CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027418	Providencia rettgeri strain FDAARGOS_330 chromosome, complete genome	3 crisprs	cas3,csa3,WYL,DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	1	15	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027418_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027418_1

668534-668633

Orphan

Consensus_repeat	Method
AGGAGCATACAAAAGTATGTGACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027418_1

>merge|CP027418|1|668534-668633|CRISPRCasFinder
AGGAGCATACAAAAGTATGTGACTAGGGTTGACGAGTGACGCCAACACAGGCACAACTTGAAGTATGACGAAAAAAAGGAGCATACAAAAGTATGTGACT

>CP027418|1|1|668534-668633|CRISPRCasFinder
AGGAGCATACAAAAGTATGTGACT	AGGGTTGACGAGTGACGCCAACACAGGCACAACTTGAAGTATGACGAAAAAA
AGGAGCATACAAAAGTATGTGACT

Protein	Signature genes	Signature genes Name	Protein_function
CP027418.1\|AVL72751.1\|678615_680022_+\|glutamate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183733
CP027418.1\|AVL72750.1\|675969_678315_-\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	unknown	unknown	gnl\|CDD\|236842
CP027418.1\|AVL72733.1\|658988_660926_+\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226234
CP027418.1\|AVL72742.1\|667258_668341_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|223425
CP027418.1\|AVL72749.1\|675086_675737_-\|isoprenoid-biosynthesis-protein-ElbB	unknown	unknown	gnl\|CDD\|236980
CP027418.1\|AVL72741.1\|666369_667110_+\|oxo-acid-lyase	unknown	unknown	gnl\|CDD\|188342
CP027418.1\|AVL72739.1\|664132_665272_+\|amidohydrolase/deacetylase-family-metallohydrolase	unknown	unknown	gnl\|CDD\|236423
CP027418.1\|AVL72748.1\|674355_675078_-\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	unknown	unknown	gnl\|CDD\|234603
CP027418.1\|AVL72740.1\|665255_666368_+\|SelA-like-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|273623
CP027418.1\|AVL72735.1\|661781_662147_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132616
CP027418.1\|AVL72737.1\|662469_663261_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274659
CP027418.1\|AVL72736.1\|662146_662443_+\|cytoplasmic-protein	unknown	unknown	gnl\|CDD\|213831
CP027418.1\|AVL72747.1\|673716_674292_+\|osmotically-inducible-protein-OsmY	unknown	unknown	gnl\|CDD\|182907
CP027418.1\|AVL72752.1\|680120_680615_-\|ClpXP-protease-specificity-enhancing-factor	unknown	unknown	gnl\|CDD\|236987
CP027418.1\|AVL72743.1\|669281_670154_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|184956
CP027418.1\|AVL72745.1\|671968_672343_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119
CP027418.1\|AVL72744.1\|670215_671922_+\|penicillin-binding-protein-activator	unknown	unknown	gnl\|CDD\|225649
CP027418.1\|AVL72734.1\|661410_661749_+\|transcriptional-antiterminator	unknown	unknown	gnl\|CDD\|132621
CP027418.1\|AVL72738.1\|663263_663914_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132618
CP027418.1\|AVL72746.1\|673116_673707_+\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811

Protein	Function_ID	Function_description	E-value
CP027418.1\|AVL72751.1\|678615_680022_+\|glutamate-synthase-small-subunit	gnl\|CDD\|183733	PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed.	0
CP027418.1\|AVL72750.1\|675969_678315_-\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
CP027418.1\|AVL72733.1\|658988_660926_+\|PRD-domain-containing-protein	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	1.48858e-52
CP027418.1\|AVL72742.1\|667258_668341_-\|4Fe-4S-binding-protein	gnl\|CDD\|223425	COG0348, NapH, Polyferredoxin [Energy production and conversion].	1.6413e-39
CP027418.1\|AVL72749.1\|675086_675737_-\|isoprenoid-biosynthesis-protein-ElbB	gnl\|CDD\|236980	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB.	1.5401e-141
CP027418.1\|AVL72741.1\|666369_667110_+\|oxo-acid-lyase	gnl\|CDD\|188342	TIGR03581, EF_0839, conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	3.4498e-138
CP027418.1\|AVL72739.1\|664132_665272_+\|amidohydrolase/deacetylase-family-metallohydrolase	gnl\|CDD\|236423	PRK09237, PRK09237, amidohydrolase/deacetylase family metallohydrolase.	0
CP027418.1\|AVL72748.1\|674355_675078_-\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	gnl\|CDD\|234603	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional.	5.15934e-124
CP027418.1\|AVL72740.1\|665255_666368_+\|SelA-like-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|273623	TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. [Unknown function, Enzymes of unknown specificity].	0
CP027418.1\|AVL72735.1\|661781_662147_+\|hypothetical-protein	gnl\|CDD\|132616	TIGR03577, EF_0830, conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	5.03903e-60
CP027418.1\|AVL72737.1\|662469_663261_+\|hypothetical-protein	gnl\|CDD\|274659	TIGR03580, EF_0832, conserved hypothetical protein EF_0832/AHA_3913. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Unknown function, General].	8.44086e-149
CP027418.1\|AVL72736.1\|662146_662443_+\|cytoplasmic-protein	gnl\|CDD\|213831	TIGR03578, EF_0831, conserved hypothetical protein EF_0831/AHA_3912. Members of this family of small (about 100 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	2.4064e-33
CP027418.1\|AVL72747.1\|673716_674292_+\|osmotically-inducible-protein-OsmY	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.36931e-104
CP027418.1\|AVL72752.1\|680120_680615_-\|ClpXP-protease-specificity-enhancing-factor	gnl\|CDD\|236987	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional.	2.72272e-79
CP027418.1\|AVL72743.1\|669281_670154_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
CP027418.1\|AVL72745.1\|671968_672343_+\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	1.53859e-45
CP027418.1\|AVL72744.1\|670215_671922_+\|penicillin-binding-protein-activator	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	3.79038e-130
CP027418.1\|AVL72734.1\|661410_661749_+\|transcriptional-antiterminator	gnl\|CDD\|132621	TIGR03582, EF_0829, PRD domain protein EF_0829/AHA_3910. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. This protein contains a PRD domain (see pfam00874). The function is unknown. [Unknown function, General].	1.68887e-30
CP027418.1\|AVL72738.1\|663263_663914_+\|hypothetical-protein	gnl\|CDD\|132618	TIGR03579, EF_0833, conserved hypothetical protein EF_0833/AHA_3914. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.	4.7593e-95
CP027418.1\|AVL72746.1\|673116_673707_+\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	3.39842e-134

>CP027418.1|AVL72742.1|667258_668341_-|4Fe-4S-binding-protein
MLKRWAYMTKKPRIRYQRRPGTTGGKLPWNDWRNASTWRKVVQFTLLAINLYIGITFYYWVRYYETGGATLYLPRPGGIEGWLPIAGLMNLKYTLETGSFPVIHAASMFLLVSFIIISLLLKKAFCSWMCPIGTISEYTGKIGQKLFRYQNQIDLPKWLDIPLKGLKYLLLAFFLYIALSMPAQMIQYFMMSPYGIIIDVKMLDFFRYISGVTLVSVIVLVVISLFIRNAWCRYLCPYGALLGLFSLFSPVKIRRDVESCIDCGKCAKNCPSRIPVDKLIKVRTVECTGCMTCVESCPVSSTLNFSLQVPRKKRQVPLSGVIMLVLTLGMLFSAIGVAAYFGVWDSPVPDNYWFHIIPNA
>CP027418.1|AVL72741.1|666369_667110_+|oxo-acid-lyase
MKLSPNFYRDRVCLNVLAGSHQNAKDIYVAAETFVVVGVLSKNYPDLESAIADMRIYAQETDNALSVGLGAGDPNQSTMVSLISQEIQPQHVNQVFTGAPISRALLGQTETFVNALISPTGTVGMVKISTGPLSSQAPDGIVPIETAIMMLKDMGADSVKFFNMKGLKYIEEYKAIAKACAEFDFSLEPTGGIDLDNFAEILQIALDAGVKKIIPHIYSSIIDKNTGNTRPEEVRQLLQMVKQAVN
>CP027418.1|AVL72740.1|665255_666368_+|SelA-like-pyridoxal-phosphate-dependent-enzyme
MQSIYDKYQLKHVINASGRMTALGVSTPTPEVVERVAYGLNHYFEIKDLVNKTGEYIASLLDVEAAVVVSCASAGIAQAVAAVIVQDDDDLLLNLHSSDKVVPREIILPKGHNVNFGAPVDTMVTLGGGKVIEAGFANECSAAQLAAKITPQTAAILYIKSHHTVQKSMLTVEQAAKVAHDHQLPLIVDAAAEEELTAYYHTGGDIVIYSGAKAIEGPTSGLVIGKKQYIEWVKRQSQGIGRAMKVGKEGILGLTLAIEQYLSATKETGAEMVNRMSKFISDLNDINGISAQVVWDGAGRDIARTEISFDENVIGKTTYQIMAELKQGNTAIYFREYKANEGKVEADIRSVSNEQLDVISKNIRLLVEGF
>CP027418.1|AVL72739.1|664132_665272_+|amidohydrolase/deacetylase-family-metallohydrolase
MYTLIIKQAKRIDGAIIDILIKDGKIDAAGPELANNQQADKVIDLKGKCYVSAGWIDSHAHCFVESPIYFDDPDLAGAAGGVTSLVDAGSVGADDVDKFYQLTQKSKTNVFSLLNISRIGIIAQNELSDMNNINETCFQEAIERHNGFIVGMKARMSKSVVGENGITPLIKAKEMQKKHHLPLMVHIGNNPPNIDEVADLLTRGDIITHCFNGKPNKILGDDGYLKPSIARALARGVILDVGHGGESFSFKVAEQAMRIGTYPDIISSDIYHRNRVNGPVYSLAFVMTKFLCMGFSAEQVLRCVTEKAADLLSLPAKGYLKPGFDADITLFDLKEEPTELTDAEGEHRIGTHRFVPIAAIVGGKHIIHAEGESEHAINL
>CP027418.1|AVL72738.1|663263_663914_+|hypothetical-protein
MTTEINKQDFWYAEWSFPIFVGLLSAGIFAGTHMYVVYGFGAFNEVAFVAMLRAGLDTGVYGAVAAFGASFLFARIIEGSLVGILDIGGALQTGIGLGVPALFLAAGWDILVTNFWMSLLTGLLLGVLIGLLIVFARKFTIAQANSTFGADVMMGAGNTSGRFLGPLIILAAMAASIPIGIGSLIGALVFYVWQKPVAGGAILGAMLFGYFFPIAA
>CP027418.1|AVL72737.1|662469_663261_+|hypothetical-protein
MSETASFLEILGMSLIIGGLCGFGLGAGAARMFHAPTVQGMGAFRTLGELNACEGDPASHFSFGLGFFFNAWASSVAAGAFTQDVDHRIIPNWGAAALLTKNRSVADTLHNPKKMAIACAIIGAVVVAFLNTTASAVPAALQTTAVNVLVPAANLLVNTVMPVIFWLAAMDAGRRSGFWATLFGGCAQLIMGNAIPGLVLGILIGKGVDDNGWNRITRTMMITVVLLFVLSGFFREFDLKMITSFNLDKPLWLEYVHGLLSGK
>CP027418.1|AVL72736.1|662146_662443_+|cytoplasmic-protein
MKKSIETVVRVTGQGDTKQKAIADALNSIQKTVLKNNTDIILRIEPKDVEVVSAHSQSRTEKFLFIFLPRKREHFRVVLDVSLDVTLLSVNEIPFTEQ
>CP027418.1|AVL72735.1|661781_662147_+|hypothetical-protein
MKQMVVVIGDRLGKGQKVAAGVEAAGGKAIVVPGVAADMKLGDVMNAEQADLGISFCGSGGAGAITAQTKYGYKARYGMRSIEEGETAIADGCNVLGFGFMDKEELGERLVKAFNKKYGNA
>CP027418.1|AVL72734.1|661410_661749_+|transcriptional-antiterminator
MSESVVVFKMLEHNLDIDEVTQKLLAVITDWLKQEDCYTTDVQQQMLQSHLRAMVARAKTGEALPEIDISLFDEISAHSIALAQRVVDTLPGLAQEETYLLSVHFEVARAND
>CP027418.1|AVL72733.1|658988_660926_+|PRD-domain-containing-protein
MALFTQQRHNQIFAQILNEVVPQDELAKLCSVSTRTIRSDINEINELIQEYSAHIVYERGHGYRLKIEDEALFATFTKQTEEENSIPRTSKERIDALLLKLLMQSLPVKLDDIAEEWFISRGTLQQDMGAVREQLHKYQISLESIPHQGIRLNGSEWAVRACMTETLWRRYSAQLTPDLTSFRPDCLDNLDLTYIDKVLHNSMNRFDIRISNEGHLYLVFNCAVTILRITRGHELTTTVKNDDSEEVIRKACDEISKGLIYFLGNDLSGAELSYLHDQIIAQRISNQDPSSQKVGSHNELSEYILSYINELYNYDLRNDEKLKKDLNTHLAALITRLQYHISTPNPLLSDIKQYYPFAYDVTLSALTSASKQLLPHPINEDELGYLAVHIGVSLERNYGAGSIRQTEVLVVTDAGNSTFRVVESKIMREFPQLKFSRGLTLQEYESLNEVTEDFVITTVRVSEKNKPVIKIAPFPTPYQLEQVGRLAMVDQTRPYIIERFFDERFFMVVNEKISQAELFQTVCHKLQREGYVTSDFYPSLQERESIVSTLLGEGIALPHSLGLLANKTVVATVVAPQGIEWNKETKENAYVIFLLAISKADYEEAMAIYDLFVTFVKEKTTRRLIGVKNFNEFQVIAKDSLARIL
>CP027418.1|AVL72743.1|669281_670154_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MNQPNQAVVMASTLYIVPTPIGNMGDITQRALDVLKHVDLIAAEDTRHSGILLQNFAINARLFALHDHNEQQKADQLISKLQQGDSIALVSDAGTPLINDPGYHLVNRCREAGIRVVPLPGACAAITALSAAGLPSDRFCYEGFLPAKTKGRKDVLQSLEQETRTLIFYESTHRLLDSLADMVEVWGPERHVVLARELTKTWESIEGRPVGELLAWVKEDENRHRGEMVLIVEGYKKPEDDSAISPDVVRTLNLLQKELPPKKAAAITAEIYGLKKNMLYKLMLDNQSNE
>CP027418.1|AVL72744.1|670215_671922_+|penicillin-binding-protein-activator
MRPSIFLHLKKGLICTAMLSIFALSGCQMVSDYFPPTQKTPEQSTSDVSSYQAIIDAAQGKPSMEALRAYISQEPLLKTAAERQANIDGLWKMLTQLTPEQVHGIEADEYILQGWVDLLDIYQNNQDDPDALRTGFNDWKMRYSNNPGATIPPTQLLQAMLPRVGTTPKIALFLPMSGQGQVFGQAIMQGFMDAQKGLPQTTSLPANTANAQSSGNDILDQIYAEVAATTGEAPATTDNDLVTSALRIDATPTNTQTIKVFDTTNQQMPQLLEQAKNEGFNLVVGPLLKTDVNVIAQMGAPVSVLALNELDSNQLQPRPNLCYFSLSPEDEAQNAAAYMRSEGKQMPLVLVPANAFGDRIAKAFAKGWQEKGGSTVLMQTFGSVPSLKESINRGAGIRMTGTPVNTGETVSPQLSPQIEDSTGAIDGVYIVATRDELTLIKPMIEMAISTRSRPALYTSSRSNQAGSGADYRFEMDGVKFSEVPLLAGANNSLRKQAQQKLNNDYSLFRLYAMGIDAWSLANNFDKLQQPEQLRINGASGVLTTTPNCVVFRELPWLQFKQGKILPAQ
>CP027418.1|AVL72745.1|671968_672343_+|YraN-family-protein
MKTIQKPLKWLTGRYYEHQVLTFLKQQGLTFVERNARNRAGEIDLIMRDNTGWVFIEVRFRKNGDYGNALLSVNWHKRRKLLAAAKLWLAQRQESFDTSSCRFDICAITGNQFEWIQNAFNEDG
>CP027418.1|AVL72746.1|673116_673707_+|DnaA-initiator-associating-protein-DiaA
MLDRIKVCFTESIQTQIAAAEALPDAISRAAMMMVQSLLNGNKILCCGNGASAATAQRFAASMIHRFETERPSLPALALNTDNAVLTAISGSKQPSEIYAKQVRALGQHGDVLMAISTHGNSSDIIKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSQRSVRIQEVHLLTVNCLCDLIDNTLFPHQDD
>CP027418.1|AVL72747.1|673716_674292_+|osmotically-inducible-protein-OsmY
MRLIPVFAIIMSTILLQGCIGAAVVGSAAVATKSATDPRTVGQQVDDGTLEARVSGQLNKDKEITGKARIIATAYKGNVLLTGQSPDMAWAERAKQIASNVEGTTAVYNEVRSGEPVDLGTASKDTWLTTKVKSKILASDSVKSGSVKVITENGEVFLLGVLTRQEGDAAAKIASETDGVRRVTTAFTYLN
>CP027418.1|AVL72748.1|674355_675078_-|monofunctional-biosynthetic-peptidoglycan-transglycosylase
MLTFVSRLWHWLKKITISLLVVWLFSVILFKYVPVPFSAVMAERQITAWLNLNFSYVSHSKWVDENRISPYVYLAVIAAEDQNFPHHWGFDLDAIERAYQHNMINKQSVRGASTISQQTVKNVWLWDGRSWIRKGFETAMTPVMELFWSKKRILTVYLNVAEFGEGVFGVEEAANKFFNKPASKLTMNEAALLAAVLPNPHRYSVKSPSSYVLKRQAWILNQMRLLGGKNFLKINQLASE
>CP027418.1|AVL72749.1|675086_675737_-|isoprenoid-biosynthesis-protein-ElbB
MKSIAVILSGCGVFDGSEIHESVLTMLALSQNNAEVHFFAPDDNQPTVINHITGEEKSEKRNQLEESSRITRGKISPLSSADASKLDALIIPGGFGAAKNLCNFAVKGSECEINKELLSLVREMHQQKKPLGLMCIAPVMLPKMLNTSVELTIGDDSETIAQIESMGGKHVKCTVDDIVVDEVNRVVTTPAYMLAQSISEANIGINKLVKKVLEMA
>CP027418.1|AVL72750.1|675969_678315_-|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB
MKVLRGLAQYYVDLMMKLGLVRFSLLLASALVVLAMIMQMAVTIFLRGHVDSLDMVGSIFFGLIITPLAVYFLSVVVEQLEESRQRLSRMVDKLEVMRKRDAELNIQLHGNIEQLNLEIQEREKAERAHLELLEQLKQEMKYREQTQVELEQQSVLLRSFLDASPDLVYYRNENNEFSGCNRAMELLTGKSEKHLVGLTPLDIYDVEIASKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQEALENASREKTTFISTISHELRTPLNGIVGLSRILLDTNLTSEQSSYLKTIHVSAVTLGNIFNDVIEMDKIERRKVQLDNQPVALPEFVNDLENLSGLLVQPKGLKFVMDVAPTLPKTVLTDGTRLRQVLWNLIGNAVKFTQQGEVKVSIWQEPENKIFFRVKDSGIGIPQDELDKIFAMYYQVTDSAGGKPATGTGIGLSVSRRLAQNMGGDIQVESEIGQGSTFTLSITAPVVEEEVAEHQDSDDDYPLPALHILLVEDIELNVVVACSVLENLGNTVDVAMNGKDALAMFAPGEYDLVLLDIQLPDMTGLDISRQLKQQYDKEDLPPLIALTANVLKDKKEYFDAGMDGVLSKPLSVPALTQVIEQFWGEHTSQNEEVENRDVTSQVDESILDCDMLEQYIELVGPKLIYDGLDVFEKMLPGYLAILDSNMVAKDQKGIVEEAHKIKGAAGSVGLKNLQKIAQQIQSPDLPAWWDNVQEWVDELKQDWKADIETLRNWVDERTKK
>CP027418.1|AVL72751.1|678615_680022_+|glutamate-synthase-small-subunit
MNSNSFNLQRREPHKKALATRKIEFVEIYEPDNVSDIQQQSSRCLSCGSPFCEWKCPLHNPISSWLKLAAEGRIIEAAELSHHTNSLPEICGRVCPQDKLCEVACVLHDDHGAVTIGHIERYINDTAFALGWRPDLSHVSPVNKRVAIIGAGPAGLACADVLVRNGVEAIVFDKHPEIGGLLTFGIPAFKLEKHVMMQRHEILAEMGVQFQLNTEIGVDLSLDALLSTYDAIFIATGAYQSIKGNLSTESIQGVYEALPYLIANTRHLMALPASTDQPYIDLHKKRVVVLGGGDTAMDCTRSAIRQGAAQVNCVYRRDKASMPGSQKEITNALDEGVQFYFNTQATKVATNENGQITGIYASRTQKGELKDGRYQVELIENSNTFIEADVVIVAFGFHPYTQSWLAEQDVEHNQHGHILASHHTGFPYQTSNQKIFAGGDAIRGSDLVVTAIADGRGAAEGILLFLGV
>CP027418.1|AVL72752.1|680120_680615_-|ClpXP-protease-specificity-enhancing-factor
MMEMTPMSPRRPYLLRAHYEWLLDNDMTPHLVVDVTVPDVNVPMEFARDGQIVLNVAPRAVGNFEITNEEVRFNARFGGVPRQVYVPMSAIMAVYARENGAGMMFEPETAYDAELSSGVEDIEEPEDNITLVHEADLPDESSQEPSGDEPPRPPKGRPALRVVK

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Crispr_ID: CP027418_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027418_2

3103461-3104451

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCATACAGGCAGCTTAGAAAT	PILER-CR
GTTCACTGCCATGCAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCATNCAGGCAGCTTAGAAA	CRT

16 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of CP027418_2

>merge|CP027418|2|3103461-3104451|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCATACAGGCAGCTTAGAAATAATTTAATTTCCATTGCTGTTTTCCTCATCTGTTCACTGCCATACAGGCAGCTTAGAAATTTGACACCTTTTTCACCGTCAAAAACAACAAGTTCACTGCCATACAGGCAGCTTAGAAATACGATAAACATCAGTTAGTGGGTATCCAAACGTTCACTGCCATACAGGCAGCTTAGAAAATGAGCACGCTAAGTTGATTCGGCGATAAACAGTTCACTGCCATACAGGCAGCTTAGAAATGACCACGTCACCGTTTCACCAACTATTGATGGTTCACTGCCATACAGGCAGCTTAGAAATGTTTCTAAGTACCGAACAAGAGAAAACTTTGTGTTCACTGCCATGCAGGCAGCTTAGAAAAGTGCAAACGTCGATTAATGGCAGCGTAGTAAGTTCACTGCCATGCAGGCAGCTTAGAAAAGACATAGAGCTATCAAGAACCGCCTCAGCTCGTTCACTGCCATGCAGGCAGCTTAGAAAGAAAAGATAAGTTCTTGGGCAGACCTGAGACAGTTCACTGCCATGCAGGCAGCTTAGAAATTTTCCTTTGTTTTATCTATTCACGTAAAACAGTTCACTGCCATACAGGCAGCTTAGAAACTGCAAATGTCGAATTGCTAGGCGCGGGGAAATGTTCACTGCCATGCAGGCAGCTTAGAAAATCGCCGTGAAATCAGACTCAGCGAATCGAATGGTTCACTGCCATGCAGGCAGCTTAGAAACGAAGTGGAAAAGAAAAGAGCAACTATTGATTGTTCACTGCCATACAGGCAGCTTAGAAAGGAACTAACGCGGCTACGCCATAAATTATCGTGTTCACTGCCGTACAGGCAGCTTAGAAATCATGCTGATGAATGGGATCAGGATGTTCTCTGTTCACTGCCGTATAGGCAGCTTAGAAATCTTCATTGCATCCCTGCGAGTTAAATTAATCGTTCACTGCCATAAAGGCAGCTAAAAAA

>CP027418|2|1|3103461-3103669|PILER-CR
GTTCACTGCCATACAGGCAGCTTAGAAAT	AATTTAATTTCCATTGCTGTTTTCCTCATCT
GTTCACTGCCATACAGGCAGCTTAGAAAT	TTGACACCTTTTTCACCGTCAAAAACAACAA
GTTCACTGCCATACAGGCAGCTTAGAAAT	ACGATAAACATCAGTTAGTGGGTATCCAAAC
GTTCACTGCCATACAGGCAGCTTAGAAAA

>CP027418|2|2|3103461-3104451|CRISPRCasFinder
GTTCACTGCCATACAGGCAGCTTAGAAA	TAATTTAATTTCCATTGCTGTTTTCCTCATCT
GTTCACTGCCATACAGGCAGCTTAGAAA	TTTGACACCTTTTTCACCGTCAAAAACAACAA
GTTCACTGCCATACAGGCAGCTTAGAAA	TACGATAAACATCAGTTAGTGGGTATCCAAAC
GTTCACTGCCATACAGGCAGCTTAGAAA	ATGAGCACGCTAAGTTGATTCGGCGATAAACA
GTTCACTGCCATACAGGCAGCTTAGAAA	TGACCACGTCACCGTTTCACCAACTATTGATG
GTTCACTGCCATACAGGCAGCTTAGAAA	TGTTTCTAAGTACCGAACAAGAGAAAACTTTGT
GTTCACTGCCATGCAGGCAGCTTAGAAA	AGTGCAAACGTCGATTAATGGCAGCGTAGTAA
GTTCACTGCCATGCAGGCAGCTTAGAAA	AGACATAGAGCTATCAAGAACCGCCTCAGCTC
GTTCACTGCCATGCAGGCAGCTTAGAAA	GAAAAGATAAGTTCTTGGGCAGACCTGAGACA
GTTCACTGCCATGCAGGCAGCTTAGAAA	TTTTCCTTTGTTTTATCTATTCACGTAAAACA
GTTCACTGCCATACAGGCAGCTTAGAAA	CTGCAAATGTCGAATTGCTAGGCGCGGGGAAAT
GTTCACTGCCATGCAGGCAGCTTAGAAA	ATCGCCGTGAAATCAGACTCAGCGAATCGAATG
GTTCACTGCCATGCAGGCAGCTTAGAAA	CGAAGTGGAAAAGAAAAGAGCAACTATTGATT
GTTCACTGCCATACAGGCAGCTTAGAAA	GGAACTAACGCGGCTACGCCATAAATTATCGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TCATGCTGATGAATGGGATCAGGATGTTCTCT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCTTCATTGCATCCCTGCGAGTTAAATTAATC
GTTCACTGCCATAAAGGCAGCTAAAAAA

>CP027418|2|1|3103461-3104451|CRT
GTTCACTGCCATACAGGCAGCTTAGAAA	TAATTTAATTTCCATTGCTGTTTTCCTCATCT
GTTCACTGCCATACAGGCAGCTTAGAAA	TTTGACACCTTTTTCACCGTCAAAAACAACAA
GTTCACTGCCATACAGGCAGCTTAGAAA	TACGATAAACATCAGTTAGTGGGTATCCAAAC
GTTCACTGCCATACAGGCAGCTTAGAAA	ATGAGCACGCTAAGTTGATTCGGCGATAAACA
GTTCACTGCCATACAGGCAGCTTAGAAA	TGACCACGTCACCGTTTCACCAACTATTGATG
GTTCACTGCCATACAGGCAGCTTAGAAA	TGTTTCTAAGTACCGAACAAGAGAAAACTTTGT
GTTCACTGCCATGCAGGCAGCTTAGAAA	AGTGCAAACGTCGATTAATGGCAGCGTAGTAA
GTTCACTGCCATGCAGGCAGCTTAGAAA	AGACATAGAGCTATCAAGAACCGCCTCAGCTC
GTTCACTGCCATGCAGGCAGCTTAGAAA	GAAAAGATAAGTTCTTGGGCAGACCTGAGACA
GTTCACTGCCATGCAGGCAGCTTAGAAA	TTTTCCTTTGTTTTATCTATTCACGTAAAACA
GTTCACTGCCATACAGGCAGCTTAGAAA	CTGCAAATGTCGAATTGCTAGGCGCGGGGAAAT
GTTCACTGCCATGCAGGCAGCTTAGAAA	ATCGCCGTGAAATCAGACTCAGCGAATCGAATG
GTTCACTGCCATGCAGGCAGCTTAGAAA	CGAAGTGGAAAAGAAAAGAGCAACTATTGATT
GTTCACTGCCATACAGGCAGCTTAGAAA	GGAACTAACGCGGCTACGCCATAAATTATCGT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TCATGCTGATGAATGGGATCAGGATGTTCTCT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCTTCATTGCATCCCTGCGAGTTAAATTAATC
GTTCACTGCCATAAAGGCAGCTAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP027418.1\|AVL76179.1\|3097576_3098323_+\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
CP027418.1\|AVL74771.1\|3094666_3095887_+\|flagellar-hook-protein-FlgE	unknown	unknown	gnl\|CDD\|235557
CP027418.1\|AVL74779.1\|3105571_3109051_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
CP027418.1\|AVL74777.1\|3102254_3103190_+\|flagellar-hook-filament-junction-protein-FlgL	unknown	unknown	gnl\|CDD\|181202
CP027418.1\|AVL74784.1\|3114216_3114996_-\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
CP027418.1\|AVL74770.1\|3093781_3094639_+\|flagellar-basal-body-rod-modification-protein	unknown	unknown	gnl\|CDD\|235847
CP027418.1\|AVL74775.1\|3099459_3100440_+\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	unknown	unknown	gnl\|CDD\|235559
CP027418.1\|AVL74778.1\|3104600_3105575_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
CP027418.1\|AVL74776.1\|3100582_3102226_+\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|236165
CP027418.1\|AVL74786.1\|3115276_3116020_-\|flagellar-biosynthetic-protein-FliP	unknown	unknown	gnl\|CDD\|235566
CP027418.1\|AVL74781.1\|3110343_3111288_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
CP027418.1\|AVL74782.1\|3111291_3112314_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
CP027418.1\|AVL74774.1\|3098356_3099460_+\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399
CP027418.1\|AVL74787.1\|3116032_3116491_-\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|183160
CP027418.1\|AVL74785.1\|3114998_3115268_-\|flagellar-biosynthetic-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
CP027418.1\|AVL74769.1\|3093364_3093769_+\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|235556
CP027418.1\|AVL74772.1\|3095902_3096658_+\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|183642
CP027418.1\|AVL74783.1\|3112322_3112958_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
CP027418.1\|AVL74780.1\|3109078_3110347_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220
CP027418.1\|AVL74773.1\|3096676_3097459_+\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687

Protein	Function_ID	Function_description	E-value
CP027418.1\|AVL76179.1\|3097576_3098323_+\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	1.15686e-95
CP027418.1\|AVL74771.1\|3094666_3095887_+\|flagellar-hook-protein-FlgE	gnl\|CDD\|235557	PRK05682, flgE, flagellar hook protein FlgE; Validated.	7.91565e-151
CP027418.1\|AVL74779.1\|3105571_3109051_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
CP027418.1\|AVL74777.1\|3102254_3103190_+\|flagellar-hook-filament-junction-protein-FlgL	gnl\|CDD\|181202	PRK08027, flgL, flagellar hook-filament junction protein FlgL.	1.68462e-99
CP027418.1\|AVL74784.1\|3114216_3114996_-\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	8.13678e-69
CP027418.1\|AVL74770.1\|3093781_3094639_+\|flagellar-basal-body-rod-modification-protein	gnl\|CDD\|235847	PRK06655, flgD, flagellar hook assembly protein FlgD.	2.82378e-49
CP027418.1\|AVL74775.1\|3099459_3100440_+\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	gnl\|CDD\|235559	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ.	1.71834e-140
CP027418.1\|AVL74778.1\|3104600_3105575_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	5.95009e-169
CP027418.1\|AVL74776.1\|3100582_3102226_+\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|236165	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated.	0
CP027418.1\|AVL74786.1\|3115276_3116020_-\|flagellar-biosynthetic-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	5.72963e-126
CP027418.1\|AVL74781.1\|3110343_3111288_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	6.17212e-127
CP027418.1\|AVL74782.1\|3111291_3112314_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
CP027418.1\|AVL74774.1\|3098356_3099460_+\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0
CP027418.1\|AVL74787.1\|3116032_3116491_-\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|183160	PRK11486, PRK11486, flagellar type III secretion system protein FliO.	4.6723e-29
CP027418.1\|AVL74785.1\|3114998_3115268_-\|flagellar-biosynthetic-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	6.16729e-32
CP027418.1\|AVL74769.1\|3093364_3093769_+\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	5.12262e-73
CP027418.1\|AVL74772.1\|3095902_3096658_+\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	4.1315e-110
CP027418.1\|AVL74783.1\|3112322_3112958_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	5.3285e-51
CP027418.1\|AVL74780.1\|3109078_3110347_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	3.26308e-122
CP027418.1\|AVL74773.1\|3096676_3097459_+\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	1.42546e-152

>CP027418.1|AVL74777.1|3102254_3103190_+|flagellar-hook-filament-junction-protein-FlgL
MRLSTNMIYHQRLQDMNNAQARWMDAGSQLASGKRVSKPSDDPQASSQAVRISQSENRNQQYVASRGFAKTGMTLQMSILTQMTDVTTQIDTTIIQASNQGALSDKDRHSLAEQLTGLKEQLVGLGNTTDGNGRYIFAGFKSDKPPFEIDADGNVLYHGGDKPIMQNVASDREMTTYFTGAQVFETGSDNVVNVFKALNAGIDALKIPQQDAPQADLDRAQAGMDEANRGIKAALDQISNIEAKQGLQLQEIDKLDFLADTRSIQNAARKSELLETNWTGTTTDYYKEKAMFDASQSIFKDLNSMSLFGNR
>CP027418.1|AVL74776.1|3100582_3102226_+|flagellar-hook-associated-protein-FlgK
MLNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYFSHVRREFDEFINAQYSQSRARSGDYEAYVKNCNKVDDLLTNDIEDISSNIGSFFTSLDAATSDASDKTLIDVFLGNSNALVSQFKDADRRLQEMERDINHQIENKVKDINTYAEKIAGLNQQISRVRSVSGSEPNDLLDVRDRLVNEVNSLVGVKVIEQNGNYNVTFANGLPLVTGEKANRLEAVPSSKDDSRFSIGFVGANGQAREIPDGSFRGGELSGILRSRQEVIDPAYQKLNKLALVFATKFNEVHSKGYDANGNTGKDFFEIGKGSVVSNTHNSGKADFDLSYSDVSKVTGNNYEMRFDGSEWNVTRLPESIKVSVDDSTAGTLKFDGIEVKISNSQGMTKGDSFLVKPVSGVINGMQTLISDASGFAAAGSKDSGPGDNENIKELVKLQDQKLIDGGSTFSDFYATLVNDVGSKTKQAQIDSETQNKMTESFYAQEQAISGVNMNEESIQMQKIQQFFNANAQVLKTVDDLFNALMRAF
>CP027418.1|AVL74775.1|3099459_3100440_+|flagellar-assembly-peptidoglycan-hydrolase-FlgJ
MSDMQLLQGAAFDLQSLGQLKGELNKNPEQGLRQVTQQLEATFVQMMLKSMRDALPQDGLFSSDQTRMLTSMYDQQIAQDLSQKGLGFGEMMYQQLTREQIEPNVALSNSMLPLDEKAIQTLPPFNMQQMMRHFAPTGDMLSAPFQKIKALSLNSSNFIRRLIEPAKAASQNSGISHFLVLAQAALESGWGQREILKSDGKTSHNLFGIKAGKNWQGPVTNIMTTEVINGKTIKMRDDFRVYGSYEEAIADYISLLTENPRYKDVKKAPTPEIAARRLHQAGYATDPSYSDKLITLINQIRGHQPTANTSASRAVQAYTIDLNDIF
>CP027418.1|AVL74774.1|3098356_3099460_+|flagellar-basal-body-P-ring-protein-FlgI
MKNKVLILLSLFCCFVFAAHSERIKDLTTVQGVRDNALIGYGLVVGLDGTGDQTMQTPFTTQSLNNMLSQMGITVPPGTNMQLKNVAAVMVTAKLPPFARTGQSVDIVVSSMGNAKSLRGGTLLMTPLKGVDGQVYAMAQGNILVGGAGASGGGSSIKVNQLNGGRITGGATIERELPSNFGQSGAINLQLNEDSFTLAQDIADAINRMGGVGSASALDSRTVQLLVPANNRDQVRFLSRVQELNVRTPMAEAKVILNSRTGSVVINRSVTLESCAVAHGSLAVTVERQTQVSQPDTPFAGGQTVVTRNTNVGIRDQGGSLQKVNASVQLNQVIQALNTLGATPNDLMSILQAMESAGCLRAKLEII
>CP027418.1|AVL76179.1|3097576_3098323_+|flagellar-basal-body-L-ring-protein-FlgH
MIESSTISQQQKIALQTPLIATKQVGLVIALVLITSGCAHIKSRPLVDTQTTAIPSAPTAPAPNGSIFQSAQPAYYGYQPLFEDRRPRNVGDILTINLQENVSASKNSSANANRTGKTGFLAAILPGFMQGWIGGKNTELDIKGNSDFSGKGGANANNTFKGTITVTVDQLLANGNLHVVGEKRIAINQGTESIRFSGVVNPRTIGSDNHVSSTQVADARIEYVGDGYINESQNMGWLQRFFLNVSPY
>CP027418.1|AVL74773.1|3096676_3097459_+|flagellar-basal-body-rod-protein-FlgG
MIRSLWIAKTGLDAQQTNLDVISNNLANVSTNGFKRQRAVFEDLMYQNIRQPGAMSSEQTSLPSGLQMGTGARPVATMRVHAQGALNKTGNTNDIAIRGQGFLHVQMPDGTDAYTRDGALQPNQDGQLVTSSGYQIVPAIMIPDNANSMSIARDGTVSITVYGDNQPQQIGQITLTTFINDAGLESMGENLYMETASSGAPNESAPGTNGAGLIYQNMLETSNVNVAEELVNMIQTQRAYEINSKAVSASDQMLQRLTQL
>CP027418.1|AVL74772.1|3095902_3096658_+|flagellar-basal-body-rod-protein-FlgF
MDHVIYTAMGGARHALENQAVVSNNIANVSTAGFKAQLSAMRAVPINGDSEPTRTLVVASTPGADMSQGPLNYTGKSTDVALNDKHFLAVELADGSEAYTRNGNIQVSSEGELMIGERRLQGDGGPINVPPNAELTIGTDGTVTALLATDPPTMLGQIGRLKVVEAQPQDLLRGEDGLFHLSPQGQAANGNVLPQSERAIVTAGVIEGSNVNAAEAMVSMIANARHFEMQMKVVRSADENAQRANQLLAVS
>CP027418.1|AVL74771.1|3094666_3095887_+|flagellar-hook-protein-FlgE
MSFSQAVSGLNAASAGLDSIGNNISNSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQNFKDGPITRTDRPTDVAISGNGFFRVQDKNGDIYYSRDGQFLRDKSGNLVNNQGMIVTGYPAGVDEDGNVTIQSGGVPAGINIPTDMMDAKKSDLAKLTVNLNSEDKVKDKKFDITKPDDSATYNFSTTMTAFDSQGNTHEISVYFVKESDNNWTAYAKDTNDTEAKKLGELEFDGNGKLKDADKATFAFAYNGLNGADNGTLNVDLSKTRQQKVSESSVSAIDVDGFPAGEYTTFKIEDNGLITANYSNQQKRVVGQVALSAFANPNGLVSQGGNVWASSNASGNPMDGVPGVGQYGKLTSGALESSNVDMSQELISMIVMQRNYQSNAQTIKTQDQMLQTLVNLR
>CP027418.1|AVL74770.1|3093781_3094639_+|flagellar-basal-body-rod-modification-protein
MGIAATMYDSLDNTTAGPEPAASNVPKKSQSDDMRDTFLKMIVTQMQNQDPTNPMENTDLTSQLAQIATLESMNKLSDSVSGISQQIGSGQSLQATQLVGKGVLIPRNEIILAPLKKESTGEDSSIIKPSNPLPDEGISPDSPSNFALSDKSVMGDEGGSEEPQSEFISSPFGFFLPKLADNVEITIRDKNRMVVRTITYDTEVKPDIYDMAWDGRDNKGNLVADTKGKYYFDVKAVRAGAEVEVTKLGYTRVNGVTPGSDAPLLDVGIGQSVPLSSIFKVYPSS
>CP027418.1|AVL74769.1|3093364_3093769_+|flagellar-basal-body-rod-protein-FlgC
MALLSIFDISASALTAQSQRLNVSASNMANAESVAGPDGQPYRAKQVVFQMAPQGRNEVGGVRVSELIEDPAPPRMEYKPGHPLADEKGYVQMPNVDMVGEMINTISASRSYQANLEVMNTAKTLLQKTLTIGQ
>CP027418.1|AVL74778.1|3104600_3105575_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDFSPSDLKTILHSKRANMYYLEHCRVMQKDGRVLYFTEAKNENLYFNIPIANTTVLLLGTGTSITQAAMRMLSQAGVLVGFCGGGGTPLYMSTEVEWMTPQGEYRPTEYLQSWLSFWFNDEKRLAAAKVLQQSRITYLQKVWQSSRELQNEGFVYQDSTIQSALKAFHNRTIAAQDTQELLLTEAQLTKTLYKYAANNTGQKNFTRQHQAVDKANSFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDIADLIKDAVVLPWAFICGKEGATEQEFRQQILQSFVDHQSLDFMFDVVKSLALQQNEAQQQVTQL
>CP027418.1|AVL74779.1|3105571_3109051_+|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFISQCEKHALKRTRRILDAFANRIGDNTWQTLITQEGLHTVQKLLRRSASRNTAVSCHWIRSRSRSQLLWVVGRKNKFNEQGYVPVNRTEKSLLGSEQGNDWKYLPLINGFVRLAALLHDWGKASQLFQDKLNPASNMRFKGDPLRHEWVSSLLFSALVKSQKEPNSDENWLDALITSSWHEQQLQSWMKGKNQLEKPLNQLPDAASLLVWLIVSHHRLPFLANKTERLQYADQPCNSLAQLLDIVDKQWGYQNLYDASEYAQRIQQCFEFPHGLLSESKVWRQALSQAAEHLKHQLPLFDEALSNGCWRLVAEQARLCLMLGDHNYSSKEADPTWQSNMALYANTQRVNGQTAYKQRLDEHLVNVANIAANITEYLPFFVIEPPVASDINLLKQHKNASGQFSWQEDVVNTIEQYREQQQDKTEGYFVVNMASTGCGKTVANAKIMQALSEDKQSLRFILALGLRALTLQTGDEYRTRLGIKDDNLAVLIGSKAVLDLHQEDKQKTIQQELQLAEFGSESQDRLFDDEGLELNWSEEKWQGSLPEEELATVLTRPKDRALLYAPILACTIDHIMGATETLRGGRYILPYLRLMSSDLVIDEIDDFTGNDPVAIGRLVYLAGALGRKVMISSATIPPTLAVFYFNAYQQGWHIHALSHQKSLKVGCVWVDEGQYDEKKDKCIHACQIATITTADDELTVSHYRQYHNNFIEKRVKALRALVARRKAFILPIQKEQGKDLQTQYFAHIQQAILRLHQAHAYSERETQLQVSFGVVRVANIPVCVALTHYLLAAQWPEEVEIRTMAYHSQQVLLLRHEQEKHLDGVLKRKEKEGEQPEAFQNPIVRQHLDQAHRNGKAKHLIFILVATPVEEVGRDHDFDWAVIEPSSYRSIVQMAGRVRRHRAGEVASPNIALLQYNWVAFQGNNQRDAFSKPGYENRNLNLSLSTYNLSELVDESQLLKSVDAIPRIQPITGWKTQQTTNLACLEHASIERLMGDVSTAKPAKAAVRTRSTFLSSAVLPKNRPTTLWGYTSGGWWMTALPQQFASFRESEPTKRVSLILSAKNRLHFCEYDKDSGWVTKEDEYGIGFQPLAEPLKQRLWLIRDYQQSLASRENEYQQAEQLSKRYGEISFLPRKSSGVFYHYNDQMGLSTFKVFE
>CP027418.1|AVL74780.1|3109078_3110347_+|type-I-F-CRISPR-associated-protein-Csy1
MLDPAIEAFFTERKESWLKKNVKASMSEGEIQQLQQKCDAILSLAQWLPSAAKRAGQISLSTHPCTFSHPSSRKNKNGYVTPILARAEHTNDGLLRTGNVMVETDALGNAAALDVYKFLTLELQDNRTLLAHIKDETPLAKDILNQGDEEYHLLRDGFLAMVAADKTVITSSKIKQVYFPVWLEDNEYHLLSPLTPSGLVFELRKRIDTIRFSEQTKALRDLKRKGEFSQVGYKEIYGVTTIGYGGTKPQNISVLNNQNAGKAHLLPSLPPQIAQRKRRLPTYDFFTNTVNPWQVKETLEAFHGLISLPKAQRGSRFIEYRDRRIQEYVDYIMLTMWEVRRGFEQNNIQLPTQLAKVQQIWLFPDQQQRNNSDEWLEGIITLIAQQFMRHYKKVLGKKAIALGNDELAAIAQVIAINKELLR
>CP027418.1|AVL74781.1|3110343_3111288_+|type-I-F-CRISPR-associated-protein-Csy2
MSSTYILKLPHIKIQNANALSSPYTIGFPAMTAWLGFMHALERKLRADGHLDIVFDSIAVISHACDLQTYRGPNDYVNSIVGTANPLNSDGTRSAFIEEARCHLDVSLLIRYGVNDGGKTKALPTQSPILEVIYDLIQTMKLAGGDILSLDKPTAHILQSDEVDGESRQGLLNSVMPGYALIERRDLMIRAMEDGQDAMDALLDYVVVENNCVEWGNENEGKSQFEWRAQRKLAGWVVPIATGYQGVSPLAQAKNQRDLDVPHRFAESVVTLGEFILANRANNINEILWQYGYDEPNNLYLCQQVASKFISSGE
>CP027418.1|AVL74782.1|3111291_3112314_+|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDVASVLAFEKKLVPSDGYFYGTCWENKSHFTPLSLQEKSVRGTISNRLKGAVKNDPLKLNSEVEKANLQTVDACALGTEQDTLVHQFTLKILGGVETPSACNNVLFKKGYVQAAKGYIEKEGFRELGYRYAQNVANGRFLWRNRVGAEHIEVVVKVLNKGQSMEWVFDATQYSIHQFDTQDEKVAQLGEKIATALAHPQGALLLEITTYSQLGKAQEVYPSEELVMDKGKGDKSKILYHVNGHAAMHSQKIGNALRSIDTWYPAYGTESGAGAIAIEPYGAVTNLGTAFRTPKDNQDFYTLFDKWARGEKLSRIEDEHYVMAVLVRGGVFGESDK
>CP027418.1|AVL74783.1|3112322_3112958_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNYYQEVTLLPDSTVSVDFLWQKVYQQIHIALADNQTAEGQSAIAVAFPEYGSVGFRLGRKIRLHAKTPEELEQLNLPKWLARLMDYAHIKSIQTVPEQSVPVSYIRRHVKGQNRIEADMQQKARLWSEKSGQSVAQCLEVLSKSRPKANNRLPFIWVTSLHAKNEKTGSRPFPLFIEKVVATQMQAGMFNCYGLSQLSNDQTLVATVPHF
>CP027418.1|AVL74784.1|3114216_3114996_-|flagellar-type-III-secretion-system-protein-FliR
MLTITSETLTLWLSQGFYPFIRLLALLGTAPFFNEKQAITKVRVALAFFVVLIVSPQLPVVNIPLFSAMGLWVIVQQIVIGVAMGLTMQIAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRIFNVITILLFLAFDGHLWLIYIIVNSFELIPIQTAPLNRDGFWVFVQFANTLFINGLMLALPFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGVIISILPRYTERLIHQAFEQLSLMFNLFI
>CP027418.1|AVL74785.1|3114998_3115268_-|flagellar-biosynthetic-protein-FliQ
MTPESVMAMGTEAMKIALMLAAPLLLAALAAGLIISLLQAATQVNEMTLSFIPKILSVISVIIIAGPWMLNLLTDYMRTLLSNLPFIIG
>CP027418.1|AVL74786.1|3115276_3116020_-|flagellar-biosynthetic-protein-FliP
MLPRKSLLMIAVLLFALPSSASAALPAVISHSLADGGQTWSLPVQTLLFLTLLGFIPALLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQPFSEDKISLEVALEKGTAPLRTFMLGQTRESDLALFARIAKVGEIQEAKDVPLRILVPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQSFFN
>CP027418.1|AVL74787.1|3116032_3116491_-|flagellar-biosynthetic-protein-FliO
MAITNQAEQAPASVPFLSTSVPSSELNAPAIDHSNSLTQISGSLGIIILLILIGAWLVKKLGFAPKKMGKEQIVKVTSSCSLGNKERVVVVEVNNECLVLGVTAQNISLLHQYPAQDKTTVSSVIEPLTFQSVLKKKQDAADHAASVTPLYK

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Crispr_ID: CP027418_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027418_3

3113089-3113837

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGTATAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRT

12 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of CP027418_3

>merge|CP027418|3|3113089-3113837|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTATAGGCAGCTTAGAAACAATCCATTTGAGTGCAATCTAAGTGGCTAATGTTCACTGCCGTATAGGCAGCTTAGAAATGACTTAGTTGACGCAGAGCGGGGGTATCGCAGTTCACTGCCGTATAGGCAGCTTAGAAATCAATAAATGTTGCTGATACAGAATAAACACCGTTCACTGCCGTATAGGCAGCTTAGAAAACAACAAAAGTGGAAAAGTGTCAGGGAGAGACGTTCACTGCCGTATAGGCAGCTTAGAAACTGAAACATTAGAAAGTCGTGCTCAAGATATTGTTCACTGCCGTATAGGCAGCTTAGAAATTACTCTGATGCTACGTTCGAAAAAGCGTGGAGTTCACTGCCGTATAGGCAGCTTAGAAAGGATCGCAATAATTCGACTTCAAGCTCTACTCGTTCACTGCCGTATAGGCAGCTTAGAAAAGCCCACTCGTAAATGAGCTGTGTAATTAACTGTTCACTGCCGTATAGGCAGCTTAGAAAAGCGAATATCAACGCACCCACCGTGTCGATTTGTTCACTGCCGTATAGGCAGCTTAGAAATTGTGCTTTCTATTGATCATCCCTGATGTTGAGTTCACTGCCGTATAGGCAGCTTAGAAACGATGATTCAACACCAACAAGCGCATGTAACGTGTTCACTGCCGTATAGGCAGCTCAGAAAAGTGGATTAAAGAGCTTAATTTATCAACTTAAGTTTACTGCCATATAGGCAGTTTAGAGA

>CP027418|3|2|3113089-3113777|PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	CAATCCATTTGAGTGCAATCTAAGTGGCTAAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGACTTAGTTGACGCAGAGCGGGGGTATCGCA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCAATAAATGTTGCTGATACAGAATAAACACC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACAACAAAAGTGGAAAAGTGTCAGGGAGAGAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CTGAAACATTAGAAAGTCGTGCTCAAGATATT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTACTCTGATGCTACGTTCGAAAAAGCGTGGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	GGATCGCAATAATTCGACTTCAAGCTCTACTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCCCACTCGTAAATGAGCTGTGTAATTAACT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCGAATATCAACGCACCCACCGTGTCGATTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTGTGCTTTCTATTGATCATCCCTGATGTTGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGATGATTCAACACCAACAAGCGCATGTAACGT
GTTCACTGCCGTATAGGCAGCTCAGAAA

>CP027418|3|3|3113089-3113837|CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	CAATCCATTTGAGTGCAATCTAAGTGGCTAAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGACTTAGTTGACGCAGAGCGGGGGTATCGCA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCAATAAATGTTGCTGATACAGAATAAACACC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACAACAAAAGTGGAAAAGTGTCAGGGAGAGAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CTGAAACATTAGAAAGTCGTGCTCAAGATATT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTACTCTGATGCTACGTTCGAAAAAGCGTGGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	GGATCGCAATAATTCGACTTCAAGCTCTACTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCCCACTCGTAAATGAGCTGTGTAATTAACT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCGAATATCAACGCACCCACCGTGTCGATTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTGTGCTTTCTATTGATCATCCCTGATGTTGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGATGATTCAACACCAACAAGCGCATGTAACGT
GTTCACTGCCGTATAGGCAGCTCAGAAA	AGTGGATTAAAGAGCTTAATTTATCAACTTAA
GTTTACTGCCATATAGGCAGTTTAGAGA

>CP027418|3|2|3113089-3113837|CRT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CAATCCATTTGAGTGCAATCTAAGTGGCTAAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGACTTAGTTGACGCAGAGCGGGGGTATCGCA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCAATAAATGTTGCTGATACAGAATAAACACC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACAACAAAAGTGGAAAAGTGTCAGGGAGAGAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CTGAAACATTAGAAAGTCGTGCTCAAGATATT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTACTCTGATGCTACGTTCGAAAAAGCGTGGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	GGATCGCAATAATTCGACTTCAAGCTCTACTC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCCCACTCGTAAATGAGCTGTGTAATTAACT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCGAATATCAACGCACCCACCGTGTCGATTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTGTGCTTTCTATTGATCATCCCTGATGTTGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGATGATTCAACACCAACAAGCGCATGTAACGT
GTTCACTGCCGTATAGGCAGCTCAGAAA	AGTGGATTAAAGAGCTTAATTTATCAACTTAA
GTTTACTGCCATATAGGCAGTTTAGAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP027418.1\|AVL74793.1\|3120408_3121773_-\|flagellum-specific-ATP-synthase-FliL	unknown	unknown	gnl\|CDD\|181182
CP027418.1\|AVL74779.1\|3105571_3109051_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
CP027418.1\|AVL74777.1\|3102254_3103190_+\|flagellar-hook-filament-junction-protein-FlgL	unknown	unknown	gnl\|CDD\|181202
CP027418.1\|AVL74789.1\|3116922_3117930_-\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849
CP027418.1\|AVL74780.1\|3109078_3110347_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220
CP027418.1\|AVL74775.1\|3099459_3100440_+\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	unknown	unknown	gnl\|CDD\|235559
CP027418.1\|AVL74778.1\|3104600_3105575_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
CP027418.1\|AVL74788.1\|3116513_3116930_-\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|181183
CP027418.1\|AVL74776.1\|3100582_3102226_+\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|236165
CP027418.1\|AVL74786.1\|3115276_3116020_-\|flagellar-biosynthetic-protein-FliP	unknown	unknown	gnl\|CDD\|235566
CP027418.1\|AVL74781.1\|3110343_3111288_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
CP027418.1\|AVL74782.1\|3111291_3112314_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
CP027418.1\|AVL74774.1\|3098356_3099460_+\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399
CP027418.1\|AVL74787.1\|3116032_3116491_-\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|183160
CP027418.1\|AVL74785.1\|3114998_3115268_-\|flagellar-biosynthetic-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
CP027418.1\|AVL74792.1\|3119953_3120397_-\|flagella-biosynthesis-chaperone-FliJ	unknown	unknown	gnl\|CDD\|235563
CP027418.1\|AVL74784.1\|3114216_3114996_-\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
CP027418.1\|AVL74783.1\|3112322_3112958_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
CP027418.1\|AVL74791.1\|3118579_3119953_-\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|236652
CP027418.1\|AVL74790.1\|3117935_3118415_-\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|235909

Protein	Function_ID	Function_description	E-value
CP027418.1\|AVL74793.1\|3120408_3121773_-\|flagellum-specific-ATP-synthase-FliL	gnl\|CDD\|181182	PRK07960, fliI, flagellum-specific ATP synthase FliI.	0
CP027418.1\|AVL74779.1\|3105571_3109051_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
CP027418.1\|AVL74777.1\|3102254_3103190_+\|flagellar-hook-filament-junction-protein-FlgL	gnl\|CDD\|181202	PRK08027, flgL, flagellar hook-filament junction protein FlgL.	1.68462e-99
CP027418.1\|AVL74789.1\|3116922_3117930_-\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	6.49433e-161
CP027418.1\|AVL74780.1\|3109078_3110347_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	3.26308e-122
CP027418.1\|AVL74775.1\|3099459_3100440_+\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	gnl\|CDD\|235559	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ.	1.71834e-140
CP027418.1\|AVL74778.1\|3104600_3105575_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	5.95009e-169
CP027418.1\|AVL74788.1\|3116513_3116930_-\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|181183	PRK07963, fliN, flagellar motor switch protein FliN; Validated.	1.99324e-76
CP027418.1\|AVL74776.1\|3100582_3102226_+\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|236165	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated.	0
CP027418.1\|AVL74786.1\|3115276_3116020_-\|flagellar-biosynthetic-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	5.72963e-126
CP027418.1\|AVL74781.1\|3110343_3111288_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	6.17212e-127
CP027418.1\|AVL74782.1\|3111291_3112314_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
CP027418.1\|AVL74774.1\|3098356_3099460_+\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0
CP027418.1\|AVL74787.1\|3116032_3116491_-\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|183160	PRK11486, PRK11486, flagellar type III secretion system protein FliO.	4.6723e-29
CP027418.1\|AVL74785.1\|3114998_3115268_-\|flagellar-biosynthetic-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	6.16729e-32
CP027418.1\|AVL74792.1\|3119953_3120397_-\|flagella-biosynthesis-chaperone-FliJ	gnl\|CDD\|235563	PRK05689, fliJ, flagella biosynthesis chaperone FliJ.	1.72654e-38
CP027418.1\|AVL74784.1\|3114216_3114996_-\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	8.13678e-69
CP027418.1\|AVL74783.1\|3112322_3112958_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	5.3285e-51
CP027418.1\|AVL74791.1\|3118579_3119953_-\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|236652	PRK10118, PRK10118, flagellar hook length control protein FliK.	3.22298e-28
CP027418.1\|AVL74790.1\|3117935_3118415_-\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|235909	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed.	1.31345e-62

>CP027418.1|AVL74783.1|3112322_3112958_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNYYQEVTLLPDSTVSVDFLWQKVYQQIHIALADNQTAEGQSAIAVAFPEYGSVGFRLGRKIRLHAKTPEELEQLNLPKWLARLMDYAHIKSIQTVPEQSVPVSYIRRHVKGQNRIEADMQQKARLWSEKSGQSVAQCLEVLSKSRPKANNRLPFIWVTSLHAKNEKTGSRPFPLFIEKVVATQMQAGMFNCYGLSQLSNDQTLVATVPHF
>CP027418.1|AVL74782.1|3111291_3112314_+|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDVASVLAFEKKLVPSDGYFYGTCWENKSHFTPLSLQEKSVRGTISNRLKGAVKNDPLKLNSEVEKANLQTVDACALGTEQDTLVHQFTLKILGGVETPSACNNVLFKKGYVQAAKGYIEKEGFRELGYRYAQNVANGRFLWRNRVGAEHIEVVVKVLNKGQSMEWVFDATQYSIHQFDTQDEKVAQLGEKIATALAHPQGALLLEITTYSQLGKAQEVYPSEELVMDKGKGDKSKILYHVNGHAAMHSQKIGNALRSIDTWYPAYGTESGAGAIAIEPYGAVTNLGTAFRTPKDNQDFYTLFDKWARGEKLSRIEDEHYVMAVLVRGGVFGESDK
>CP027418.1|AVL74781.1|3110343_3111288_+|type-I-F-CRISPR-associated-protein-Csy2
MSSTYILKLPHIKIQNANALSSPYTIGFPAMTAWLGFMHALERKLRADGHLDIVFDSIAVISHACDLQTYRGPNDYVNSIVGTANPLNSDGTRSAFIEEARCHLDVSLLIRYGVNDGGKTKALPTQSPILEVIYDLIQTMKLAGGDILSLDKPTAHILQSDEVDGESRQGLLNSVMPGYALIERRDLMIRAMEDGQDAMDALLDYVVVENNCVEWGNENEGKSQFEWRAQRKLAGWVVPIATGYQGVSPLAQAKNQRDLDVPHRFAESVVTLGEFILANRANNINEILWQYGYDEPNNLYLCQQVASKFISSGE
>CP027418.1|AVL74780.1|3109078_3110347_+|type-I-F-CRISPR-associated-protein-Csy1
MLDPAIEAFFTERKESWLKKNVKASMSEGEIQQLQQKCDAILSLAQWLPSAAKRAGQISLSTHPCTFSHPSSRKNKNGYVTPILARAEHTNDGLLRTGNVMVETDALGNAAALDVYKFLTLELQDNRTLLAHIKDETPLAKDILNQGDEEYHLLRDGFLAMVAADKTVITSSKIKQVYFPVWLEDNEYHLLSPLTPSGLVFELRKRIDTIRFSEQTKALRDLKRKGEFSQVGYKEIYGVTTIGYGGTKPQNISVLNNQNAGKAHLLPSLPPQIAQRKRRLPTYDFFTNTVNPWQVKETLEAFHGLISLPKAQRGSRFIEYRDRRIQEYVDYIMLTMWEVRRGFEQNNIQLPTQLAKVQQIWLFPDQQQRNNSDEWLEGIITLIAQQFMRHYKKVLGKKAIALGNDELAAIAQVIAINKELLR
>CP027418.1|AVL74779.1|3105571_3109051_+|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFISQCEKHALKRTRRILDAFANRIGDNTWQTLITQEGLHTVQKLLRRSASRNTAVSCHWIRSRSRSQLLWVVGRKNKFNEQGYVPVNRTEKSLLGSEQGNDWKYLPLINGFVRLAALLHDWGKASQLFQDKLNPASNMRFKGDPLRHEWVSSLLFSALVKSQKEPNSDENWLDALITSSWHEQQLQSWMKGKNQLEKPLNQLPDAASLLVWLIVSHHRLPFLANKTERLQYADQPCNSLAQLLDIVDKQWGYQNLYDASEYAQRIQQCFEFPHGLLSESKVWRQALSQAAEHLKHQLPLFDEALSNGCWRLVAEQARLCLMLGDHNYSSKEADPTWQSNMALYANTQRVNGQTAYKQRLDEHLVNVANIAANITEYLPFFVIEPPVASDINLLKQHKNASGQFSWQEDVVNTIEQYREQQQDKTEGYFVVNMASTGCGKTVANAKIMQALSEDKQSLRFILALGLRALTLQTGDEYRTRLGIKDDNLAVLIGSKAVLDLHQEDKQKTIQQELQLAEFGSESQDRLFDDEGLELNWSEEKWQGSLPEEELATVLTRPKDRALLYAPILACTIDHIMGATETLRGGRYILPYLRLMSSDLVIDEIDDFTGNDPVAIGRLVYLAGALGRKVMISSATIPPTLAVFYFNAYQQGWHIHALSHQKSLKVGCVWVDEGQYDEKKDKCIHACQIATITTADDELTVSHYRQYHNNFIEKRVKALRALVARRKAFILPIQKEQGKDLQTQYFAHIQQAILRLHQAHAYSERETQLQVSFGVVRVANIPVCVALTHYLLAAQWPEEVEIRTMAYHSQQVLLLRHEQEKHLDGVLKRKEKEGEQPEAFQNPIVRQHLDQAHRNGKAKHLIFILVATPVEEVGRDHDFDWAVIEPSSYRSIVQMAGRVRRHRAGEVASPNIALLQYNWVAFQGNNQRDAFSKPGYENRNLNLSLSTYNLSELVDESQLLKSVDAIPRIQPITGWKTQQTTNLACLEHASIERLMGDVSTAKPAKAAVRTRSTFLSSAVLPKNRPTTLWGYTSGGWWMTALPQQFASFRESEPTKRVSLILSAKNRLHFCEYDKDSGWVTKEDEYGIGFQPLAEPLKQRLWLIRDYQQSLASRENEYQQAEQLSKRYGEISFLPRKSSGVFYHYNDQMGLSTFKVFE
>CP027418.1|AVL74778.1|3104600_3105575_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDFSPSDLKTILHSKRANMYYLEHCRVMQKDGRVLYFTEAKNENLYFNIPIANTTVLLLGTGTSITQAAMRMLSQAGVLVGFCGGGGTPLYMSTEVEWMTPQGEYRPTEYLQSWLSFWFNDEKRLAAAKVLQQSRITYLQKVWQSSRELQNEGFVYQDSTIQSALKAFHNRTIAAQDTQELLLTEAQLTKTLYKYAANNTGQKNFTRQHQAVDKANSFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDIADLIKDAVVLPWAFICGKEGATEQEFRQQILQSFVDHQSLDFMFDVVKSLALQQNEAQQQVTQL
>CP027418.1|AVL74777.1|3102254_3103190_+|flagellar-hook-filament-junction-protein-FlgL
MRLSTNMIYHQRLQDMNNAQARWMDAGSQLASGKRVSKPSDDPQASSQAVRISQSENRNQQYVASRGFAKTGMTLQMSILTQMTDVTTQIDTTIIQASNQGALSDKDRHSLAEQLTGLKEQLVGLGNTTDGNGRYIFAGFKSDKPPFEIDADGNVLYHGGDKPIMQNVASDREMTTYFTGAQVFETGSDNVVNVFKALNAGIDALKIPQQDAPQADLDRAQAGMDEANRGIKAALDQISNIEAKQGLQLQEIDKLDFLADTRSIQNAARKSELLETNWTGTTTDYYKEKAMFDASQSIFKDLNSMSLFGNR
>CP027418.1|AVL74776.1|3100582_3102226_+|flagellar-hook-associated-protein-FlgK
MLNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYFSHVRREFDEFINAQYSQSRARSGDYEAYVKNCNKVDDLLTNDIEDISSNIGSFFTSLDAATSDASDKTLIDVFLGNSNALVSQFKDADRRLQEMERDINHQIENKVKDINTYAEKIAGLNQQISRVRSVSGSEPNDLLDVRDRLVNEVNSLVGVKVIEQNGNYNVTFANGLPLVTGEKANRLEAVPSSKDDSRFSIGFVGANGQAREIPDGSFRGGELSGILRSRQEVIDPAYQKLNKLALVFATKFNEVHSKGYDANGNTGKDFFEIGKGSVVSNTHNSGKADFDLSYSDVSKVTGNNYEMRFDGSEWNVTRLPESIKVSVDDSTAGTLKFDGIEVKISNSQGMTKGDSFLVKPVSGVINGMQTLISDASGFAAAGSKDSGPGDNENIKELVKLQDQKLIDGGSTFSDFYATLVNDVGSKTKQAQIDSETQNKMTESFYAQEQAISGVNMNEESIQMQKIQQFFNANAQVLKTVDDLFNALMRAF
>CP027418.1|AVL74775.1|3099459_3100440_+|flagellar-assembly-peptidoglycan-hydrolase-FlgJ
MSDMQLLQGAAFDLQSLGQLKGELNKNPEQGLRQVTQQLEATFVQMMLKSMRDALPQDGLFSSDQTRMLTSMYDQQIAQDLSQKGLGFGEMMYQQLTREQIEPNVALSNSMLPLDEKAIQTLPPFNMQQMMRHFAPTGDMLSAPFQKIKALSLNSSNFIRRLIEPAKAASQNSGISHFLVLAQAALESGWGQREILKSDGKTSHNLFGIKAGKNWQGPVTNIMTTEVINGKTIKMRDDFRVYGSYEEAIADYISLLTENPRYKDVKKAPTPEIAARRLHQAGYATDPSYSDKLITLINQIRGHQPTANTSASRAVQAYTIDLNDIF
>CP027418.1|AVL74774.1|3098356_3099460_+|flagellar-basal-body-P-ring-protein-FlgI
MKNKVLILLSLFCCFVFAAHSERIKDLTTVQGVRDNALIGYGLVVGLDGTGDQTMQTPFTTQSLNNMLSQMGITVPPGTNMQLKNVAAVMVTAKLPPFARTGQSVDIVVSSMGNAKSLRGGTLLMTPLKGVDGQVYAMAQGNILVGGAGASGGGSSIKVNQLNGGRITGGATIERELPSNFGQSGAINLQLNEDSFTLAQDIADAINRMGGVGSASALDSRTVQLLVPANNRDQVRFLSRVQELNVRTPMAEAKVILNSRTGSVVINRSVTLESCAVAHGSLAVTVERQTQVSQPDTPFAGGQTVVTRNTNVGIRDQGGSLQKVNASVQLNQVIQALNTLGATPNDLMSILQAMESAGCLRAKLEII
>CP027418.1|AVL74784.1|3114216_3114996_-|flagellar-type-III-secretion-system-protein-FliR
MLTITSETLTLWLSQGFYPFIRLLALLGTAPFFNEKQAITKVRVALAFFVVLIVSPQLPVVNIPLFSAMGLWVIVQQIVIGVAMGLTMQIAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRIFNVITILLFLAFDGHLWLIYIIVNSFELIPIQTAPLNRDGFWVFVQFANTLFINGLMLALPFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGVIISILPRYTERLIHQAFEQLSLMFNLFI
>CP027418.1|AVL74785.1|3114998_3115268_-|flagellar-biosynthetic-protein-FliQ
MTPESVMAMGTEAMKIALMLAAPLLLAALAAGLIISLLQAATQVNEMTLSFIPKILSVISVIIIAGPWMLNLLTDYMRTLLSNLPFIIG
>CP027418.1|AVL74786.1|3115276_3116020_-|flagellar-biosynthetic-protein-FliP
MLPRKSLLMIAVLLFALPSSASAALPAVISHSLADGGQTWSLPVQTLLFLTLLGFIPALLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQPFSEDKISLEVALEKGTAPLRTFMLGQTRESDLALFARIAKVGEIQEAKDVPLRILVPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQSFFN
>CP027418.1|AVL74787.1|3116032_3116491_-|flagellar-biosynthetic-protein-FliO
MAITNQAEQAPASVPFLSTSVPSSELNAPAIDHSNSLTQISGSLGIIILLILIGAWLVKKLGFAPKKMGKEQIVKVTSSCSLGNKERVVVVEVNNECLVLGVTAQNISLLHQYPAQDKTTVSSVIEPLTFQSVLKKKQDAADHAASVTPLYK
>CP027418.1|AVL74788.1|3116513_3116930_-|flagellar-motor-switch-protein-FliN
MSEAKNSPDASTNHASEDLWAEALEQQKKAESASAGAQAFDNLDGQNPLNQLSDIDMIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSDNYGIRITDIITPSERMRRLSR
>CP027418.1|AVL74789.1|3116922_3117930_-|flagellar-motor-switch-protein-FliM
MSDNILSQAEIDALLNDDAPSNDTPVPENQGKDNIRPYDPNTQRRVIRERMQSLEIINERFARQFRMGLFNMLRRSPDITVGGIKIEPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRQEGKEFTNTEQRIINRMLKLALGAYRDAWRPIADIEVEYVRSEIQVKFTNITTSPNDIVVTTPFLVEIGNTVGEFSICIPIAMIEPLRERLINPPMEQGHQENETWVTNLVTQVKRSELELVANFVDIPMRISRLLQLQKGDVLPIEKPDRLIVNVDGVPVLTSQYGTQNGQYALRVEHLINPVLNTLDEESTNE
>CP027418.1|AVL74790.1|3117935_3118415_-|flagellar-basal-body-associated-protein-FliL
MSSRKESKSSHKGLIILLALIALAGAGFGGYTWWTTQQNTQTASEEEKRPNMPQPIFMELEPFTVNLAGADNGPDRVLYIHITLRLANEKSRKQLHEYLPEVRSRLLLLLSEQKSKNIEVHEGKLQLMKDIKQTLTPTLIPGDTDQDISDVLFTTFILR
>CP027418.1|AVL74791.1|3118579_3119953_-|flagellar-hook-length-control-protein-FliK
MDINATIVPVAPPAKTIKSANEQQNGPKDDENQAPALPFQALLDNQQPAPKNTAVNTAVDEQALNKEIVADKLAVSDKTSASPASKTPTHGENTLEQLNFTRNLRGDGVQTALQSELLVGENSSEQPWLNNLKLSLSSQIHPSANGQLAAESLPKLGAFNQKMQQLNGDLEDITLTSDKLLDKSQLVLDEQEDKPAITAFIKNEKDERRDQPLLPLDNQRDVRSKNLTADFMPLNKKVSDKEPQSGLPTFSTDTLGSNGKGAFVTQSETSAFTTATTHQTSTQPISMMPTTSVAQAAAMNAPTVAPTLHLTSQLGSEAWQQQLSQHMLFFSRQGVSQAQIRLHPEELGSLNVHLRIEDNQAVMHFVSPHSHVRAAMESMMPVLRNALQESGIHLAQGSVGQDNLGNSSDNQQHNTHQHDGHIQATHATAGAVGISEANASVAAQKSVSRQGGINTFA
>CP027418.1|AVL74792.1|3119953_3120397_-|flagella-biosynthesis-chaperone-FliJ
MANNNALTTLLSLAVEASEEAAKVLAQVRQTHTQMAQQLTMLENYQTEYRQTLNQTLHSGMASDKWQNYQQFLVTLELTIEQQQQQLNLWEQKVDEANRHWQEKQQRVNAFDTLIQRAEHTEHQRQNRIEQKQMDEFAQRATLRRPQ
>CP027418.1|AVL74793.1|3120408_3121773_-|flagellum-specific-ATP-synthase-FliL
MTARLGRWIASLDDFESRMKGIPMVRRYGRLTKITGLVMEAEGIKMPLGATCFIERSINGGTDEVVCEVVGFSGPRMLLMPLADLEGISPGARVYAQSTGDDGQTSRLLPIGNELLGRVLDAQGTPLDGKGPLEVKTRAPLITPPINPLERTPISSVLDVGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARFTQADIIVVGLIGERGREVKDFIENILGTDGLKRAVVVAAPADVSPLLRMQGASYATRIAEYFRDQGLSVLLIMDSLTRYSMAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGKNGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRSLAESGHYPAIDIEASISRAMTELIPKEHYRKIQRFKQLTSSYQRNRDLINVGAYAMGSDPMLDTAIQYYPRMSKFLQQDIDERCDYQTACEQLQQVVPSE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP027418_4	4.1\|3945269\|21\|CP027418\|CRISPRCasFinder	3945269-3945289	21	CP027418.1	3766006-3766026	2	0.905

1. spacer 4.1|3945269|21|CP027418|CRISPRCasFinder matches to position: 3766006-3766026, mismatch: 2, identity: 0.905

ggtctgccatctggcggcata	CRISPR spacer
ggtgtgccatctggcgtcata	Protospacer
*** ************ ****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027418_3	3.8\|3113537\|32\|CP027418\|PILER-CR,CRISPRCasFinder,CRT	3113537-3113568	32	MK047640	Phage NV18, complete genome	6417-6448	0	1.0
CP027418_2	2.18\|3104332\|32\|CP027418\|CRISPRCasFinder,CRT	3104332-3104363	32	CP034667	Proteus vulgaris strain PvSC3 plasmid pPvSC3, complete sequence	55563-55594	1	0.969
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NC_007483	Nitrosococcus oceani ATCC 19707 plasmid A, complete sequence	2556-2586	2	0.935
CP027418_2	2.15\|3104151\|33\|CP027418\|CRISPRCasFinder,CRT	3104151-3104183	33	MW145137	Providencia phage PSTNGR2lys, complete genome	43709-43741	2	0.939
CP027418_2	2.18\|3104332\|32\|CP027418\|CRISPRCasFinder,CRT	3104332-3104363	32	NZ_CP028385	Providencia heimbachae strain 99101 plasmid unnamed, complete sequence	86802-86833	2	0.938
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NC_007483	Nitrosococcus oceani ATCC 19707 plasmid A, complete sequence	2555-2586	3	0.906
CP027418_2	2.19\|3104392\|32\|CP027418\|CRISPRCasFinder,CRT	3104392-3104423	32	MK047643	Phage NGI136, complete genome	1632-1663	3	0.906
CP027418_2	2.19\|3104392\|32\|CP027418\|CRISPRCasFinder,CRT	3104392-3104423	32	MW145137	Providencia phage PSTNGR2lys, complete genome	3896-3927	3	0.906
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	MK448900	Streptococcus phage Javan290, complete genome	1070-1100	5	0.839
CP027418_3	3.6\|3113417\|32\|CP027418\|PILER-CR,CRISPRCasFinder,CRT	3113417-3113448	32	MW057859	Providencia phage PSTCR8lys, complete genome	17507-17538	5	0.844
CP027418_2	2.2\|3103550\|31\|CP027418\|PILER-CR	3103550-3103580	31	AP013520	Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S39-C26	15923-15953	6	0.806
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	MK448900	Streptococcus phage Javan290, complete genome	1069-1100	6	0.812
CP027418_2	2.19\|3104392\|32\|CP027418\|CRISPRCasFinder,CRT	3104392-3104423	32	KY420199	Proteus phage vB_PvuS_Pm34, complete genome	15496-15527	6	0.812
CP027418_3	3.6\|3113417\|32\|CP027418\|PILER-CR,CRISPRCasFinder,CRT	3113417-3113448	32	MW145137	Providencia phage PSTNGR2lys, complete genome	24476-24507	6	0.812
CP027418_3	3.9\|3113597\|32\|CP027418\|PILER-CR,CRISPRCasFinder,CRT	3113597-3113628	32	NZ_CP050106	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence	527903-527934	6	0.812
CP027418_3	3.9\|3113597\|32\|CP027418\|PILER-CR,CRISPRCasFinder,CRT	3113597-3113628	32	NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	528087-528118	6	0.812
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NZ_CP009066	Borreliella afzelii K78 plasmid lp28-8, complete sequence	4689-4719	7	0.774
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NZ_CP018752	Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed5	639-669	7	0.774
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NZ_CP018752	Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed5	20082-20112	7	0.774
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NZ_CP026273	Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence	140860-140890	7	0.774
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NZ_CP028871	Borreliella garinii strain 20047 plasmid lp32-10, complete sequence	3099-3129	7	0.774
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NZ_CP028871	Borreliella garinii strain 20047 plasmid lp32-10, complete sequence	22553-22583	7	0.774
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NC_001856	Borreliella burgdorferi B31 plasmid lp38, complete sequence	30880-30910	7	0.774
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NZ_CP019853	Borreliella burgdorferi plasmid lp38, complete sequence	30893-30923	7	0.774
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NZ_CP019764	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp38, complete sequence	30886-30916	7	0.774
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NZ_CP015806	Borrelia mayonii strain MN14-1539 plasmid lp28-3	3784-3814	7	0.774
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NZ_CP015808	Borrelia mayonii strain MN14-1539 plasmid lp36	41225-41255	7	0.774
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NZ_CP015791	Borrelia mayonii strain MN14-1420 plasmid lp28-3, complete sequence	3784-3814	7	0.774
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NZ_CP015793	Borrelia mayonii strain MN14-1420 plasmid lp36, complete sequence	41225-41255	7	0.774
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NC_017240	Borreliella afzelii PKo plasmid lp32-10, complete sequence	25355-25385	7	0.774
CP027418_2	2.5\|3103549\|32\|CP027418\|CRISPRCasFinder,CRT	3103549-3103580	32	AP013520	Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S39-C26	15923-15954	7	0.781
CP027418_3	3.3\|3113237\|32\|CP027418\|PILER-CR,CRISPRCasFinder,CRT	3113237-3113268	32	AP013396	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C99-MedDCM-OCT-S44-C25	11624-11655	7	0.781
CP027418_3	3.3\|3113237\|32\|CP027418\|PILER-CR,CRISPRCasFinder,CRT	3113237-3113268	32	AP013648	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C99-MedDCM-OCT-S33-C45, * SEQUENCING IN PROGRESS *	27581-27612	7	0.781
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NC_011785	Borreliella burgdorferi ZS7 plasmid ZS7_lp28-4, complete sequence	25149-25179	8	0.742
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NC_018993	Borrelia burgdorferi 297 plasmid 297_lp28-4, complete sequence	24114-24144	8	0.742
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NC_017407	Borreliella burgdorferi JD1 plasmid JD1 lp28-4, complete sequence	26621-26651	8	0.742
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NC_017416	Borreliella burgdorferi N40 plasmid N40_lp28-4, complete sequence	25901-25931	8	0.742
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NZ_CP031403	Borreliella burgdorferi strain MM1 plasmid plsm_lp28-4, complete sequence	24136-24166	8	0.742
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NC_001854	Borreliella burgdorferi B31 plasmid lp28-4, complete sequence	25198-25228	8	0.742
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NZ_CP017217	Borreliella burgdorferi strain B331 plasmid B331_lp38, complete sequence	30956-30986	8	0.742
CP027418_2	2.2\|3103550\|31\|CP027418\|PILER-CR	3103550-3103580	31	AP019525	Tenacibaculum phage PTm5 DNA, complete genome	72647-72677	8	0.742
CP027418_2	2.2\|3103550\|31\|CP027418\|PILER-CR	3103550-3103580	31	AP019524	Tenacibaculum phage PTm1 DNA, complete genome	72656-72686	8	0.742
CP027418_2	2.2\|3103550\|31\|CP027418\|PILER-CR	3103550-3103580	31	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	321400-321430	8	0.742
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NZ_CP009066	Borreliella afzelii K78 plasmid lp28-8, complete sequence	4688-4719	8	0.75
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NZ_CP018752	Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed5	638-669	8	0.75
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NZ_CP018752	Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed5	20082-20113	8	0.75
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NZ_CP026273	Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence	140859-140890	8	0.75
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NZ_CP028871	Borreliella garinii strain 20047 plasmid lp32-10, complete sequence	3098-3129	8	0.75
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NZ_CP028871	Borreliella garinii strain 20047 plasmid lp32-10, complete sequence	22553-22584	8	0.75
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NC_001856	Borreliella burgdorferi B31 plasmid lp38, complete sequence	30879-30910	8	0.75
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NZ_CP019853	Borreliella burgdorferi plasmid lp38, complete sequence	30892-30923	8	0.75
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NZ_CP019764	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp38, complete sequence	30885-30916	8	0.75
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NZ_CP015806	Borrelia mayonii strain MN14-1539 plasmid lp28-3	3783-3814	8	0.75
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NZ_CP015808	Borrelia mayonii strain MN14-1539 plasmid lp36	41225-41256	8	0.75
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NZ_CP015791	Borrelia mayonii strain MN14-1420 plasmid lp28-3, complete sequence	3783-3814	8	0.75
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NZ_CP015793	Borrelia mayonii strain MN14-1420 plasmid lp36, complete sequence	41225-41256	8	0.75
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NC_017240	Borreliella afzelii PKo plasmid lp32-10, complete sequence	25355-25386	8	0.75
CP027418_2	2.5\|3103549\|32\|CP027418\|CRISPRCasFinder,CRT	3103549-3103580	32	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	321400-321431	8	0.75
CP027418_2	2.16\|3104212\|32\|CP027418\|CRISPRCasFinder,CRT	3104212-3104243	32	NZ_CP033045	Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence	205153-205184	8	0.75
CP027418_2	2.16\|3104212\|32\|CP027418\|CRISPRCasFinder,CRT	3104212-3104243	32	NZ_CP031170	Lactobacillus brevis strain UCCLBBS124 plasmid pUCCLBBS124_A, complete sequence	25667-25698	8	0.75
CP027418_2	2.16\|3104212\|32\|CP027418\|CRISPRCasFinder,CRT	3104212-3104243	32	NZ_CP017355	Lactobacillus plantarum strain TMW 1.25 plasmid pL125-1, complete sequence	45478-45509	8	0.75
CP027418_2	2.16\|3104212\|32\|CP027418\|CRISPRCasFinder,CRT	3104212-3104243	32	NZ_CP019735	Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-1, complete sequence	21784-21815	8	0.75
CP027418_2	2.16\|3104212\|32\|CP027418\|CRISPRCasFinder,CRT	3104212-3104243	32	NZ_CP017365	Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-2, complete sequence	15106-15137	8	0.75
CP027418_2	2.16\|3104212\|32\|CP027418\|CRISPRCasFinder,CRT	3104212-3104243	32	NZ_CP031199	Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_A, complete sequence	24065-24096	8	0.75
CP027418_2	2.16\|3104212\|32\|CP027418\|CRISPRCasFinder,CRT	3104212-3104243	32	NC_012551	Lactobacillus brevis plasmid pLB925A04, complete sequence	9095-9126	8	0.75
CP027418_2	2.16\|3104212\|32\|CP027418\|CRISPRCasFinder,CRT	3104212-3104243	32	NZ_CP019744	Lactobacillus brevis strain TMW 1.2111 plasmid pl12111-1, complete sequence	95580-95611	8	0.75
CP027418_3	3.3\|3113237\|32\|CP027418\|PILER-CR,CRISPRCasFinder,CRT	3113237-3113268	32	NZ_CP024012	Acinetobacter sp. LoGeW2-3 plasmid unnamed1, complete sequence	105889-105920	8	0.75
CP027418_2	2.1\|3103490\|31\|CP027418\|PILER-CR	3103490-3103520	31	NZ_CP044538	Borrelia sp. CA690 plasmid lp28-2, complete sequence	30280-30310	9	0.71
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NC_011785	Borreliella burgdorferi ZS7 plasmid ZS7_lp28-4, complete sequence	25148-25179	9	0.719
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NC_018993	Borrelia burgdorferi 297 plasmid 297_lp28-4, complete sequence	24113-24144	9	0.719
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NC_017407	Borreliella burgdorferi JD1 plasmid JD1 lp28-4, complete sequence	26620-26651	9	0.719
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NC_017416	Borreliella burgdorferi N40 plasmid N40_lp28-4, complete sequence	25900-25931	9	0.719
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NZ_CP031403	Borreliella burgdorferi strain MM1 plasmid plsm_lp28-4, complete sequence	24135-24166	9	0.719
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NC_001854	Borreliella burgdorferi B31 plasmid lp28-4, complete sequence	25197-25228	9	0.719
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NZ_CP017217	Borreliella burgdorferi strain B331 plasmid B331_lp38, complete sequence	30955-30986	9	0.719
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	MK560763	Virgibacillus phage Mimir87, complete genome	4939-4970	9	0.719
CP027418_2	2.9\|3103789\|33\|CP027418\|CRISPRCasFinder,CRT	3103789-3103821	33	MN693089	Marine virus AFVG_25M562, complete genome	16218-16250	9	0.727
CP027418_3	3.3\|3113237\|32\|CP027418\|PILER-CR,CRISPRCasFinder,CRT	3113237-3113268	32	NZ_KT020842	Clostridium perfringens strain JP838 plasmid pJP838B, complete sequence	4364-4395	9	0.719
CP027418_3	3.3\|3113237\|32\|CP027418\|PILER-CR,CRISPRCasFinder,CRT	3113237-3113268	32	MN855820	Bacteriophage sp. isolate 159, complete genome	2953-2984	9	0.719
CP027418_3	3.3\|3113237\|32\|CP027418\|PILER-CR,CRISPRCasFinder,CRT	3113237-3113268	32	NZ_CP013040	Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence	58490-58521	9	0.719
CP027418_3	3.3\|3113237\|32\|CP027418\|PILER-CR,CRISPRCasFinder,CRT	3113237-3113268	32	NZ_CP013041	Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence	41921-41952	9	0.719
CP027418_2	2.2\|3103550\|31\|CP027418\|PILER-CR	3103550-3103580	31	JQ287645	Sulfolobus virus STSV2, complete genome	53269-53299	10	0.677
CP027418_2	2.2\|3103550\|31\|CP027418\|PILER-CR	3103550-3103580	31	JQ287645	Sulfolobus virus STSV2, complete genome	53866-53896	10	0.677
CP027418_2	2.2\|3103550\|31\|CP027418\|PILER-CR	3103550-3103580	31	JQ287645	Sulfolobus virus STSV2, complete genome	54451-54481	10	0.677
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	NZ_CP044538	Borrelia sp. CA690 plasmid lp28-2, complete sequence	30279-30310	10	0.688
CP027418_2	2.4\|3103489\|32\|CP027418\|CRISPRCasFinder,CRT	3103489-3103520	32	CP040041	Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence	94934-94965	10	0.688
CP027418_2	2.18\|3104332\|32\|CP027418\|CRISPRCasFinder,CRT	3104332-3104363	32	NZ_AP014688	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence	81511-81542	10	0.688
CP027418_2	2.18\|3104332\|32\|CP027418\|CRISPRCasFinder,CRT	3104332-3104363	32	NZ_CP049702	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2c, complete sequence	55571-55602	10	0.688
CP027418_3	3.2\|3113177\|32\|CP027418\|PILER-CR,CRISPRCasFinder,CRT	3113177-3113208	32	NZ_CP023712	Rhodococcus ruber strain YC-YT1 plasmid unnamed1, complete sequence	92089-92120	10	0.688
CP027418_3	3.6\|3113417\|32\|CP027418\|PILER-CR,CRISPRCasFinder,CRT	3113417-3113448	32	NC_019538	Aeromonas phage CC2, complete genome	95050-95081	10	0.688
CP027418_3	3.11\|3113717\|33\|CP027418\|PILER-CR,CRISPRCasFinder,CRT	3113717-3113749	33	NZ_CP010885	Vibrio parahaemolyticus strain CHN25 plasmid P1, complete sequence	18154-18186	10	0.697
CP027418_3	3.11\|3113717\|33\|CP027418\|PILER-CR,CRISPRCasFinder,CRT	3113717-3113749	33	NZ_CP019298	Vibrio campbellii strain LMB29 plasmid pLMB96, complete sequence	13106-13138	10	0.697
CP027418_2	2.5\|3103549\|32\|CP027418\|CRISPRCasFinder,CRT	3103549-3103580	32	JQ287645	Sulfolobus virus STSV2, complete genome	53268-53299	11	0.656
CP027418_2	2.5\|3103549\|32\|CP027418\|CRISPRCasFinder,CRT	3103549-3103580	32	JQ287645	Sulfolobus virus STSV2, complete genome	53865-53896	11	0.656
CP027418_2	2.5\|3103549\|32\|CP027418\|CRISPRCasFinder,CRT	3103549-3103580	32	JQ287645	Sulfolobus virus STSV2, complete genome	54450-54481	11	0.656

1. spacer 3.8|3113537|32|CP027418|PILER-CR,CRISPRCasFinder,CRT matches to MK047640 (Phage NV18, complete genome) position: , mismatch: 0, identity: 1.0

agcccactcgtaaatgagctgtgtaattaact	CRISPR spacer
agcccactcgtaaatgagctgtgtaattaact	Protospacer
********************************

2. spacer 2.18|3104332|32|CP027418|CRISPRCasFinder,CRT matches to CP034667 (Proteus vulgaris strain PvSC3 plasmid pPvSC3, complete sequence) position: , mismatch: 1, identity: 0.969

tcatgctgatgaatgggatcaggatgttctct	CRISPR spacer
tcatgctgatgaatgggatcaggacgttctct	Protospacer
************************.*******

3. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NC_007483 (Nitrosococcus oceani ATCC 19707 plasmid A, complete sequence) position: , mismatch: 2, identity: 0.935

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttccattgctctcttcctcatct	Protospacer
****************** *.**********

4. spacer 2.15|3104151|33|CP027418|CRISPRCasFinder,CRT matches to MW145137 (Providencia phage PSTNGR2lys, complete genome) position: , mismatch: 2, identity: 0.939

atcgccgtgaaatcagactcagcgaatcgaatg	CRISPR spacer
atcgccgtgaaatcagactcagcaaatctaatg	Protospacer
***********************.**** ****

5. spacer 2.18|3104332|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP028385 (Providencia heimbachae strain 99101 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.938

tcatgctgatgaatgggatcaggatgttctct	CRISPR spacer
tcatgctgatgattgggatcaggatgtgctct	Protospacer
************ ************** ****

6. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NC_007483 (Nitrosococcus oceani ATCC 19707 plasmid A, complete sequence) position: , mismatch: 3, identity: 0.906

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgctctcttcctcatct	Protospacer
 ****************** *.**********

7. spacer 2.19|3104392|32|CP027418|CRISPRCasFinder,CRT matches to MK047643 (Phage NGI136, complete genome) position: , mismatch: 3, identity: 0.906

tcttcattgcatccctgcgagttaaattaatc	CRISPR spacer
tcttcattgcatccctgcgagttaaattatca	Protospacer
***************************** .

8. spacer 2.19|3104392|32|CP027418|CRISPRCasFinder,CRT matches to MW145137 (Providencia phage PSTNGR2lys, complete genome) position: , mismatch: 3, identity: 0.906

tcttcattgcatccctgcgagttaaattaatc	CRISPR spacer
tattcattgcatccctgcgaattaaattattc	Protospacer
* ******************.******** **

9. spacer 2.1|3103490|31|CP027418|PILER-CR matches to MK448900 (Streptococcus phage Javan290, complete genome) position: , mismatch: 5, identity: 0.839

aatttaatttccattgctgttttcctcatct	CRISPR spacer
gactttatttccattgcttttttcctcattt	Protospacer
.*.** ************ **********.*

10. spacer 3.6|3113417|32|CP027418|PILER-CR,CRISPRCasFinder,CRT matches to MW057859 (Providencia phage PSTCR8lys, complete genome) position: , mismatch: 5, identity: 0.844

ttactctgatgctacgttcgaaaaagcgtgga	CRISPR spacer
ctacagcgaggctacgttcgaaaaagcgtgga	Protospacer
.***  .** **********************

11. spacer 2.2|3103550|31|CP027418|PILER-CR matches to AP013520 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S39-C26) position: , mismatch: 6, identity: 0.806

-ttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
gctgac-tctttttcaaagtcaaaaacaacag	Protospacer
 .**** .********  *************.

12. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to MK448900 (Streptococcus phage Javan290, complete genome) position: , mismatch: 6, identity: 0.812

taatttaatttccattgctgttttcctcatct	CRISPR spacer
ggactttatttccattgcttttttcctcattt	Protospacer
 .*.** ************ **********.*

13. spacer 2.19|3104392|32|CP027418|CRISPRCasFinder,CRT matches to KY420199 (Proteus phage vB_PvuS_Pm34, complete genome) position: , mismatch: 6, identity: 0.812

tcttcattgcatccctgcgagttaaattaatc	CRISPR spacer
tcttcattgcatccctgcgagttacacttgat	Protospacer
************************ *.* . .

14. spacer 3.6|3113417|32|CP027418|PILER-CR,CRISPRCasFinder,CRT matches to MW145137 (Providencia phage PSTNGR2lys, complete genome) position: , mismatch: 6, identity: 0.812

ttactctgatgctacgttcgaaaaagcgtgga	CRISPR spacer
gtatgatgaggctacgttcgaaaaagcgtggg	Protospacer
 **.  *** *********************.

15. spacer 3.9|3113597|32|CP027418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 6, identity: 0.812

agcgaatatcaacgcacccaccg----tgtcgattt	CRISPR spacer
agcgaatatccacgcacccatcgacaatgtcg----	Protospacer
********** *********.**    *****

16. spacer 3.9|3113597|32|CP027418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 6, identity: 0.812

agcgaatatcaacgcacccaccg----tgtcgattt	CRISPR spacer
agcgaatatccacgcacccatcgacaatgtcg----	Protospacer
********** *********.**    *****

17. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NZ_CP009066 (Borreliella afzelii K78 plasmid lp28-8, complete sequence) position: , mismatch: 7, identity: 0.774

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttccattgatgtttttagcgtga	Protospacer
**************** ******.  *.*

18. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NZ_CP018752 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed5) position: , mismatch: 7, identity: 0.774

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttccattgatgtttttagcgtga	Protospacer
**************** ******.  *.*

19. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NZ_CP018752 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed5) position: , mismatch: 7, identity: 0.774

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttccattgatgtttttagcgtga	Protospacer
**************** ******.  *.*

20. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NZ_CP026273 (Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence) position: , mismatch: 7, identity: 0.774

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttcatttccattgctgtttttgttgtta	Protospacer
***** *****************. *..*.

21. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NZ_CP028871 (Borreliella garinii strain 20047 plasmid lp32-10, complete sequence) position: , mismatch: 7, identity: 0.774

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttccattgatgtttttagcgtga	Protospacer
**************** ******.  *.*

22. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NZ_CP028871 (Borreliella garinii strain 20047 plasmid lp32-10, complete sequence) position: , mismatch: 7, identity: 0.774

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttccattgatgtttttagcgtga	Protospacer
**************** ******.  *.*

23. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NC_001856 (Borreliella burgdorferi B31 plasmid lp38, complete sequence) position: , mismatch: 7, identity: 0.774

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttccattgatgtttttagcgtaa	Protospacer
**************** ******.  *.*

24. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NZ_CP019853 (Borreliella burgdorferi plasmid lp38, complete sequence) position: , mismatch: 7, identity: 0.774

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttccattgatgtttttagcgtaa	Protospacer
**************** ******.  *.*

25. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NZ_CP019764 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp38, complete sequence) position: , mismatch: 7, identity: 0.774

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttccattgatgtttttagcgtaa	Protospacer
**************** ******.  *.*

26. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NZ_CP015806 (Borrelia mayonii strain MN14-1539 plasmid lp28-3) position: , mismatch: 7, identity: 0.774

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttccattgatgtttttagcgtga	Protospacer
**************** ******.  *.*

27. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NZ_CP015808 (Borrelia mayonii strain MN14-1539 plasmid lp36) position: , mismatch: 7, identity: 0.774

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttccattgatgtttttagcgtga	Protospacer
**************** ******.  *.*

28. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NZ_CP015791 (Borrelia mayonii strain MN14-1420 plasmid lp28-3, complete sequence) position: , mismatch: 7, identity: 0.774

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttccattgatgtttttagcgtga	Protospacer
**************** ******.  *.*

29. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NZ_CP015793 (Borrelia mayonii strain MN14-1420 plasmid lp36, complete sequence) position: , mismatch: 7, identity: 0.774

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttccattgatgtttttagcgtga	Protospacer
**************** ******.  *.*

30. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NC_017240 (Borreliella afzelii PKo plasmid lp32-10, complete sequence) position: , mismatch: 7, identity: 0.774

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttccattgatgtttttagcgtga	Protospacer
**************** ******.  *.*

31. spacer 2.5|3103549|32|CP027418|CRISPRCasFinder,CRT matches to AP013520 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S39-C26) position: , mismatch: 7, identity: 0.781

-tttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
tgctgac-tctttttcaaagtcaaaaacaacag	Protospacer
  .**** .********  *************.

32. spacer 3.3|3113237|32|CP027418|PILER-CR,CRISPRCasFinder,CRT matches to AP013396 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C99-MedDCM-OCT-S44-C25) position: , mismatch: 7, identity: 0.781

tcaataaatgttgctgatacagaataaacacc	CRISPR spacer
gcaccaaatgttgctggtacagaataaccaaa	Protospacer
 ** .***********.********** **

33. spacer 3.3|3113237|32|CP027418|PILER-CR,CRISPRCasFinder,CRT matches to AP013648 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C99-MedDCM-OCT-S33-C45, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

tcaataaatgttgctgatacagaataaacacc	CRISPR spacer
gcaccaaatgttgctggtacagaataaccaaa	Protospacer
 ** .***********.********** **

34. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NC_011785 (Borreliella burgdorferi ZS7 plasmid ZS7_lp28-4, complete sequence) position: , mismatch: 8, identity: 0.742

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttctattgatgtttttagcgtgg	Protospacer
***********.**** ******.  *.*

35. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NC_018993 (Borrelia burgdorferi 297 plasmid 297_lp28-4, complete sequence) position: , mismatch: 8, identity: 0.742

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttctattgatgtttttagcgtgg	Protospacer
***********.**** ******.  *.*

36. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NC_017407 (Borreliella burgdorferi JD1 plasmid JD1 lp28-4, complete sequence) position: , mismatch: 8, identity: 0.742

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttctattgatgtttttagcgtgg	Protospacer
***********.**** ******.  *.*

37. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NC_017416 (Borreliella burgdorferi N40 plasmid N40_lp28-4, complete sequence) position: , mismatch: 8, identity: 0.742

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttctattgatgtttttagcgtgg	Protospacer
***********.**** ******.  *.*

38. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NZ_CP031403 (Borreliella burgdorferi strain MM1 plasmid plsm_lp28-4, complete sequence) position: , mismatch: 8, identity: 0.742

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttctattgatgtttttagcgtgg	Protospacer
***********.**** ******.  *.*

39. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NC_001854 (Borreliella burgdorferi B31 plasmid lp28-4, complete sequence) position: , mismatch: 8, identity: 0.742

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttctattgatgtttttagcgtgg	Protospacer
***********.**** ******.  *.*

40. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NZ_CP017217 (Borreliella burgdorferi strain B331 plasmid B331_lp38, complete sequence) position: , mismatch: 8, identity: 0.742

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaattcccattgatgtttttagcgtaa	Protospacer
*********.****** ******.  *.*

41. spacer 2.2|3103550|31|CP027418|PILER-CR matches to AP019525 (Tenacibaculum phage PTm5 DNA, complete genome) position: , mismatch: 8, identity: 0.742

ttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
aagtcttgtttttcaccatcaaaaacaacag	Protospacer
  * * . *********.************.

42. spacer 2.2|3103550|31|CP027418|PILER-CR matches to AP019524 (Tenacibaculum phage PTm1 DNA, complete genome) position: , mismatch: 8, identity: 0.742

ttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
aagtcttgtttttcaccatcaaaaacaacag	Protospacer
  * * . *********.************.

43. spacer 2.2|3103550|31|CP027418|PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 8, identity: 0.742

ttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
cttgctgttttttcatcttcaaaaacaacaa	Protospacer
.* .*  .*******.* *************

44. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP009066 (Borreliella afzelii K78 plasmid lp28-8, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

45. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP018752 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed5) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

46. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP018752 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed5) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

47. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP026273 (Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
caatttcatttccattgctgtttttgttgtta	Protospacer
.***** *****************. *..*.

48. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP028871 (Borreliella garinii strain 20047 plasmid lp32-10, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

49. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP028871 (Borreliella garinii strain 20047 plasmid lp32-10, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

50. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NC_001856 (Borreliella burgdorferi B31 plasmid lp38, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
gaatttaatttccattgatgtttttagcgtaa	Protospacer
 **************** ******.  *.*

51. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP019853 (Borreliella burgdorferi plasmid lp38, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
gaatttaatttccattgatgtttttagcgtaa	Protospacer
 **************** ******.  *.*

52. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP019764 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp38, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
gaatttaatttccattgatgtttttagcgtaa	Protospacer
 **************** ******.  *.*

53. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP015806 (Borrelia mayonii strain MN14-1539 plasmid lp28-3) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

54. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP015808 (Borrelia mayonii strain MN14-1539 plasmid lp36) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

55. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP015791 (Borrelia mayonii strain MN14-1420 plasmid lp28-3, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

56. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP015793 (Borrelia mayonii strain MN14-1420 plasmid lp36, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

57. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NC_017240 (Borreliella afzelii PKo plasmid lp32-10, complete sequence) position: , mismatch: 8, identity: 0.75

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttccattgatgtttttagcgtga	Protospacer
 **************** ******.  *.*

58. spacer 2.5|3103549|32|CP027418|CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 8, identity: 0.75

tttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
tcttgctgttttttcatcttcaaaaacaacaa	Protospacer
*.* .*  .*******.* *************

59. spacer 2.16|3104212|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cgaagtggaaaagaaaagagcaactattgatt	CRISPR spacer
catgacggaaaagaaaagaacaactattgtat	Protospacer
*. ...*************.*********  *

60. spacer 2.16|3104212|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP031170 (Lactobacillus brevis strain UCCLBBS124 plasmid pUCCLBBS124_A, complete sequence) position: , mismatch: 8, identity: 0.75

cgaagt--ggaaaagaaaagagcaactattgatt	CRISPR spacer
--aatttaagaaaagaaataagcaactattgacg	Protospacer
  ** *  .********* .************.

61. spacer 2.16|3104212|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP017355 (Lactobacillus plantarum strain TMW 1.25 plasmid pL125-1, complete sequence) position: , mismatch: 8, identity: 0.75

cgaagt--ggaaaagaaaagagcaactattgatt	CRISPR spacer
--aatttaagaaaagaaataagcaactattgacg	Protospacer
  ** *  .********* .************.

62. spacer 2.16|3104212|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP019735 (Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-1, complete sequence) position: , mismatch: 8, identity: 0.75

cgaagt--ggaaaagaaaagagcaactattgatt	CRISPR spacer
--aatttaagaaaagaaataagcaactattgacg	Protospacer
  ** *  .********* .************.

63. spacer 2.16|3104212|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP017365 (Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-2, complete sequence) position: , mismatch: 8, identity: 0.75

cgaagt--ggaaaagaaaagagcaactattgatt	CRISPR spacer
--aatttaagaaaagaaataagcaactattgacg	Protospacer
  ** *  .********* .************.

64. spacer 2.16|3104212|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP031199 (Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_A, complete sequence) position: , mismatch: 8, identity: 0.75

cgaagt--ggaaaagaaaagagcaactattgatt	CRISPR spacer
--aatttaagaaaagaaataagcaactattgacg	Protospacer
  ** *  .********* .************.

65. spacer 2.16|3104212|32|CP027418|CRISPRCasFinder,CRT matches to NC_012551 (Lactobacillus brevis plasmid pLB925A04, complete sequence) position: , mismatch: 8, identity: 0.75

cgaagt--ggaaaagaaaagagcaactattgatt	CRISPR spacer
--aatttaagaaaagaaataagcaactattgacg	Protospacer
  ** *  .********* .************.

66. spacer 2.16|3104212|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP019744 (Lactobacillus brevis strain TMW 1.2111 plasmid pl12111-1, complete sequence) position: , mismatch: 8, identity: 0.75

cgaagt--ggaaaagaaaagagcaactattgatt	CRISPR spacer
--aatttaagaaaagaaataagcaactattgacg	Protospacer
  ** *  .********* .************.

67. spacer 3.3|3113237|32|CP027418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024012 (Acinetobacter sp. LoGeW2-3 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tcaataaatgttgctgatacaga-----ataaacacc	CRISPR spacer
tccataaaagttgctgatacagatccgtatag-----	Protospacer
** ***** **************     ***.

68. spacer 2.1|3103490|31|CP027418|PILER-CR matches to NZ_CP044538 (Borrelia sp. CA690 plasmid lp28-2, complete sequence) position: , mismatch: 9, identity: 0.71

aatttaatttccattgctgttttcctcatct	CRISPR spacer
aatttaatttctattgatgtttttagtttgg	Protospacer
***********.**** ******.  . *

69. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NC_011785 (Borreliella burgdorferi ZS7 plasmid ZS7_lp28-4, complete sequence) position: , mismatch: 9, identity: 0.719

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttctattgatgtttttagcgtgg	Protospacer
 ***********.**** ******.  *.*

70. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NC_018993 (Borrelia burgdorferi 297 plasmid 297_lp28-4, complete sequence) position: , mismatch: 9, identity: 0.719

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttctattgatgtttttagcgtgg	Protospacer
 ***********.**** ******.  *.*

71. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NC_017407 (Borreliella burgdorferi JD1 plasmid JD1 lp28-4, complete sequence) position: , mismatch: 9, identity: 0.719

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttctattgatgtttttagcgtgg	Protospacer
 ***********.**** ******.  *.*

72. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NC_017416 (Borreliella burgdorferi N40 plasmid N40_lp28-4, complete sequence) position: , mismatch: 9, identity: 0.719

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttctattgatgtttttagcgtgg	Protospacer
 ***********.**** ******.  *.*

73. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP031403 (Borreliella burgdorferi strain MM1 plasmid plsm_lp28-4, complete sequence) position: , mismatch: 9, identity: 0.719

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttctattgatgtttttagcgtgg	Protospacer
 ***********.**** ******.  *.*

74. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NC_001854 (Borreliella burgdorferi B31 plasmid lp28-4, complete sequence) position: , mismatch: 9, identity: 0.719

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttctattgatgtttttagcgtgg	Protospacer
 ***********.**** ******.  *.*

75. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP017217 (Borreliella burgdorferi strain B331 plasmid B331_lp38, complete sequence) position: , mismatch: 9, identity: 0.719

taatttaatttccattgctgttttcctcatct	CRISPR spacer
gaatttaattcccattgatgtttttagcgtaa	Protospacer
 *********.****** ******.  *.*

76. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to MK560763 (Virgibacillus phage Mimir87, complete genome) position: , mismatch: 9, identity: 0.719

taatttaatttccattgctgttttcctcatct	CRISPR spacer
taatttaatttcttttgctgtttcctcgtcat	Protospacer
************. *********.*..  . *

77. spacer 2.9|3103789|33|CP027418|CRISPRCasFinder,CRT matches to MN693089 (Marine virus AFVG_25M562, complete genome) position: , mismatch: 9, identity: 0.727

tgtttctaagtaccgaacaagagaaaactttgt	CRISPR spacer
tgtttttaagtaacgaacaagagatgctagttt	Protospacer
*****.****** *********** . .  * *

78. spacer 3.3|3113237|32|CP027418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT020842 (Clostridium perfringens strain JP838 plasmid pJP838B, complete sequence) position: , mismatch: 9, identity: 0.719

tcaataaatgttgctgatacagaataaacacc	CRISPR spacer
tcaataaatgatgctgatatagaagtttttac	Protospacer
********** ********.****    .  *

79. spacer 3.3|3113237|32|CP027418|PILER-CR,CRISPRCasFinder,CRT matches to MN855820 (Bacteriophage sp. isolate 159, complete genome) position: , mismatch: 9, identity: 0.719

tcaataaatgttgctgatacagaataaacacc	CRISPR spacer
tcaataaatgttagtgatacagaagctctttc	Protospacer
************. **********    . .*

80. spacer 3.3|3113237|32|CP027418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013040 (Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence) position: , mismatch: 9, identity: 0.719

tcaataaatgttgctgatacaga-------ataaacacc	CRISPR spacer
tcaataaatgatgctgataaagatgtctttat-------	Protospacer
********** ******** ***       **

81. spacer 3.3|3113237|32|CP027418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013041 (Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence) position: , mismatch: 9, identity: 0.719

tcaataaatgttgctgatacaga-------ataaacacc	CRISPR spacer
tcaataaatgatgctgataaagatgtctttat-------	Protospacer
********** ******** ***       **

82. spacer 2.2|3103550|31|CP027418|PILER-CR matches to JQ287645 (Sulfolobus virus STSV2, complete genome) position: , mismatch: 10, identity: 0.677

ttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
ggatgggctttttcaccttcaacaacaacac	Protospacer
  .  . ********** **** *******

83. spacer 2.2|3103550|31|CP027418|PILER-CR matches to JQ287645 (Sulfolobus virus STSV2, complete genome) position: , mismatch: 10, identity: 0.677

ttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
ggatgggctttttcaccttcaacaacaacac	Protospacer
  .  . ********** **** *******

84. spacer 2.2|3103550|31|CP027418|PILER-CR matches to JQ287645 (Sulfolobus virus STSV2, complete genome) position: , mismatch: 10, identity: 0.677

ttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
ggatgggctttttcaccttcaacaacaacac	Protospacer
  .  . ********** **** *******

85. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP044538 (Borrelia sp. CA690 plasmid lp28-2, complete sequence) position: , mismatch: 10, identity: 0.688

taatttaatttccattgctgttttcctcatct	CRISPR spacer
aaatttaatttctattgatgtttttagtttgg	Protospacer
 ***********.**** ******.  . *

86. spacer 2.4|3103489|32|CP027418|CRISPRCasFinder,CRT matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

taatttaatttccattgctgttttcctcatct	CRISPR spacer
taatttactttccaatgctgtttatggcgctg	Protospacer
******* ****** ******** .  *...

87. spacer 2.18|3104332|32|CP027418|CRISPRCasFinder,CRT matches to NZ_AP014688 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence) position: , mismatch: 10, identity: 0.688

tcatgctgatgaatgggatcaggatgttctct	CRISPR spacer
atatgctgacgaatgggatcaggctgaagcgg	Protospacer
 .*******.************* **   .

88. spacer 2.18|3104332|32|CP027418|CRISPRCasFinder,CRT matches to NZ_CP049702 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2c, complete sequence) position: , mismatch: 10, identity: 0.688

tcatgctgatgaatgggatcaggatgttctct	CRISPR spacer
atatgctgacgaatgggatcaggctgaagcgg	Protospacer
 .*******.************* **   .

89. spacer 3.2|3113177|32|CP027418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023712 (Rhodococcus ruber strain YC-YT1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tgacttagttgacgcagagcgggggtatcgca	CRISPR spacer
tcgagctgttcccgcagagcgggggtatcggc	Protospacer
* .  . ***  ******************

90. spacer 3.6|3113417|32|CP027418|PILER-CR,CRISPRCasFinder,CRT matches to NC_019538 (Aeromonas phage CC2, complete genome) position: , mismatch: 10, identity: 0.688

ttactctgatgctacgttcgaaaaagcgtgga	CRISPR spacer
agactatgatgatacgttcgaaaaacagaacc	Protospacer
  *** ***** *************  * .

91. spacer 3.11|3113717|33|CP027418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010885 (Vibrio parahaemolyticus strain CHN25 plasmid P1, complete sequence) position: , mismatch: 10, identity: 0.697

cgatgattcaacaccaacaagcgcatgtaacgt	CRISPR spacer
atgagattcaacatcaacaagcgcaggttgact	Protospacer
  . *********.*********** ** .  *

92. spacer 3.11|3113717|33|CP027418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019298 (Vibrio campbellii strain LMB29 plasmid pLMB96, complete sequence) position: , mismatch: 10, identity: 0.697

cgatgattcaacaccaacaagcgcatgtaacgt	CRISPR spacer
atgagattcaacatcaacaagcgcaggttgact	Protospacer
  . *********.*********** ** .  *

93. spacer 2.5|3103549|32|CP027418|CRISPRCasFinder,CRT matches to JQ287645 (Sulfolobus virus STSV2, complete genome) position: , mismatch: 11, identity: 0.656

tttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
aggatgggctttttcaccttcaacaacaacac	Protospacer
   .  . ********** **** *******

94. spacer 2.5|3103549|32|CP027418|CRISPRCasFinder,CRT matches to JQ287645 (Sulfolobus virus STSV2, complete genome) position: , mismatch: 11, identity: 0.656

tttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
aggatgggctttttcaccttcaacaacaacac	Protospacer
   .  . ********** **** *******

95. spacer 2.5|3103549|32|CP027418|CRISPRCasFinder,CRT matches to JQ287645 (Sulfolobus virus STSV2, complete genome) position: , mismatch: 11, identity: 0.656

tttgacacctttttcaccgtcaaaaacaacaa	CRISPR spacer
aggatgggctttttcaccttcaacaacaacac	Protospacer
   .  . ********** **** *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1973893 : 1982338

Escherichia_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL73851.1\|1973893_1976314_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	4.8e-139	37.9
AVL73852.1\|1976310_1976949_+	dimethylsulfoxide reductase, chain B	A0A077SL61	Escherichia_phage	1.9e-63	55.8
AVL73853.1\|1976945_1977845_+	reductase	NA	NA	NA	NA
AVL73854.1\|1977882_1978449_+	DmsD	A0A077SLS7	Escherichia_phage	2.7e-16	31.3
AVL73855.1\|1978674_1979097_+	DoxX family protein	NA	NA	NA	NA
AVL73856.1\|1979184_1979979_-	nucleotidyltransferase domain-containing protein	A0A2D1GQQ2	Pseudomonas_phage	3.0e-42	41.7
AVL73857.1\|1979990_1981217_-	RtcB family protein	A0A1V0EEW8	Caulobacter_phage	9.5e-136	62.9
AVL73858.1\|1981219_1982338_-	slipin family protein	A0A2P1EMF1	Moumouvirus	1.3e-14	28.1

DBSCAN-SWA_2

2546069 : 2556668

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL74306.1\|2546069_2547269_-	proline/glycine betaine ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	4.5e-29	38.5
AVL74307.1\|2547996_2548968_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	1.3e-132	72.2
AVL74308.1\|2548982_2551115_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.4e-206	51.6
AVL74309.1\|2551127_2551541_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	2.9e-12	33.6
AVL74310.1\|2551549_2551777_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.4e-16	56.2
AVL74311.1\|2552064_2552523_+	cysteine methyltransferase	A0A2K9L300	Tupanvirus	6.0e-19	46.6
AVL74312.1\|2552740_2552950_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	7.7e-22	79.7
AVL74313.1\|2553106_2554072_-	lipoyl synthase	NA	NA	NA	NA
AVL74314.1\|2554196_2554826_-	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
AVL74315.1\|2555057_2555321_-	hypothetical protein	NA	NA	NA	NA
AVL74316.1\|2555456_2556668_-	serine-type D-Ala-D-Ala carboxypeptidase	B6DZZ7	Stx2-converting_phage	5.9e-106	49.9

DBSCAN-SWA_3

2907898 : 2919363

Morganella_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL74587.1\|2907898_2909110_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	3.7e-132	57.8
AVL74588.1\|2909323_2910256_+	hypothetical protein	NA	NA	NA	NA
AVL76165.1\|2910413_2910629_+	dipicolinate synthase	A0A2H4J8C8	uncultured_Caudovirales_phage	7.2e-07	43.4
AVL74589.1\|2910628_2911024_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	3.8e-30	59.6
AVL74590.1\|2911036_2911633_+	antirepressor protein	A0A1W6JPH8	Morganella_phage	2.3e-74	71.2
AVL74591.1\|2912294_2912477_-	DUF3950 domain-containing protein	NA	NA	NA	NA
AVL76166.1\|2912619_2912844_+	host cell division inhibitor Icd-like protein	A0A1W6JPK3	Morganella_phage	5.2e-08	49.2
AVL74592.1\|2912836_2913010_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AVL74593.1\|2913012_2913204_+	hypothetical protein	A0A1W6JPD9	Morganella_phage	3.6e-10	55.6
AVL74594.1\|2913358_2913538_+	hypothetical protein	NA	NA	NA	NA
AVL74595.1\|2913534_2913744_+	hypothetical protein	A0A1W6JPF1	Morganella_phage	1.4e-10	49.3
AVL74596.1\|2913740_2914325_+	toxin Bro	A0A1B5FPC0	Escherichia_phage	3.1e-28	58.0
AVL74597.1\|2914494_2914689_+	hypothetical protein	NA	NA	NA	NA
AVL74598.1\|2914688_2914910_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	8.8e-08	39.2
AVL74599.1\|2914906_2915503_+	hypothetical protein	NA	NA	NA	NA
AVL74600.1\|2915517_2915862_+	hypothetical protein	A0A1W6JPD8	Morganella_phage	4.4e-46	75.4
AVL74601.1\|2915858_2918606_+	DNA primase	A0A1W6JPG0	Morganella_phage	3.8e-233	47.8
AVL74602.1\|2918925_2919363_+	osmoprotectant transporter ProQ	A0A1W6JPI6	Morganella_phage	2.4e-17	66.7

DBSCAN-SWA_4

2992539 : 3023084

Salmonella_phage(33.33%)

head,tail,lysis,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL76174.1\|2992539_2993205_-	LexA family transcriptional repressor	U5P0T5	Shigella_phage	7.1e-77	60.6
AVL74676.1\|2993295_2993532_+	transcriptional regulator	NA	NA	NA	NA
AVL74677.1\|2993524_2993779_+	hypothetical protein	A0A286S2B5	Klebsiella_phage	5.3e-17	51.9
AVL74678.1\|2994037_2995606_+	helicase	A0A286N2P9	Klebsiella_phage	1.6e-215	69.2
AVL74679.1\|2995602_2996583_+	DNA primase	A0A286N2Q0	Klebsiella_phage	8.2e-106	55.9
AVL74680.1\|2996582_2996966_+	antitermination protein	A0A088CD47	Shigella_phage	1.3e-46	68.3
AVL74681.1\|2997071_2997461_-	hypothetical protein	NA	NA	NA	NA
AVL74682.1\|2997457_2997700_-	hypothetical protein	NA	NA	NA	NA
AVL74683.1\|2997724_2998627_-	hypothetical protein	NA	NA	NA	NA
AVL74684.1\|2998791_2999061_+	hypothetical protein	A0A2H4FNF0	Salmonella_phage	1.1e-25	67.8
AVL74685.1\|2999060_2999531_+	lysozyme	A0A1W6JNW4	Morganella_phage	2.4e-47	56.6
AVL74686.1\|2999706_3000162_+\|lysis	lysis protein	A0A1P8DTG0	Proteus_phage	4.9e-21	44.4
AVL74687.1\|3000158_3000575_-	hypothetical protein	NA	NA	NA	NA
AVL74688.1\|3000660_3001401_+	hypothetical protein	NA	NA	NA	NA
AVL76175.1\|3001400_3002711_+\|terminase	PBSX family phage terminase large subunit	A0A2H4JCM3	uncultured_Caudovirales_phage	2.0e-144	60.6
AVL74689.1\|3002927_3004385_+	hypothetical protein	A0A0M4S6U1	Salmonella_phage	2.3e-144	52.4
AVL76176.1\|3004467_3005001_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	1.2e-45	54.7
AVL74690.1\|3005051_3006326_+	hypothetical protein	A0A0M4R5A6	Salmonella_phage	5.7e-75	45.2
AVL74691.1\|3006336_3006840_+	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	2.2e-30	47.6
AVL74692.1\|3006850_3007798_+	hypothetical protein	A0A0M3ULD3	Salmonella_phage	4.1e-102	56.7
AVL74693.1\|3007837_3008212_+	hypothetical protein	NA	NA	NA	NA
AVL74694.1\|3008180_3008591_+	DUF4054 domain-containing protein	A0A2H4J1A6	uncultured_Caudovirales_phage	4.7e-31	54.1
AVL74695.1\|3008587_3009097_+	hypothetical protein	A9YX26	Burkholderia_phage	7.9e-20	36.3
AVL74696.1\|3009096_3009483_+\|head,tail	head-tail adaptor	A0A2H4J1A4	uncultured_Caudovirales_phage	9.2e-45	71.8
AVL74697.1\|3009475_3010021_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	5.5e-59	59.7
AVL74698.1\|3010024_3011488_+	hypothetical protein	A0A0P0I492	Acinetobacter_phage	9.3e-130	51.0
AVL74699.1\|3011495_3011939_+	DUF3277 domain-containing protein	A0A0M5M1K6	Salmonella_phage	6.0e-48	65.0
AVL74700.1\|3011938_3012340_+	hypothetical protein	NA	NA	NA	NA
AVL74701.1\|3012523_3014803_+	hypothetical protein	A0A0M4REK7	Salmonella_phage	4.9e-101	51.3
AVL74702.1\|3014802_3015399_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	1.2e-46	53.6
AVL74703.1\|3015408_3015723_+	hypothetical protein	NA	NA	NA	NA
AVL74704.1\|3015788_3016394_+	hypothetical protein	NA	NA	NA	NA
AVL74705.1\|3016503_3017454_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	4.4e-64	37.5
AVL76177.1\|3017501_3018203_+	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	2.6e-77	65.1
AVL74706.1\|3018202_3018547_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.7e-24	52.6
AVL74707.1\|3018546_3019734_+	hypothetical protein	A0A2H4J5T1	uncultured_Caudovirales_phage	2.0e-106	50.4
AVL74708.1\|3019730_3020387_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	3.9e-51	45.4
AVL76178.1\|3021205_3021904_+	hypothetical protein	A0A219YBC2	Aeromonas_phage	3.0e-33	53.7
AVL74709.1\|3021903_3022521_+\|tail	phage tail protein	Q9MCR5	Enterobacteria_phage	5.3e-34	39.9
AVL74710.1\|3022679_3023084_-	acyl-CoA thioesterase	A0A292GK23	Xanthomonas_phage	2.0e-10	38.6

DBSCAN-SWA_5

3281803 : 3289256

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL74946.1\|3281803_3282100_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.2e-13	40.0
AVL74947.1\|3282176_3283115_-	hypothetical protein	NA	NA	NA	NA
AVL74948.1\|3283230_3284232_+	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	6.2e-16	25.4
AVL74949.1\|3284237_3285005_+	vitamin B12 ABC transporter ATP-binding protein BtuD	F2Y302	Organic_Lake_phycodnavirus	3.4e-06	28.4
AVL74950.1\|3285133_3286279_+	UDP-4-amino-4-deoxy-L-arabinose aminotransferase	A0A2K9L470	Tupanvirus	8.0e-36	27.4
AVL74951.1\|3286278_3287271_+	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	A8CG95	Salmonella_phage	4.3e-38	33.4
AVL74952.1\|3287270_3289256_+	bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	A0A2K9KZK0	Tupanvirus	1.9e-21	26.3

DBSCAN-SWA_6

3911845 : 3955389

Pectobacterium_phage(18.6%)

tail,integrase,portal,head,tRNA,lysis,terminase

attL 3931546:3931560|attR 3955550:3955564

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL75493.1\|3911845_3911998_-	hypothetical protein	Q77Z09	Phage_21	8.4e-18	88.0
AVL75494.1\|3912229_3912475_+	DinI family protein	NA	NA	NA	NA
AVL75495.1\|3912471_3912750_+	hypothetical protein	NA	NA	NA	NA
AVL75496.1\|3913039_3913813_+	lipooligosaccharide biosynthesis protein LpsA	NA	NA	NA	NA
AVL75497.1\|3913962_3915486_-\|tail	phage tail protein	A0A0F6R6B6	Escherichia_coli_O157_typing_phage	5.5e-40	43.6
AVL75498.1\|3915491_3916151_-	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	5.6e-42	41.7
AVL75499.1\|3916147_3917335_-	hypothetical protein	A0A2H5BG53	Pseudoalteromonas_phage	1.1e-75	38.7
AVL75500.1\|3917327_3917672_-	hypothetical protein	Q6IWQ2	Burkholderia_phage	4.9e-13	36.6
AVL75501.1\|3917668_3918361_-	hypothetical protein	A0A2H4P6V3	Pseudomonas_phage	1.0e-30	41.3
AVL75502.1\|3918364_3919180_-	hypothetical protein	B5M9T8	Pseudomonas_phage	9.8e-20	29.2
AVL75503.1\|3919172_3919466_-	hypothetical protein	NA	NA	NA	NA
AVL75504.1\|3919469_3919997_-	hypothetical protein	NA	NA	NA	NA
AVL76212.1\|3919993_3922120_-	hypothetical protein	A0A2H5BG44	Pseudoalteromonas_phage	3.6e-21	28.4
AVL75505.1\|3922586_3923045_-	hypothetical protein	Q6IWV4	Burkholderia_phage	2.8e-24	49.2
AVL75506.1\|3923096_3923549_-	hypothetical protein	I7ATP4	Escherichia_phage	1.4e-23	39.6
AVL75507.1\|3923558_3925046_-	DUF3383 domain-containing protein	A0A088C3U1	Shewanella_sp._phage	2.4e-80	37.2
AVL75508.1\|3925056_3925572_-	hypothetical protein	NA	NA	NA	NA
AVL75509.1\|3925561_3925930_-	hypothetical protein	NA	NA	NA	NA
AVL75510.1\|3925929_3926388_-	hypothetical protein	Q6IWU9	Burkholderia_phage	4.5e-14	39.8
AVL76213.1\|3926387_3926819_-	DUF4054 domain-containing protein	Q6IWU8	Burkholderia_phage	5.2e-12	34.5
AVL75511.1\|3926821_3927163_-	hypothetical protein	Q6IWU7	Burkholderia_phage	1.0e-07	34.5
AVL75512.1\|3927219_3928287_-	hypothetical protein	A0A088C493	Shewanella_sp._phage	7.4e-52	36.3
AVL75513.1\|3928286_3928784_-	hypothetical protein	NA	NA	NA	NA
AVL75514.1\|3928783_3930040_-	hypothetical protein	A0A2H5BG39	Pseudoalteromonas_phage	3.0e-36	44.6
AVL75515.1\|3930036_3930750_-\|head	phage head morphogenesis protein	Q6IWU3	Burkholderia_phage	3.7e-39	39.0
AVL75516.1\|3930787_3932290_-\|portal	portal protein	A0A2H4P6S9	Pseudomonas_phage	3.1e-104	43.4
3931546:3931560	attL	NA	NA	NA	NA
AVL75517.1\|3932294_3933692_-\|terminase	terminase	A0A2K9V3I6	Faecalibacterium_phage	1.5e-84	40.3
AVL75518.1\|3933890_3934910_-\|terminase	terminase small subunit	Q6V7Q7	Burkholderia_virus	6.9e-47	45.2
AVL75519.1\|3935024_3935264_-	hypothetical protein	NA	NA	NA	NA
AVL75520.1\|3935391_3936081_-	hypothetical protein	Q5G8R0	Enterobacteria_phage	3.0e-94	71.6
AVL75521.1\|3936502_3936964_-\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	5.0e-13	40.4
AVL75522.1\|3937127_3937598_-	lysozyme	A0A1W6JNW4	Morganella_phage	2.0e-46	55.9
AVL75523.1\|3937597_3937867_-	hypothetical protein	A0A2H4FNF0	Salmonella_phage	8.1e-24	64.4
AVL75524.1\|3938109_3938454_+	hypothetical protein	NA	NA	NA	NA
AVL75525.1\|3938580_3939114_-	antiterminator	Q5TJL7	Enterobacteria_phage	9.8e-37	54.5
AVL75526.1\|3939101_3939416_-	hypothetical protein	A0A1I9KFA7	Aeromonas_phage	4.9e-36	72.9
AVL75527.1\|3939427_3940021_-	hypothetical protein	H9C173	Pectobacterium_phage	8.0e-64	58.7
AVL75528.1\|3940097_3940436_-	hypothetical protein	H9C172	Pectobacterium_phage	2.7e-32	61.7
AVL75529.1\|3940525_3940765_-	hypothetical protein	NA	NA	NA	NA
AVL75530.1\|3940768_3940981_-	hypothetical protein	NA	NA	NA	NA
AVL75531.1\|3940984_3941335_-	hypothetical protein	NA	NA	NA	NA
AVL75532.1\|3941339_3941636_-	hypothetical protein	NA	NA	NA	NA
AVL75533.1\|3941650_3942184_-	hypothetical protein	Q7Y3W6	Yersinia_phage	5.2e-14	49.3
AVL75534.1\|3942176_3942473_-	hypothetical protein	NA	NA	NA	NA
AVL75535.1\|3942469_3942700_-	hypothetical protein	NA	NA	NA	NA
AVL75536.1\|3942702_3942873_-	palmdelphin	NA	NA	NA	NA
AVL76214.1\|3942894_3944259_-	replicative DNA helicase	Q76H51	Enterobacteria_phage	5.0e-101	45.9
AVL75537.1\|3944258_3944849_-	DNA replication protein DnaC	K7PLU3	Enterobacteria_phage	5.2e-47	48.7
AVL75538.1\|3944841_3945654_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	1.7e-40	77.4
AVL75539.1\|3945655_3945880_-	hypothetical protein	H9C163	Pectobacterium_phage	7.3e-18	62.2
AVL75540.1\|3945897_3946353_-\|tRNA	tRNA-(guanine-N1)-methyltransferase	H9C162	Pectobacterium_phage	1.0e-26	51.4
AVL75541.1\|3946391_3946577_-	hypothetical protein	A0A1W6JP24	Morganella_phage	7.3e-08	58.0
AVL76215.1\|3946684_3947326_+	XRE family transcriptional regulator	A0A1W6JP50	Morganella_phage	6.7e-32	37.8
AVL75542.1\|3947810_3948143_+	hypothetical protein	NA	NA	NA	NA
AVL75543.1\|3948151_3948403_+	hypothetical protein	NA	NA	NA	NA
AVL75544.1\|3948415_3950455_+	hypothetical protein	H9C157	Pectobacterium_phage	1.2e-122	38.7
AVL75545.1\|3950454_3950955_+	hypothetical protein	H9C156	Pectobacterium_phage	4.1e-37	54.0
AVL75546.1\|3951001_3951181_+	hypothetical protein	NA	NA	NA	NA
AVL75547.1\|3951211_3951442_+	hypothetical protein	A0A2H4JB60	uncultured_Caudovirales_phage	5.5e-13	54.7
AVL75548.1\|3951438_3952041_+	HNH endonuclease	M1PKJ5	Streptococcus_phage	2.7e-19	34.7
AVL75549.1\|3952447_3952654_+	hypothetical protein	H9C154	Pectobacterium_phage	3.8e-05	44.1
AVL76216.1\|3952662_3952905_+	excisionase	NA	NA	NA	NA
AVL75550.1\|3952879_3954013_+\|integrase	integrase	Q77Z04	Phage_21	2.8e-150	71.4
AVL75551.1\|3954135_3955389_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.4e-20	92.6
3955550:3955564	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4195374 : 4246728

Morganella_phage(30.0%)

head,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL75743.1\|4195374_4197756_-	hypothetical protein	F1C5A8	Cronobacter_phage	1.3e-32	44.6
AVL75744.1\|4197817_4200295_-\|tail	phage tail protein	F1C5A7	Cronobacter_phage	2.7e-230	48.1
AVL75745.1\|4200281_4200674_-	hypothetical protein	F1C5F2	Cronobacter_phage	2.0e-42	56.5
AVL75746.1\|4200673_4201141_-	hypothetical protein	F1C5F1	Cronobacter_phage	8.3e-40	52.3
AVL75747.1\|4201137_4201620_-	hypothetical protein	F1C5F0	Cronobacter_phage	4.5e-57	65.0
AVL75748.1\|4201707_4202238_+	hypothetical protein	A0A077K9U2	Edwardsiella_phage	2.8e-20	39.2
AVL75749.1\|4202455_4205725_-	hypothetical protein	A0A1W6JNU2	Morganella_phage	1.5e-79	28.9
AVL75750.1\|4205836_4206358_-	hypothetical protein	NA	NA	NA	NA
AVL75751.1\|4206357_4206696_-	hypothetical protein	NA	NA	NA	NA
AVL75752.1\|4206748_4207633_-	hypothetical protein	W6AT81	Vibrio_phage	7.6e-10	52.5
AVL75753.1\|4207756_4208107_-	DNA-binding protein	H6WRU6	Salmonella_phage	2.2e-13	48.0
AVL75754.1\|4208228_4208396_+	Arc family DNA binding domain-containing protein	I6R9A8	Salmonella_phage	5.2e-05	43.1
AVL76226.1\|4208694_4209198_+	hypothetical protein	A0A0U4J8Z7	Pseudomonas_phage	4.4e-23	43.3
AVL75755.1\|4209194_4210265_+	hypothetical protein	G9L689	Escherichia_phage	1.7e-35	65.8
AVL75756.1\|4210327_4210705_-	hypothetical protein	NA	NA	NA	NA
AVL75757.1\|4210704_4210953_-	hypothetical protein	NA	NA	NA	NA
AVL75758.1\|4210953_4211271_-	hypothetical protein	NA	NA	NA	NA
AVL75759.1\|4211592_4211838_+	Arc family DNA-binding protein	A0A0M5M1J2	Salmonella_phage	1.5e-16	52.5
AVL75760.1\|4211861_4212143_-	hypothetical protein	NA	NA	NA	NA
AVL75761.1\|4212230_4212479_-	hypothetical protein	NA	NA	NA	NA
AVL75762.1\|4212481_4213168_-	hypothetical protein	A0A1W6JNX2	Morganella_phage	1.5e-61	55.2
AVL75763.1\|4213216_4213957_-	DNA breaking-rejoining protein	G0ZNE6	Cronobacter_phage	2.3e-52	47.2
AVL75764.1\|4214018_4214387_-	hypothetical protein	NA	NA	NA	NA
AVL75765.1\|4214383_4214752_-	hypothetical protein	A0A1W6JNX7	Morganella_phage	9.1e-42	71.3
AVL75766.1\|4214753_4215125_-	hypothetical protein	NA	NA	NA	NA
AVL75767.1\|4215126_4215504_-	hypothetical protein	A0A1W6JP09	Morganella_phage	1.2e-36	60.0
AVL75768.1\|4215547_4216495_-	hypothetical protein	A0A1W6JNV5	Morganella_phage	8.1e-151	85.8
AVL75769.1\|4216500_4217187_-	hypothetical protein	A0A1W6JNU9	Morganella_phage	4.4e-66	73.6
AVL75770.1\|4217261_4218326_-\|head	phage head morphogenesis protein	A0A1W6JNT7	Morganella_phage	1.6e-102	51.4
AVL75771.1\|4218334_4219711_-	structural protein	A0A1W6JNV0	Morganella_phage	1.1e-212	78.4
AVL75772.1\|4219712_4221197_-\|terminase	terminase	A0A1W6JNY3	Morganella_phage	1.3e-267	87.4
AVL75773.1\|4221199_4221715_-	hypothetical protein	A0A0H5AUE2	Pseudomonas_phage	1.2e-47	55.0
AVL75774.1\|4221724_4222228_-	hypothetical protein	A0A173GC65	Salmonella_phage	8.9e-40	48.5
AVL75775.1\|4222403_4222661_-	hypothetical protein	NA	NA	NA	NA
AVL75776.1\|4222868_4223057_-	hypothetical protein	NA	NA	NA	NA
AVL75777.1\|4223089_4223323_-	hypothetical protein	NA	NA	NA	NA
AVL75778.1\|4223333_4223873_-	Rha family transcriptional regulator	A0A0P0ZFJ1	Escherichia_phage	7.3e-64	65.2
AVL75779.1\|4224287_4224614_-	Rz1 lytic protein	A0A1W6JP52	Morganella_phage	1.1e-06	50.0
AVL75780.1\|4224809_4225202_-	peptidase M15	E7C9S9	Salmonella_phage	1.5e-55	82.8
AVL75781.1\|4225164_4225467_-	hypothetical protein	NA	NA	NA	NA
AVL75782.1\|4225463_4225877_-	hypothetical protein	NA	NA	NA	NA
AVL75783.1\|4226644_4227148_-	antiterminator	A0A1P8DTF1	Proteus_phage	8.0e-73	80.2
AVL75784.1\|4227144_4227348_-	hypothetical protein	NA	NA	NA	NA
AVL75785.1\|4227337_4227703_-	hypothetical protein	E5AGG1	Erwinia_phage	2.0e-41	69.2
AVL75786.1\|4227699_4227990_-	DUF1364 domain-containing protein	A0A220NQY2	Salmonella_phage	2.6e-36	78.1
AVL75787.1\|4228089_4228413_-	hypothetical protein	NA	NA	NA	NA
AVL75788.1\|4228412_4228595_-	hypothetical protein	NA	NA	NA	NA
AVL75789.1\|4228605_4229052_-	hypothetical protein	A0A096XEN2	Escherichia_phage	1.6e-53	65.8
AVL75790.1\|4229061_4229298_-	hypothetical protein	NA	NA	NA	NA
AVL75791.1\|4229290_4229548_-	hypothetical protein	A0A1P8DTF4	Proteus_phage	2.4e-41	90.5
AVL75792.1\|4229569_4229875_-	hypothetical protein	NA	NA	NA	NA
AVL75793.1\|4229874_4230096_-	hypothetical protein	NA	NA	NA	NA
AVL75794.1\|4230095_4230278_-	hypothetical protein	NA	NA	NA	NA
AVL75795.1\|4230289_4230493_-	hypothetical protein	NA	NA	NA	NA
AVL75796.1\|4230518_4231247_-	DNA replication protein DnaC	A0A1W6JP39	Morganella_phage	2.7e-98	74.8
AVL75797.1\|4231246_4232032_-	hypothetical protein	G8C7U5	Escherichia_phage	4.3e-81	57.6
AVL75798.1\|4232031_4232733_-	hypothetical protein	NA	NA	NA	NA
AVL75799.1\|4232790_4233135_-	hypothetical protein	NA	NA	NA	NA
AVL75800.1\|4233266_4233473_-	XRE family transcriptional regulator	A0A1W6JNW6	Morganella_phage	8.7e-10	71.7
AVL75801.1\|4233571_4234243_+	XRE family transcriptional regulator	A0A1W6JNY2	Morganella_phage	9.0e-88	73.8
AVL75802.1\|4234329_4235391_+	hypothetical protein	U5P4L0	Shigella_phage	1.4e-114	60.9
AVL75803.1\|4235407_4235914_+	hypothetical protein	NA	NA	NA	NA
AVL75804.1\|4236351_4236660_+	hypothetical protein	A0A1W6JNZ0	Morganella_phage	1.8e-19	59.2
AVL75805.1\|4236729_4236909_+	hypothetical protein	NA	NA	NA	NA
AVL75806.1\|4236983_4237262_+	hypothetical protein	NA	NA	NA	NA
AVL75807.1\|4237316_4237826_+	hypothetical protein	NA	NA	NA	NA
AVL75808.1\|4237855_4238071_+	hypothetical protein	A0A1P8DTG4	Proteus_phage	8.0e-06	49.1
AVL75809.1\|4238072_4238327_+	hypothetical protein	A0A249XWT3	Proteus_phage	4.1e-17	57.9
AVL75810.1\|4238391_4239390_+	hypothetical protein	A0A077KCC0	Edwardsiella_phage	3.3e-09	46.3
AVL75811.1\|4239609_4239810_+	hypothetical protein	NA	NA	NA	NA
AVL75812.1\|4239806_4240013_+	hypothetical protein	NA	NA	NA	NA
AVL75813.1\|4240009_4240828_+	exodeoxyribonuclease VIII	A0A1P8DTH1	Proteus_phage	2.7e-147	90.1
AVL75814.1\|4240820_4241639_+	recombinase RecT	A0A1P8DTF2	Proteus_phage	5.6e-132	89.2
AVL75815.1\|4241631_4242093_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	3.5e-51	80.9
AVL75816.1\|4242155_4242413_+	hypothetical protein	A0A192Y5W0	Salmonella_phage	1.4e-12	43.5
AVL75817.1\|4242431_4242590_+	hook protein	NA	NA	NA	NA
AVL75818.1\|4242624_4242945_+	hypothetical protein	NA	NA	NA	NA
AVL75819.1\|4242944_4243211_+	hypothetical protein	A0A1P8DTI8	Proteus_phage	6.4e-05	37.9
AVL75820.1\|4243203_4243500_+	hypothetical protein	NA	NA	NA	NA
AVL75821.1\|4243660_4243888_+	hypothetical protein	NA	NA	NA	NA
AVL75822.1\|4244046_4244256_+	hypothetical protein	NA	NA	NA	NA
AVL75823.1\|4244252_4244612_+	protein ninX	A0A1P8DTH6	Proteus_phage	3.4e-09	41.2
AVL75824.1\|4244601_4245147_+	phage N-6-adenine-methyltransferase	A0A1W6JP96	Morganella_phage	6.0e-58	60.3
AVL75825.1\|4245154_4245391_+	hypothetical protein	NA	NA	NA	NA
AVL75826.1\|4245383_4245575_+	hypothetical protein	G3CFG7	Escherichia_phage	1.2e-08	47.3
AVL75827.1\|4245552_4246728_-	DUF4102 domain-containing protein	A0A2R2Z2Y0	Escherichia_phage	9.0e-184	76.5

DBSCAN-SWA_8

4430961 : 4446466

Burkholderia_phage(30.77%)

tail,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVL75985.1\|4430961_4432209_-\|tail	phage tail protein	E5AGC6	Erwinia_phage	8.5e-15	40.4
AVL75986.1\|4432214_4432874_-	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	2.9e-38	40.5
AVL75987.1\|4432870_4434058_-	hypothetical protein	A0A2H5BG53	Pseudoalteromonas_phage	1.7e-73	38.7
AVL75988.1\|4434050_4434395_-	hypothetical protein	Q6IWQ2	Burkholderia_phage	1.8e-12	35.7
AVL75989.1\|4434391_4435084_-	hypothetical protein	A0A2H4P6V3	Pseudomonas_phage	5.2e-30	39.7
AVL75990.1\|4435087_4435903_-	hypothetical protein	Q6IWQ0	Burkholderia_phage	2.3e-45	37.5
AVL75991.1\|4435895_4436192_-	hypothetical protein	NA	NA	NA	NA
AVL75992.1\|4436191_4436722_-	hypothetical protein	NA	NA	NA	NA
AVL75993.1\|4436718_4438782_-	hypothetical protein	A0A2H5BG44	Pseudoalteromonas_phage	2.5e-19	27.3
AVL75994.1\|4438846_4439533_-	hypothetical protein	NA	NA	NA	NA
AVL75995.1\|4439680_4440139_-	hypothetical protein	Q6IWV4	Burkholderia_phage	2.0e-22	47.2
AVL75996.1\|4440190_4440643_-	hypothetical protein	I7ATP4	Escherichia_phage	2.3e-23	39.6
AVL75997.1\|4442150_4442594_-\|lysis	lysis protein	NA	NA	NA	NA
AVL75998.1\|4442757_4443228_-	lysozyme	A0A1W6JNW4	Morganella_phage	1.9e-47	57.9
AVL75999.1\|4443227_4443497_-	hypothetical protein	A0A2H4FNF0	Salmonella_phage	2.5e-25	66.7
AVL76000.1\|4443604_4444111_-	hypothetical protein	NA	NA	NA	NA
AVL76001.1\|4444432_4444939_-	AAA family ATPase	NA	NA	NA	NA
AVL76002.1\|4445189_4445993_-	antitermination protein	F1C595	Cronobacter_phage	1.4e-55	43.6
AVL76003.1\|4446004_4446466_-	DUF1367 domain-containing protein	H9C173	Pectobacterium_phage	6.5e-29	38.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027418

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection