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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP027615 Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed3, complete sequence 0 crisprs DEDDh 0 0 1 0
CP027617 Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed5, complete sequence 1 crisprs NA 0 1 0 0
CP027612 Klebsiella pneumoniae subsp. ozaenae strain AR_0096 chromosome, complete genome 0 crisprs DEDDh,csa3,cas3,WYL,DinG,RT 0 0 7 0
CP027614 Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 5 0
CP027616 Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed4, complete sequence 0 crisprs NA 0 0 2 0
CP027613 Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. CP027615
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 108201 117 Salmonella_phage(82.95%) terminase,tail,integrase,capsid attL 48538:48558|attR 72588:72608
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP027617
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027617_1 51738-51859 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP027617_1 1.1|51767|64|CP027617|CRISPRCasFinder 51767-51830 64 NZ_CP026279 Klebsiella oxytoca strain KONIH2 plasmid pKOR-b08d, complete sequence 23224-23287 4 0.938
CP027617_1 1.1|51767|64|CP027617|CRISPRCasFinder 51767-51830 64 NZ_KT148595 Klebsiella pneumoniae subsp. pneumoniae strain GN1006 plasmid pKPC-SMH, complete sequence 976-1039 4 0.938
CP027617_1 1.1|51767|64|CP027617|CRISPRCasFinder 51767-51830 64 NZ_CP026274 Klebsiella oxytoca strain KONIH4 plasmid pKPC-4b66, complete sequence 169583-169646 4 0.938
CP027617_1 1.1|51767|64|CP027617|CRISPRCasFinder 51767-51830 64 NZ_CP027617 Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed5, complete sequence 51767-51830 4 0.938
CP027617_1 1.1|51767|64|CP027617|CRISPRCasFinder 51767-51830 64 NZ_CP029112 Escherichia coli strain AR436 plasmid unnamed3, complete sequence 16875-16938 4 0.938
CP027617_1 1.1|51767|64|CP027617|CRISPRCasFinder 51767-51830 64 NZ_CP026184 Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-af73, complete sequence 14094-14157 4 0.938
CP027617_1 1.1|51767|64|CP027617|CRISPRCasFinder 51767-51830 64 NZ_CP011646 Klebsiella pneumoniae strain CAV1596 plasmid pKPC_CAV1596-97, complete sequence 74601-74664 4 0.938
CP027617_1 1.1|51767|64|CP027617|CRISPRCasFinder 51767-51830 64 NZ_CP027125 Escherichia coli strain AR_0374 plasmid unnamed3 38511-38574 4 0.938
CP027617_1 1.1|51767|64|CP027617|CRISPRCasFinder 51767-51830 64 NZ_CP010382 Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-53.129kb, complete sequence 22397-22460 4 0.938
CP027617_1 1.1|51767|64|CP027617|CRISPRCasFinder 51767-51830 64 NZ_CP026205 Escherichia coli strain ECONIH5 plasmid pKPC-e3ee, complete sequence 22855-22918 5 0.922
CP027617_1 1.1|51767|64|CP027617|CRISPRCasFinder 51767-51830 64 NZ_CP026232 Citrobacter freundii complex sp. CFNIH4 plasmid pKPC-c9fd, complete sequence 7925-7988 6 0.906
CP027617_1 1.1|51767|64|CP027617|CRISPRCasFinder 51767-51830 64 NZ_CP017587 Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ06, complete sequence 38069-38132 7 0.891
CP027617_1 1.1|51767|64|CP027617|CRISPRCasFinder 51767-51830 64 NZ_CP019907 Escherichia coli strain MDR_56 plasmid unnamed2, complete sequence 8399-8462 9 0.859

1. spacer 1.1|51767|64|CP027617|CRISPRCasFinder matches to NZ_CP026279 (Klebsiella oxytoca strain KONIH2 plasmid pKOR-b08d, complete sequence) position: , mismatch: 4, identity: 0.938

tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	CRISPR spacer
tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	Protospacer
************************************************************

2. spacer 1.1|51767|64|CP027617|CRISPRCasFinder matches to NZ_KT148595 (Klebsiella pneumoniae subsp. pneumoniae strain GN1006 plasmid pKPC-SMH, complete sequence) position: , mismatch: 4, identity: 0.938

tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	CRISPR spacer
tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	Protospacer
************************************************************

3. spacer 1.1|51767|64|CP027617|CRISPRCasFinder matches to NZ_CP026274 (Klebsiella oxytoca strain KONIH4 plasmid pKPC-4b66, complete sequence) position: , mismatch: 4, identity: 0.938

tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	CRISPR spacer
tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	Protospacer
************************************************************

4. spacer 1.1|51767|64|CP027617|CRISPRCasFinder matches to NZ_CP027617 (Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed5, complete sequence) position: , mismatch: 4, identity: 0.938

tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	CRISPR spacer
tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	Protospacer
************************************************************

5. spacer 1.1|51767|64|CP027617|CRISPRCasFinder matches to NZ_CP029112 (Escherichia coli strain AR436 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.938

tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	CRISPR spacer
tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	Protospacer
************************************************************

6. spacer 1.1|51767|64|CP027617|CRISPRCasFinder matches to NZ_CP026184 (Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-af73, complete sequence) position: , mismatch: 4, identity: 0.938

tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	CRISPR spacer
tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	Protospacer
************************************************************

7. spacer 1.1|51767|64|CP027617|CRISPRCasFinder matches to NZ_CP011646 (Klebsiella pneumoniae strain CAV1596 plasmid pKPC_CAV1596-97, complete sequence) position: , mismatch: 4, identity: 0.938

tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	CRISPR spacer
tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	Protospacer
************************************************************

8. spacer 1.1|51767|64|CP027617|CRISPRCasFinder matches to NZ_CP027125 (Escherichia coli strain AR_0374 plasmid unnamed3) position: , mismatch: 4, identity: 0.938

tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	CRISPR spacer
tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	Protospacer
************************************************************

9. spacer 1.1|51767|64|CP027617|CRISPRCasFinder matches to NZ_CP010382 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-53.129kb, complete sequence) position: , mismatch: 4, identity: 0.938

tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	CRISPR spacer
tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	Protospacer
************************************************************

10. spacer 1.1|51767|64|CP027617|CRISPRCasFinder matches to NZ_CP026205 (Escherichia coli strain ECONIH5 plasmid pKPC-e3ee, complete sequence) position: , mismatch: 5, identity: 0.922

tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	CRISPR spacer
tggtttagggggggggatttatctcggttaggggggcaatttatcttgcta-gggggggt	Protospacer
*************************************************** ********

11. spacer 1.1|51767|64|CP027617|CRISPRCasFinder matches to NZ_CP026232 (Citrobacter freundii complex sp. CFNIH4 plasmid pKPC-c9fd, complete sequence) position: , mismatch: 6, identity: 0.906

-tggtttagggggggggatttatctcggttaggggggcaatttatcttgctagggggggg	CRISPR spacer
ttggttta-ggggggggatttatctcggttaggggggcaatttatcttgctagggggggg	Protospacer
 ******* ***************************************************

12. spacer 1.1|51767|64|CP027617|CRISPRCasFinder matches to NZ_CP017587 (Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ06, complete sequence) position: , mismatch: 7, identity: 0.891

tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	CRISPR spacer
tggtttagggggggggatatatctcggttaggggggcaatttatcttgctagggggggta	Protospacer
****************** ***************************************  

13. spacer 1.1|51767|64|CP027617|CRISPRCasFinder matches to NZ_CP019907 (Escherichia coli strain MDR_56 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.859

tggtttagggggggggatttatctcggttaggggggcaatttatcttgctaggggggggt	CRISPR spacer
cggtttagggggggtgatatatctcggttaggggggcaatttatcttgctagggggggta	Protospacer
.************* *** ***************************************  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP027613
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7070 : 96428 105 Klebsiella_phage(35.71%) portal,head,tail,protease,integrase,transposase,terminase,holin,capsid attL 55759:55818|attR 94215:96480
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. CP027614
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 6163 5 Salmonella_phage(50.0%) transposase NA
DBSCAN-SWA_2 11267 : 25641 20 Aeromonas_phage(20.0%) transposase NA
DBSCAN-SWA_3 30272 : 30611 1 Klebsiella_phage(100.0%) NA NA
DBSCAN-SWA_4 61183 : 71036 8 Virus_Rctr197k(25.0%) NA NA
DBSCAN-SWA_5 74619 : 75615 1 Thermus_phage(100.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
5. CP027616
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 20558 : 91637 74 Escherichia_phage(23.53%) integrase,transposase attL 44849:44908|attR 93467:93483
DBSCAN-SWA_2 104590 : 111017 10 Yersinia_phage(16.67%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
6. CP027612
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 439615 : 446519 6 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_2 645551 : 732484 96 Klebsiella_phage(33.33%) portal,holin,tail,tRNA,head,protease,capsid,integrase,terminase attL 668279:668306|attR 709455:709482
DBSCAN-SWA_3 787707 : 861988 80 Salmonella_phage(54.35%) holin,transposase,tRNA,tail,protease,capsid,terminase NA
DBSCAN-SWA_4 3773756 : 3783219 9 Dickeya_phage(16.67%) protease,tRNA NA
DBSCAN-SWA_5 4009443 : 4090147 101 Enterobacterial_phage(16.33%) portal,holin,transposase,tRNA,tail,integrase,head,protease,capsid,terminase attL 4001395:4001412|attR 4097601:4097618
DBSCAN-SWA_6 4401126 : 4499402 111 Klebsiella_phage(60.78%) portal,holin,transposase,tail,head,protease,capsid,integrase,terminase attL 4395217:4395233|attR 4461831:4461847
DBSCAN-SWA_7 4534693 : 4545580 9 Escherichia_phage(87.5%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage