CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP027488	Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed3	0 crisprs	NA	0	0	0
CP027495	Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed10	0 crisprs	csa3	0	0	0
CP027492	Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed7	0 crisprs	NA	0	0	0
CP027491	Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed6	0 crisprs	NA	0	0	0
CP027493	Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed8	0 crisprs	csa3	0	0	0
CP027494	Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed9	0 crisprs	NA	0	0	0
CP027496	Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed1	0 crisprs	csa3	0	0	0
CP027489	Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed4	0 crisprs	NA	0	0	0
CP027490	Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed5	0 crisprs	NA	0	0	0
CP027487	Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed2	0 crisprs	NA	0	0	0
CP027486	Staphylococcus aureus strain ST2594 isolate 004 chromosome, complete genome	9 crisprs	cas3,DEDDh,DinG,csa3,RT,WYL	6	1	8

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027486_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027486_1

162543-162627

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027486_1

>merge|CP027486|1|162543-162627|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTGTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTG

>CP027486|1|1|162543-162627|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTG	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
CP027486.1\|AVO67743.1\|162688_162892_-\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO67739.1\|158157_158484_-\|staphylobilin-forming-heme-oxygenase-IsdI	unknown	unknown	gnl\|CDD\|183968
CP027486.1\|AVO67738.1\|156947_158093_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|223458
CP027486.1\|AVO67737.1\|155608_156871_+\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|223749
CP027486.1\|AVO67734.1\|152894_154100_+\|glycosyltransferase-WbuB	unknown	unknown	gnl\|CDD\|340825
CP027486.1\|AVO67751.1\|171309_178485_+\|D-alanine--poly(phosphoribitol)-ligase-subunit-DltA	unknown	unknown	gnl\|CDD\|237108
CP027486.1\|AVO67735.1\|154110_154668_+\|sugar-transferase	unknown	unknown	gnl\|CDD\|225059
CP027486.1\|AVO67745.1\|163924_164665_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
CP027486.1\|AVO67736.1\|154667_155555_+\|UDP-glucose-4-epimerase	unknown	unknown	gnl\|CDD\|187543
CP027486.1\|AVO70218.1\|168201_169227_+\|NAD-dependent-formate-dehydrogenase	unknown	unknown	gnl\|CDD\|181041
CP027486.1\|AVO67742.1\|161434_162394_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
CP027486.1\|AVO67747.1\|165646_166408_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
CP027486.1\|AVO67750.1\|169612_170863_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
CP027486.1\|AVO67741.1\|159300_160788_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143435
CP027486.1\|AVO67749.1\|167668_168028_+\|DUF2294-domain-containing-protein	unknown	unknown	gnl\|CDD\|227896
CP027486.1\|AVO67733.1\|151688_152894_+\|capsular-biosynthesis-protein	unknown	unknown	unknown
CP027486.1\|AVO67744.1\|163070_163583_+\|DUF4242-domain-containing-protein	unknown	unknown	gnl\|CDD\|379428
CP027486.1\|AVO67748.1\|166420_167452_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
CP027486.1\|AVO67740.1\|158490_158874_-\|DUF454-domain-containing-protein	unknown	unknown	gnl\|CDD\|377291
CP027486.1\|AVO67746.1\|164678_165650_+\|nitrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270271

Protein	Function_ID	Function_description	E-value
CP027486.1\|AVO67739.1\|158157_158484_-\|staphylobilin-forming-heme-oxygenase-IsdI	gnl\|CDD\|183968	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI.	1.40112e-64
CP027486.1\|AVO67738.1\|156947_158093_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	0
CP027486.1\|AVO67737.1\|155608_156871_+\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	0
CP027486.1\|AVO67734.1\|152894_154100_+\|glycosyltransferase-WbuB	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	3.56278e-74
CP027486.1\|AVO67751.1\|171309_178485_+\|D-alanine--poly(phosphoribitol)-ligase-subunit-DltA	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
CP027486.1\|AVO67735.1\|154110_154668_+\|sugar-transferase	gnl\|CDD\|225059	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane].	3.08096e-87
CP027486.1\|AVO67745.1\|163924_164665_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	2.18703e-112
CP027486.1\|AVO67736.1\|154667_155555_+\|UDP-glucose-4-epimerase	gnl\|CDD\|187543	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.93098e-117
CP027486.1\|AVO70218.1\|168201_169227_+\|NAD-dependent-formate-dehydrogenase	gnl\|CDD\|181041	PRK07574, PRK07574, NAD-dependent formate dehydrogenase.	0
CP027486.1\|AVO67742.1\|161434_162394_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	4.11026e-108
CP027486.1\|AVO67747.1\|165646_166408_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.22607e-73
CP027486.1\|AVO67750.1\|169612_170863_+\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.61322e-72
CP027486.1\|AVO67741.1\|159300_160788_+\|aldehyde-dehydrogenase	gnl\|CDD\|143435	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.	0
CP027486.1\|AVO67749.1\|167668_168028_+\|DUF2294-domain-containing-protein	gnl\|CDD\|227896	COG5609, COG5609, Uncharacterized conserved protein [Function unknown].	6.06834e-49
CP027486.1\|AVO67744.1\|163070_163583_+\|DUF4242-domain-containing-protein	gnl\|CDD\|379428	pfam14026, DUF4242, Protein of unknown function (DUF4242). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 90 and 170 amino acids in length. There is a single completely conserved residue C that may be functionally important.	2.56603e-26
CP027486.1\|AVO67748.1\|166420_167452_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	2.67474e-20
CP027486.1\|AVO67740.1\|158490_158874_-\|DUF454-domain-containing-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	5.80598e-41
CP027486.1\|AVO67746.1\|164678_165650_+\|nitrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.75927e-52

>CP027486.1|AVO67742.1|161434_162394_+|cation-transporter
MNGKKANTINRYKYFHHVNHQKIQQSSKKTLWASLIITLLFTVIEFVGGLVSNSLALLSDSFHMLSDVLALGLSMLAIYFASKKPTARYTFGYLRFEILVAFLNGLALIVISIWILYEAIVRIIYPQPIESGIMFMIASIGLLVNIILTIILVRSLKQEDNINIQSALWHFMGDLLNSIGVIVAVVLIYFTGWRIIDPIISIVISLIILRGGYKITRNAWLILMESVPQHLDTDQIMADIKNIDGILDVHEFHLWSITTEHYSLSAHVVLDKKYEGDDYQAIDQVSSLLKEKYGIAHSTLQIENLQLNPLDEPYFDKLT
>CP027486.1|AVO67741.1|159300_160788_+|aldehyde-dehydrogenase
MAVNVRDYIAENYGLFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAFESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIETEEGTVNDIDKDTMSIVRHEPIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEVLPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQDEATQMGSQTGKDQLDKIQSYIDAAKESDAQILAGGHRLTENGLDKGFFFEPTLIAVPDNHHKLAQEEIFGPVLTVIKVKDDQEAIDIANDSEYGLAGGVFSQNITRALNIAKAVRTGRIWINTYNQVPEGAPFGGYKKSGIGRETYKGALSNYQQVKNIYIDTSNALKGLY
>CP027486.1|AVO67740.1|158490_158874_-|DUF454-domain-containing-protein
MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIGFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKSNHKIEE
>CP027486.1|AVO67739.1|158157_158484_-|staphylobilin-forming-heme-oxygenase-IsdI
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
>CP027486.1|AVO67738.1|156947_158093_+|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQADHDLNIMQDQQTLADLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFITGNTVIDALSTTVQNDFVSTIINKHKGKKVILLTAHRRENIGEPMHQIFKAVRDLADEYKDVVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRSDKPDEFVPLRHK
>CP027486.1|AVO67737.1|155608_156871_+|nucleotide-sugar-dehydrogenase
MKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQSGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLEKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDICLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKYVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANKHPRVNIHQPGPGVGGHCLAVDPYFIIAKDPENAKLIQTGREINNSMPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSHAVKDASLVLILSDHSEFKNLSDSHFDKMKHKVIFDTKNVVKSSFEDVSYYNYGNIFNFIDK
>CP027486.1|AVO67736.1|154667_155555_+|UDP-glucose-4-epimerase
MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSVLNKYFNKLSVFRKLFGNLTYSNTLYENNNALEVIPGKMSLVIADIMDETTTKDKA
>CP027486.1|AVO67735.1|154110_154668_+|sugar-transferase
MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFKQKRPTINNELFNIYKFRSMKIDTPNVATDLMDSTSYITKTGKVIRKTSIDELPQLLNVLKGEMSIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYDHYYLTHQSMMLDMYIIYKTIKNIVTSEGVHH
>CP027486.1|AVO67734.1|152894_154100_+|glycosyltransferase-WbuB
MSEKKILILCQYFYPEYVSSATLPTQLAEDLIANHINVDVMCGWPYEYSNHKQVSKTEMHRGIRIRRLKYSRFNNKSKVGRIINFFSLFSKFVINIPKMLKYDQILVYSNPPILPLIPDVLHRLLKKKYSFVVYDIAPDNAIKTGATRPGSMIDKLMRYINRHVYKNAENVIVLGTEMKNYLLNHQISKNADNIHVIPNWYDMRQLQDNRIYNDTFKAYREQYDKILLYSGNMGQLQDMETLISFLKLNKDQPQTLTILCGHGKKFADVKTAIEDHRIENVKMFEFLTGTDYADVLKIADVCIASLIKEGVGLGVPSKNYGYLAAKKPLVLIMDKQSDIVQHVEQYDAGIQIDNGDAHAIYNFINTHSSKELHEMGERAHQLFKDKYTREINTMKYYNLLK
>CP027486.1|AVO67733.1|151688_152894_+|capsular-biosynthesis-protein
MVKKVFIMDSVKTIIGTLLIALGLQFLAYPIINQRVGNEAFGSILTIYTIITITSVVLGNTLNNIRLINMNLYKSNHYYWKFVSILLISILIESIALIIVFLYFFNLNTIDIIFLILLNILMCLRIYLNVFFRMTLKYNQILYIALIQFLGLLIGLFLYYLIQNWIVCFITSELFATIYTLVKLRGLTIGEYQSEDNNVVKDYVMLLSTNSLNNLNLYLDRLILLPIIGGTAVTISFLSTFIGKMLATFLYPINNVVLSYISVNESDNIKKQYLKTNLFAIAALCLVMIICYPITLIIVSLLYNIDSSLYSKFIILGNIGVLFNAVSIMIQTLNTKHASITLQANYMTLHTITFIFITILMTIAFGLNGFFWTTLFSNIIKYVILNIIGLKSKFINKKDVD
>CP027486.1|AVO67743.1|162688_162892_-|hypothetical-protein
MDKESVVASLARNKKIAVETMAGQRYIIERILHTNDEKHIHILKPKDVVLDVDSIKEIDENHLNDAT
>CP027486.1|AVO67744.1|163070_163583_+|DUF4242-domain-containing-protein
MTLFLLEANNLDFASTKEELEAKAASLSTKTIPTLIEVQATENLTHGYFIVEANDEAEAKQFLTEADISIQLVKEVRLVGKDLDEVKNGDAHVDYLVTWNIPEGITMDQYLARKKKNSVHYEEVPEVEFKRTYVCEDMSKCICLYNAPDEEAVRRARKAVDTPIDGIEKL
>CP027486.1|AVO67745.1|163924_164665_+|ABC-transporter-ATP-binding-protein
MIKIQQLQHHFGSHKVIHNFNLDISKGEIVTFIGKSGCGKSTLLNVIGGFIHPSSGRVIIDNEIKQQPSPDCLMLFQHHNLLPWKTINDNIRIGFQQKISDEEINAQLKLVDLEDRGKHFPEQLSGGMKQRVALCRAHVHKPNVILMDEPLGALDAFTRYKLQDQLVQLKHKTQSTIILVTHDIDEAIYLSDRIVLLGEGCNIISQYEITASHPRSRNDSHLLKIRNEIMETFALNHHQVEPEYYL
>CP027486.1|AVO67746.1|164678_165650_+|nitrate-ABC-transporter-substrate-binding-protein
MKRLSIIVIIGIFIITGCDWQRTSKEPSKNAQNQQVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGMHLNEFNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEMSPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQSRDVLTQSAAWTSYGDLTIKPSGYQEITTLVKQHHLFNPPAYDDFVEPSLYKEASRS
>CP027486.1|AVO67747.1|165646_166408_+|ABC-transporter-permease
MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPGPALVGKSIWTFIVTGEIFQHLAISLWRFVAGFVVALLVAIPLGFLLGRNRWLYNAIEPLFQLIRPISPIAWAPFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIAANLNLTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE
>CP027486.1|AVO67748.1|166420_167452_+|acyl-CoA-dehydrogenase
MTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTTGFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTYVDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNGSATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNAQNGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLSELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
>CP027486.1|AVO67749.1|167668_168028_+|DUF2294-domain-containing-protein
MNTIDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
>CP027486.1|AVO70218.1|168201_169227_+|NAD-dependent-formate-dehydrogenase
MKIVALFPEAVEGQENQLLNTKKAIGLKTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGVGSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQVGNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVSSSDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAGDVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDIIVASGRIASKSYTAK
>CP027486.1|AVO67750.1|169612_170863_+|MFS-transporter
MKRLSTTLKVRLISNFLQLIITTAFIPFIALYLTDMLSQSIVGIYLVGLVVLKFPLSIISGYLIEIFPKKLLVLIYQATMVIMLVFMGVFGSHQLWQIIGFCVAYAIFTIVWGLQFPVMDTLIMDAITEDVEHYIYKISYWMTNLSVAIGALLGGLMYGYSMLLLFLIAACIFLIVLFILYIWLPQDRNQVKQSDDKRHASRYQKLQIMNIFRSYKLVLKDRNYMLLISGFSIIMMGEFSISSYIAIRLKDQFETISIGSYDITGAKMLAILLMINTVVVILLTYSISKVVLKIDFKKALITGLLIYIVGYSGLTYLNQFGLLVVFMIIATVGEIIYSPIVSEQRFKIIPKAKRGTYSAVNALGIHFSETLARLGIVLGVFLTSLQMGLYMFIVLTIGASMLVAGVFGGQKQVNTN
>CP027486.1|AVO67751.1|171309_178485_+|D-alanine--poly(phosphoribitol)-ligase-subunit-DltA
MIMGNLRFQQEYFRIYKNNTESTTHRNAYWVKLAKNVEATKMMYALSTIVQQHASIRHFFDVTTDDNLTMILHEFLPFIEIKQVPSSSANYDLEAFFKQELSTYHFNDSPLFKVKLFQFADAAYILLDFHVSIFDDSQIDIFLDDLCNAYRGNTVINNTRQHAHINRNDDKDNQDASHIALDSNYFRLENNSDIHIDSYFPIKHPFEQALYQTYLIDDMTSIDMASLAVSVYLANHIMSQQHDVTLGIHVPSHLPNDLHGNIVPLTLTIDAKDVCQRFTTDFNKCVLQNMSQLQCAKSSLSLETIFHCYHHMMSCCNDVIEDVHQIHDAHTSLADIEIFPHQHGFKIIYNSAAYDLLSIETLSDLVRNIYLQITEENGNKRTTVDELNLMTERDIQLYDDINLSLPEIDDAQTVVTLFEQQVEATPNHVAVQFDGVFITYQTLNARANDLAHRLRNQYGVEPNDRVAVIAEKSIEMIIAMIGVLKAGGAYVPIDPNYPSDRQEYILKDATPKVVITYQALYENGKQNINHIDLNKIAWKNIDNLSKCNTLEDHAYVIYTSGTTGNPKGTLIPHRGIVRLVHRNHYVPLNEETTILLSGTIAFDAATFEIYGALLNGGKLIVAKKEQLLNPIAVEQLINENDVNTMWLTSSLFNQIASERIEVLVPLKYLLIGGEVLNAKWVDLLNQKPKHPQIINGYGPTENTTFTTTYNIPNKVPNRIPIGKPILGTHVYIMQGERRCGVGIPGELCTSGFGLAAGYLNQPELTADKFIKDSNINQLMHRSGDIVRLLPDGNIDYLYRKDKQVKIRGFRIELLEVEHALERIQGINKAVVIVQNHDQDQYIVAYYEAMHTLSHNKIKSQLRMTLPEYMIPVNFMHIEQIPITINGKLDKKALPIMDYVDTDAYVAPSTDTEHLLCQIFADILHVNQVGIHDNFFELGGHSLKATLVVNRIEASTGKRLQIGDLLQKPTVFELAQAIAKVQEQNYEVIPEAIVKDDYVLSSAQKRMYLLWKSNHKDTVYNVPFLWRLSSGLNVAQLQQAVQHLIARHEILRTQYIVVDDEVRQRIVADVVADFEEVNTHFTDEQEIMRQFVAPFNLEKPSQIRVRYIRSPLHAYLFIDTHHIINDGMSNIQLMNDLNALYQHKLLLPLKLQYKDYSEWMSHRDMTKHRQYWLSQFKDEVPILSLPTDYVRPNIKTTNGAMMSFTMNQQMRQLLQKYVEKHQITDFMFFMSVVMTLLSRYARKDDVVVGSVMSARMHKGTEQMLGMFANTLVYRGQPSPDKMWTQFLQEVKEMSLEAYEHQEYPFECLVNDLDQSHDASRNPLFDVMLVLQNNETNHAHFGHSKLTHIQPKSVTAKFDLSFIIEEDRDDYTINIEYNTDLYHSETVRHMGNQCMIMIDYILKHQDTLQICDIPNGTEELLNWVNTHVNDRMLNVPGNKSIISYFNEVVSRQGNHVALVMNDLTMTYETLRNYVDAIAHMLLSNGVGNGQRVALFTERSFEMIAAMLATVKVGASYIPIDIDFPNKRQGAILEDAKVTAVMSYGVEIETTLPVIQLENAKGFVESKENEQYDDLHGNQLENTAMLDNEMYAIYTSGTTGMPKGVAIRQRNLLNLVHAWSTELQLGDNEVFLQHANIVFDASVMEIYCCLLNGHTLVIPDREERVNPEQLQQLINKHRVTVASIPLQMCSIMEDFYIEKLITGGATSTASFVKYIEKHCGTYFNAYGPSESTVITSYWSHHCGDLIPETIPIGKPLSNIQVYIMSDGLLCGIGMPGELCIAGDSLAIGYINRPELMADKWQNNPFGKGKLYHSGDLARYTSDGQIEFLGRIDKQVKVNGYRIELDEIENVILAIRGISDCVVTVSHFDTHDILNAYYVGEQQVEQDLKQYLNDQLPKYMIPKTITHIDCMPLTTNDKVDTTRLPNPSPIQQSNKVYSEPSNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYKTVRQIVNYMYQNQQSLVALPDNLSELQKIVMSRYNLGILEDSLSHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKEIELVSDESFNEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNK

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Crispr_ID: CP027486_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027486_2

400586-400687

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027486_2

>merge|CP027486|2|400586-400687|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>CP027486|2|2|400586-400687|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP027486.1\|AVO67948.1\|392532_393114_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
CP027486.1\|AVO67957.1\|401706_402369_-\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO67949.1\|393179_393563_-\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO67959.1\|403431_404010_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
CP027486.1\|AVO67953.1\|397502_398258_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
CP027486.1\|AVO67954.1\|398337_399726_-\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
CP027486.1\|AVO67950.1\|393832_394459_-\|NDxxF-motif-lipoprotein	unknown	unknown	gnl\|CDD\|380196
CP027486.1\|AVO67952.1\|396441_397011_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
CP027486.1\|AVO67958.1\|402511_402919_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
CP027486.1\|AVO67961.1\|405315_406782_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
CP027486.1\|AVO67962.1\|406806_408348_+\|GMP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|234614
CP027486.1\|AVO67955.1\|399810_399909_+\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO67963.1\|408460_408997_-\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO67965.1\|410491_410764_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225511
CP027486.1\|AVO67960.1\|404009_405278_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
CP027486.1\|AVO67956.1\|400119_400377_-\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO67947.1\|392145_392355_-\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO67964.1\|409388_410093_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
CP027486.1\|AVO67966.1\|410804_411044_-\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO67951.1\|394902_396426_-\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942

Protein	Function_ID	Function_description	E-value
CP027486.1\|AVO67948.1\|392532_393114_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.4566e-49
CP027486.1\|AVO67959.1\|403431_404010_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.01486e-119
CP027486.1\|AVO67953.1\|397502_398258_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	4.50551e-88
CP027486.1\|AVO67954.1\|398337_399726_-\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
CP027486.1\|AVO67965.1\|410491_410764_-\|hypothetical-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.24121e-10
CP027486.1\|AVO67952.1\|396441_397011_-\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
CP027486.1\|AVO67958.1\|402511_402919_-\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.17298e-12
CP027486.1\|AVO67961.1\|405315_406782_+\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
CP027486.1\|AVO67962.1\|406806_408348_+\|GMP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
CP027486.1\|AVO67960.1\|404009_405278_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	5.74823e-170
CP027486.1\|AVO67950.1\|393832_394459_-\|NDxxF-motif-lipoprotein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.15385e-71
CP027486.1\|AVO67964.1\|409388_410093_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	5.38181e-08
CP027486.1\|AVO67951.1\|394902_396426_-\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0

>CP027486.1|AVO67956.1|400119_400377_-|hypothetical-protein
MLVNDESHKGTLIFTFTTNAFFLKQKYLFTVAFELPPAHTNPQKMLILIRQNFLQRVCSKRLFKVDHLLSFYSINMRLAIFIKPS
>CP027486.1|AVO67955.1|399810_399909_+|hypothetical-protein
MQLNVNMMKFDRWHKGICKQIVLNLVEKGEKG
>CP027486.1|AVO67954.1|398337_399726_-|L-cystine-transporter
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLVYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFESNDNAALTSH
>CP027486.1|AVO67953.1|397502_398258_+|NADPH-dependent-oxidoreductase
MSDYVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>CP027486.1|AVO67952.1|396441_397011_-|peroxiredoxin
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>CP027486.1|AVO67951.1|394902_396426_-|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDEKSKELKELLTEISDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKNLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMSTGEEHLLNLDGIFVQIGLLPNTSWLKDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>CP027486.1|AVO67950.1|393832_394459_-|NDxxF-motif-lipoprotein
MKKRLLLSTFLASALILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>CP027486.1|AVO67949.1|393179_393563_-|hypothetical-protein
MKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIILMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFISAIITLAIGGKSVDKNDSH
>CP027486.1|AVO67948.1|392532_393114_+|histidine-phosphatase-family-protein
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYEKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAHQVVIRCLMVYFNKVSREEAVDLKVENCKPYIIE
>CP027486.1|AVO67947.1|392145_392355_-|hypothetical-protein
MTTQSFIFMNIILLDGATQRHPFFICQILAFLFPKFPHINLLLFYPILSTFSNIIIHIDHFHANKKDDN
>CP027486.1|AVO67957.1|401706_402369_-|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>CP027486.1|AVO67958.1|402511_402919_-|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHKEVQEHNSAYEEIDITHFAEASKGPKA
>CP027486.1|AVO67959.1|403431_404010_+|xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE
>CP027486.1|AVO67960.1|404009_405278_+|purine-permease
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILVLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>CP027486.1|AVO67961.1|405315_406782_+|IMP-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDAIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>CP027486.1|AVO67962.1|406806_408348_+|GMP-synthase-(glutamine-hydrolyzing)
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCKGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>CP027486.1|AVO67963.1|408460_408997_-|hypothetical-protein
MHNKNEFNKKLKDFIGSDKRMALVKGYINEYKLTTVLRALNNSDYTKGTIHTRSIGNLKQIVDNRIIPKNITQNKIFKLSNLTLEVNLYERNTIYHGDFAIYYPVESALIIETDTPRLINHINNNPVQKIFIITTNDWSFNTLELEKIVDETIIYDLKQEDPKQYEILYKNKHGKLPY
>CP027486.1|AVO67964.1|409388_410093_-|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYKSFSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESVLNLTATDLKKQIIDISSKVQALTQKYRDIDIKLSTEDKKLLSNLNQKANELYRVIGVYSKHKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
>CP027486.1|AVO67965.1|410491_410764_-|hypothetical-protein
MTKERRTFSSEFKLQMVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNHQDNLKXDEKELIKLRKEVQHLKMEHDVLKQILKLI
>CP027486.1|AVO67966.1|410804_411044_-|hypothetical-protein
MKTKNLNNFIYSISNLRNAIKDNALFHNYISQETKTFQTSLNPSIAHSLKHKAITMNDQNSLRTYDVSVNRLHLIEQIL

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Crispr_ID: CP027486_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027486_3

628773-628867

Orphan

Consensus_repeat	Method
TTCAGAATTTTATCACTAAAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027486_3

>merge|CP027486|3|628773-628867|CRISPRCasFinder
TTCAGAATTTTATCACTAAAAATTTTTAAATCAACCCTCCCCATTTAACCTTTTTCCGCTTTATTCCCATTTTTCCGAATTTTATCACTAAAAAT

>CP027486|3|3|628773-628867|CRISPRCasFinder
TTCAGAATTTTATCACTAAAAAT	TTTTAAATCAACCCTCCCCATTTAACCTTTTTCCGCTTTATTCCCATTT
TTCCGAATTTTATCACTAAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP027486.1\|AVO68158.1\|623737_624457_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
CP027486.1\|AVO68157.1\|620809_621445_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|225140
CP027486.1\|AVO68162.1\|626929_627718_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP027486.1\|AVO68165.1\|630487_630712_-\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
CP027486.1\|AVO68160.1\|625376_625883_+\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO68172.1\|636311_636794_+\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|181598
CP027486.1\|AVO68159.1\|624440_625241_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP027486.1\|AVO68167.1\|631090_631651_+\|recombinase	unknown	unknown	gnl\|CDD\|271192
CP027486.1\|AVO70237.1\|622732_623683_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
CP027486.1\|AVO68156.1\|618878_620540_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
CP027486.1\|AVO68166.1\|630728_630932_-\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO68163.1\|627969_628344_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944
CP027486.1\|AVO68173.1\|636790_637093_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|183657
CP027486.1\|AVO68169.1\|634058_634484_+\|Na(+)/H(+)-antiporter-subunit-B	unknown	unknown	gnl\|CDD\|183603
CP027486.1\|AVO68170.1\|634480_634825_+\|antiporter	unknown	unknown	gnl\|CDD\|183660
CP027486.1\|AVO68164.1\|629363_630293_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225778
CP027486.1\|AVO68161.1\|626044_626761_+\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO70236.1\|621756_622584_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238563
CP027486.1\|AVO68171.1\|634814_636311_+\|Na+/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|237163
CP027486.1\|AVO68168.1\|631669_634072_+\|monovalent-cation/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|183646

Protein	Function_ID	Function_description	E-value
CP027486.1\|AVO68158.1\|623737_624457_+\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	3.6864e-38
CP027486.1\|AVO68157.1\|620809_621445_+\|endonuclease-III	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	2.07839e-92
CP027486.1\|AVO68162.1\|626929_627718_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	9.91231e-35
CP027486.1\|AVO68165.1\|630487_630712_-\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	1.74707e-13
CP027486.1\|AVO68159.1\|624440_625241_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.45049e-26
CP027486.1\|AVO68172.1\|636311_636794_+\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|181598	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed.	4.48395e-49
CP027486.1\|AVO68167.1\|631090_631651_+\|recombinase	gnl\|CDD\|271192	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	2.69418e-31
CP027486.1\|AVO70237.1\|622732_623683_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	6.43614e-48
CP027486.1\|AVO68156.1\|618878_620540_+\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
CP027486.1\|AVO68163.1\|627969_628344_-\|transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.77309e-26
CP027486.1\|AVO68173.1\|636790_637093_+\|cation:proton-antiporter	gnl\|CDD\|183657	PRK12657, PRK12657, putative monovalent cation/H+ antiporter subunit F; Reviewed.	4.13891e-41
CP027486.1\|AVO68169.1\|634058_634484_+\|Na(+)/H(+)-antiporter-subunit-B	gnl\|CDD\|183603	PRK12574, PRK12574, monovalent cation/H+ antiporter subunit B.	1.94472e-64
CP027486.1\|AVO68170.1\|634480_634825_+\|antiporter	gnl\|CDD\|183660	PRK12660, PRK12660, putative monovalent cation/H+ antiporter subunit C; Reviewed.	2.66806e-57
CP027486.1\|AVO68164.1\|629363_630293_-\|hypothetical-protein	gnl\|CDD\|225778	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown].	8.04236e-37
CP027486.1\|AVO70236.1\|621756_622584_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	1.56172e-72
CP027486.1\|AVO68171.1\|634814_636311_+\|Na+/H+-antiporter-subunit-D	gnl\|CDD\|237163	PRK12663, PRK12663, Na+/H+ antiporter subunit D.	0
CP027486.1\|AVO68168.1\|631669_634072_+\|monovalent-cation/H+-antiporter-subunit-A	gnl\|CDD\|183646	PRK12646, PRK12646, DUF4040 family protein.	0

>CP027486.1|AVO68163.1|627969_628344_-|transcriptional-regulator
MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
>CP027486.1|AVO68162.1|626929_627718_+|alpha/beta-hydrolase
MNKVTINPQIQLTYQIEGKGDPIILLHGLDGNLAGFEDLQHQLASSYKVLTYDLRGHGKSSKSESYDLNDHVEDLKILMEKLNIHEAHILGHDLGGVVAKLFTDKYAYRVKSLTTIASKKDDLIHSFTQLLIQYQDDIAGFNKSEAYILLFSKLFRNQEKTMKWYQKQRIYSIKSEDDSAVAIRSLILHKDEPMYLKKRTCVPTLLINGEHDPLIKDKNHFKLEAHFLNVTKKIFEHSGHAPHIEEPEAFMNYYLNFLKSVS
>CP027486.1|AVO68161.1|626044_626761_+|hypothetical-protein
MRINDKILLENIEDYFNHKGLSPHLIDDIKEKVITDIKNSEKKDQDYIEYKRKSPAQIILMIQRNLFALQMNPVIFFIINFILISYLYDKQYVQFQAITGMSLFYCLVIFPMTIVVYLRVSQKNYLRSNKIEMIMGTIIAIISLLLIILQAFNITWGVIPITNFGHQFFFFIGIILVIAGIFYKRLEFSGIGLLFCQKTVDAMIHNPQSAQIFSLIIWILLVVLVIYFTIRLSSRTRL
>CP027486.1|AVO68160.1|625376_625883_+|hypothetical-protein
MKKLLTASIIACSVVMGVGLVNTSAEAASGNSIDTVKQLIKGDQSLENVKIGESIKDVLTKYKNPMYSYNEDGTEHYYEFHTKKGMLLVTTDGKKNNGKVTHISMMYNDANGPTYQAVKNYVGKAVTHTEYSKVAGNFGYIEKGKTTYQFASAPKDKNIKLYRIDLEK
>CP027486.1|AVO68159.1|624440_625241_+|alpha/beta-hydrolase
MDLFTRKDGTSIHYSTLGEGYPIVLIHTVLDNYSVFNKLAAQLAKSFQVVLIDLRGHGYSDKPRHIEIKDFSDDIVELLKYLYIEEVAFVCHEMGGIIGADISVRYPEFTSSLMLVNPTSIEGELPEERLFRKYAHIIRNWDPEKQDKFLNKRKYYRPRKMNRFLKHVVDTNEISTKEEIQAVKEVFKNADISQTYRNVVVPTKIIAGEFGERTTRLEAKEVADLIQNADFEVYQESSAFPFVEEQERFVEDTASFINKHHDEKHV
>CP027486.1|AVO68158.1|623737_624457_+|HAD-family-hydrolase
MDLNQIKAVVFDLEGTLLDRVKSREKFIEEQYERFHDYLIHVQLADFKKAFIELDDDEDNDKPDLYKEIIKRFHVDRLTWKDLFNDFEMHFYRYVFPYYDTLYTLEKLSQKGFQIGVIANGKSKIKQFRLHSLGLMHVINYLSTSETVGFRKPHPKIFEDMIDQLGVLPEQIMYVGDDALNDVAPARAMGMVSVWYKQEDAEIEPLEEEVDFTITTVEELLTILPIKNDNKGENYGSIY
>CP027486.1|AVO70237.1|622732_623683_+|iron-ABC-transporter-permease
MTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVIGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH
>CP027486.1|AVO70236.1|621756_622584_+|ABC-transporter-substrate-binding-protein
MKDNDKQGSDDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKEGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
>CP027486.1|AVO68157.1|620809_621445_+|endonuclease-III
MLGTDELYKLLYRHMGPQNWWPADNDIELMLGAILVQNTRWRNAEIALNQIKEHTHFNPNHILELPIETLQSLIHSSGFYKSKTLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENXKNYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
>CP027486.1|AVO68156.1|618878_620540_+|arginine--tRNA-ligase
MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDYATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAIIPEAIEKGDQFGHVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTAAGYNVTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKHPEIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAKMKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILIDLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLREIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAKEQGIEVTAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLAAHFHKFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM
>CP027486.1|AVO68164.1|629363_630293_-|hypothetical-protein
MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFTIHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLFGATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTTINSALASHTHSPAFASLVSFTIGSITLLILTAIFNSSLKLKTSHLKFGKLKPIYFTGGILGMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCILTGIILLRLF
>CP027486.1|AVO68165.1|630487_630712_-|DUF2922-domain-containing-protein
MTKTLELSFKSSLDKPVKLQLPQLNNVVTEQVARDSMNALVDLNIIKSNSGTITKVHSAQIIDKTTTVLFEDKK
>CP027486.1|AVO68166.1|630728_630932_-|hypothetical-protein
MSKINHITIVLSFTKVDANGKQTEFKRRFANINPDASNDQIKTFSKLIERLTGETYNNIELIKSLSI
>CP027486.1|AVO68167.1|631090_631651_+|recombinase
MNKVEAIKFNDDIVKMYEALKIKSERDYLFFKLAIHSGLKVSELLTITVSQVKRLIEKCTLSEMCKAHFHSLIKIRLPETLSKELLQYIEDRSLSNEDVLFQSLRTNQVLSRQQAYRIIHQASIEAGIDNVGLTTLRKTFAYHAYQKGIPIPVIQKYLGHQSAIETLNFIGLENECEHSIYISLQL
>CP027486.1|AVO68168.1|631669_634072_+|monovalent-cation/H+-antiporter-subunit-A
MSLVYLLIAILVIMAMILLMSKRRALAKYAGYIALVAPVISSIYFLIQIPSVAKMQYLSTSIPWIKTLDINLDLRLDGLSLMFSLIISLIGIAVFFYATQYLSSRKDNLPRFYFYLTLFMFSMIGIVLSDNTILMYIFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITDILGQADHIKNHGLFIPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLLRFTPLLGLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGGGYAQHQQDAIASIYVFVLFGALFHLMNHAIFKCALFMGVGILDHEAGSRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQTGQLSQFSLISMIAIVFVGVIASIFTFTYALYMVKEVFWTKYDSKVFTKKNIHEPWLFSLPSLILMVLVPVIFFVPNIFGKGIIVPALRGVSGGNHQIDPLAPHVSQWHGFNIPLLLTIIIILLGSVLAIKVDWKKVFTGKIRQISVSKGYEMVYRHFEKFATKRFKRVMQDRLNQYIIMTLGIFMIIIGYGYIRIGLPKVHQLHVSEFGALEIILAIVTVTIGISLIFIRQRLTMVILNGVIGFVVTLFFIAMKAPDLALTQLVVETITTILFIVSFSRLPNVPRSNANKKREIIKISVSLLMALIVVSLIFITQQTDGLSSISDFYLKADKLTGGKNIVNAILGDFRALDTLFEGLVLIITGLGIYTLLNYQDRRGQDERE
>CP027486.1|AVO68169.1|634058_634484_+|Na(+)/H(+)-antiporter-subunit-B
MKENDVVLRTVTKLVVFILLTFGFYVFFAGHNNPGGGFIGGLIFSSAFILMFLAFNVEEVLESLPIDFRILMIIGALVSSITAIIPMFFGKPFLSQYETTWILPILGQIHVSTITLFELGILFSVVGVIVTVMLSLSGGRS
>CP027486.1|AVO68170.1|634480_634825_+|antiporter
MNLILLLVIGFLXFIGTYMILSINLIRIVIGISIYTHAGNLIIMSMGTYGSSRSEPLITGGNQLFVDPLLQAIVLTAIVIGFGMTAFLLVLVYRTYKVTKEDEIEGLRGEDDAK
>CP027486.1|AVO68171.1|634814_636311_+|Na+/H+-antiporter-subunit-D
MLSNLLILPMLLPFLCALILVFLKNNDRISKYLYLGTMTITTIISLMLLIYVQRHRPITLDFGGWSAPFGIQFLGDSLSLIMVTTASFVITLIMAYGFGRGEHKANRYHLPSFILFLSVGVIGSFLTSDLFNLYVMFEIMLLASFVLITLGQSVEQLRAAIIYVVLNIIGSWLFLLGIGLLYKTVGTLNFSHIAMRLNDMGDNRTVTMISLIFLVAFSAKAALVLFMWLPKAYAVLNTELAALFAALMTKVGAYALIRFFTLLFDQHNDLIHPLLATMAAITMVIGAIGVIAYKDIKKIAAYQVIISIGFIILGLGTNTFAGINGAIFYLVNDIVVKTLLFFIIGSLVYITGYRQYQYLNGLAKKEPLFGVAFIIMIFAIGGVPPFSGFPGKVLIFQGALQNGNYIGLALMIITSLIAMYSLFRILFYMYFGDKDGEEVNFKKIPLYRKRILSILVVVVIAIGIAAPVVLNVTSDATELNTSDQLYQKLVNPHLKGED
>CP027486.1|AVO68172.1|636311_636794_+|Na+/H+-antiporter-subunit-E
MNQIVLNIIIAFLWVLFQDEDHFKFSTFFSGYLIGLIVIYILHRFFSDDFYVRKIWVAIKFLGVYLYQLITSSISTINYILFKTKDMNPGLLSYETRLTSDWAITFLTILIIITPGSTVIRISQDSKKFFIHSIDVSEKEKDSLLRSIKHYEDLILEVSR
>CP027486.1|AVO68173.1|636790_637093_+|cation:proton-antiporter
MIQTITHIMIISSLIIFGIALIICLFRLIKGPTTADRVVTFDTTSAVVMSIVGVLSVLMGTVSFLDSIMLIAIISFVSSVSISRFIGGGHVFNGNNKRNL

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Crispr_ID: CP027486_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027486_4

778761-778839

Unclear

Consensus_repeat	Method
TGTAGAATTTCTTTTCGAAATTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027486_4

>merge|CP027486|4|778761-778839|CRISPRCasFinder
TGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCGCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCT

>CP027486|4|4|778761-778839|CRISPRCasFinder
TGTAGAATTTCTTTTCGAAATTCT	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC
TGTAGAATTTCTTTTCGAAATTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP027486.1\|AVO68310.1\|773594_775580_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
CP027486.1\|AVO68305.1\|769910_771021_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
CP027486.1\|AVO68303.1\|767064_769596_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
CP027486.1\|AVO68304.1\|769637_769742_+\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO68321.1\|788937_789840_-\|epimerase	unknown	unknown	gnl\|CDD\|224015
CP027486.1\|AVO68311.1\|775587_778434_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
CP027486.1\|AVO68308.1\|772442_773093_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|378993
CP027486.1\|AVO68302.1\|766078_766651_+\|ribosomal-subunit-interface-protein	unknown	unknown	gnl\|CDD\|224461
CP027486.1\|AVO68309.1\|773089_773326_+\|DUF2198-domain-containing-protein	unknown	unknown	gnl\|CDD\|227234
CP027486.1\|AVO68307.1\|771429_772269_+\|peptidase-M23	unknown	unknown	gnl\|CDD\|226451
CP027486.1\|AVO68320.1\|788107_788695_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
CP027486.1\|AVO68315.1\|782881_783817_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP027486.1\|AVO68318.1\|785493_786489_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211689
CP027486.1\|AVO68306.1\|771174_771282_+\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO68317.1\|784585_785497_+\|RNase-adaptor-protein-RapZ	unknown	unknown	gnl\|CDD\|224574
CP027486.1\|AVO68314.1\|781375_782815_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276808
CP027486.1\|AVO68312.1\|779097_780030_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
CP027486.1\|AVO68319.1\|786599_787544_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
CP027486.1\|AVO68316.1\|784144_784327_-\|nitrogen-fixation-protein-NifR	unknown	unknown	unknown
CP027486.1\|AVO68313.1\|780035_780875_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527

Protein	Function_ID	Function_description	E-value
CP027486.1\|AVO68310.1\|773594_775580_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP027486.1\|AVO68305.1\|769910_771021_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
CP027486.1\|AVO68303.1\|767064_769596_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
CP027486.1\|AVO68321.1\|788937_789840_-\|epimerase	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	6.73087e-155
CP027486.1\|AVO68311.1\|775587_778434_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP027486.1\|AVO68308.1\|772442_773093_+\|HD-domain-containing-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP027486.1\|AVO68313.1\|780035_780875_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.75588e-120
CP027486.1\|AVO68309.1\|773089_773326_+\|DUF2198-domain-containing-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
CP027486.1\|AVO68307.1\|771429_772269_+\|peptidase-M23	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	2.24685e-42
CP027486.1\|AVO68320.1\|788107_788695_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP027486.1\|AVO68315.1\|782881_783817_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP027486.1\|AVO68318.1\|785493_786489_+\|hypothetical-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	3.05865e-171
CP027486.1\|AVO68317.1\|784585_785497_+\|RNase-adaptor-protein-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP027486.1\|AVO68314.1\|781375_782815_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.14043e-06
CP027486.1\|AVO68312.1\|779097_780030_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP027486.1\|AVO68319.1\|786599_787544_+\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP027486.1\|AVO68302.1\|766078_766651_+\|ribosomal-subunit-interface-protein	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37

>CP027486.1|AVO68311.1|775587_778434_+|excinuclease-ABC-subunit-UvrA
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKLFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIDVPEYRRPASDRKISIRGARSNNLKGIDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP027486.1|AVO68310.1|773594_775580_+|excinuclease-ABC-subunit-UvrB
MVEHYPFKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP027486.1|AVO68309.1|773089_773326_+|DUF2198-domain-containing-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP027486.1|AVO68308.1|772442_773093_+|HD-domain-containing-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP027486.1|AVO68307.1|771429_772269_+|peptidase-M23
MKKTLTVTVSSXLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>CP027486.1|AVO68306.1|771174_771282_+|hypothetical-protein
MCLLKQHMQCAFSNITYGDFQGIELIVENVLNYMV
>CP027486.1|AVO68305.1|769910_771021_+|peptide-chain-release-factor-2
MELSEIKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>CP027486.1|AVO68304.1|769637_769742_+|hypothetical-protein
MLWEESFYFTSVKYFKKCEEVVKRCYVLSFKKSV
>CP027486.1|AVO68303.1|767064_769596_+|preprotein-translocase-subunit-SecA
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>CP027486.1|AVO68302.1|766078_766651_+|ribosomal-subunit-interface-protein
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>CP027486.1|AVO68312.1|779097_780030_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP027486.1|AVO68313.1|780035_780875_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>CP027486.1|AVO68314.1|781375_782815_+|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP027486.1|AVO68315.1|782881_783817_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP027486.1|AVO68316.1|784144_784327_-|nitrogen-fixation-protein-NifR
MSNFYRQCKLGCGPQHREFRKEILQAMRVGVWAPTQKLTISQLTIMCKLGWYNDKVILFL
>CP027486.1|AVO68317.1|784585_785497_+|RNase-adaptor-protein-RapZ
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP027486.1|AVO68318.1|785493_786489_+|hypothetical-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRXFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP027486.1|AVO68319.1|786599_787544_+|DNA-binding-protein-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP027486.1|AVO68320.1|788107_788695_+|ATP-dependent-Clp-protease-proteolytic-subunit
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP027486.1|AVO68321.1|788937_789840_-|epimerase
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGMILSNEGGALQTMKLPYKYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE

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Crispr_ID: CP027486_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027486_6

827686-827764

Orphan

Consensus_repeat	Method
CAGCTTCTGTGTTGGGGCCCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027486_6

>merge|CP027486|6|827686-827764|CRISPRCasFinder
CAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTACCATCAGCTTCTGTGTTGGGGCCCCGC

>CP027486|6|6|827686-827764|CRISPRCasFinder
CAGCTTCTGTGTTGGGGCCCCGC	CAACTTGCACATTATTGTAAGCTGACTTACCAT
CAGCTTCTGTGTTGGGGCCCCGC

Protein	Signature genes	Signature genes Name	Protein_function
CP027486.1\|AVO68353.1\|821853_822348_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|372596
CP027486.1\|AVO68362.1\|827389_827572_+\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO68364.1\|828016_828403_+\|topiosmerase	unknown	unknown	gnl\|CDD\|224572
CP027486.1\|AVO68372.1\|834313_835621_+\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
CP027486.1\|AVO68355.1\|823316_824033_+\|3-dehydroquinase	unknown	unknown	gnl\|CDD\|184156
CP027486.1\|AVO68365.1\|828395_828692_+\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP027486.1\|AVO68356.1\|824115_824655_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
CP027486.1\|AVO68368.1\|830672_831494_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
CP027486.1\|AVO68371.1\|833454_834216_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
CP027486.1\|AVO68358.1\|825269_825626_+\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239334
CP027486.1\|AVO68359.1\|825783_826164_+\|glycine-cleavage-system-protein-H	unknown	unknown	gnl\|CDD\|234918
CP027486.1\|AVO68361.1\|826342_827221_+\|DUF1963-domain-containing-protein	unknown	unknown	gnl\|CDD\|226395
CP027486.1\|AVO68357.1\|824805_825126_-\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP027486.1\|AVO68354.1\|822746_823169_-\|organic-hydroperoxide-reductase-OsmC/OhrA	unknown	unknown	gnl\|CDD\|274649
CP027486.1\|AVO68367.1\|829959_830655_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
CP027486.1\|AVO68360.1\|826227_826341_+\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO68370.1\|832275_833127_-\|DUF368-domain-containing-protein	unknown	unknown	gnl\|CDD\|224946
CP027486.1\|AVO68366.1\|828941_829967_+\|methionine-import-ATP-binding-protein-MetN-2	unknown	unknown	gnl\|CDD\|224058
CP027486.1\|AVO68373.1\|835735_836977_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
CP027486.1\|AVO68369.1\|831847_832042_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777

Protein	Function_ID	Function_description	E-value
CP027486.1\|AVO68353.1\|821853_822348_-\|N-acetyltransferase	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
CP027486.1\|AVO68364.1\|828016_828403_+\|topiosmerase	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36
CP027486.1\|AVO68372.1\|834313_835621_+\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	3.36148e-135
CP027486.1\|AVO68355.1\|823316_824033_+\|3-dehydroquinase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	3.2619e-146
CP027486.1\|AVO68365.1\|828395_828692_+\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
CP027486.1\|AVO68356.1\|824115_824655_+\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
CP027486.1\|AVO68368.1\|830672_831494_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.02861e-112
CP027486.1\|AVO68371.1\|833454_834216_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
CP027486.1\|AVO68358.1\|825269_825626_+\|arsenate-reductase-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
CP027486.1\|AVO68359.1\|825783_826164_+\|glycine-cleavage-system-protein-H	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.01516e-70
CP027486.1\|AVO68361.1\|826342_827221_+\|DUF1963-domain-containing-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	3.13065e-77
CP027486.1\|AVO68357.1\|824805_825126_-\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.4922e-24
CP027486.1\|AVO68354.1\|822746_823169_-\|organic-hydroperoxide-reductase-OsmC/OhrA	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
CP027486.1\|AVO68367.1\|829959_830655_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	7.66296e-99
CP027486.1\|AVO68370.1\|832275_833127_-\|DUF368-domain-containing-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	7.67366e-77
CP027486.1\|AVO68366.1\|828941_829967_+\|methionine-import-ATP-binding-protein-MetN-2	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	2.03316e-170
CP027486.1\|AVO68373.1\|835735_836977_+\|cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
CP027486.1\|AVO68369.1\|831847_832042_+\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07

>CP027486.1|AVO68362.1|827389_827572_+|hypothetical-protein
MHCLQNFFSKFSVLGPLTRIEKSLLQAHFRSVNYCQYNFVEHRTLIYVPACFHKPQLMCI
>CP027486.1|AVO68361.1|826342_827221_+|DUF1963-domain-containing-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLSQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLNDLPEQQELFPVNEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQVHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>CP027486.1|AVO68360.1|826227_826341_+|hypothetical-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGS
>CP027486.1|AVO68359.1|825783_826164_+|glycine-cleavage-system-protein-H
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE
>CP027486.1|AVO68358.1|825269_825626_+|arsenate-reductase-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>CP027486.1|AVO68357.1|824805_825126_-|thioredoxin
MQAIKSNESFKSIINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>CP027486.1|AVO68356.1|824115_824655_+|nitroreductase
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>CP027486.1|AVO68355.1|823316_824033_+|3-dehydroquinase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFINDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIIKHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>CP027486.1|AVO68354.1|822746_823169_-|organic-hydroperoxide-reductase-OsmC/OhrA
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>CP027486.1|AVO68353.1|821853_822348_-|N-acetyltransferase
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>CP027486.1|AVO68364.1|828016_828403_+|topiosmerase
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>CP027486.1|AVO68365.1|828395_828692_+|thioredoxin
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>CP027486.1|AVO68366.1|828941_829967_+|methionine-import-ATP-binding-protein-MetN-2
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEHGPVTQVFENPQHTVTKRFVKEDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>CP027486.1|AVO68367.1|829959_830655_+|ABC-transporter-permease
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWIVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>CP027486.1|AVO68368.1|830672_831494_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYDLDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>CP027486.1|AVO68369.1|831847_832042_+|CsbD-family-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>CP027486.1|AVO68370.1|832275_833127_-|DUF368-domain-containing-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTGLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFTGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>CP027486.1|AVO68371.1|833454_834216_+|Fe-S-cluster-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>CP027486.1|AVO68372.1|834313_835621_+|Fe-S-cluster-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKHFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKNASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>CP027486.1|AVO68373.1|835735_836977_+|cysteine-desulfurase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPMQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDIDQLINALKQTKEFFSYEF

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Crispr_ID: CP027486_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027486_7

1614575-1614659

Orphan

Consensus_repeat	Method
CACCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027486_7

>merge|CP027486|7|1614575-1614659|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGCCTGTAGAA

>CP027486|7|7|1614575-1614659|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA
CACCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP027486.1\|AVO69098.1\|1608230_1609370_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237656
CP027486.1\|AVO69096.1\|1606534_1607287_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|224303
CP027486.1\|AVO69110.1\|1622885_1623470_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627
CP027486.1\|AVO69103.1\|1617000_1617252_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
CP027486.1\|AVO69106.1\|1620533_1620995_-\|ComE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622
CP027486.1\|AVO69094.1\|1604712_1604889_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP027486.1\|AVO69108.1\|1621812_1622529_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
CP027486.1\|AVO69109.1\|1622531_1622885_-\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
CP027486.1\|AVO69107.1\|1621086_1621773_-\|competence-protein-ComE	unknown	unknown	gnl\|CDD\|224472
CP027486.1\|AVO70266.1\|1603785_1604469_-\|serine-protease	unknown	unknown	gnl\|CDD\|223961
CP027486.1\|AVO69097.1\|1607288_1608227_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
CP027486.1\|AVO69111.1\|1623459_1624029_-\|nicotinate-nicotinamide-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|273101
CP027486.1\|AVO69100.1\|1611406_1612033_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237622
CP027486.1\|AVO69095.1\|1605181_1606528_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
CP027486.1\|AVO69104.1\|1617296_1618271_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
CP027486.1\|AVO69101.1\|1612064_1613042_-\|HrcA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273017
CP027486.1\|AVO69099.1\|1609505_1611338_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
CP027486.1\|AVO69102.1\|1614831_1616655_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
CP027486.1\|AVO70267.1\|1613141_1614266_-\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
CP027486.1\|AVO69105.1\|1618327_1620475_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|225212

Protein	Function_ID	Function_description	E-value
CP027486.1\|AVO69098.1\|1608230_1609370_-\|molecular-chaperone-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
CP027486.1\|AVO69096.1\|1606534_1607287_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.90273e-91
CP027486.1\|AVO69110.1\|1622885_1623470_-\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	2.21948e-80
CP027486.1\|AVO69103.1\|1617000_1617252_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17
CP027486.1\|AVO69106.1\|1620533_1620995_-\|ComE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	3.1815e-101
CP027486.1\|AVO69094.1\|1604712_1604889_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10
CP027486.1\|AVO69108.1\|1621812_1622529_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	7.79783e-16
CP027486.1\|AVO69109.1\|1622531_1622885_-\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.95861e-47
CP027486.1\|AVO69107.1\|1621086_1621773_-\|competence-protein-ComE	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	1.06297e-33
CP027486.1\|AVO70266.1\|1603785_1604469_-\|serine-protease	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	8.78003e-63
CP027486.1\|AVO69097.1\|1607288_1608227_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	9.7051e-134
CP027486.1\|AVO69111.1\|1623459_1624029_-\|nicotinate-nicotinamide-nucleotide-adenylyltransferase	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	2.64141e-76
CP027486.1\|AVO69100.1\|1611406_1612033_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	3.74407e-81
CP027486.1\|AVO69095.1\|1605181_1606528_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
CP027486.1\|AVO69104.1\|1617296_1618271_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	4.1415e-104
CP027486.1\|AVO69101.1\|1612064_1613042_-\|HrcA-family-transcriptional-regulator	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	2.05887e-119
CP027486.1\|AVO69099.1\|1609505_1611338_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
CP027486.1\|AVO69102.1\|1614831_1616655_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
CP027486.1\|AVO70267.1\|1613141_1614266_-\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
CP027486.1\|AVO69105.1\|1618327_1620475_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	3.1282e-90

>CP027486.1|AVO70267.1|1613141_1614266_-|oxygen-independent-coproporphyrinogen-III-oxidase
MTVQSAYIHIPFCVRICTYCDFNKYFIQNQPVDEYLDALITEMSTAKYRNLKTMYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLLMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFGQTINNLKEKELIVEKNDAIALTKRGKVIGNEVFEAFLIND
>CP027486.1|AVO69101.1|1612064_1613042_-|HrcA-family-transcriptional-regulator
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>CP027486.1|AVO69100.1|1611406_1612033_-|nucleotide-exchange-factor-GrpE
MTNKDESVEKNTESTVEETNIKQNIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>CP027486.1|AVO69099.1|1609505_1611338_-|molecular-chaperone-DnaK
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>CP027486.1|AVO69098.1|1608230_1609370_-|molecular-chaperone-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>CP027486.1|AVO69097.1|1607288_1608227_-|50S-ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDELDQHNIQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>CP027486.1|AVO69096.1|1606534_1607287_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVVKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSAISYEKELMG
>CP027486.1|AVO69095.1|1605181_1606528_-|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>CP027486.1|AVO69094.1|1604712_1604889_-|30S-ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>CP027486.1|AVO70266.1|1603785_1604469_-|serine-protease
MTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGMILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD
>CP027486.1|AVO69102.1|1614831_1616655_-|elongation-factor-4
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELLPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>CP027486.1|AVO69103.1|1617000_1617252_+|30S-ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>CP027486.1|AVO69104.1|1617296_1618271_-|DNA-polymerase-III-subunit-delta
MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIVDACAETDYKLKSSYMDKQLILELFILSL
>CP027486.1|AVO69105.1|1618327_1620475_-|DNA-internalization-related-competence-protein-ComEC/Rec2
MLSTFLFILLLYITYRKNKIVYAPISLFLIIFSSWYLHYSQQAIFNYINYIERNSQFNERAQVIQIQRQGSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNENKFVTLKLQSIVVQSCLESNRSNLIEKHKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGITIIVLTLYAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIIFIISVYYIFWLLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSSNTLMLLSKLSHNYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSNSYGNASGL
>CP027486.1|AVO69106.1|1620533_1620995_-|ComE-operon-protein-2
MERIKWEEYFMAQSHLPALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>CP027486.1|AVO69107.1|1621086_1621773_-|competence-protein-ComE
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI
>CP027486.1|AVO69108.1|1621812_1622529_-|class-I-SAM-dependent-methyltransferase
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESNILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDTERLFFIAKK
>CP027486.1|AVO69109.1|1622531_1622885_-|ribosome-silencing-factor
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>CP027486.1|AVO69110.1|1622885_1623470_-|HD-domain-containing-protein
MNIEKAKRLAKEKLPEKRYNHSLRVAETAIKLAEIYDGDTSKVELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>CP027486.1|AVO69111.1|1623459_1624029_-|nicotinate-nicotinamide-nucleotide-adenylyltransferase
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHNNFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH

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Crispr_ID: CP027486_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027486_8

1649231-1649427

Orphan

Consensus_repeat	Method
AATTTCTCTATGTTGGGGCCCC	PILER-CR

3 spacers

The CRISPR arrays of CP027486_8

>merge|CP027486|8|1649231-1649427|PILER-CR
AAATTCTCTGTGTTGGGGCCCCATCCCCAACTTGCACATTATTGAAAGCTGACTTTTGGTCAGCTTCTATGTTGGGGGCCCCGTCCCCAACTTCCATTGCCTGTTGAAATTAGGGTTCCAATTTCTCTGTGTTGGGGCCCCGCCAACTTCCATTGCCTGTTGAAATTGGGGTTCCAATTTCTCTATGTTGGGGCCCC

>CP027486|8|1|1649231-1649427|PILER-CR
AAATTCTCTGTGTTGGGGCCCC	ATCCCCAACTTGCACATTATTGAAAGCTGACTTTTGGTCAGCT
TCTATGTTGGGGGCCCCGTCCC	CAACTTCCATTGCCTGTTGAAATTAGGGTTCCAATTTC
TCTGTGTTGGGGCCCCGCCAAC	TTCCATTGCCTGTTGAAATTGGGGTTCCAATTTC
TCTATGTTGGGGCCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP027486.1\|AVO69134.1\|1642481_1642742_-\|IreB-family-regulatory-phosphoprotein	unknown	unknown	gnl\|CDD\|180108
CP027486.1\|AVO69136.1\|1645777_1648255_-\|ATP-dependent-RecD-like-DNA-helicase	unknown	unknown	gnl\|CDD\|273632
CP027486.1\|AVO69138.1\|1649561_1650680_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
CP027486.1\|AVO69133.1\|1642049_1642478_-\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|223886
CP027486.1\|AVO69135.1\|1642804_1645435_-\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
CP027486.1\|AVO69130.1\|1639577_1640501_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
CP027486.1\|AVO69140.1\|1652134_1653148_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
CP027486.1\|AVO69137.1\|1648256_1648925_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
CP027486.1\|AVO69143.1\|1653852_1654275_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
CP027486.1\|AVO69147.1\|1657028_1658795_-\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
CP027486.1\|AVO69144.1\|1654359_1655634_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
CP027486.1\|AVO69142.1\|1653570_1653753_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
CP027486.1\|AVO69146.1\|1656567_1656696_-\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO69141.1\|1653384_1653531_-\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO69139.1\|1650680_1651823_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
CP027486.1\|AVO69129.1\|1638297_1639566_-\|collagenase-like-protease	unknown	unknown	gnl\|CDD\|223896
CP027486.1\|AVO69131.1\|1640503_1641142_-\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
CP027486.1\|AVO69132.1\|1641726_1642035_-\|DUF1292-domain-containing-protein	unknown	unknown	gnl\|CDD\|184235
CP027486.1\|AVO69145.1\|1655794_1656568_-\|tRNA-threonylcarbamoyladenosine-dehydratase	unknown	unknown	gnl\|CDD\|224100
CP027486.1\|AVO69128.1\|1637674_1638298_-\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492

Protein	Function_ID	Function_description	E-value
CP027486.1\|AVO69134.1\|1642481_1642742_-\|IreB-family-regulatory-phosphoprotein	gnl\|CDD\|180108	PRK05473, IreB-like, IreB family regulatory phosphoprotein. IreB (EF1202) was characterized in Enterococcus faecalis as a small protein, well-conserved in the Firmicutes. It belongs to a system that includes the Ser/Thr protein kinase IreK, and phosphatase IreP, undergoes phosphorylation on threonine residues, and is involved in regulating cephalosporin resistance. This family was previously named DUF965 by Pfam model pfam06135.	3.05024e-47
CP027486.1\|AVO69136.1\|1645777_1648255_-\|ATP-dependent-RecD-like-DNA-helicase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0
CP027486.1\|AVO69138.1\|1649561_1650680_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
CP027486.1\|AVO69133.1\|1642049_1642478_-\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|223886	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair].	3.40149e-56
CP027486.1\|AVO69135.1\|1642804_1645435_-\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
CP027486.1\|AVO69130.1\|1639577_1640501_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	7.60817e-104
CP027486.1\|AVO69140.1\|1652134_1653148_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	1.35642e-173
CP027486.1\|AVO69137.1\|1648256_1648925_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	4.6095e-16
CP027486.1\|AVO69143.1\|1653852_1654275_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	5.58388e-46
CP027486.1\|AVO69147.1\|1657028_1658795_-\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
CP027486.1\|AVO69144.1\|1654359_1655634_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
CP027486.1\|AVO69142.1\|1653570_1653753_-\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	4.22501e-07
CP027486.1\|AVO69139.1\|1650680_1651823_-\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	0
CP027486.1\|AVO69129.1\|1638297_1639566_-\|collagenase-like-protease	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	5.98972e-149
CP027486.1\|AVO69131.1\|1640503_1641142_-\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	5.53366e-74
CP027486.1\|AVO69132.1\|1641726_1642035_-\|DUF1292-domain-containing-protein	gnl\|CDD\|184235	PRK13678, PRK13678, hypothetical protein; Provisional.	1.28539e-26
CP027486.1\|AVO69145.1\|1655794_1656568_-\|tRNA-threonylcarbamoyladenosine-dehydratase	gnl\|CDD\|224100	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism].	1.59061e-126
CP027486.1\|AVO69128.1\|1637674_1638298_-\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	5.13835e-138

>CP027486.1|AVO69137.1|1648256_1648925_-|tetratricopeptide-repeat-protein
MIDQQTIYQYIQNGKIEEALQALFGNIEEDPTIIENYINAGIVLADANEIEKAERFFQKALTIDPKNGVVFYNLANVYYNQQRYQEAIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKLALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQLKHVLTIDKNHVDARYNLGLALFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE
>CP027486.1|AVO69136.1|1645777_1648255_-|ATP-dependent-RecD-like-DNA-helicase
MSDPTLFDYSMIKGTVEAILFQNSDNFYTVLKVDTIETNEDFDTMPTVVGFLPNIVEGDVYTFKGQVVDHPRYGKQLKAETFEKEMPQTKEAIISYLSSDLFKGVGKKTAQNIVNTLGDNAINDILDDHSVLEKVSGLSKKKQKQIAEQISANQESEKIMIRLHDLGFGPKLSMAIYQFYLGDTLTILDRNPYQLIYDIKGIGFNKADQLARNIGIAYNDNERLKAALLYTLEEECIKQGHTYLPINVVIDLTVDVLNYQDEEVIEPEKLDEMLQYLNEEKRLIIDNEQVAIPSLYYSEIKSVQNLFRIKTHTNKLTEIEQSDLQMHIGEIEDANQVNYAASQKEALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYVNDDYPVVLAAPTGRASKRLQESTGLEAMTIHRLIGWNQDTKPEDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQLIFVGDEDQLPSVGPGQVFKDLIESKAIPRVNLTEVYRQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQANQIPTVVEKVVTSAVNKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFWAKENALNKDVLVVDFEGNEITFTKQDMMELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKTSLVLLGDPEAFDIGLKTNGQARLTQLCTLLKNYFNSEDEEMLENTATNDTGASQTTIDDQVEAPMSSNDSGEVTSDSTKTDINVLTEATMFKIDPMINMGEITPYDFIER
>CP027486.1|AVO69135.1|1642804_1645435_-|alanine--tRNA-ligase
MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNSQKAIRTNDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRIEGNFWDIGEGPSGPNTEIFYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLKVDMTTFESEMQQQRDRARQARQNSQSMQVQSEVLKNITSASTFVGYDTATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAPFSIELCGGIHVRNTSEIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVVEKLTQLQDEEKALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIVGGKGGGRPDMAQGGGTQPENISKSLSFIKDYIKNL
>CP027486.1|AVO69134.1|1642481_1642742_-|IreB-family-regulatory-phosphoprotein
MENFDKTMKFDYEELPTQDVRDVLNNVYRTLDERGYNAVNQIVGYLLSGDPAYIPRQNEARNQIRHIDRDVIMEELVSYYLKEQNK
>CP027486.1|AVO69133.1|1642049_1642478_-|Holliday-junction-resolvase-RuvX
MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH
>CP027486.1|AVO69132.1|1641726_1642035_-|DUF1292-domain-containing-protein
MTEHNHDSQLEINNEEELLTLFDEEGNEVLYRKVLEFYHPEFKKEYVILAEEGAQSDEDDMIELVPMINEPDESGDGGKLVPIETDEEWDMIEEVVNTEMEE
>CP027486.1|AVO69131.1|1640503_1641142_-|O-methyltransferase
MDDLNKKYLIDLHQHQNSSIEVLREFAEGNEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKGE
>CP027486.1|AVO69130.1|1639577_1640501_-|U32-family-peptidase
MTELLVTPKSLSHMETLIDLGADAFVIGEQKFGLRLPGEFNRQQMTEAVALAHKNDKKVYAAVNGLFHNYHLDAVEDYINFLHEIRVDRIIFGDPAVVMYVKAQENPIPLHWNAETLVTNHFQCNYWGKRGASRAVLARELNLDEIINIKENSNVEIEVQVQGMTCMFQSKRMLLGNYYTFQDRQMKIERRNDEQSLLLYDEERQNNYPVYEDYNGTHIMSPNDICLIEELAPFFEAGIDSFKIDGILQTEEYINVVTEQYRQAIDLYNEDPEIYEDEKFMLIDPIEEIQPDHRPFDEGFLYKQTVY
>CP027486.1|AVO69129.1|1638297_1639566_-|collagenase-like-protease
MKTIEEIKSTPKTVMKKPELLAPAGNLEKLKIAVHYGADAVFLGGQEYGLRSNADNFTMEEIAEGVEFANRYGAKIYVTTNIIAHDENIEGLESYLRNLEKTGATGIIVADPLIIETCKEVAPKLEIHLSTQQSLSNYKAVEYWKEEGLDRVVLARETGAMEMREMKEKVDIEIEAFIHGAMCIAYSGRCTLSNHMTARDSNRGGCCQSCRWDYELLEVDDNGELDVFYNQGEVTPFAMSPKDLKLIESIPQMMDIGVDSLKIEGRMKSIHYIATVVSVYRKVIDAYAADPDNFKINPEWLIELDKCANRDTAPAFFEGTPGYEEQMFGQQQSKKSPFDFCGLVLDYNEDTKIATIQQRNNFKPGQEIEFFGPEIETFTQVVEAIYDEEGNSLDAARHPLQIVQIKVDRPIYPNNMMRKEIG
>CP027486.1|AVO69128.1|1637674_1638298_-|uridine-kinase
MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ
>CP027486.1|AVO69138.1|1649561_1650680_-|tRNA-2-thiouridine(34)-synthase-MnmA
MSNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCTATEDYNDVIEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGADYVATGHYARIHRHEDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLPAQPGDMITLDGKKMGKHSGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGDVCLGGATIDDVFKNEGQLNYVV
>CP027486.1|AVO69139.1|1650680_1651823_-|cysteine-desulfurase
MEIYADYAATTPVKPEVVDAMMMIYNSHYGNPSSIHAKGRDARKYLDESRRQIAQLLGADTHEIIFTSGATESNNTAIKGIVKANEQLGNHIITSKIEHHSVLHVFEQLEREGFDVTYLDVDDTGAIDLDQLEETITDKTILVSIMFVNNEVGTVQQIYDIQDIIAETNAYFHVDAVQAIGHLDVKFDEFEIDAMSITAHKFGGPKGVGALLVKDHVTLDYPQLGGEQELKRRAGTENLAQIVGMAKALQLAEKNRDDNNIHLMNLKEQFLVKLQERAIPFELNGSMTDATGHIVNLYFPFVEVEMMLTLLDMAQIYVSSGSACTAGSTQPSHVLDAMFEDEERSNHSIRFSFNELTTENEINAIVAEIHKIYFKFKEES
>CP027486.1|AVO69140.1|1652134_1653148_+|LLM-class-flavin-dependent-oxidoreductase
MAIKYSALNLVPIREGDDERTAINDMVKLAQHLDELSYERYWIAEHHNAPNLVSSATALLIQHTLEHTKHIRVGSGGIMLPNHAPLIVAEQFGTMATLFPNRVDLGLGRAPGTDMMTASALRRDQHDGVYKFPEEVSLLQQYFGPAHQQAYVRAYPAVGKNVPLYILGSSTDSAHLAARKGLPYVFAGHFAPQQMKEAIEIYKTLFEPSDVLDEPYVIVCLNTIVAENDDEAQYLASSMAQVMVSITRGRMQPVQPPTHDLQNILTPREYAMAMERQKISLIGSENTVQQKIQDFMETYGEVNEIMAISYIYDKDMQLDSYRRFKNVINQINEKNTL
>CP027486.1|AVO69141.1|1653384_1653531_-|hypothetical-protein
MSFMDKAKDAVEKFKNSDNEQVKNVKDKINEYTGSNNEEKKENEDKEK
>CP027486.1|AVO69142.1|1653570_1653753_-|CsbD-family-protein
MADESKFDQFKGNVKETVGNVTDNKELEKEGQQDKATGKAKEVVENAKNKITDAIDKLKK
>CP027486.1|AVO69143.1|1653852_1654275_-|Rrf2-family-transcriptional-regulator
MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPPAQKQLWIRMRDAVRDVLDNTTLKYLAEYVDTSEDLDGYMFYI
>CP027486.1|AVO69144.1|1654359_1655634_+|replication-associated-recombination-protein-A
MSTEPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSEQQLKEIYNNLLKQRP
>CP027486.1|AVO69145.1|1655794_1656568_-|tRNA-threonylcarbamoyladenosine-dehydratase
MKHQFSRNELAIGQQGLDLLKQQTVVILGVGGVGSFAAEALARTNIGHIILIDKDDVDITNVNRQLHALTTTVGQSKVSLMEERIKLINPDCKVTPLHMFYTEETYEEIFDNYDIDYFVDASDTIMYKVHLMKECLDRGIKVISSMGAANKTDPTRFTISDISKTHTDPMAKIIRQKLKKLGIRKGIPVVFSDESPIVIREDVKDIVGDKNAINRKGQMPPSSNAFVPSVVGLICASYVVNDVLKDIPVRRIKDKGQ
>CP027486.1|AVO69146.1|1656567_1656696_-|hypothetical-protein
MGFIAFNKCFLVEFWENNQSDNAKYKILSYYVLMYKSVKEVK
>CP027486.1|AVO69147.1|1657028_1658795_-|aspartate--tRNA-ligase
MSKRTTYCGLVTEAFLGQEITLKGWVNNRRDLGGLIFVDLRDREGIVQVVFNPAFSEEALKIAETVRSEYVVEVQGTVTKRDPETVNPKIKTGQVEVQVTNIKVINKSETPPFSINEENVNVDENIRLKYRYLDLRRQELAQTFKMRHQITRSIRQYLDDEGFFDIETPVLTKSTPEGARDYLVPSRVHDGEFYALPQSPQLFKQLLMISGFDKYYQIVKCFRDEDLRADRQPEFTQVDIEMSFVDQEDVMQMGEEMLKKVVKEVKGVEINGAFPRMTYKEAMRRYGSDKPDTRFEMELIDVSQLGRDMDFKVFKDTVENDGEIKAIVAKGAAEQYTRKDMDALTEFVNIYGAKGLAWVKVVEDGLTGPIGRFFETENVETLLTLTGAEAGDLVMFVADKPNVVAQSLGALRVKLAKELGLIDETKLNFLWVTDWPLLEYDEDAKRYVAAHHPFTSPKEADIAKLGTAPEEAEANAYDIVLNGYELGGGSIRIHDGELQEKMFEVLGFTKEQAQEQFGFLLDAFKYGAPPHGGIALGLDRLVMLLTNRTNLRDTIAFPKTASATCLLTNAPGEVSDKQLEELSLRIRH

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Crispr_ID: CP027486_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027486_9

2033633-2033714

Orphan

Consensus_repeat	Method
GGCCCCCACCCCAACTTACATTGT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP027486_9

>merge|CP027486|9|2033633-2033714|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGTTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCCACCCCAACTTGCATTGT

>CP027486|9|8|2033633-2033714|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGT	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG
GGCCCCCACCCCAACTTGCATTGT

Protein	Signature genes	Signature genes Name	Protein_function
CP027486.1\|AVO69511.1\|2024439_2025372_+\|ATP-dependent-helicase	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235735
CP027486.1\|AVO69514.1\|2026204_2027188_+\|glycosyl-transferase-family-A	unknown	unknown	gnl\|CDD\|366154
CP027486.1\|AVO69516.1\|2027503_2028541_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
CP027486.1\|AVO69525.1\|2040077_2040704_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
CP027486.1\|AVO69529.1\|2043385_2043529_+\|cyclic-lactone-autoinducer-peptide	unknown	unknown	gnl\|CDD\|129030
CP027486.1\|AVO69520.1\|2033855_2035163_+\|TrkH-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|273349
CP027486.1\|AVO69521.1\|2035702_2037319_-\|molecular-chaperone-GroEL	unknown	unknown	gnl\|CDD\|234573
CP027486.1\|AVO69523.1\|2037853_2038597_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
CP027486.1\|AVO69528.1\|2042819_2043383_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|226899
CP027486.1\|AVO69527.1\|2042449_2042584_-\|delta-lysin-family-phenol-soluble-modulin	unknown	unknown	gnl\|CDD\|173213
CP027486.1\|AVO69522.1\|2037394_2037679_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
CP027486.1\|AVO69517.1\|2029659_2030676_-\|bi-component-leukocidin-LukGH-subunit-G	unknown	unknown	gnl\|CDD\|369625
CP027486.1\|AVO69515.1\|2027198_2027441_+\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO69526.1\|2041064_2041850_+\|carbon-nitrogen-family-hydrolase	unknown	unknown	gnl\|CDD\|143607
CP027486.1\|AVO69510.1\|2023710_2024424_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
CP027486.1\|AVO69519.1\|2032188_2033412_+\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|181490
CP027486.1\|AVO69524.1\|2038621_2039881_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236768
CP027486.1\|AVO69518.1\|2030697_2031753_-\|bi-component-leukocidin-LukGH-subunit-H	unknown	unknown	gnl\|CDD\|369625
CP027486.1\|AVO69512.1\|2025377_2025719_+\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO69513.1\|2025922_2026105_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP027486.1\|AVO69511.1\|2024439_2025372_+\|ATP-dependent-helicase	gnl\|CDD\|235735	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated.	1.68456e-42
CP027486.1\|AVO69514.1\|2026204_2027188_+\|glycosyl-transferase-family-A	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	7.05982e-26
CP027486.1\|AVO69523.1\|2037853_2038597_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.3956e-11
CP027486.1\|AVO69525.1\|2040077_2040704_+\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	8.42197e-117
CP027486.1\|AVO69529.1\|2043385_2043529_+\|cyclic-lactone-autoinducer-peptide	gnl\|CDD\|129030	smart00794, AgrD, Staphylococcal AgrD protein. This family consists of several AgrD proteins from many Staphylococcus species. The agr locus was initially described in Staphylococcus aureus as an element controlling the production of exoproteins implicated in virulence. Its pattern of action has been shown to be complex, upregulating certain extracellular toxins and enzymes expressed post-exponentially and repressing some exponential-phase surface components. AgrD encodes the precursor of the autoinducing peptide (AIP).The AIP derived from AgrD by the action of AgrB interacts with AgrC in the membrane to activate AgrA, which upregulates transcription both from promoter P2, amplifying the response, and from P3, initiating the production of a novel effector: RNAIII. In S. aureus, delta-hemolysin is the only translation product of RNA III and is not involved in the regulatory functions of the transcript, which is therefore the primary agent for modulating the expression of other operons controlled by agr.	3.13559e-15
CP027486.1\|AVO69520.1\|2033855_2035163_+\|TrkH-family-potassium-uptake-protein	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	7.96864e-82
CP027486.1\|AVO69527.1\|2042449_2042584_-\|delta-lysin-family-phenol-soluble-modulin	gnl\|CDD\|173213	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin.	2.83661e-14
CP027486.1\|AVO69521.1\|2035702_2037319_-\|molecular-chaperone-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
CP027486.1\|AVO69524.1\|2038621_2039881_-\|hypothetical-protein	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	6.51148e-10
CP027486.1\|AVO69528.1\|2042819_2043383_+\|histidine-kinase	gnl\|CDD\|226899	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription].	2.05356e-70
CP027486.1\|AVO69519.1\|2032188_2033412_+\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	0
CP027486.1\|AVO69522.1\|2037394_2037679_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.2208e-43
CP027486.1\|AVO69517.1\|2029659_2030676_-\|bi-component-leukocidin-LukGH-subunit-G	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.05827e-99
CP027486.1\|AVO69526.1\|2041064_2041850_+\|carbon-nitrogen-family-hydrolase	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	1.46673e-125
CP027486.1\|AVO69510.1\|2023710_2024424_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	5.17989e-24
CP027486.1\|AVO69516.1\|2027503_2028541_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	5.76637e-25
CP027486.1\|AVO69518.1\|2030697_2031753_-\|bi-component-leukocidin-LukGH-subunit-H	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.84035e-77

>CP027486.1|AVO69519.1|2032188_2033412_+|succinyl-diaminopimelate-desuccinylase
MTTFSEKEKIQLLADIVELQTENNNEIDVCNYLKDLFDKYDIKSEILKVNEHRANIVAEIGNGSPILALSGHMDVVDAGNQDNWTYPPFQLTEKAGKLYGRGTTDMKGGLMALVITLIELKEQNQLPQGTIRLLATAGEEKEQEGAKLLADKGYLDDVDGLIIAEPTGSGIYYAHKGSMSCKVTATGKAVHSSVPFIGDNAIDTLLEFYNQFKEKYSELKKHDTKHELDVAPMFKSLIGKEISEEDANYASGLTAVCSIINGGKQFNSVPDEASLEFNVRPVPEYDNDFIESFFQNIINDVDSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVEQDEIFVSALVGATDASSFLGDNKDNVDLAIFGPGNPLMAHQIDEYIEKDMYLKYIDIFKEASIQYLKEK
>CP027486.1|AVO69518.1|2030697_2031753_-|bi-component-leukocidin-LukGH-subunit-H
MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKNSTVPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKFESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKFDSTKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLFYRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDILKNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG
>CP027486.1|AVO69517.1|2029659_2030676_-|bi-component-leukocidin-LukGH-subunit-G
MIKQLYKNITICSLAISTALTVFPATSYAKINSEIKAVSEKNLDGDTKMYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGYWNSTLRWPGSYSVSIQNVDDNNNTNVTDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKESNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMGHDHTRQLTNDSDNRTKSEIFSLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDKGKSQFVVHYKRSMDEFKIDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHDVKFVKVLNDNEKK
>CP027486.1|AVO69516.1|2027503_2028541_+|site-specific-integrase
MKTRCYDGKKWQYEFKHEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDNYITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDHSKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIMDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILESM
>CP027486.1|AVO69515.1|2027198_2027441_+|hypothetical-protein
MENFNYNNIKKLVLENVDIDKVKEVYKDYELLNYTIKNQTLYMNDYEVAKVSEKHLNENINNLRGTVNLDEKCILSLTYL
>CP027486.1|AVO69514.1|2026204_2027188_+|glycosyl-transferase-family-A
MKKVSVIMPTFNNGEKLHRTISSVLNQTMKSTDYELIIIDDHSNDNGETLNVIKKYKGLVRFKQLKKNSGNASVPRNTGLKMSKAEYVFFLDSDDLLHERALEDLYNYGKENNSDLXIGKYGVEGKGRSVPKAIFEKGNVAKADIIDNSIFYALSVLKMFKKSVIDKNKIKFKTFSKTAEDQLFTIEFLMNSKNYSIKTDYEYYIVVNDFESSNHLSVNKSTGNQYFATINEIYKAIYKSPIYKNQEKRHQLAGKYTTRLLRHGQKKNFANSKMKYEDKIEWLNNFSKTINKVPRDSDKYVTQIFNLKLEAIRQNDLLAVMIADKLL
>CP027486.1|AVO69513.1|2025922_2026105_+|hypothetical-protein
MKIKNCKIKKETIVYEVLTSGNQPFTYELPKDLSSHNARKYLEFISQKLDGDKLTKEDSL
>CP027486.1|AVO69512.1|2025377_2025719_+|hypothetical-protein
MIKKIFTKKHVFLVIEDENHNHSDAVFGKSILLSIYVGVNKKTNSKSGKFIYLDRSKRIVRQSDITKIESANENDVDFYNLLKKEKEIVYSKNIVDKYNLANYIIYYEVSTKE
>CP027486.1|AVO69511.1|2024439_2025372_+|ATP-dependent-helicase
MKKYDIAVLDFETMNEHMNSPCEVAVSLIKDLSIVKVYSSYINPPNNRYNLKNAKIHKIPEDVILKAPKYPDIYQEILYLLKESHLIIAHNALFDISVLKNTNNYYDLPVPNFMYVDSINIFRSFHAISSFKLENLCSLYDIDKEKLHSAKFDVLALSKMLISLAKNNQHYSVLKLIHYMPKQYIRFSKYSNSPTKLFDSGFQKIHMKISEINKIEVESVIPILKDKNVVFTGNFDTEKQDLMILTRKKGAYIRSDVTAKTDILVEGVQDDKYKDVNGLVSKQRKAREYVGNGAKIQFLNEEDLINLIKE
>CP027486.1|AVO69510.1|2023710_2024424_+|XRE-family-transcriptional-regulator
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSIYNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKVNGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL
>CP027486.1|AVO69520.1|2033855_2035163_+|TrkH-family-potassium-uptake-protein
MNKVHKPLYFYLMLFFSTTIIGALLLYLPFTGKKPISFLDALFIASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNRFLIMVTWNIDEPGGVIKLIKHLAIYSLVTELIGMICLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDYSSDPIVIITISILIIFGGIGHFVVIDFINCKKLSKLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQHMGLVEKIGNSFFQSVTTRTAGFNSIDIASINKSTALMLMLLMFIGGAPLSAAGGIKITTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINPNISLIKLLFEVVSAFGTVGLSMNLTTEYHGITKIIIIFVMLCGKVGLLTLLRTFIPPKSPKNYRYTKGQIYL
>CP027486.1|AVO69521.1|2035702_2037319_-|molecular-chaperone-GroEL
MVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDASIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM
>CP027486.1|AVO69522.1|2037394_2037679_-|co-chaperone-GroES
MLKPIGNRVIIXKKEQEQTTKXGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE
>CP027486.1|AVO69523.1|2037853_2038597_+|CPBP-family-intramembrane-metalloprotease
MTRLWASLLTVIIYILSQFLPLLIVKKLPFVQYSGIELTKAVIYIQLVLFLIAATTIILINLKXKNPTKLELEVKEPKKYIIPWALLGFALVMIYQMVVSIVLTQIYGGQQVSPNTEKLIIIARKIPIFIFFVSIIGPLLEEYVFRKVIFGELFNAIKGNRIVAFIIATTVSSLIFALAHNDFKFIPVYFGMGVIFSLAYVWTKRLAVPIIIHMLQNGFVVIFQLLNPEALKKATEQANFIYHIFIP
>CP027486.1|AVO69524.1|2038621_2039881_-|hypothetical-protein
MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNITSPSVNSEMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNPSPNPKPDPDNPKPKPDPKPDPDKPKPNLDPKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDKPKPNPNPKPDPNKPNPNPSPDPDQPGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNESQRR
>CP027486.1|AVO69525.1|2040077_2040704_+|nitroreductase-family-protein
MGLFKKDKKAMTFDNAMEERRSIYNLKDSISISDDELESMIAHAVKHVPSSFNSQSTRIVLLLNDNNNKFWDNTKAILKEVMGENRDFEPTEQKIDNFKHSYGTILFYEDQDVVSGLQEQMPNYYDNFAIWSTQTNAMHQFAIWTALATKGIGASLQHYNPLVDEMTSKEFNIPKSWKLIAQMPFGDIREAAGEKTFNPVEDRFVIKK
>CP027486.1|AVO69526.1|2041064_2041850_+|carbon-nitrogen-family-hydrolase
MKVQIYQLPIIFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFXKHLAEKYKVDIVAGSVSNIRNYQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGENVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK
>CP027486.1|AVO69527.1|2042449_2042584_-|delta-lysin-family-phenol-soluble-modulin
MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFXKK
>CP027486.1|AVO69528.1|2042819_2043383_+|histidine-kinase
MNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQIIVGNFFKILVTYSISIFLSVFLFTLVTHLSYMLIRYNAHGAHAKSSILCYIQSILTFVFVPYFLINIDINFTYLLALSIIGLISVVIYAPAATKKQPIPIKLVKRKKXLSIIMYLLVLILSLIIHPFYAQFMLLGILVESITLLPIFFPKED
>CP027486.1|AVO69529.1|2043385_2043529_+|cyclic-lactone-autoinducer-peptide
MNTLVNMFFDFIIKLAKAIGIVGGVNACSSLFDEPKVPAELTNLYDK

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Crispr_ID: CP027486_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027486_10

2156440-2156520

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP027486_10

>merge|CP027486|10|2156440-2156520|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTCAACTTTAGTTGTTAGGGGCTTCT

>CP027486|10|9|2156440-2156520|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCATGCGCTTAGCGCAGGCGCTCCTACTTTT
CAACTTTAGTTGTTAGGGGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP027486.1\|AVO69646.1\|2158455_2159313_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
CP027486.1\|AVO69651.1\|2166597_2167032_+\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP027486.1\|AVO69632.1\|2146925_2147636_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP027486.1\|AVO69642.1\|2156855_2156960_-\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO69641.1\|2155331_2156423_+\|transcriptional-regulator	unknown	unknown	unknown
CP027486.1\|AVO69635.1\|2149269_2150643_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
CP027486.1\|AVO69650.1\|2164453_2166586_+\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226234
CP027486.1\|AVO69638.1\|2152949_2153615_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
CP027486.1\|AVO69643.1\|2157392_2157575_-\|hypothetical-protein	unknown	unknown	unknown
CP027486.1\|AVO69634.1\|2148399_2148813_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
CP027486.1\|AVO69647.1\|2159380_2160163_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
CP027486.1\|AVO69633.1\|2147756_2148200_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
CP027486.1\|AVO69639.1\|2153766_2154087_+\|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP027486.1\|AVO69649.1\|2162880_2164419_+\|PTS-mannitol-transporter-subunit-IICBA	unknown	unknown	gnl\|CDD\|225123
CP027486.1\|AVO69644.1\|2157639_2157798_+\|integrase	unknown	unknown	unknown
CP027486.1\|AVO69637.1\|2151575_2152514_-\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
CP027486.1\|AVO69640.1\|2154088_2155066_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
CP027486.1\|AVO69645.1\|2158234_2158327_+\|erm-Leader-peptide	unknown	unknown	unknown
CP027486.1\|AVO69648.1\|2160394_2162200_-\|glutamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
CP027486.1\|AVO69636.1\|2151314_2151545_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP027486.1\|AVO69646.1\|2158455_2159313_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	6.8047e-59
CP027486.1\|AVO69632.1\|2146925_2147636_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP027486.1\|AVO69635.1\|2149269_2150643_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	4.11455e-06
CP027486.1\|AVO69650.1\|2164453_2166586_+\|PRD-domain-containing-protein	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.02509e-68
CP027486.1\|AVO69638.1\|2152949_2153615_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
CP027486.1\|AVO69651.1\|2166597_2167032_+\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP027486.1\|AVO69634.1\|2148399_2148813_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
CP027486.1\|AVO69647.1\|2159380_2160163_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.29094e-106
CP027486.1\|AVO69633.1\|2147756_2148200_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
CP027486.1\|AVO69639.1\|2153766_2154087_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
CP027486.1\|AVO69649.1\|2162880_2164419_+\|PTS-mannitol-transporter-subunit-IICBA	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP027486.1\|AVO69637.1\|2151575_2152514_-\|mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP027486.1\|AVO69640.1\|2154088_2155066_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	5.81737e-107
CP027486.1\|AVO69648.1\|2160394_2162200_-\|glutamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0

>CP027486.1|AVO69641.1|2155331_2156423_+|transcriptional-regulator
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP027486.1|AVO69640.1|2154088_2155066_+|cation-transporter
MSHSHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASTLVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>CP027486.1|AVO69639.1|2153766_2154087_+|ArsR-family-transcriptional-regulator
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP027486.1|AVO69638.1|2152949_2153615_-|SDR-family-NAD(P)-dependent-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>CP027486.1|AVO69637.1|2151575_2152514_-|mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP027486.1|AVO69636.1|2151314_2151545_-|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP027486.1|AVO69635.1|2149269_2150643_-|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVKKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP027486.1|AVO69634.1|2148399_2148813_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP027486.1|AVO69633.1|2147756_2148200_-|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP027486.1|AVO69632.1|2146925_2147636_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>CP027486.1|AVO69642.1|2156855_2156960_-|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>CP027486.1|AVO69643.1|2157392_2157575_-|hypothetical-protein
MIIFRFKVNAFFPVKLCLMIRFCLESCCIFRRHLLITFHNIRSKFIMFKYISSKCIICTG
>CP027486.1|AVO69644.1|2157639_2157798_+|integrase
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>CP027486.1|AVO69645.1|2158234_2158327_+|erm-Leader-peptide
MTYGSIVAILCALFVIFFIPYMEKKDKKKK
>CP027486.1|AVO69646.1|2158455_2159313_-|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>CP027486.1|AVO69647.1|2159380_2160163_-|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATTGGVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHHLLKLVGISAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLNILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP027486.1|AVO69648.1|2160394_2162200_-|glutamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP027486.1|AVO69649.1|2162880_2164419_+|PTS-mannitol-transporter-subunit-IICBA
MSQTEEKKGIGRRVQAFGSFLSSMIMPNVGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP027486.1|AVO69650.1|2164453_2166586_+|PRD-domain-containing-protein
MLLSTREKEMIALLIKYHSQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP027486.1|AVO69651.1|2166597_2167032_+|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP027486_1	1.1\|162569\|33\|CP027486\|CRISPRCasFinder	162569-162601	33	CP027486.1	1344508-1344540	0	1.0
CP027486_4	4.1\|778785\|31\|CP027486\|CRISPRCasFinder	778785-778815	31	CP027486.1	285382-285412	0	1.0
CP027486_5	5.1\|784252\|25\|CP027486\|CRISPRCasFinder	784252-784276	25	CP027486.1	162527-162551	0	1.0
CP027486_5	5.1\|784252\|25\|CP027486\|CRISPRCasFinder	784252-784276	25	CP027486.1	285304-285328	0	1.0
CP027486_5	5.1\|784252\|25\|CP027486\|CRISPRCasFinder	784252-784276	25	CP027486.1	285414-285438	0	1.0
CP027486_5	5.1\|784252\|25\|CP027486\|CRISPRCasFinder	784252-784276	25	CP027486.1	613315-613339	0	1.0
CP027486_5	5.1\|784252\|25\|CP027486\|CRISPRCasFinder	784252-784276	25	CP027486.1	736911-736935	0	1.0
CP027486_5	5.1\|784252\|25\|CP027486\|CRISPRCasFinder	784252-784276	25	CP027486.1	1344408-1344432	0	1.0
CP027486_5	5.1\|784252\|25\|CP027486\|CRISPRCasFinder	784252-784276	25	CP027486.1	1614651-1614675	0	1.0
CP027486_5	5.1\|784252\|25\|CP027486\|CRISPRCasFinder	784252-784276	25	CP027486.1	1629182-1629206	0	1.0
CP027486_5	5.1\|784252\|25\|CP027486\|CRISPRCasFinder	784252-784276	25	CP027486.1	1931112-1931136	0	1.0
CP027486_9	9.1\|2033657\|34\|CP027486\|CRISPRCasFinder	2033657-2033690	34	CP027486.1	778760-778793	0	1.0
CP027486_9	9.1\|2033657\|34\|CP027486\|CRISPRCasFinder	2033657-2033690	34	CP027486.1	1133723-1133756	0	1.0
CP027486_1	1.1\|162569\|33\|CP027486\|CRISPRCasFinder	162569-162601	33	CP027486.1	827349-827381	1	0.97
CP027486_4	4.1\|778785\|31\|CP027486\|CRISPRCasFinder	778785-778815	31	CP027486.1	285327-285357	1	0.968
CP027486_5	5.1\|784252\|25\|CP027486\|CRISPRCasFinder	784252-784276	25	CP027486.1	285359-285383	1	0.96
CP027486_5	5.1\|784252\|25\|CP027486\|CRISPRCasFinder	784252-784276	25	CP027486.1	827398-827422	1	0.96
CP027486_5	5.1\|784252\|25\|CP027486\|CRISPRCasFinder	784252-784276	25	CP027486.1	896394-896418	1	0.96
CP027486_5	5.1\|784252\|25\|CP027486\|CRISPRCasFinder	784252-784276	25	CP027486.1	1649212-1649236	1	0.96
CP027486_7	7.1\|1614601\|33\|CP027486\|CRISPRCasFinder	1614601-1614633	33	CP027486.1	1344508-1344540	1	0.97
CP027486_1	1.1\|162569\|33\|CP027486\|CRISPRCasFinder	162569-162601	33	CP027486.1	1433108-1433140	2	0.939
CP027486_7	7.1\|1614601\|33\|CP027486\|CRISPRCasFinder	1614601-1614633	33	CP027486.1	827349-827381	2	0.939
CP027486_8	8.1\|1649253\|43\|CP027486\|PILER-CR	1649253-1649295	43	CP027486.1	361848-361890	2	0.953
CP027486_8	8.1\|1649253\|43\|CP027486\|PILER-CR	1649253-1649295	43	CP027486.1	1036720-1036762	2	0.953
CP027486_8	8.1\|1649253\|43\|CP027486\|PILER-CR	1649253-1649295	43	CP027486.1	1138098-1138140	2	0.953
CP027486_8	8.1\|1649253\|43\|CP027486\|PILER-CR	1649253-1649295	43	CP027486.1	1344466-1344508	2	0.953
CP027486_8	8.1\|1649253\|43\|CP027486\|PILER-CR	1649253-1649295	43	CP027486.1	1433140-1433182	2	0.953
CP027486_9	9.1\|2033657\|34\|CP027486\|CRISPRCasFinder	2033657-2033690	34	CP027486.1	1734857-1734890	2	0.941
CP027486_9	9.1\|2033657\|34\|CP027486\|CRISPRCasFinder	2033657-2033690	34	CP027486.1	1348881-1348914	2	0.941
CP027486_9	9.1\|2033657\|34\|CP027486\|CRISPRCasFinder	2033657-2033690	34	CP027486.1	2710026-2710059	2	0.941

1. spacer 1.1|162569|33|CP027486|CRISPRCasFinder matches to position: 1344508-1344540, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

2. spacer 4.1|778785|31|CP027486|CRISPRCasFinder matches to position: 285382-285412, mismatch: 0, identity: 1.0

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
*******************************

3. spacer 5.1|784252|25|CP027486|CRISPRCasFinder matches to position: 162527-162551, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

4. spacer 5.1|784252|25|CP027486|CRISPRCasFinder matches to position: 285304-285328, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

5. spacer 5.1|784252|25|CP027486|CRISPRCasFinder matches to position: 285414-285438, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

6. spacer 5.1|784252|25|CP027486|CRISPRCasFinder matches to position: 613315-613339, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

7. spacer 5.1|784252|25|CP027486|CRISPRCasFinder matches to position: 736911-736935, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

8. spacer 5.1|784252|25|CP027486|CRISPRCasFinder matches to position: 1344408-1344432, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

9. spacer 5.1|784252|25|CP027486|CRISPRCasFinder matches to position: 1614651-1614675, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

10. spacer 5.1|784252|25|CP027486|CRISPRCasFinder matches to position: 1629182-1629206, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

11. spacer 5.1|784252|25|CP027486|CRISPRCasFinder matches to position: 1931112-1931136, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

12. spacer 9.1|2033657|34|CP027486|CRISPRCasFinder matches to position: 778760-778793, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

13. spacer 9.1|2033657|34|CP027486|CRISPRCasFinder matches to position: 1133723-1133756, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

14. spacer 1.1|162569|33|CP027486|CRISPRCasFinder matches to position: 827349-827381, mismatch: 1, identity: 0.97

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattctcaat	Protospacer
****************************.****

15. spacer 4.1|778785|31|CP027486|CRISPRCasFinder matches to position: 285327-285357, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
****************************.**

16. spacer 5.1|784252|25|CP027486|CRISPRCasFinder matches to position: 285359-285383, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaatttc	Protospacer
********************* ***

17. spacer 5.1|784252|25|CP027486|CRISPRCasFinder matches to position: 827398-827422, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgcagaatttcttttcgaaattc	Protospacer
****.********************

18. spacer 5.1|784252|25|CP027486|CRISPRCasFinder matches to position: 896394-896418, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttagaaattc	Protospacer
***************** *******

19. spacer 5.1|784252|25|CP027486|CRISPRCasFinder matches to position: 1649212-1649236, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttctttacgaaattc	Protospacer
**************** ********

20. spacer 7.1|1614601|33|CP027486|CRISPRCasFinder matches to position: 1344508-1344540, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

21. spacer 1.1|162569|33|CP027486|CRISPRCasFinder matches to position: 1433108-1433140, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tggaccccaacaaagagaaattgtattcccaat	Protospacer
***.******************* *********

22. spacer 7.1|1614601|33|CP027486|CRISPRCasFinder matches to position: 827349-827381, mismatch: 2, identity: 0.939

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgagaatccaatttctctttgttggggccca	Protospacer
****.*************** ************

23. spacer 8.1|1649253|43|CP027486|PILER-CR matches to position: 361848-361890, mismatch: 2, identity: 0.953

atccccaacttgcacattattgaaagctgacttttggtcagct	CRISPR spacer
atccccaacttgcacattattgtaagctgacttttcgtcagct	Protospacer
********************** ************ *******

24. spacer 8.1|1649253|43|CP027486|PILER-CR matches to position: 1036720-1036762, mismatch: 2, identity: 0.953

atccccaacttgcacattattgaaagctgacttttggtcagct	CRISPR spacer
atccccaacttgcacattattgtaagctgacttttcgtcagct	Protospacer
********************** ************ *******

25. spacer 8.1|1649253|43|CP027486|PILER-CR matches to position: 1138098-1138140, mismatch: 2, identity: 0.953

atccccaacttgcacattattgaaagctgacttttggtcagct	CRISPR spacer
atccccaacttgcacattattgtaagctgacttttcgtcagct	Protospacer
********************** ************ *******

26. spacer 8.1|1649253|43|CP027486|PILER-CR matches to position: 1344466-1344508, mismatch: 2, identity: 0.953

atccccaacttgcacattattgaaagctgacttttggtcagct	CRISPR spacer
atccccaacttgcacattattgtaagctgacttttcgtcagct	Protospacer
********************** ************ *******

27. spacer 8.1|1649253|43|CP027486|PILER-CR matches to position: 1433140-1433182, mismatch: 2, identity: 0.953

atccccaacttgcacattattgaaagctgacttttggtcagct	CRISPR spacer
atccccaacttgcacattattgtaagctgacttttcgtcagct	Protospacer
********************** ************ *******

28. spacer 9.1|2033657|34|CP027486|CRISPRCasFinder matches to position: 1734857-1734890, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgkgttgg	Protospacer
*************************.** *****

29. spacer 9.1|2033657|34|CP027486|CRISPRCasFinder matches to position: 1348881-1348914, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

30. spacer 9.1|2033657|34|CP027486|CRISPRCasFinder matches to position: 2710026-2710059, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027486_11	11.1\|2168787\|34\|CP027486\|CRISPRCasFinder	2168787-2168820	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
CP027486_11	11.1\|2168787\|34\|CP027486\|CRISPRCasFinder	2168787-2168820	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765

1. spacer 11.1|2168787|34|CP027486|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **

2. spacer 11.1|2168787|34|CP027486|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

715989 : 723810

Hokovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVO68250.1\|715989_717045_-	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
AVO68251.1\|717044_717731_-	DNA-binding response regulator	NA	NA	NA	NA
AVO68252.1\|717705_718179_-	DoxX family protein	NA	NA	NA	NA
AVO68253.1\|718521_718962_-	hypothetical protein	NA	NA	NA	NA
AVO68254.1\|719241_719826_-	hypothetical protein	NA	NA	NA	NA
AVO68255.1\|719924_720638_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AVO68256.1\|720641_721061_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
AVO68257.1\|721062_721731_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AVO68258.1\|722081_722675_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
AVO68259.1\|722658_723810_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	6.0e-23	35.7

DBSCAN-SWA_2

735781 : 750366

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVO68269.1\|735781_736840_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7
AVO68270.1\|737178_737721_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AVO68271.1\|737833_737932_+	hypothetical protein	NA	NA	NA	NA
AVO68272.1\|738107_738275_+	nitrogen fixation protein NifR	NA	NA	NA	NA
AVO68273.1\|738543_739461_-	lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
AVO68274.1\|739551_739653_+	hypothetical protein	NA	NA	NA	NA
AVO68275.1\|739730_741236_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AVO68276.1\|741301_741547_-	hypothetical protein	NA	NA	NA	NA
AVO68277.1\|741576_742077_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AVO68278.1\|742096_742963_-	EamA/RhaT family transporter	NA	NA	NA	NA
AVO68279.1\|743347_743614_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA
AVO68280.1\|743763_744162_+	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AVO68281.1\|744124_746230_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AVO68282.1\|746347_747319_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AVO68283.1\|747499_747655_+	hypothetical protein	NA	NA	NA	NA
AVO70239.1\|747693_748665_+	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
AVO68284.1\|748651_749608_+	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AVO68285.1\|749604_750366_+	iron ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.5e-18	31.6

DBSCAN-SWA_3

946380 : 1019315

Staphylococcus_phage(77.61%)

bacteriocin,capsid,protease,integrase,portal,tail,head,holin,terminase

attL 949226:949252|attR 993701:993727

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVO68474.1\|946380_947943_+	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	1.7e-36	28.2
AVO68475.1\|948244_949048_+	hypothetical protein	S5MAL1	Bacillus_phage	1.6e-30	40.5
949226:949252	attL	NA	NA	NA	NA
AVO68476.1\|949336_950542_-\|integrase	site-specific integrase	B7T0F2	Staphylococcus_virus	4.2e-221	100.0
AVO68477.1\|950668_951292_+	hypothetical protein	B7T0F3	Staphylococcus_virus	1.3e-104	99.5
AVO68478.1\|951490_951886_-	hypothetical protein	I1W601	Staphylococcus_phage	3.2e-69	99.2
AVO68479.1\|951914_952349_-	hypothetical protein	A0A2I6PEM0	Staphylococcus_phage	7.5e-19	93.1
AVO68480.1\|952366_952828_-	toxin	A0A2I6PEK4	Staphylococcus_phage	4.9e-85	98.0
AVO68481.1\|952840_953170_-	XRE family transcriptional regulator	A0A2I6PEN2	Staphylococcus_phage	3.2e-54	100.0
AVO68482.1\|953330_953522_+	XRE family transcriptional regulator	A0A2I6PEL6	Staphylococcus_phage	2.3e-28	100.0
AVO68483.1\|953609_953825_+	hypothetical protein	A0A2I6PDN5	Staphylococcus_phage	5.0e-32	98.6
AVO68484.1\|953849_954113_+	helix-turn-helix domain-containing protein	A0A2I6PEL8	Staphylococcus_phage	2.5e-46	100.0
AVO68485.1\|954124_954286_+	DUF1270 domain-containing protein	A0A059T7J6	Staphylococcus_phage	2.1e-19	96.2
AVO68486.1\|954378_954639_+	DUF2482 domain-containing protein	A0A0H3U2W4	Staphylococcus_phage	1.3e-39	98.8
AVO68487.1\|954678_954939_+	hypothetical protein	A0EWW8	Staphylococcus_phage	1.7e-42	96.5
AVO68488.1\|954952_955315_+	hypothetical protein	A0A2I6PEM7	Staphylococcus_phage	3.7e-56	100.0
AVO68489.1\|955311_956478_+	DUF2800 domain-containing protein	A0A2I6PEL9	Staphylococcus_phage	2.2e-219	99.0
AVO68490.1\|956503_957061_+	DUF2815 domain-containing protein	A0A2I6PEP8	Staphylococcus_phage	1.8e-97	100.0
AVO70243.1\|957128_959081_+	DNA polymerase	M9QT72	Staphylococcus_phage	0.0e+00	99.7
AVO68491.1\|959093_959279_+	DUF3113 domain-containing protein	A0A2I6PEM8	Staphylococcus_phage	7.0e-27	100.0
AVO68492.1\|959278_959680_+	PVL family protein	A7TWG8	Staphylococcus_phage	9.5e-69	100.0
AVO68493.1\|959679_959937_+	DUF3310 domain-containing protein	A0A2I6PF10	Staphylococcus_phage	5.7e-43	100.0
AVO68494.1\|959939_960140_+	hypothetical protein	C5I650	Staphylococcus_phage	7.4e-30	98.5
AVO68495.1\|960148_960397_+	hypothetical protein	Q4ZCP1	Staphylococcus_virus	8.0e-42	97.6
AVO68496.1\|960410_960821_+	hypothetical protein	A0A1P8CN10	Staphylococcus_phage	8.0e-47	69.6
AVO68497.1\|960817_961165_+	hypothetical protein	D2JGL4	Staphylococcus_phage	5.9e-59	100.0
AVO68498.1\|961161_961470_+	hypothetical protein	Q4ZBK6	Staphylococcus_phage	1.2e-47	94.1
AVO68499.1\|961462_961711_+	DUF1024 domain-containing protein	C8CH04	Staphylococcus_phage	1.6e-37	98.8
AVO68500.1\|961703_962234_+	dUTP pyrophosphatase	A0A0F6N3L0	Staphylococcus_phage	1.5e-93	99.4
AVO68501.1\|962270_962459_+	DUF1381 domain-containing protein	Q4ZCG4	Staphylococcus_virus	1.6e-26	100.0
AVO68502.1\|962433_962634_+	hypothetical protein	A0A2I6PF22	Staphylococcus_phage	1.8e-28	100.0
AVO68503.1\|962621_962789_+	transcriptional regulator	A0A2I6PF16	Staphylococcus_phage	2.8e-22	98.2
AVO68504.1\|962856_963057_+	DUF1514 domain-containing protein	A0A2I6PEG6	Staphylococcus_phage	2.9e-26	100.0
AVO68505.1\|963108_965556_+	hypothetical protein	Q4ZCG0	Staphylococcus_virus	0.0e+00	99.0
AVO68506.1\|965658_965763_-	hypothetical protein	Q4ZCF8	Staphylococcus_virus	9.4e-13	100.0
AVO70244.1\|965896_966187_+	VRR-NUC domain-containing protein	M1T308	Staphylococcus_phage	4.9e-51	100.0
AVO68507.1\|966167_967535_+	DEAD/DEAH box helicase	Q4ZCM9	Staphylococcus_virus	1.9e-262	99.6
AVO68508.1\|967547_967985_+	transcriptional regulator	A0A2I6PDC2	Staphylococcus_phage	4.6e-77	100.0
AVO68509.1\|968141_968456_+	HNH endonuclease	A0A2I6PDC4	Staphylococcus_phage	2.5e-56	100.0
AVO68510.1\|968584_968890_+\|terminase	phage terminase small subunit P27 family	A0A2I6PE27	Staphylococcus_phage	2.9e-49	100.0
AVO68511.1\|968879_970571_+\|terminase	terminase large subunit	A0A2I6PE44	Staphylococcus_phage	0.0e+00	99.8
AVO68512.1\|970575_971814_+\|portal	phage portal protein	A0A2K9VBP0	Staphylococcus_phage	6.9e-235	100.0
AVO68513.1\|971797_972571_+\|protease	Clp protease ClpP	M1TAZ4	Staphylococcus_phage	9.2e-137	100.0
AVO68514.1\|972582_973746_+\|capsid	phage major capsid protein	A0A2I6PDD7	Staphylococcus_phage	2.7e-217	99.7
AVO68515.1\|973814_974093_+\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	7.8e-46	98.9
AVO68516.1\|974104_974437_+	hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	6.2e-58	100.0
AVO68517.1\|974433_974835_+	hypothetical protein	A0A2I6PDD3	Staphylococcus_phage	6.2e-68	100.0
AVO68518.1\|974835_975231_+	DUF3168 domain-containing protein	A0A2I6PDD8	Staphylococcus_phage	2.6e-66	100.0
AVO68519.1\|975265_975907_+\|tail	phage tail protein	A0A2I6PEP6	Staphylococcus_phage	5.9e-121	100.0
AVO68520.1\|975998_976454_+\|tail	phage tail protein	A0A2I6PER6	Staphylococcus_phage	5.7e-78	100.0
AVO68521.1\|976511_976862_+	hypothetical protein	A0A2I6PDE6	Staphylococcus_phage	1.1e-55	100.0
AVO68522.1\|976903_977062_+	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
AVO68523.1\|977075_983276_+\|tail	phage tail tape measure protein	A0A2I6PDD9	Staphylococcus_phage	0.0e+00	99.5
AVO68524.1\|983275_984100_+\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	4.1e-159	100.0
AVO68525.1\|984108_985692_+	peptidase	Q4ZD01	Staphylococcus_virus	3.6e-305	98.5
AVO68526.1\|985691_985982_+	hypothetical protein	R4WEC3	Staphylococcus_phage	2.1e-49	100.0
AVO68527.1\|985997_987908_+	hypothetical protein	A0A2K9VBU3	Staphylococcus_phage	0.0e+00	99.8
AVO68528.1\|987907_989374_+	hypothetical protein	A0A2I6PE72	Staphylococcus_phage	5.8e-273	99.8
AVO68529.1\|989373_989763_+	hypothetical protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
AVO68530.1\|989755_989920_+	XkdX family protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
AVO68531.1\|989965_990265_+	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AVO68532.1\|990400_990703_+\|holin	phage holin	B7T0L0	Staphylococcus_virus	4.1e-48	100.0
AVO68533.1\|990714_992169_+	CHAP domain-containing protein	A0A0N6WMR3	Staphylococcus_phage	3.0e-290	100.0
AVO68534.1\|992487_993048_-	hypothetical protein	Q4ZBG8	Staphylococcus_virus	2.2e-63	69.6
AVO68535.1\|993741_996066_+	PDZ domain-containing protein	W5SAB9	Pithovirus	2.8e-11	27.4
993701:993727	attR	NA	NA	NA	NA
AVO68536.1\|996082_997441_+	Ktr system potassium uptake protein D	NA	NA	NA	NA
AVO68537.1\|997579_999091_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
AVO68538.1\|999577_1000147_-	competence protein ComK	NA	NA	NA	NA
AVO68539.1\|1000356_1000575_+	IDEAL domain-containing protein	NA	NA	NA	NA
AVO68540.1\|1000655_1001642_-	lipoate--protein ligase	NA	NA	NA	NA
AVO68541.1\|1001840_1002017_+	DUF2187 domain-containing protein	NA	NA	NA	NA
AVO68542.1\|1002031_1002634_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AVO70245.1\|1002933_1003011_+\|holin	putative holin-like toxin	NA	NA	NA	NA
AVO68543.1\|1003549_1003651_+	hypothetical protein	NA	NA	NA	NA
AVO70246.1\|1003660_1003933_+\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
AVO68544.1\|1003976_1005941_+	hypothetical protein	NA	NA	NA	NA
AVO68545.1\|1005943_1006264_+	hypothetical protein	NA	NA	NA	NA
AVO68546.1\|1006260_1006902_+\|bacteriocin	bacteriocin ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-19	33.0
AVO68547.1\|1006989_1007280_-	hypothetical protein	NA	NA	NA	NA
AVO68548.1\|1007420_1007558_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA
AVO68549.1\|1007646_1008003_-	DoxX family protein	NA	NA	NA	NA
AVO68550.1\|1008490_1009450_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AVO68551.1\|1009495_1009627_-	hypothetical protein	NA	NA	NA	NA
AVO68552.1\|1009690_1009981_-	NINE protein	A0A060AN66	Enterococcus_phage	7.5e-07	38.0
AVO68553.1\|1010070_1010622_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AVO68554.1\|1010673_1011612_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
AVO68555.1\|1011762_1011867_+	hypothetical protein	NA	NA	NA	NA
AVO68556.1\|1011943_1013155_+	isochorismate synthase	NA	NA	NA	NA
AVO68557.1\|1013141_1014815_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	NA	NA	NA	NA
AVO68558.1\|1014801_1015605_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
AVO68559.1\|1015597_1016419_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
AVO68560.1\|1016656_1016986_-	staphostatin B	NA	NA	NA	NA
AVO68561.1\|1017023_1018205_-\|protease	cysteine protease staphopain B	NA	NA	NA	NA
AVO68562.1\|1018286_1019315_-\|protease	serine protease	A0A2H4PQP7	Staphylococcus_phage	6.3e-16	32.3

DBSCAN-SWA_4

1038242 : 1046715

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVO68578.1\|1038242_1038725_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
AVO68579.1\|1038711_1039836_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AVO68580.1\|1039839_1040544_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AVO68581.1\|1040543_1040807_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AVO68582.1\|1040808_1041480_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AVO68583.1\|1041472_1043662_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.5e-141	39.8
AVO68584.1\|1043640_1045125_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.7
AVO68585.1\|1045117_1046146_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
AVO68586.1\|1046148_1046715_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_5

1664485 : 1673528

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVO69152.1\|1664485_1665004_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
AVO69153.1\|1665025_1667299_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	8.1e-64	29.3
AVO69154.1\|1667501_1669781_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AVO69155.1\|1670055_1670316_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AVO69156.1\|1670334_1671474_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AVO69157.1\|1671496_1672522_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AVO69158.1\|1672523_1673528_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_6

1787574 : 1859085

Staphylococcus_phage(95.65%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVO69265.1\|1787574_1788219_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
AVO69266.1\|1788233_1789025_-	phosphotransferase	NA	NA	NA	NA
AVO69267.1\|1789574_1790423_-	D-amino-acid transaminase	NA	NA	NA	NA
AVO69268.1\|1790426_1791836_-	dipeptidase PepV	NA	NA	NA	NA
AVO69269.1\|1792393_1792816_-	YtxH domain-containing protein	NA	NA	NA	NA
AVO69270.1\|1792832_1793528_-	rRNA pseudouridine synthase	NA	NA	NA	NA
AVO69271.1\|1793524_1795186_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
AVO69272.1\|1795592_1796861_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	9.1e-57	99.1
AVO69273.1\|1796977_1803538_-	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	1.4e-305	98.2
AVO69274.1\|1803863_1804175_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	4.8e-52	99.0
AVO69275.1\|1804196_1806614_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.5
AVO69276.1\|1806901_1808083_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	2.1e-217	99.5
AVO69277.1\|1808192_1809146_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AVO69278.1\|1809142_1809706_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AVO69279.1\|1809828_1810230_-	MarR family transcriptional regulator	NA	NA	NA	NA
AVO69280.1\|1810801_1811629_-	alpha/beta hydrolase	NA	NA	NA	NA
AVO69281.1\|1811631_1811751_-	hypothetical protein	NA	NA	NA	NA
AVO69282.1\|1811862_1812864_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	2.6e-184	99.4
AVO69283.1\|1812985_1813450_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
AVO69284.1\|1813462_1814644_-	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	5.6e-226	99.5
AVO69285.1\|1814654_1815287_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.5e-111	98.6
AVO70271.1\|1815293_1816325_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.0e-196	98.8
AVO69286.1\|1816817_1818320_-	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
AVO69287.1\|1818842_1819157_+	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
AVO69288.1\|1819156_1820449_+	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
AVO69289.1\|1820535_1821390_-	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AVO69290.1\|1821665_1821890_-	hypothetical protein	NA	NA	NA	NA
AVO69291.1\|1822088_1822559_+	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	8.8e-82	98.1
AVO69292.1\|1822671_1823115_+	competence protein ComK	NA	NA	NA	NA
AVO69293.1\|1823101_1823545_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
AVO69294.1\|1823840_1824476_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AVO69295.1\|1824915_1825629_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AVO69296.1\|1825888_1826191_+	hypothetical protein	NA	NA	NA	NA
AVO69297.1\|1826446_1826812_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AVO69298.1\|1826808_1827162_+	camphor resistance protein CrcB	A0A2H4PQQ7	Staphylococcus_phage	3.8e-21	94.0
AVO69299.1\|1829400_1830234_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.3e-157	98.9
AVO69300.1\|1830445_1831354_-	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	1.7e-137	99.7
AVO69301.1\|1831475_1832672_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	6.3e-217	99.2
AVO69302.1\|1833043_1834636_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AVO70272.1\|1835013_1835760_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	1.4e-142	98.8
AVO69303.1\|1835764_1836238_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	7.2e-84	98.7
AVO69304.1\|1836303_1836561_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AVO69305.1\|1836557_1837559_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.3e-185	97.3
AVO69306.1\|1837563_1839042_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	4.0e-282	97.4
AVO70273.1\|1839200_1839656_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	3.6e-80	99.3
AVO69307.1\|1839958_1840609_+	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	2.9e-51	94.0
AVO69308.1\|1840689_1841685_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	2.6e-67	97.9
AVO69309.1\|1841759_1842386_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.1e-74	79.8
AVO69310.1\|1842426_1842768_+	DUF3969 domain-containing protein	A0A2H4PQN6	Staphylococcus_phage	1.1e-54	94.7
AVO69311.1\|1842868_1843441_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	2.3e-23	93.1
AVO69312.1\|1845013_1845115_+	hypothetical protein	NA	NA	NA	NA
AVO69313.1\|1847367_1848612_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	4.8e-236	99.5
AVO69314.1\|1848775_1848910_-	hypothetical protein	NA	NA	NA	NA
AVO69315.1\|1848972_1849692_-\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.9e-131	99.6
AVO69316.1\|1849793_1849901_+	hypothetical protein	NA	NA	NA	NA
AVO69317.1\|1849849_1850569_-\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
AVO69318.1\|1850689_1851409_-\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.3e-129	98.7
AVO69319.1\|1851466_1852189_-\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	3.5e-130	98.3
AVO69320.1\|1852313_1853021_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	7.9e-127	97.0
AVO69321.1\|1853456_1853675_-	hypothetical protein	NA	NA	NA	NA
AVO69322.1\|1853997_1854579_+	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	1.5e-51	63.7
AVO69323.1\|1855051_1855270_-	hypothetical protein	A0A2H4PQH0	Staphylococcus_phage	2.0e-25	80.6
AVO69324.1\|1855525_1855999_+	hypothetical protein	NA	NA	NA	NA
AVO69325.1\|1856003_1856795_+	DUF1828 domain-containing protein	NA	NA	NA	NA
AVO69326.1\|1857164_1858148_-	bi-component leukocidin LukED subunit D	A0A2H4PQH7	Staphylococcus_phage	1.8e-185	99.4
AVO69327.1\|1858149_1859085_-	beta-channel forming cytolysin	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0

DBSCAN-SWA_7

1865286 : 1869533

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVO69334.1\|1865286_1866042_-	exotoxin	A0A075M4C7	Staphylococcus_phage	4.6e-40	41.4
AVO69335.1\|1866080_1866476_-	enterotoxin	A0A097PAT7	Streptococcus_pyogenes_phage	1.5e-26	50.4
AVO69336.1\|1866450_1866852_-	enterotoxin	A0A097PAT7	Streptococcus_pyogenes_phage	1.5e-10	37.9
AVO69337.1\|1867005_1867734_-	exotoxin	A0A1X9H080	Staphylococcus_phage	1.1e-27	39.2
AVO69338.1\|1867768_1868488_-	exotoxin	A0A1X9H080	Staphylococcus_phage	2.3e-25	35.8
AVO69339.1\|1868768_1869533_-	exotoxin	A0A1X9H080	Staphylococcus_phage	2.3e-31	37.1

DBSCAN-SWA_8

1955144 : 2038597

106

Staphylococcus_phage(90.54%)

capsid,protease,integrase,portal,tail,head,holin,terminase

attL 2004919:2004936|attR 2029737:2029754

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVO69419.1\|1955144_1956311_+\|protease	cysteine protease staphopain A	NA	NA	NA	NA
AVO69420.1\|1956341_1956668_+	staphostatin A	NA	NA	NA	NA
AVO69421.1\|1956959_1957133_-	NETI motif-containing protein	NA	NA	NA	NA
AVO69422.1\|1957113_1957716_-	DUF2179 domain-containing protein	NA	NA	NA	NA
AVO69423.1\|1957986_1958808_-	NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7
AVO69424.1\|1958800_1960270_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	5.9e-108	45.1
AVO69425.1\|1960453_1961530_+	nitric oxide synthase oxygenase	NA	NA	NA	NA
AVO69426.1\|1961549_1962344_+	ACT domain-containing protein	NA	NA	NA	NA
AVO69427.1\|1962415_1962523_+	hypothetical protein	NA	NA	NA	NA
AVO69428.1\|1962533_1964096_-	sodium-dependent dicarboxylate transporter SdcS	NA	NA	NA	NA
AVO69429.1\|1964300_1965398_-	pectate lyase	U5PWM6	Bacillus_phage	3.3e-47	34.6
AVO69430.1\|1965766_1966327_+	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
AVO69431.1\|1966379_1967309_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
AVO69432.1\|1967501_1967675_-	hypothetical protein	NA	NA	NA	NA
AVO69433.1\|1967726_1969106_+	aldehyde dehydrogenase	NA	NA	NA	NA
AVO69434.1\|1969225_1970254_-	hypothetical protein	NA	NA	NA	NA
AVO69435.1\|1970523_1970925_+	YolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
AVO69436.1\|1971497_1971671_-	hypothetical protein	NA	NA	NA	NA
AVO69437.1\|1972121_1973162_+	linear amide C-N hydrolase	NA	NA	NA	NA
AVO69438.1\|1973218_1974061_-	hypothetical protein	NA	NA	NA	NA
AVO69439.1\|1974057_1974615_-	DUF1700 domain-containing protein	NA	NA	NA	NA
AVO69440.1\|1974674_1975199_-	hypothetical protein	NA	NA	NA	NA
AVO69441.1\|1975319_1975883_+	thioredoxin family protein	NA	NA	NA	NA
AVO69442.1\|1975948_1976689_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
AVO69443.1\|1976688_1977561_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	1.0e-27	36.0
AVO69444.1\|1977557_1978238_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
AVO69445.1\|1978238_1979135_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	5.0e-17	30.2
AVO69446.1\|1979131_1979512_-	GntR family transcriptional regulator	NA	NA	NA	NA
AVO69447.1\|1979769_1979946_-	hypothetical protein	NA	NA	NA	NA
AVO69448.1\|1980188_1980287_-	hypothetical protein	NA	NA	NA	NA
AVO69449.1\|1980485_1981772_+	aspartate aminotransferase	NA	NA	NA	NA
AVO69450.1\|1982050_1982341_-	adherence protein Eap/Map	NA	NA	NA	NA
AVO69451.1\|1982355_1983786_-	protein map	NA	NA	NA	NA
AVO69452.1\|1984171_1984372_+	hypothetical protein	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0
AVO69453.1\|1984743_1984923_+	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
AVO69454.1\|1984946_1985234_+	hypothetical protein	M9NTD8	Staphylococcus_phage	1.1e-18	75.5
AVO69455.1\|1985237_1985498_+	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
AVO69456.1\|1985550_1985901_-	inhibitor	A7TWS0	Staphylococcus_phage	7.5e-54	100.0
AVO69457.1\|1986583_1987033_+	chemotaxis inhibitory protein	A0A075LZI2	Staphylococcus_phage	8.7e-79	100.0
AVO69458.1\|1988108_1988600_-	staphylokinase	A0A075LYD3	Staphylococcus_phage	8.0e-86	100.0
AVO69459.1\|1988790_1989546_-	CHAP domain-containing protein	A0A075LZV3	Staphylococcus_phage	1.2e-152	100.0
AVO69460.1\|1989557_1989812_-\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AVO69461.1\|1989863_1989971_+	hypothetical protein	NA	NA	NA	NA
AVO70278.1\|1990023_1990200_-\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
AVO69462.1\|1990402_1991185_-	exotoxin	A0A075M4C7	Staphylococcus_phage	1.6e-149	99.6
AVO69463.1\|1991596_1991971_-	hypothetical protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
AVO69464.1\|1992026_1992314_-	hypothetical protein	A0A1X9H0N7	Staphylococcus_phage	7.6e-44	100.0
AVO69465.1\|1992359_1992512_-	hypothetical protein	A0A1W6JPL6	Staphylococcus_phage	7.6e-19	100.0
AVO69466.1\|1992504_1996287_-	hypothetical protein	A0A068A201	Staphylococcus_phage	0.0e+00	99.6
AVO69467.1\|1996302_1997787_-\|tail	phage tail protein	A0A2I6PDJ0	Staphylococcus_phage	4.5e-297	99.8
AVO69468.1\|2002557_2002908_-	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
AVO69469.1\|2002957_2003182_-	hypothetical protein	A0A075LYE8	Staphylococcus_phage	3.0e-32	100.0
AVO69470.1\|2003223_2003868_-\|tail	phage tail protein	G4KNQ7	Staphylococcus_phage	6.5e-120	100.0
AVO69471.1\|2003868_2004276_-	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.9e-71	99.3
AVO69472.1\|2004272_2004677_-	hypothetical protein	G4KNQ5	Staphylococcus_phage	4.3e-69	100.0
AVO69473.1\|2004673_2005036_-\|head,tail	phage head-tail adapter protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
2004919:2004936	attL	NA	NA	NA	NA
AVO69474.1\|2005019_2005304_-\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
AVO69475.1\|2005293_2005578_-	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
AVO69476.1\|2005597_2006743_-\|capsid	phage major capsid protein	G4KNQ3	Staphylococcus_phage	9.6e-215	100.0
AVO69477.1\|2006766_2007504_-\|protease	Clp protease ClpP	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
AVO69478.1\|2007487_2008675_-\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	5.1e-219	99.7
AVO69479.1\|2008690_2010352_-\|terminase	terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
AVO69480.1\|2010348_2010693_-	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AVO69481.1\|2010822_2011122_-	HNH endonuclease	A0A2I6PDH9	Staphylococcus_phage	3.5e-52	100.0
AVO69482.1\|2011353_2011770_-	transcriptional regulator	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
AVO69483.1\|2011797_2011998_-	DUF1514 domain-containing protein	D2JLD9	Staphylococcus_phage	5.3e-28	98.5
AVO69484.1\|2011997_2012147_-	transcriptional regulator	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
AVO69485.1\|2012143_2012350_-	DUF1381 domain-containing protein	A0A2I6PEA2	Staphylococcus_phage	1.1e-17	94.1
AVO69486.1\|2012346_2012592_-	hypothetical protein	A0A2I6PDW7	Staphylococcus_phage	2.5e-35	98.8
AVO69487.1\|2012628_2013165_-	dUTPase	Q9MBR0	Staphylococcus_prophage	1.6e-95	100.0
AVO69488.1\|2013161_2013407_-	hypothetical protein	Q8SDV5	Staphylococcus_phage	1.7e-36	95.1
AVO69489.1\|2013421_2013670_-	hypothetical protein	A0A0K1LL46	Staphylococcus_phage	7.5e-40	96.3
AVO69490.1\|2013666_2013924_-	DUF3310 domain-containing protein	A0A1X9H067	Staphylococcus_phage	6.3e-42	98.8
AVO69491.1\|2013923_2014295_-	hypothetical protein	A0A2I6PDG3	Staphylococcus_phage	3.1e-50	90.2
AVO69492.1\|2014307_2014712_-	RusA family crossover junction endodeoxyribonuclease	A0A075M042	Staphylococcus_phage	8.4e-73	100.0
AVO69493.1\|2014720_2014939_-	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
AVO69494.1\|2014945_2015839_-	DnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	3.2e-141	100.0
AVO69495.1\|2015868_2016339_-	single-stranded DNA-binding protein	A0A1P8L6D9	Staphylococcus_phage	5.7e-81	100.0
AVO69496.1\|2016339_2016957_-	MBL fold metallo-hydrolase	A0A1P8L6F7	Staphylococcus_phage	1.2e-86	100.0
AVO69497.1\|2017037_2017958_-	recombinase	A0A1P8L6F6	Staphylococcus_phage	5.1e-166	100.0
AVO69498.1\|2017959_2019903_-	ATPase	A0A1P8L6F1	Staphylococcus_phage	0.0e+00	100.0
AVO69499.1\|2019911_2020175_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
AVO69500.1\|2020183_2020444_-	DUF1108 domain-containing protein	A0A1P8L6F5	Staphylococcus_phage	5.2e-44	100.0
AVO69501.1\|2020448_2020751_-	DUF2482 domain-containing protein	A0A1P8L6F8	Staphylococcus_phage	7.0e-48	100.0
AVO69502.1\|2020845_2021007_-	DUF1270 domain-containing protein	A0A1P8L6G0	Staphylococcus_phage	1.9e-20	100.0
AVO69503.1\|2021003_2021327_-	DUF771 domain-containing protein	A0A075LYF5	Staphylococcus_phage	3.0e-57	100.0
AVO69504.1\|2021381_2021762_+	DUF2513 domain-containing protein	Q9T1Z5	Staphylococcus_phage	1.2e-68	100.0
AVO69505.1\|2021748_2021946_-	hypothetical protein	O80075	Staphylococcus_phage	2.5e-30	100.0
AVO69506.1\|2021961_2022714_-	oxidoreductase	M9NTH5	Staphylococcus_phage	1.1e-139	100.0
AVO69507.1\|2022764_2023094_+	hypothetical protein	M9NS98	Staphylococcus_phage	5.1e-52	98.2
AVO69508.1\|2023082_2023298_-	DUF2829 domain-containing protein	A0A0H3U4C7	Staphylococcus_phage	4.8e-35	100.0
AVO69509.1\|2023313_2023577_-	XRE family transcriptional regulator	A0A2I6PF09	Staphylococcus_phage	7.2e-41	100.0
AVO69510.1\|2023710_2024424_+	XRE family transcriptional regulator	M9NUL0	Staphylococcus_phage	1.2e-130	100.0
AVO69511.1\|2024439_2025372_+	ATP-dependent helicase	A0A2I6PEZ7	Staphylococcus_phage	5.7e-173	100.0
AVO69512.1\|2025377_2025719_+	hypothetical protein	A0A2I6PF04	Staphylococcus_phage	4.6e-56	100.0
AVO69513.1\|2025922_2026105_+	hypothetical protein	A0A2I6PDF8	Staphylococcus_phage	6.9e-27	100.0
AVO69514.1\|2026204_2027188_+	glycosyl transferase family A	NA	NA	NA	NA
AVO69515.1\|2027198_2027441_+	hypothetical protein	NA	NA	NA	NA
AVO69516.1\|2027503_2028541_+\|integrase	site-specific integrase	Q38086	Staphylococcus_phage	1.4e-175	98.6
AVO69517.1\|2029659_2030676_-	bi-component leukocidin LukGH subunit G	A0A1X9IGW5	Staphylococcus_phage	6.7e-26	30.2
2029737:2029754	attR	NA	NA	NA	NA
AVO69518.1\|2030697_2031753_-	bi-component leukocidin LukGH subunit H	A0A1X9IGW5	Staphylococcus_phage	2.8e-35	34.3
AVO69519.1\|2032188_2033412_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
AVO69520.1\|2033855_2035163_+	TrkH family potassium uptake protein	NA	NA	NA	NA
AVO69521.1\|2035702_2037319_-	molecular chaperone GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
AVO69522.1\|2037394_2037679_-	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
AVO69523.1\|2037853_2038597_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027486

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection