRCasFinder,CRT	5450031-5450062	32	MK814759	Gordonia phage Reyja, complete genome	4467-4498	8	0.75
CP027582_7	7.8\|5450092\|32\|CP027582\|CRISPRCasFinder,CRT	5450092-5450123	32	MK814759	Gordonia phage Reyja, complete genome	4467-4498	8	0.75
CP027582_7	7.9\|5450153\|32\|CP027582\|CRISPRCasFinder,CRT	5450153-5450184	32	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	15418-15449	8	0.75
CP027582_8	8.5\|5476066\|32\|CP027582\|CRT	5476066-5476097	32	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1428097-1428128	8	0.75
CP027582_7	7.1\|5449665\|32\|CP027582\|CRISPRCasFinder,CRT	5449665-5449696	32	NZ_CP050094	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence	196778-196809	9	0.719
CP027582_7	7.1\|5449665\|32\|CP027582\|CRISPRCasFinder,CRT	5449665-5449696	32	NZ_CP050101	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b6, complete sequence	151768-151799	9	0.719
CP027582_7	7.1\|5449665\|32\|CP027582\|CRISPRCasFinder,CRT	5449665-5449696	32	NZ_CP050106	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence	508685-508716	9	0.719
CP027582_7	7.1\|5449665\|32\|CP027582\|CRISPRCasFinder,CRT	5449665-5449696	32	NZ_CP025016	Rhizobium leguminosarum strain Norway plasmid pRLN4, complete sequence	133778-133809	9	0.719
CP027582_7	7.1\|5449665\|32\|CP027582\|CRISPRCasFinder,CRT	5449665-5449696	32	NC_008379	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9, complete sequence	180274-180305	9	0.719
CP027582_7	7.1\|5449665\|32\|CP027582\|CRISPRCasFinder,CRT	5449665-5449696	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	151061-151092	9	0.719
CP027582_7	7.1\|5449665\|32\|CP027582\|CRISPRCasFinder,CRT	5449665-5449696	32	NZ_CP018233	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence	21422-21453	9	0.719
CP027582_7	7.1\|5449665\|32\|CP027582\|CRISPRCasFinder,CRT	5449665-5449696	32	NZ_CP025506	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence	499023-499054	9	0.719
CP027582_7	7.1\|5449665\|32\|CP027582\|CRISPRCasFinder,CRT	5449665-5449696	32	NZ_CP016293	Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence	106143-106174	9	0.719
CP027582_7	7.1\|5449665\|32\|CP027582\|CRISPRCasFinder,CRT	5449665-5449696	32	NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	508869-508900	9	0.719
CP027582_7	7.1\|5449665\|32\|CP027582\|CRISPRCasFinder,CRT	5449665-5449696	32	NZ_CP048283	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248c, complete sequence	130036-130067	9	0.719
CP027582_7	7.1\|5449665\|32\|CP027582\|CRISPRCasFinder,CRT	5449665-5449696	32	NZ_CP030763	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence	172635-172666	9	0.719
CP027582_7	7.1\|5449665\|32\|CP027582\|CRISPRCasFinder,CRT	5449665-5449696	32	NZ_CP022668	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence	387130-387161	9	0.719
CP027582_7	7.1\|5449665\|32\|CP027582\|CRISPRCasFinder,CRT	5449665-5449696	32	NZ_CP022569	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence	4795-4826	9	0.719
CP027582_7	7.1\|5449665\|32\|CP027582\|CRISPRCasFinder,CRT	5449665-5449696	32	NZ_CP050088	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence	158950-158981	9	0.719
CP027582_7	7.5\|5449909\|32\|CP027582\|CRISPRCasFinder,CRT	5449909-5449940	32	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	224876-224907	9	0.719
CP027582_7	7.9\|5450153\|32\|CP027582\|CRISPRCasFinder,CRT	5450153-5450184	32	NZ_CP009292	Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence	139210-139241	9	0.719
CP027582_8	8.5\|5476066\|32\|CP027582\|CRT	5476066-5476097	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	141278-141309	9	0.719
CP027582_7	7.9\|5450153\|32\|CP027582\|CRISPRCasFinder,CRT	5450153-5450184	32	NZ_CP012383	Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence	14130-14161	10	0.688

1. spacer 3.1|2138315|40|CP027582|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 5.1|3467377|42|CP027582|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
******************************************

3. spacer 1.1|1189636|38|CP027582|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

4. spacer 5.2|3467436|40|CP027582|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 2, identity: 0.95

catcgcgtagcaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
*** ****** *****************************

5. spacer 8.5|5476066|32|CP027582|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 3, identity: 0.906

ggcgcactggatgcgatgatggatatcactta	CRISPR spacer
gacgcactggatgcgatgatggacatcacttg	Protospacer
*.*********************.*******.

6. spacer 8.2|5476005|31|CP027582|PILER-CR matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.806

cggctatggaatttatggagaagtttggttt	CRISPR spacer
ctcctatggaatttatgcagaagtttagtaa	Protospacer
*  ************** ********.**

7. spacer 8.4|5476005|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

cggctatggaatttatggagaagtttggtttt	CRISPR spacer
ctcctatggaatttatgcagaagtttagtaat	Protospacer
*  ************** ********.**  *

8. spacer 7.9|5450153|32|CP027582|CRISPRCasFinder,CRT matches to KR080197 (Mycobacterium phage FlagStaff, complete genome) position: , mismatch: 7, identity: 0.781

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gacgccggcgccgcgatgccgttcgccgggtt	Protospacer
******* ******** ******. * . ***

9. spacer 8.5|5476066|32|CP027582|CRT matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgcactggatgcgatgatggat-atcactta	CRISPR spacer
ggcgcactggctgcgatgaaggacgatcaacc-	Protospacer
********** ******** ***. **** ..

10. spacer 7.1|5449665|32|CP027582|CRISPRCasFinder,CRT matches to NC_012852 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence) position: , mismatch: 8, identity: 0.75

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcacc	Protospacer
**...*********** *** *******.* .

11. spacer 7.7|5450031|32|CP027582|CRISPRCasFinder,CRT matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.75

gagcctgacgagactactgaggccgttctgtc-	CRISPR spacer
aagcctgacgaggctactggggcca-gcggtgg	Protospacer
.***********.******.****.  * **

12. spacer 7.8|5450092|32|CP027582|CRISPRCasFinder,CRT matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.75

gagcctgacgagactactgaggccgttctgtc-	CRISPR spacer
aagcctgacgaggctactggggcca-gcggtgg	Protospacer
.***********.******.****.  * **

13. spacer 7.9|5450153|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gtcgccgccgccgcgcagccctttccacagcc	Protospacer
* ************* **** *****.  *..

14. spacer 8.5|5476066|32|CP027582|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgcactggatgcgatgatggata---tcactta	CRISPR spacer
ggcgcactggaagcggtgatggaggggcgcac---	Protospacer
*********** ***.******* .    ***

15. spacer 7.1|5449665|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP050094 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

16. spacer 7.1|5449665|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP050101 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b6, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

17. spacer 7.1|5449665|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

18. spacer 7.1|5449665|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP025016 (Rhizobium leguminosarum strain Norway plasmid pRLN4, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

19. spacer 7.1|5449665|32|CP027582|CRISPRCasFinder,CRT matches to NC_008379 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

20. spacer 7.1|5449665|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

21. spacer 7.1|5449665|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP018233 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

22. spacer 7.1|5449665|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP025506 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

23. spacer 7.1|5449665|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP016293 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

24. spacer 7.1|5449665|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

25. spacer 7.1|5449665|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP048283 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248c, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

26. spacer 7.1|5449665|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

27. spacer 7.1|5449665|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP022668 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

28. spacer 7.1|5449665|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP022569 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

29. spacer 7.1|5449665|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP050088 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence) position: , mismatch: 9, identity: 0.719

atctcctcatcctcccagctaccgacagtagt	CRISPR spacer
attctctcatcctccccgctcccgacagcgcc	Protospacer
**...*********** *** *******.. .

30. spacer 7.5|5449909|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

taaggccgtcgccggatcagcctggctatgcc	CRISPR spacer
cggggccgtcgccggatcagccggtctgctgc	Protospacer
...******************* * **..  *

31. spacer 7.9|5450153|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 9, identity: 0.719

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gaagccgccgccgcgaacccgtttttcccggg	Protospacer
** ************** ******..  .*

32. spacer 8.5|5476066|32|CP027582|CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719

ggcgcactggatgcgatgatggatatcactta	CRISPR spacer
ggcgcactggaaccgatgatggatgcgatgag	Protospacer
***********  ***********.. *.  .

33. spacer 7.9|5450153|32|CP027582|CRISPRCasFinder,CRT matches to NZ_CP012383 (Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence) position: , mismatch: 10, identity: 0.688

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
ttgcccgccgcggcgaagccgcttccgtcctc	Protospacer
    ******* *********.***** . *.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027582

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection