CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP023271	Stenotrophomonas sp. MYb57 chromosome, complete genome	13 crisprs	DEDDh,csa3,WYL,cas3,DinG	0	4	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP023271_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023271_1

43213-43310

Orphan

Consensus_repeat	Method
TGAATCGGTGGGCCACAAGCCCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023271_1

>merge|CP023271|1|43213-43310|CRISPRCasFinder
TGAATCGGTGGGCCACAAGCCCTGATAGATAGCGCCGGGCCACGCCCGGCGGAACGCAATCAGGACGCCTCGGTTGAATCGGTGGGCCACAAGCCCTG

>CP023271|1|1|43213-43310|CRISPRCasFinder
TGAATCGGTGGGCCACAAGCCCTG	ATAGATAGCGCCGGGCCACGCCCGGCGGAACGCAATCAGGACGCCTCGGT
TGAATCGGTGGGCCACAAGCCCTG

Protein	Signature genes	Signature genes Name	Protein_function
CP023271.1\|AVJ31313.1\|49159_50443_+\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
CP023271.1\|AVJ31311.1\|47607_48612_+\|C4-dicarboxylate-ABC-transporter	unknown	unknown	gnl\|CDD\|270389
CP023271.1\|AVJ35142.1\|25671_26598_+\|Ku-protein	unknown	unknown	gnl\|CDD\|238408
CP023271.1\|AVJ31310.1\|46740_47568_+\|2-keto-4-pentenoate-hydratase	unknown	unknown	gnl\|CDD\|226480
CP023271.1\|AVJ31306.1\|39371_43175_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379155
CP023271.1\|AVJ31309.1\|45599_46583_-\|xylanase	unknown	unknown	gnl\|CDD\|223730
CP023271.1\|AVJ31300.1\|29304_29694_-\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ31308.1\|43980_45603_-\|carboxylesterase	unknown	unknown	gnl\|CDD\|225181
CP023271.1\|AVJ31303.1\|34542_35181_-\|2-dehydro-3-deoxyphosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
CP023271.1\|AVJ31298.1\|25127_25526_+\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ31315.1\|52088_53147_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380487
CP023271.1\|AVJ31316.1\|53389_54238_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|179169
CP023271.1\|AVJ31307.1\|43341_43929_-\|cysteine-dioxygenase	unknown	unknown	gnl\|CDD\|380416
CP023271.1\|AVJ31304.1\|35167_36187_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571
CP023271.1\|AVJ31299.1\|26601_29079_+\|DNA-ligase-D	unknown	unknown	gnl\|CDD\|235658
CP023271.1\|AVJ31305.1\|36472_39235_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
CP023271.1\|AVJ31314.1\|50460_52050_+\|xylosidase	unknown	unknown	gnl\|CDD\|350116
CP023271.1\|AVJ31301.1\|29799_30828_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
CP023271.1\|AVJ31302.1\|30902_32432_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143434
CP023271.1\|AVJ31312.1\|48622_49156_+\|TRAP-transporter-permease-DctQ	unknown	unknown	gnl\|CDD\|225632

Protein	Function_ID	Function_description	E-value
CP023271.1\|AVJ31313.1\|49159_50443_+\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	3.35921e-125
CP023271.1\|AVJ31311.1\|47607_48612_+\|C4-dicarboxylate-ABC-transporter	gnl\|CDD\|270389	cd13671, PBP2_TRAP_SBP_like_3, Uncharacterized substrate-binding protein of the Tripartite ATP-independent Periplasmic transporter family; the type 2 periplasmic-binding protein fold. This subfamily includes uncharacterized periplasmic substrate-binding proteins similar to TRAP transport systems such as SiaP (a sialic acid binding virulence factor) and TeaA (an ectoine binding protein). TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.49684e-132
CP023271.1\|AVJ31310.1\|46740_47568_+\|2-keto-4-pentenoate-hydratase	gnl\|CDD\|226480	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism].	4.12442e-35
CP023271.1\|AVJ31306.1\|39371_43175_+\|hypothetical-protein	gnl\|CDD\|379155	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.	0.000599277
CP023271.1\|AVJ31309.1\|45599_46583_-\|xylanase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	2.84652e-23
CP023271.1\|AVJ35142.1\|25671_26598_+\|Ku-protein	gnl\|CDD\|238408	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.	8.00228e-116
CP023271.1\|AVJ31308.1\|43980_45603_-\|carboxylesterase	gnl\|CDD\|225181	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].	6.44487e-127
CP023271.1\|AVJ31303.1\|34542_35181_-\|2-dehydro-3-deoxyphosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	3.61683e-90
CP023271.1\|AVJ31315.1\|52088_53147_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|380487	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	3.87262e-114
CP023271.1\|AVJ31316.1\|53389_54238_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	gnl\|CDD\|179169	PRK00924, PRK00924, 5-keto-4-deoxyuronate isomerase; Provisional.	1.73807e-177
CP023271.1\|AVJ31307.1\|43341_43929_-\|cysteine-dioxygenase	gnl\|CDD\|380416	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain. This family contains cysteine dioxygenase (CDO; EC 1.13.11.20), which catalyzes the conversion of cysteine to cysteine sulfinic acid, the first step in the biosynthesis of essential oxidized cysteine metabolites such as sulfate, hypotaurine, and taurine. CDO also plays an important role in the regulation of intracellular cysteine levels in mammals; CDO expression is altered in cancer cells, and abnormal or deficient CDO activity has been linked to Parkinson's disease, Alzheimer's disease, and rheumatoid arthritis. CDO is an iron-dependent thiol dioxygenase that uses molecular oxygen to oxidize the sulfhydryl group of cysteine to generate cysteine sulfinic acid. The CDO active site contains an amino acid-derived cofactor. These enzymes are found in prokaryotes as well as eukaryotes and belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	6.12995e-30
CP023271.1\|AVJ31304.1\|35167_36187_-\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	2.05516e-83
CP023271.1\|AVJ31299.1\|26601_29079_+\|DNA-ligase-D	gnl\|CDD\|235658	PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.	0
CP023271.1\|AVJ31305.1\|36472_39235_+\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	0
CP023271.1\|AVJ31314.1\|50460_52050_+\|xylosidase	gnl\|CDD\|350116	cd09002, GH43_XYL-like, Glycosyl hydrolase family 43, beta-D-xylosidase (uncharacterized). This glycosyl hydrolase family 43 (GH43) subgroup includes enzymes that have been annotated as having beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	0
CP023271.1\|AVJ31301.1\|29799_30828_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
CP023271.1\|AVJ31302.1\|30902_32432_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
CP023271.1\|AVJ31312.1\|48622_49156_+\|TRAP-transporter-permease-DctQ	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	4.09353e-26

>CP023271.1|AVJ31306.1|39371_43175_+|hypothetical-protein
MPHRSTLSRCLLLAVALAAGPAMAAADAPTLLFHVDAGKGLEAVVAQGEAVPNFRDKVDIVDDGARGKAIQWQDDGVLAWDAPGNILAQRGTLAFDWRARYAVGEAPFVIFRVGYADHSSWDMAWLRIDWNGHGFDAFVTDANLARTRVSFRMDTPPRADQWLHLAFAWDEDQGVRLFVDGREVARVQASGDYDAALDQLGLAGRVMAPYQVQSRYNFLRGSDFQHIRVYDRMLDAAAVSALARGKAAESAVASAADDRAWLHRFGWEGAPPPPLTAASTRIRKIEFDDARDLKAWMWKATDGIAETTWPGVYNRSRLPGRNDYFQLPDWNTYVESGQHLDLSVPAGETVNRVEIRGAAFGTLAHGRDAAHATQVLATRPQGVVRSVDDIPAQTGGVLRFSNVEQETPIQEIWAYGVSEGAEPDGTVKQTYVIDSQALPDYTNLDTLRRYIEGRYPAAERSTVMALPKGAGSRRRPADSLPTQPKPIVHVLIPSGVGDAPANQPLIRSWAYSWENMHDGLDGVAIDIPALDLPATHDGLIPLNLRIKDPIWPARDMIDVSVSVQPGQKRTLWLDLRDRILTADSLWLSIASAAPGFDAKALDGAQVRLVFKPRADALKEHVADRFNQVRDNWGFLVEEHTTSKRQRLYARVYADLSDLLRVDPDHELGRLYWNYISYNSQGRPPYTAPEVPKGVPAWAFHQVQDLAQVRQFVDWWIDQRQVAYGDFGGGISDDSDLTQQWPGLALMGVQPDRLNASLTALSDAVYRNGMFSNGLSTIETDELHAYEEGINTNSAMLYLNWGDPLTLERLMETVKAFDERIILRNTQGHVLFSSNWFGGNKVYREPNWQWQKPYSFPVLHPAFLLGQYNADPTGRRLVIGLADGYLAHAGTDDKGRFTLPNEINWATGATRGGELNNGSGSGDTMHTFWAAWRWTGDAKYLQALDYRVQRGGPGALANLGENYVEALGRQQDWYPLLTAEADAGKTGFASLMAWQASGERKYIDALHAEGLQAKAQRAYMNTEGHWWSDRVEAPSEFLQRARLGGIALKRNQSWPGHTVSWRFDREGAAEQVALLVHAPSRERFTITSHNLGARVIAADMTGWNVGSGSWRVRSGMDADGDGRIDGRPRERTVQLETSASVPMQFQPGRTELFEFERVSAGTPVEMRPDLGVGRGDVRVDGRQVHVTVHGLGHVASGVGVAILEDARGREIARTEVPAIAAPTDLLPKTAVVSLPLPAGERGGLRVRVALADGGEEVTRLNNVVDVPR
>CP023271.1|AVJ31305.1|36472_39235_+|TonB-dependent-receptor
MHSRNHEKKTPVTLLALAVALALAGNAGAQQQSANPNATDLDTVTVTGYRASVEKALDIKRGEAGVVDAIVAEDIGKFPDLNLAESLQRIPGVVITREAGEGRNISVRGLGPEFTRVRINGMEALTTVGAGDQSGGTNRGRGFDFNVFASDLFSQLLVRKTASADVEEGSLGATVDLRTARPFDYDGFTFAASGQASYNAMAEKADPRIAALVSNTFADGTFGALLSVAYSERQALEEGSNTGRWANGPSNGNFAASSPFAAARGADVFHPRFPRYVQMEHEQKRLGVTGSLQWKPNDATEISLDALYSKIDATRDEHYIEAISFSRGANASARLSGKPTTIVKNGEIRDNALLYGEFDNVDIRTENRHDEWSTEFKQIALNGQHRFGDDFTLSGKIGISRSKHENPVQTTVIMDKYDVDGYSYDYRGNSRAPILNYGIDPTNPNGWELAEIRLRPQYVDNDFDTGQIDFNWNISPGFRLKGGVLAKDYTFKTVELRRASELAVPNFAGGNKIVPVNLTEQAGLKGINGSPSNWVVPDLDAIAEQLDIYSNSGTFAVAPRANNVRSVEEKDRGAYLMGEFSTELGSLPLSGNFGVRYVRTKQSATGQSTLANGTVETTVSRTYDDTLPSFNLVAEVTPDFLIRLGAAKVMSRPGLGSLTPGATVAVAGGARTISSGNPVLDPIRATNVDLGFEWYFAEGAMAGIGLFYKDIESFVQTTREVRPYSDSGLPASLLVGTGASATDDFTYSKPVNTPGGELHGVEANYTQPFTFLPGKWANLGMQLNYTWVESKIQYINAAGQPVMKTDLTGLSKSSWNATLFYEGEKFAGRISATNRDDYLTQAPGQETGFNLDGYHGMTGTTVFDASIRYKISDQLELSLEGINLTNEASDEWVYSPLTGRLPLQYTETGRQYLLGLRYKF
>CP023271.1|AVJ31304.1|35167_36187_-|sugar-kinase
MGRIVCFGELLLRLGAPGRELLLQSPQLQVHVGGAEANVAVSLSRFGHDVAMVSTVAGNALGAHALAELRRHGVDTRGVREDAEGRMGLYFLTTGAVQRASEVVYDRADSAFANSTAADYDWPALLQGAQWLHLSGVSPALGADVAQATLAAARAARALGVRVSFDGNFRPKLWQRWGGDARAILHELFAQADIVFADYRDIEVILGQRFEQADVVARVEAAAAAAFEAFPQLQWMACTQRQTLSVDHHALGALLLGRDGTRAQAPVRQLQGIVDRIGGGDAFAAGILHGILSAFDADATVRFGLAAGGLKHSIPGDFNPVSEADVLALVGEERFDVRR
>CP023271.1|AVJ31303.1|34542_35181_-|2-dehydro-3-deoxyphosphogluconate-aldolase
MSGADPRVRAVLKLAPVIPVFTPDDIDDAVQVAQALFRGGLPVIEVTLRTPRALEAIKAMVEAVPDAVIGAGTVLDAAQMQAVKQAGGRFAVSPGATPRLYAAARDADLPYLPGVATGSELIVGLEHGLDTFKFFPAVQAGGAAMLSAWHGPFGDVRFCPTGGISAQTASQFLHLPNVLCVGGSWLTTAALMQTRDWDSVERLAREAAVLAG
>CP023271.1|AVJ31302.1|30902_32432_-|aldehyde-dehydrogenase-family-protein
MNAVPSTRPHATDPRSLFKPRYGNYIGGEWIAPRSGQYFDNISPVNGQVFTEVARSNAEDIDAALDAAHAAKDAWGRTSAAHRALLLNRIADRIEQNLELLAHAETWDNGKPIRETLNADVPLMADHFRYFAGCLRAQEGSLSQIDDDTVAYHFHEPLGVVGQIIPWNFPLLMAAWKLAPALAAGNCVVLKPAEQTPASILVLMEVIGDLLPPGVLNVVNGFGLEAGKPLASSPRIAKIAFTGETSTGRLIMQYASQNLIPVTLELGGKSPNLFFADVMAEDDDFLDKAVEGFVMFAFNQGEVCTCPSRALVQESIYERFMERALERVAAIRQGNPLDPNTMVGAQASGEQLEKILSYIAIGREEGAEVLIGGDKAALGGDLAGGFYVQPTVFKGHNGMRVFQEEIFGPVVSVTTFRTEEEALQIANDTLYGLGAGVWSRDAARLYRVGRAIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRENHRMMLDHYQQTKNLLVSYAPKKLGFF
>CP023271.1|AVJ31301.1|29799_30828_-|alcohol-dehydrogenase-AdhP
MNRTMKAAVVREFGKPLVIEEVVVPRPGAGEVLVKIEACGVCHTDLHAAEGDWPVKPNPPFIPGHEGVGHVVAVGGGVGHIKEGDRVGIPWLYSACGHCEHCLGGWETLCETQRNTGYSVNGGFAEYALADANYVGLLPKEVGFVEIAPVLCAGVTVYKGLKVTDTKPGDWVAISGIGGLGHMAVQYARAMGLNVAAVDVDDAKLALARRLGAQVTVNARTTDPAAFLKKEIGGAHGALVTAVSPKAFEQALGMVRRGGTVSLNGLPPGNFPLDIFGMVLNGVTVRGSIVGTRLDLQESLQFAAEGKVAATVSTDRLENVNEVFARMHAGTIEGRVVIDFAA
>CP023271.1|AVJ31300.1|29304_29694_-|hypothetical-protein
MPGTLKTVFLSLLALIGALLALALVSSAAGWLPSLLRMTPGSEAQLGWDLAFTVLGGIAAIAFATYYAPCWPRAHGTSIWSLLVLGAGYGLWVMGGDFPHWFVIGLLVSLPVQLLLGWWFGRRASRDRR
>CP023271.1|AVJ31299.1|26601_29079_+|DNA-ligase-D
MSLHQYRRKRRLGGGSGQTPEPDDAPARGNPKRRPVFVVQLHHASSRHYDFRLEMDGVLKSWAVPKGPSLRVGEKRLAVEVEDHPLSYAGFEGDIPQGHYGAGHVDVFDHGSWACEGDPLQALAAGKIDFVLHGQRLAGGWKLVRTAMKGRQVQWLLIKRDDAQARDAEADDLLHTPALKSAKRSRVSAKETAPAPRAAHPRKADARWHARALQLDGARDRSYPHQFKPQLTDHRDTAPDGERWLHEIKWDGYRLLADLHEGEVTLRSRNGLDWTADFPEVVQALQALPVRDARLDGELVVLDDNGRSDFAALQRVIDGSSKQPLRYIVFDLPGVAGVDISRAPLLQRKALLKELIGDTVGTLAFSEHVIDHGPAVFEASGKAGFEGIVSKQVDAPYVNTRARSWVKVKHEDTDEFLIIGHTAPKGSRVGFGSLLLATPDKGGLRYVGRVGTGFDDEGLRALAATLAPLAVKEAVLPLPAHVPLRAASVRWVKPVTVAEVAFRGWGKEGLLRQASFKRLRSDKKKEDLAMSATPADDGDDVAITHPERVVFAKKKLSKGDVADYYRQMARWILPEISGRPLSLLRCPDGVGKACFFQKHHGQGLGDAVHAVPLQQKSGREDYVYIDDERGLLQLVQMNTLELHPWGATVADPEHPDRLVFDLDPGEGVSWADVKRGARDVRDRLQQTGLQSFVRLSGGKGVHVVVPLQPAADWDDAKAFCEAFAQAMAEQAPDRYVATMSKAKRSGVIFIDWLRNTRGATSVCSWSLRARESAGVAVPLRWEELARVSAADAFPMDKALARAKRLKADPWQGIDALKQTLPTLQR
>CP023271.1|AVJ35142.1|25671_26598_+|Ku-protein
MARPIWTGTLSFGLLNVPVSLMSGERKVDLHFRMLDSRDRKPIRFERVNADTGEEVPWKDIVKAYEYDKGSYVVLEEDDIRSAAPESHETVEVETFVDASQIDPRYYEKPYLLVPGKKAEKGYVLLRETLRSTGKVGIARVVVRTREYLCAVMPNDDALVLMILRYPQELVEPDDYKLPSGKLADYRITSKETAMAEQLIESMAGDWDPSQYHDEFRERLQQVLNKRIKSKGGTTQVEDEPAPREDATTNVVDFMALLQKSLDANKRTPAKKAAARKAPAKKAAAKKAPAKKAAKKAARKTPARRKAG
>CP023271.1|AVJ31298.1|25127_25526_+|hypothetical-protein
MPRLERPAPSVFNALLDPLGQRSTQRRTRRLEDPQAVAQDYLQYMLSDYEERRGQGHRNWRDLCPVYAFALTTHAADWPRGGEADTSGELAEHWDQMRGQSRLNWAQAQPVVEDAWRALDHIPAAAVRPLLQ
>CP023271.1|AVJ31307.1|43341_43929_-|cysteine-dioxygenase
MEAMFTPPPFTGRERLIEGIDAAVCLVDPQAITGALQRVLREAIVDPLIELPPCVRRPVDGHYARRELYRSATLGYSVIAMCWGPGQGTPLHDHDAMWCVEGVWQGELIVTPYALLEQRGERHRFAAQDTLYGHRGSAGSLIPPHEYHTLRNASDEDVAVSVHVYQGVMERSAVFDPLDDGWYQRRVKVMETEAS
>CP023271.1|AVJ31308.1|43980_45603_-|carboxylesterase
MNQGDANLQRRRFLRDSARWALATATLAALPAAAVPGPRDDTQVVARLRAGRVRGQREHGVHVFRGLRYGADTSAYRFQPPRRETGWRGIADALEYAASAPQSGADGPGSEDCLFLNVWTPALGDGGKRPILVYIHGGGFNNGSGSDPLYDGSALCRRGDVVVVTVNHRLNTFGYLYLGALGDPRYAASGNVGQLDLVQALQWVREHAAVFGGDAGNITVFGQSGGGAKIATLMAMPAAKGLFQRAWTMSGQQVTAAGPRAAAQRASIAMEAVDARDLQALLRLPATELLAATRARDPSRVESSALYFGPVLDEVVLPVHPFWPQAPAQSASIPMVIGNTRDETRAFLGNDPANFTLTWENLPAQLEKQQFVDLLPSVVIAEYRRLYPHYTPSEVFFAATTAGRSWRGAVEELEARARQTTGAAPTWAYQLDWPSPVEDGRLRAFHTLDIPLVFDNAGLPGARTGGGEDARALAATMSDALIAFARTGDPNHAGMSQWAPYGVPQRQTMVFDRHSHVVDDPRAGERALYAKVPFVQRGTQ
>CP023271.1|AVJ31309.1|45599_46583_-|xylanase
MCFSRVLLLLSGLLLTIPASAADVPLRAGEHLGRELAGEQLPLWPAGQVPGETGTARPARVVERSDDPAHPDRFIDQVDAPYLLVHTPARANGRALLVIPGGGYQRVVIDKEDSALVPEWVDRAGYTLFVLRYRLPQAGRDRQAALADAQRALRVVRDQAARRRLDADSVSVMGFSAGGHVAARLATGFDAPVYPPRDAIDRLSARPARAVLVYPVIDMGAHAHSGSRGRLLGEQPDAALAAQYSMQQHVRADMPPTLLIHANDDRVVNVHNSEVMAQALAKAGVEHELHLFAHGGHGFGMRMPPDSTLAVWPLLAQRWLQATEAAH
>CP023271.1|AVJ31310.1|46740_47568_+|2-keto-4-pentenoate-hydratase
MSNEHGIHGQTPAPDDAAAIAHAFTTARRSGQALPGFPGLVPPDLVAAYQVQDLAIASWDDQVVGWKVGYIAAERRDASGDDRLLGPVFSRQLQNATGGTVDIPVFVGGFGAVEAEYVLELLEDAPAAQLHWTPEQAEALPARLYIGVEVASSPLATINELGPRVVVSDFGNNNGLVLGPEIADWTARDETDLRAETLIEGEVVGTGGATRLPGGLRAAYAFALSRSALRGRPLRRGDLIATGNATGIHDITVGQTALVRFAGFGEIACRAVRAG
>CP023271.1|AVJ31311.1|47607_48612_+|C4-dicarboxylate-ABC-transporter
MITRRHFLAGGAAALATPMLAACGRGPADAIDGGQLLTATDVHVADYPTVTAVKWIGETLQRESNGRLRLRQYHSGQLGRESEAIDMARFGAIDITRVYAGALNNAFPLTQALCLPYVFESVAHQRAALDGGIADAVLRGFESRDLVGLAIYDSGARCFYNTKHPIVQPGDLHGLKLRVASSDIFIQLMRLLGANPTPMSLGDTFSGMETHMIDGAENNMRSFHSSRHFEAAHYWSQSDHSYAPDVLLMSRASFERLQPADRQLLLETARASVKVMREQWDASEDAARRAVLASGVKANEVDLPAFRAAAQPLLQQYLQQPELAALVARIRAAA
>CP023271.1|AVJ31312.1|48622_49156_+|TRAP-transporter-permease-DctQ
MTETTISTGPGPGQRLLDRIADIAIHVAVAALLGLVVVQGWQVFARYVINDSPSWTEPVTLLLLATAMSLGAACGVHTNRHFGFFLLHAYMGPGLRRVVDVFTQLVVAVLGGFIAFWSADLLLDGMDIKTAGANLPQSINYLPLAVGGALMLLFALNRAWKALHAAAADADDAEGDR
>CP023271.1|AVJ31313.1|49159_50443_+|TRAP-transporter-large-permease
MGITILFSVFAALLLLGVPVAYALAAAALATLLYLDIPSIVLVQQISAGTGSASLIAIPLFIFAGEIMMRGGISERLIALASSLVGRMRGGLGQVSILSSLFFGGVSGSAIADVSAVGGTMIPQMVKRGYDRDFAVNVSITAALVALLVPPSHNLILFSAAAGGGLSIADLFAAGIVPALLMTLALMITGYVVARRRGYGVEVFPGWRAVLLRIVSALPGLGLVALIFVGIRAGIFTAVESAAIAVVYALLVTTVLYRQLRWREFFDTVIHAARSTGVILFVIATAAVFGWLLAYLQVPAAAVDFLQSFAHSQFMVLLMIVVMLLLLGTFMDLAPMILICTPIFLPVAKAYGIDPIHFGLVLVLTGGLGLVTPPVGSVLFIGTAIGKISVGQSMRTIWPFWFAALGVLLIVTFFPSLSLWLPAALRA
>CP023271.1|AVJ31314.1|50460_52050_+|xylosidase
MTPTLHRTAATALLGLLLAALPALAADPAPAQWKRGIEHQRQGDLGNGTFLNPVLAGDRPDPSVLKDGEDYYLTLSSFDAYPGLPIWHSRDLVNWQPLGHAITQNVGAIWAPDIVKHQGRYFIYFPARTGERRSNFVVWADDIKGPWSAPIDIGLGGYIDPGHAVGEDGKRYLFLSGGDYVQLADDGLSVVGTPKHVYDGWRYPESWDVEAYAQEGPKVHFRDGWYYMTTAVGGTAGPPTGHMVITARSRSIHGPWVNAPNNPIMRTRSAAEPWWSRGHATVIEGTDGRWWMMYHGYENGFWTLGRQALLEPIEWTADGWFVAKGGDLGQPLRKPSGSALAPHGMALSDAFTGRTLGPQWAFFNPALDEYRRLRFSGDGLVLQGKGSTPRDASPLTTIAGDPAYQFEVQMEIAPGAVGGALLFYSDRLYVGVGSNGEQFVMHRYGEERPTRLAASAKGGRLWLRVTNNRHIVTIHSSADGQTWQKYPVQMEVSGYHHNVAGKFLALKPALYAAGNGAVTFRSFRYRALD
>CP023271.1|AVJ31315.1|52088_53147_+|LacI-family-transcriptional-regulator
MSVRNKNDAARPALAKGKAATINDIARLSGVSKKTVSRIINNSPLVRKDTRDKVEALMREVGYTPDPLARGLAFRRSFLIGMVYDNPTAQYIVDMQYGALDALRGSSFELVVHPCDSRSPGYIDGVRRFAQQQKLHGVILVPRASEDQALADMLDEIGCRFTRVAALPLDETSQMVVTHDRDGAAEAADYLLSLGHRDIALVTGPSAYRSAHERTAGFIEALSQRGIELPKDRIIEAGYTFESGVAAAEKLLLGKRRPTAIFTGNDEMAAGIYKVALRAGINIPRQLSIVGYDDSPLASRLWPSLTSVRRHTRDTGRTAAAMLIQPEGQPALQIASVRPHLIVRDSCQPPED
>CP023271.1|AVJ31316.1|53389_54238_+|5-dehydro-4-deoxy-D-glucuronate-isomerase
MYCKTHYATHPDAIKGASNDQLRELYLLDGLFNADAVTLKYTHYERFVLGGAAPVNGPLSLPAQTEPASAAGHPFLERRELGIINVGSGTGTVTVDGTVYTLGPKDGLYVAMGSKDVVFASQDAANPAQFYLASTPAHARFETKQLSIKDAVALDRGALETSNERTIYQYIVPATCQSSQLLLGLTVLKPGSVWNTMPPHLHDRRSEVYFYFDLGDSDRVYHFMGEPDAQRHIVIQNNEAVVSPPWSIHMGAGTSNYAFIWAMGGENLDYTDMHVLDICQLK

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Crispr_ID: CP023271_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023271_2

114450-114553

Unclear

Consensus_repeat	Method
AGTAGATCCACGCCATCCGTGGATG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP023271_2

>merge|CP023271|2|114450-114553|CRISPRCasFinder
AGTAGATCCACGCCATCCGTGGATGAAACGCGCGGACGGCCCGGCGCCAACCAAGGCGGCATCTACCCTGCACGGCATCAGTAGATCCACGCCATGCGTGGATG

>CP023271|2|2|114450-114553|CRISPRCasFinder
AGTAGATCCACGCCATCCGTGGATG	AAACGCGCGGACGGCCCGGCGCCAACCAAGGCGGCATCTACCCTGCACGGCATC
AGTAGATCCACGCCATGCGTGGATG

Protein	Signature genes	Signature genes Name	Protein_function
CP023271.1\|AVJ31363.1\|116437_118603_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372724
CP023271.1\|AVJ31358.1\|109515_110535_-\|exonuclease	unknown	unknown	gnl\|CDD\|379215
CP023271.1\|AVJ31368.1\|122325_123660_-\|peptidase-C69	unknown	unknown	gnl\|CDD\|223389
CP023271.1\|AVJ31360.1\|113220_113751_+\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ31352.1\|103688_104033_-\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ31367.1\|121618_122326_-\|DUF4159-domain-containing-protein	unknown	unknown	gnl\|CDD\|379342
CP023271.1\|AVJ31353.1\|104250_105378_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|235853
CP023271.1\|AVJ31356.1\|107073_109017_+\|transmembrane-BlaR-protein	unknown	unknown	gnl\|CDD\|310280
CP023271.1\|AVJ31354.1\|105374_106454_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
CP023271.1\|AVJ31365.1\|119717_120614_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
CP023271.1\|AVJ31355.1\|106683_107070_+\|methicillin-resistance-protein	unknown	unknown	gnl\|CDD\|367747
CP023271.1\|AVJ31364.1\|118599_119721_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131281
CP023271.1\|AVJ31351.1\|102639_103701_+\|DNA-topoisomerase	unknown	unknown	gnl\|CDD\|226099
CP023271.1\|AVJ35148.1\|125343_126927_-\|TldD-protein	unknown	unknown	gnl\|CDD\|223389
CP023271.1\|AVJ31359.1\|110531_113021_-\|helicase	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|224126
CP023271.1\|AVJ31357.1\|109102_109426_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288556
CP023271.1\|AVJ31369.1\|123681_125316_-\|TldD-protein	unknown	unknown	gnl\|CDD\|223389
CP023271.1\|AVJ31370.1\|127750_128365_+\|methylase	unknown	unknown	gnl\|CDD\|253548
CP023271.1\|AVJ31366.1\|120621_121605_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
CP023271.1\|AVJ31362.1\|114629_116441_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP023271.1\|AVJ31363.1\|116437_118603_-\|hypothetical-protein	gnl\|CDD\|372724	pfam13779, DUF4175, Domain of unknown function (DUF4175).	1.32685e-06
CP023271.1\|AVJ31358.1\|109515_110535_-\|exonuclease	gnl\|CDD\|379215	pfam13482, RNase_H_2, RNase_H superfamily.	4.20038e-48
CP023271.1\|AVJ31368.1\|122325_123660_-\|peptidase-C69	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	1.15643e-70
CP023271.1\|AVJ31364.1\|118599_119721_-\|hypothetical-protein	gnl\|CDD\|131281	TIGR02226, hypothetical_protein-transmembrane_prediction, N-terminal double-transmembrane domain. This model represents a prokaryotic N-terminal region of about 80 amino acids. The predicted membrane topology by TMHMM puts the N-terminus outside and spans the membrane twice, with a cytosolic region of about 25 amino acids between the two transmembrane regions. Member proteins tend to be between 600 and 1000 amino acids in length. [Hypothetical proteins, Domain].	5.88387e-15
CP023271.1\|AVJ31370.1\|127750_128365_+\|methylase	gnl\|CDD\|253548	pfam06080, DUF938, Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.	4.98366e-78
CP023271.1\|AVJ31367.1\|121618_122326_-\|DUF4159-domain-containing-protein	gnl\|CDD\|379342	pfam13709, DUF4159, Domain of unknown function (DUF4159). Members of this family are hypothetical proteins.	8.93222e-68
CP023271.1\|AVJ31353.1\|104250_105378_+\|short-chain-dehydrogenase	gnl\|CDD\|235853	PRK06701, PRK06701, short chain dehydrogenase; Provisional.	3.2019e-163
CP023271.1\|AVJ31356.1\|107073_109017_+\|transmembrane-BlaR-protein	gnl\|CDD\|310280	pfam05569, Peptidase_M56, BlaR1 peptidase M56. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. homologs to this peptidase domain, which corresponds to Merops family M56, are also found in a number of other bacterial genome sequences.	5.55077e-47
CP023271.1\|AVJ31354.1\|105374_106454_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	6.8457e-62
CP023271.1\|AVJ31365.1\|119717_120614_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.10016e-32
CP023271.1\|AVJ31355.1\|106683_107070_+\|methicillin-resistance-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	1.73347e-30
CP023271.1\|AVJ31369.1\|123681_125316_-\|TldD-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	1.89627e-101
CP023271.1\|AVJ31351.1\|102639_103701_+\|DNA-topoisomerase	gnl\|CDD\|226099	COG3569, COG3569, Topoisomerase IB [DNA replication, recombination, and repair].	4.0011e-98
CP023271.1\|AVJ35148.1\|125343_126927_-\|TldD-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	7.55501e-98
CP023271.1\|AVJ31359.1\|110531_113021_-\|helicase	gnl\|CDD\|224126	COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only].	0
CP023271.1\|AVJ31357.1\|109102_109426_-\|hypothetical-protein	gnl\|CDD\|288556	pfam11720, Inhibitor_I78, Peptidase inhibitor I78 family. This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.	2.37703e-07
CP023271.1\|AVJ31366.1\|120621_121605_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	8.25455e-95

>CP023271.1|AVJ31360.1|113220_113751_+|hypothetical-protein
MAVAKRATQVALLAGMLLAGIAHAQQTTPAAVPVPTPDPVPAPAVPPAADDAPVVLPPAQGNVTTLGEVRALKPEDDQPLDLYRFKNPMRAENNRFSRDWSEPPSPEQVSMGGGYIMMGVVKGVMAAAKGLNKITGGPDQIQSAIARPPPELSAEQQRRALQFCAQQDGCGAPPEK
>CP023271.1|AVJ31359.1|110531_113021_-|helicase
MAYELAKRTADAEQQLATRDGLPARDGALLSARLQRRYQDRITGSFAIPGREGRYAPIPDSVPPALTAALKARGIEQLYSHQAEAWEASQRGDHVAIVTPTASGKSLCYTLPVVSAAMQDKAKALYLFPTKALAQDQVAELLELNRAGDLGVKAFTFDGDTPGDARQAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLRYIVIDEVHTYRGVFGSHVTNVLRRLKRICAFYGVQPQFILCSATIGNPQAHAEALIEAPVTAITESGAPSGPKQVLLWNPPVINPDLGLRASARSQSNRIARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPPRIRAYRGGYLPTERRETERAMRAGNIDGIVSTSALELGVDIGSLDVVILNGYPGSVAATWQRFGRAGRRQQPALGVMVASSQPLDQYVVRHPDFFAEASPEHARIAPDQPLILFDHIRCAAFELPFRVGDGFGPIDPEVFLEALAETEVIHREGERWEWIADSYPANAVSLRAVADGNFVVVDRSDGRQQIIAEVDYSAAALTLYEGAIHMVQSTPYQVETLDWEGRKAYVTRTHVDYYTDSIDFTKLKVLDRFDGGLAGRGDSHHGEVHVVRRVAGYKKIRYYTHENIGYGPVSLPDQELHTTAVWWQLPQALLLRAFASKQDALDGFLGAAYALHIVATVAVMADARDLQKSVGNGDGTWIAIADQSGRGQLRGSDGEPGAVELLQEFVPTVYLYDNFPGGVGLSEPLWQRQAELVQRARELVQRCDCKAGCPACVGPVLAAQEQDETSPRALALRVLDLFDAQACQQVADVVVSTRDPMELIAP
>CP023271.1|AVJ31358.1|109515_110535_-|exonuclease
MSLSLDKLRLLRKQAGDPKAATPAAPTQQTPPALMAANDARQPPAERSVFAWVEQEIRHKPTGTATTTPAPAALRRPEVGSLHRLLGMRSRGGPAPARASAQDRQLPGNEIAPGLFLIESLLPQPIPAMPLSLAFAKREGEHVAARDLLFFDTETTGLAGGTGTRAFMIGAADWHVCPQRGEGLRIRQLLMSTMAAEEEMLAAFASWLQPHTVFCSYNGRSYDAPLLKTRYRLARQADPITALDHVDLLYPTRRRYRGTWENCKLSTIERQLLRVVREDDLPGSEAPAAWLRFLRGGDALNLRRVADHNHQDVVTLALLLQRLVREEQRERETLALVSG
>CP023271.1|AVJ31357.1|109102_109426_-|hypothetical-protein
MRRSPLLLLAAILPLAACSHAGGNASADAGSLPAKVSDGPQECRPEALDAFTGKTADEATIKKLVADSGARNARVVKPGMAVTMDFRQDRVTVQVDAQNRIERASCG
>CP023271.1|AVJ31356.1|107073_109017_+|transmembrane-BlaR-protein
MDTSMLIPMLERLGWTSLQTVLLVALVYLLCRALPALSAATRCRLWWLVSLQAVVGLLWSQPLQLAWLPAPDAVAMTTVDLAADAIYTMAPEASAHLLANTPMGDVGSTPVAWWALALAALWMSGVLLMALRTFGEWRRCRALLAASYPCEDQALVQALQLASDAHGLRRAPRLWMSDQVDAPQLVGPFRPVLLLPAGMNALQGDALDLALTHELQHLQRRDLQWGLLPALAQHLFFFHPLLRLAVREYAQAREEAVDAAVVGQHGASRHAYGRLLLQLGVAPQPHLGVASAAPSTTSLKRRLLSLQSHRACPRLLAVGLTLVVLAVGVAPMRLVAAPVPPAPPAPPRAVPAPPPPPAAPPAPAAPPAAAVPAEPADWAEPAEPAEPEEPADVNEDEEQDAGTHAHSQTTIVTHGQLDLGTPPQQAFVLVDHGQAFANAGMDDVMQARSRLGDGPALWFRQGDKRYVVRDPMLIQSLQRAYAGAVDLSRQQSELGRQQSVLGRQQGQLGREQGELGRLQGEEAREIALAAARAARSAINNRDINREAAAEAARATRGAVDDAAIARKAAAEAQRASQVARNQALQSERSREMSRLASQQAALGSQQAALGSQQAALGERQARLQAQAAKQAEQVIARALASGKAERL
>CP023271.1|AVJ31355.1|106683_107070_+|methicillin-resistance-protein
MRGKTIGDQELALLQYVDEQAPASVGEVASGYGEPRGLARSTVLTMMERLRAKGYLQRRQQQGVYRYQPTRGPESVLQGAVAQFVDNTLQGSVSPFVAYLSQRQKVSDNELAELEALVAELQSRRQED
>CP023271.1|AVJ31354.1|105374_106454_-|serine-hydrolase
MIISLLPFAAVSANQDQANDQTRRFIRQTMQEQRIPGLQIAVVKDGQVVLSETYGLANVENGVVATRSTRFPLNSATKSFTGVALAQLAQDGRVDLDAPIARYLDDLPESWRAVRVRQLLAHTSGLPDILDAEGLLGGGSEQDAWQAVRALPAEARAGERFQYNQTNYLLLARIIARQSGMPYERFLATGQFSTARMARTTFGDSYDLIPDAATMYSYLPRATDAKDATPRLSHWFYDMPPSLWAGGGILTTADDTARWLVALQEGRLLELRAVQQMWSAEHLNDGSAGDWAAGWPVFNTAPDLQVGGMGGARSAFIVYPERELAVVVLTNLVGANPQQFIPRIAGFYTAAPKGVATAR
>CP023271.1|AVJ31353.1|104250_105378_+|short-chain-dehydrogenase
MATTKKTPARRKASPKVRKGTQAAPAAAEATTSDRPRVVKTATRKAAASDPRAARVAARQRRLQDQEKAKDVRVAKKAAKKATRKTTTQAGPRRQPETMPAQQLAKPGHEHALELAPRFLAPDYVGSGKLQGMRAIVTGGDSGIGRAVAVLFAREGADVAVLHLDEAKDAELTRQHVEKEGGRCVVIAGDVRDPRFCNKAVKQVAKAFGGIDILVNNAAFQLHCERLEDLEDAHLQETLQTNIGGYIQMARAVLPHLGEGASIINTGSETGLFGSKALIDYSATKGAIHAFTKALASQLLPRGIRVNCVAPGPVWTPLNPADKQAKDVAEFGKDSDMGRPAQPEELSPAYVFLASPACASYISGVILPVMGGPRG
>CP023271.1|AVJ31352.1|103688_104033_-|hypothetical-protein
MKHAIATAAVCFALAACSSSPVTQVQPIDGVISGQCHTDKVRGAVGLAASGMTIERARVDSDSLHVQVTRGSRERSGNTASGAADPAAGAATEGGDRLTIETGRTNNITAIYCG
>CP023271.1|AVJ31351.1|102639_103701_+|DNA-topoisomerase
MPATPTPERQAARAAGLRYVDDTQPGFSRVRAGKGFSYRDADGHVVRDAATLQRIRALAIPPAYTAVWICARADGHLQATGRDARGRKQYRYHADWAAVRDAGKFDRTIAFGQALPALRRRLGRDLKRSGFPREKVLAVVVALLADTLVRVGNETYAQENKSYGLTTLRNRHLDLLRGGRVRMRFRGKSGQLQEVVVGDRRLGALVRSVQQLPGQALFQYRDDAGEVQPVDSGAVNDYLREVMGEDFTAKDFRTWGGTMAAVQAFAATELPEPASQRALAKAQREVVCQVAARLGNTPAVCRKAYIDPCVFAGWERGELTALAGLRGPRQWEQATLKVLRRARRLSRKAGQPQ
>CP023271.1|AVJ31362.1|114629_116441_-|hypothetical-protein
MSTSALNVWVAVALALIVLVASARQLRSPTQRRGRLIAVLTLQAAAAALLYVCLLPPSQRASLAGLVVIGAGADKTGALPTGGTRVLLPEATDMAGAARVPDLATALRRYPSSTVTLIGAGLAARDRDAALPADTRWQAPPAANGWIALQPPVDTAPGARFDVHAQARGVDRAQAELLDPAGAVVDRAPLAADGHVQLSGIARAEGRSVFQLRLLDAQGHVADSVPVPQQTLAAAPLRVLVRSAAPGAELKYLRRWATDAGIRVQVQAETGAGLSLGDGNVALDASTLARSDLLLLDERSLAALGAAQLAAVRQALRDGLGLLVRSTGAPSASARQRLRDLGLPVQGDAGSQVAAMPGEGDATMLQARRGPLAAGTLPTADGEDADRASHAAALPALEYLALQAADSRPLLQDRDGKPIGGWRAVGKGRIGLLPITDSWRWVLAGREDRHGELWSTVFASLARAQPGTEGPWPAQAQALAWAGERQSLCGVQAPLRAFGGRGDGVPLIVDSTTGTARCAGWWPRQAGWQRLQHGDRTQWRYVFDPKQAPALHRQAMTDATAQRLATAAPATAQASQRVPGPRWPWWLAFVLCASLLWWLERRR
>CP023271.1|AVJ31363.1|116437_118603_-|hypothetical-protein
MKALQQAWQRARRRRAAITLLLGLPWALASAALALRVSGFDIACVVATVALLIIAAAATMRARQLDRRWLQRRLDASGASEDSADLLFADGAALNPLQQRQRTHVLAALEHNLPELRPRWPRRAVALCWIGGIAVAVLALGWPHSGAPRPTAPASPQSSTKAGPLRLQSTRLRIDAPAYTGQPTRTQNALDAKVAADSRLSWSLRFDRAPSSAWLQFHDGRRLPLRERNGEWQAQDVARTPVLYRVVSQPALADTRLHRLDVVADRAPTVRVIEPATSLVLGTPGQRQWTLRFEASDDHGVSAQATLSITITQGSGENITFVRRSVALSGSGEAKARRFAHTLDLAALGAQPGNDVIAQLEVRDNHAPAAQVGRSSSVILRLPSAEAVLGAELEGRIKKTLPAYFRSQRQIIIDAEALIRERRSVAADTFVKRSDAIGVDQRILRLRYGQFLGEESEGAPKPPPTSDLPTSDTPAADAHDDDHEHGHGAEAGAHDEHGHDHGGAASGNDTPPVFGSATDVLSEYGHTHDHAEAATLLDPQTRATLKAALDQMWSAEGELRQGRPEQALPFAYKALAFIKQVQQAERIYLARVGPELPPIDESRRLSGDRAGLASRNLPLAARTPPDPAVVEAWQRLGDEDGTPDLDMLAAWQQRNNAFLPDALDLAAAIEQLRIDAGCNECRQRLRAQLWRALQRPLPQVMRRRAADAMGQRYLDALEAQP
>CP023271.1|AVJ31364.1|118599_119721_-|hypothetical-protein
MSLLFPLGLAALAAWLLPLLIHLARRHPYTPLDFAALRWLRAQVRPRQRIRFDDWPLLLVRLLLLAALALLLARPALTGPAPVPAAWTVVAPGLDATALRGSTDARNWHWLAPGFPTIDQPTPADAAALPSLLRELDAQLPAGTALTVHVPDPLPGLDGARLQLSREVQWQPHALAVTAPPHASPAPRLRTRSDAPAAALQWLGALQRAWSTQPLAAPLADDALPARGEIGVWTATDALPGTWQRWLQQGGTVLTAAKPPAGAPVLLRDADNAPLLWQQRIGQGRLLHLPGEWNVARNSALRDDGLPRDLLQALQPPSTPQLGDAQDQTPRQAALPAATPPLREPTAWLLLVIVLLFALERWMASSARRRAAP
>CP023271.1|AVJ31365.1|119717_120614_-|DUF58-domain-containing-protein
MIAGTPLLLPPDLRARLRALRLRPRLASGASGIGQHASRSRGAGLEFAQYRAYEPGDELRQIDWKLYARSDRFFVRESERESPITVWLLLDATASAGQSDHTAPGRSRLDHMRQLAACVVELTLQQGDRFGLLAINGEGLQLVPAAHGARQRDRVHLQLHSLQARGAWPAAERLRPLWERVRPGDLLLAIGDGFDDAGIVLLEQLASARREVMLLQVLTTDERDFPFDAGHRFRDPETGDELLGDGAAIRADYLQRFTQARAALQSRLQASGIACATGWLDQPLDQPLQALFGRRGGA
>CP023271.1|AVJ31366.1|120621_121605_-|MoxR-family-ATPase
MTSPDLDSLLPRLHALRSALAHAVVGQHTVVEQLLIGLLAGGHCLLEGAPGLGKTLLVRSLGQALELQFRRVQFTPDLMPSDILGTELLEEDHGTGHRHFRFQQGPIFTNLLLADELNRTPPKTQAALLEAMQERTVSYAGTTYTLPAPFFVLATQNPIEQAGTYPLPEAQLDRFLLHVLVDYPSEEEERQILEQTTGGATESVPKVMDAEAVVALQAAVRQVHVSPDVLAWITRLVRASRPGDGAPAAINQWVKWGAGPRAGQSLVLAAKARALLQGRFAATREDVQALAAPVMRHRLLLSFAAEAEQKRADDVVAALLQAVPFPG
>CP023271.1|AVJ31367.1|121618_122326_-|DUF4159-domain-containing-protein
MDRRACLRWLAAAASAAALPAWAQAGPRSSRYDFWFTRLQYDSGDWDVDARMPSNLITSLIDYTSLRVDPQERVVALADPRMLEAPFCYLAGHTLVEFNAAERQNFVRYVRNGGFVFVDDCNHDIDGLFATSFEAQMGRLFGPKALQKLPNSHALYRSFFRFPDGPPATSFELNGWGDDLVHDYLKGIEVDGRLGLLYSNKDYGCEWDYDWRNKRFLAEDNTRFGVNIVMYALNN
>CP023271.1|AVJ31368.1|122325_123660_-|peptidase-C69
MSIFTEAQAKAILDKVIALSKADECTAVLAGSINGNIRFALNNVSTSGIVDNTELAVTVAFGKRVGTASINEFDDAALQRVVRRAEDLARLAPENPEFMPAIGKQTYRPSPTFSESTAAIDPAFRAKVAADSIAPCRGNGLIAAGFLEDGQGFYATANSNGNFGYQRTTNFDYTCTVRTEDGRGSGWVGRNLKDAADFKADQDIRIAMRKATESQEAKALEPGKYTVILEPAAAAGLISFMMNFFSARSADEGRSFLSKKGGGNKLGEQVYDPRVNMHADPWHPDAPVLPWDNEGMPRERIAIIENGKVANLDYSRFWAQKQGKTAKATPGNLLMSGGEKSTAELVRGTQKGILVTRTWYIRMVDPQTVLLTGLTRDGTFYIENGQIKYPVKNFRFNESPVIMLNNIEELGKPVRVAGDESNFVMMIPPMKLRDFTFTSLSDAV
>CP023271.1|AVJ31369.1|123681_125316_-|TldD-protein
MHRRDFLALTGLTAGGLIVPSFFGKAIAAEQLQSSLDPALKKRLADAALQAARSAGATYCDVRIGRYLRQFVITREDKVQNVVNTESTGVGIRVIVNGAWGFAATNALSTADVARAAQQAAAIAKANAGVQTAPVQLAKAPGVGEVSWKTPIRKNAMEVPIKEKVDLLLDVNAAAMGAGASFVNSMLFLVNEQKYFASTDGSYIDQDVHRIWAPMTITAIDKASGKFRTREGLSAPMGLGYEYLDGAAAGKVLTPNGVVNYGSSYDMKEDAIAAAKQAQEKLKAPSVKPGKYDLILDPSHTWLTIHESIGHPLELDRVLGYEANYAGTSFATLDKREQHFQYGSDKVNIFADKTQPGSLGAVAYDDEGVKCKRWDLISNGKLVDYQTIRDQAHILGKTESDGCCYADSWSSVQFQRMANVSMAPGKSPLSVSDMIKDVENGIYIIGDGSFSIDQQRYNAQFGGQLFYEIKNGKITRMLEDVAYQIRTPEFWNACSAVADERDYRLGGSFFDGKGQPGQVSAVSHGSSTARFNGINVINTARSLG
>CP023271.1|AVJ35148.1|125343_126927_-|TldD-protein
MALPHSRLIAAEQLLAPVDPAKRRRLAEVALAAARSAKASYCDVRIGRYLNQSVITREHQVGNVTNRESSGVGVRVIVNGAWGFAATHQQTEAAVRTAVEQATAIARANASIQSRPVQLAPTPAVGEVRWQTPIRRNAMEVPIQDKVELLLALNAAALNAGADYINSTLFLVNEQKYFASSDGSFIDQDIHRIWLPFTATAIDKASGKFRTRAGLSSPMGMGYEFLDGDARGKVQLPGGITAYRDSYDPVEDAIAAARQAREKLKAPSVKPGKYDLVLDPSNLFLTIHENVGHPLELDRVLGYEANYAGTSFATLDKRDAGFRWGSDIVTFFADKTQPGSLGAVGYDDEGVKTQRWDLVRDGILVDYQATRDEAHILGRDASHGCSYADSWSSVQFQRMANVSLAPGRTPLSVEDMIKDVENGIYIHGRGSYSIDQQRYNAQFGGQLYYQIRNGKITGMVEDAAYQIRTPEFWNACTAICDERDFRLGGSFFDGKGQPGQVSAVSHGSSTTRFNGINIINTARSLGA
>CP023271.1|AVJ31370.1|127750_128365_+|methylase
MSSKPYSEACERNREPIAAALDPWMGDRHRVLEIGSGTGQHAAFFAERWPWLRWQPSDHPDHLPGIESWRAEAALLNLLPPVALQVELPPAPGLSLPKGSTFDAAFSANTLHIMSWEHVQALFAALPPLLRHGALLAVYGPFNYGGRYTSDSNAQFDAWLKARDPRSGIRDSEAVQALAADNGFTRLGDVAMPANNRLLLWRLG

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Crispr_ID: CP023271_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023271_5

527284-527406

Orphan

Consensus_repeat	Method
CGGCTCTGGTAGCTGCCGACCTTGGTCGGCGCTGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023271_5

>merge|CP023271|5|527284-527406|CRISPRCasFinder
CGGCTCTGGTAGCTGCCGACCTTGGTCGGCGCTGTGGCTGCGTGTCGACCAAGGTCGACACCTACCGGATCGGATCAGCGCTGCGCACGGCTCTGGTAGCTGCCGACCTTGGTCGGCGCTGTG

>CP023271|5|5|527284-527406|CRISPRCasFinder
CGGCTCTGGTAGCTGCCGACCTTGGTCGGCGCTGTG	GCTGCGTGTCGACCAAGGTCGACACCTACCGGATCGGATCAGCGCTGCGCA
CGGCTCTGGTAGCTGCCGACCTTGGTCGGCGCTGTG

Protein	Signature genes	Signature genes Name	Protein_function
CP023271.1\|AVJ31700.1\|520150_520660_-\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ31702.1\|521735_522590_-\|flagellar-motor-stator-protein-MotA	unknown	unknown	gnl\|CDD\|181655
CP023271.1\|AVJ31704.1\|523297_523672_+\|classical-arabinogalactan-protein-4	unknown	unknown	gnl\|CDD\|237030
CP023271.1\|AVJ31710.1\|528304_530293_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|236842
CP023271.1\|AVJ31716.1\|533958_535167_-\|beta-ketoacyl-[acyl-carrier-protein]-synthase-I	unknown	unknown	gnl\|CDD\|181184
CP023271.1\|AVJ31711.1\|530337_530628_+\|DUF3247-domain-containing-protein	unknown	unknown	gnl\|CDD\|371627
CP023271.1\|AVJ31706.1\|524299_524779_-\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
CP023271.1\|AVJ31699.1\|519861_520137_-\|DUF4031-domain-containing-protein	unknown	unknown	gnl\|CDD\|379076
CP023271.1\|AVJ31714.1\|532317_533019_+\|16S-rRNA-pseudouridine(516)-synthase	unknown	unknown	gnl\|CDD\|211327
CP023271.1\|AVJ31701.1\|520793_521732_-\|motility-protein-MotB	unknown	unknown	gnl\|CDD\|236365
CP023271.1\|AVJ31717.1\|535166_535682_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	unknown	unknown	gnl\|CDD\|179953
CP023271.1\|AVJ31713.1\|531250_532321_+\|16S-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|368316
CP023271.1\|AVJ31715.1\|533015_533699_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
CP023271.1\|AVJ31709.1\|527491_528058_-\|DUF3016-domain-containing-protein	unknown	unknown	gnl\|CDD\|378666
CP023271.1\|AVJ31712.1\|530830_531094_-\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ31703.1\|522691_523159_-\|peptide-methionine-(R)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|234692
CP023271.1\|AVJ31708.1\|526211_527282_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
CP023271.1\|AVJ31705.1\|524089_524242_+\|lana-protein	unknown	unknown	unknown
CP023271.1\|AVJ31707.1\|524928_526233_+\|D-amino-acid-dehydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|234819
CP023271.1\|AVJ31718.1\|535873_536968_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035

Protein	Function_ID	Function_description	E-value
CP023271.1\|AVJ31702.1\|521735_522590_-\|flagellar-motor-stator-protein-MotA	gnl\|CDD\|181655	PRK09110, PRK09110, flagellar motor stator protein MotA.	2.39312e-164
CP023271.1\|AVJ31704.1\|523297_523672_+\|classical-arabinogalactan-protein-4	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.000501395
CP023271.1\|AVJ31710.1\|528304_530293_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	3.00779e-65
CP023271.1\|AVJ31716.1\|533958_535167_-\|beta-ketoacyl-[acyl-carrier-protein]-synthase-I	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
CP023271.1\|AVJ31711.1\|530337_530628_+\|DUF3247-domain-containing-protein	gnl\|CDD\|371627	pfam11607, DUF3247, Protein of unknown function (DUF3247). This family of proteins is the protein product of the gene XC5848 from Xanthomonas campestris. The protein has no known function however its structure has been determined. The protein adopts a Lsm fold however differences with the fold were observed at the N-terminal and internal regions.	2.80137e-23
CP023271.1\|AVJ31706.1\|524299_524779_-\|AsnC-family-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	3.14081e-70
CP023271.1\|AVJ31699.1\|519861_520137_-\|DUF4031-domain-containing-protein	gnl\|CDD\|379076	pfam13223, DUF4031, Protein of unknown function (DUF4031). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 91 and 130 amino acids in length. There is a conserved HYD sequence motif.	8.76064e-33
CP023271.1\|AVJ31714.1\|532317_533019_+\|16S-rRNA-pseudouridine(516)-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	5.75518e-75
CP023271.1\|AVJ31701.1\|520793_521732_-\|motility-protein-MotB	gnl\|CDD\|236365	PRK09041, motB, motility protein MotB.	8.11969e-163
CP023271.1\|AVJ31717.1\|535166_535682_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	2.17929e-120
CP023271.1\|AVJ31715.1\|533015_533699_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	7.73758e-60
CP023271.1\|AVJ31709.1\|527491_528058_-\|DUF3016-domain-containing-protein	gnl\|CDD\|378666	pfam11454, DUF3016, Protein of unknown function (DUF3016). This is a bacterial family of uncharacterized proteins.	5.63162e-64
CP023271.1\|AVJ31713.1\|531250_532321_+\|16S-rRNA-methyltransferase	gnl\|CDD\|368316	pfam05175, MTS, Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.	4.88013e-66
CP023271.1\|AVJ31703.1\|522691_523159_-\|peptide-methionine-(R)-S-oxide-reductase	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	3.35537e-77
CP023271.1\|AVJ31708.1\|526211_527282_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
CP023271.1\|AVJ31707.1\|524928_526233_+\|D-amino-acid-dehydrogenase-small-subunit	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
CP023271.1\|AVJ31718.1\|535873_536968_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0

>CP023271.1|AVJ31708.1|526211_527282_+|alanine-racemase
MRPARALIDLGALRSNYRLARELGGGKALAILKADAYGHGAVRCAQALEGEADGFGVATIEEALELRQAGIRAPILLLEGIFEPSEMALVAEHDLWFSVGSPWQLEALVAFDSPRPLTVWLKLDSGMHRLGLDVPGFRAAHARLSALPQVARIVMMTHLARADELDSERTREQAATFVEAIDGLEGETSICNSPALLGWPDVRSDWVRPGLMLYGANPLPDNSELTARLRPVMTMQSKVFAERWIEAGEPVGYGARFVAKARTRVGVVALGYADGYPQFAPNGTPVLIDGQPGGLIGRVSMDMLTVDLTAHAQAGVGSVVELWGTAPTLSELAPRCGVSAYQLPCGVKRVARIYQD
>CP023271.1|AVJ31707.1|524928_526233_+|D-amino-acid-dehydrogenase-small-subunit
MRVLVLGSGVIGTTSAWYLRQAGFEVTVVDRQPGPALETSFANAGQLSFGYTSPWAAPGVPKKAIGWLFEKHAPLAIKPGMDLAQYRWLWQMLRNCTHERYAINKARMVRMSEYSRDCLNELRAQIGIDFEGRDLGTTQLFRTQQQLDASAQDIEILAQYGVPYEVLDRAGIIKAEPALAHVDGLVGALRLPRDQTGDCQLFTRRLAQMAAEAGVEFRYDQDITGVESDGDRITGVRIGGKLETADRFVVALGSYSPGLVAPLGMRLPVYPLKGYSLTLPITDPAMAPTSTILDESYKVAVTRFDNRIRVGGMAEVAGFDLSLSPRRRETLELVVRDLYPKGGDLAKAEFWTGLRPATPDGTPVIGATPFRNLFLNTGHGTLGWTMACGSGRYLADLMSARQPQISTEGLDIFRYGQYRHAPQHENRTCVLPAR
>CP023271.1|AVJ31706.1|524299_524779_-|AsnC-family-transcriptional-regulator
MATRPRELDKIDRKILRILQAEGRISFTELGERVGLSTTPCTERVRRLEREAVITGYHAHLDPSALKASLLVFVEISLAYKSGDIFEEFRRSALKLPNVLECHLVSGDFDYLLKARISEMASYRKLLGSTLLTLPHVRESKSYIVMEEVKETWALPIPD
>CP023271.1|AVJ31705.1|524089_524242_+|lana-protein
MANQQNRHPGKEQQGKTPQEQQRQQQQQQQPNEQQKKNPQQGSMKNPQQR
>CP023271.1|AVJ31704.1|523297_523672_+|classical-arabinogalactan-protein-4
MKPRLVLLLSALLPLLAQAQVPTGSPTATRSSATVAPPPVAPRPQASRPQPQVLPSPQPAQPIRSTGPAQVTPTPAPALPDKVYDRNGRIVPGVKPVGPNRVFDSRTGRYYDSVPTGDGQQIKR
>CP023271.1|AVJ31703.1|522691_523159_-|peptide-methionine-(R)-S-oxide-reductase
MSAFDLTPPTATQTDALVAGLSAEERRVLLQHGTEAPFCGVFLDNKREGVYCCRLCALPLFRSSTKFDSGTGWPSFFAPFDPSHVREIRDTSHGMVRTEITCARCGSHLGHVFPDGPPPTYERHCLNSVSLSFTGNGEPWPDPLQRGGAEAGVAG
>CP023271.1|AVJ31702.1|521735_522590_-|flagellar-motor-stator-protein-MotA
MLIIVGFLVVIISVLGGYLGAHGRLGALWQPYELVIIGGAALGAFLVGTPAKTVKQTLQAMVGVFKGPRYKQQDYIDVLSLVYELLNKARREGFMALEDHVERPAESALFGNYPKVQADHHLIDFITDCLRLMIGSNIEPHELEPLLELELEKHHAEAMAPSQVLTKVADGLPGFGIVAAVLGIVITMGSIGGDIVEVGGHVAGALVGTFLGILLGYGFVGPMASAMEARAEQDSRIYESVKTALLACLRGYNPKIALEFARKTLPSNVRPAFSDFEQHLKTVK
>CP023271.1|AVJ31701.1|520793_521732_-|motility-protein-MotB
MAETKPTVIVRRVKKAGHAAHHGGSWKVAYADFVTAMMAFFLVLWLMASTSKPERAAISEYFRNPSPLVGSSATPAPGMAGPGGASTSMIKLGGATDVSRGNSNDPFQNQQKSIPQPVDEQQRDKQQLEALMKELQEAISRSQALEPFKDQLLLDLTPEGLRIQIVDKQNRPMFDLGSATLKPYTQQILHELAEYLNHVPNRISLTGHTDITAYSAARGYGNWELSADRANAARRALIDGGLEDSKITRVVGLSSSVLFDKADPQNPINRRISIVVMTKAAEEAALAGAGPQVGLSATTVDPDVQAAQGSGK
>CP023271.1|AVJ31700.1|520150_520660_-|hypothetical-protein
MSKLSKAKRDKRKKQQTKRPFLRLNAQQQVQNHAVLVNEDGQAVAAIGLQGREWLLAIGGQTMGNADNPVPMLAMLKHLSNVQEAEGRKVTLEYSELMQKLLDTLAEEAGQTAEEYLDKLVAEFASEQAEDAAAEGEASDEAAADTAGAEGAADAEATPAADADGKPQA
>CP023271.1|AVJ31699.1|519861_520137_-|DUF4031-domain-containing-protein
MSVYVDDAVHPWRGQRWAHLMADTLAELHAMAAQLGIPPRAFQNKASGAHYDVTAELRAQALALGAVAISRHVDRAQVKAVIANARAQYQP
>CP023271.1|AVJ31709.1|527491_528058_-|DUF3016-domain-containing-protein
MKGSLSTALLLAGMLAVGSVAAAPRTVTAPDAPRALQADGPVSVQWNDPAKFTEIRQSTNRFEAERGDWVQQLARYVQTSAAKPLQAGQTLEVTLVDVKRAGDYEPWHGPRGRDIRIMRDIYPPRITLQYTLKDASGRIIDEGDARLSDSGYLHNIGLKSDTDPLRYEKRLIDDWVKRQLTSRVTAAR
>CP023271.1|AVJ31710.1|528304_530293_+|hybrid-sensor-histidine-kinase/response-regulator
MMVPTPETDLHHGVLERIHAGFCVIQVLFDGDEAIDYRFLEVNDAFERHTGLKDACGKRMSTLEPHHEGDWFRIYGEVARTGRPAQFEMDARALGRTFAVDAVRVGQPGEDKVGILFFDVTARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGDENRVPEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDSTSPLYKGLGVIANSATAQKRLISDMLDLSSMLLGKVQLEVEVLDLRDQLNEAMGAQELVAEGKALDVTLQLPAQPCQVLGDATRLQQVFWNLLSNAIKFTPAEGRIDVQLQADGNYWTITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGSVSAASDGHGHGSTFTVRLPQHLPDAERRPLREVVSGPILEPMVVEPYPLRGLHVLAVEDQPEVLEYLRRMLEEQGASVSAASSAGEALALLADNGHLQYQVLLTDIGMPGMDGYGLVSTLRQDLGVDAAALPAVAVTALARADDRRRALASGFQEHVAKPYSVAQLVGVVRRVQATRGDSLLH
>CP023271.1|AVJ31711.1|530337_530628_+|DUF3247-domain-containing-protein
MSRIAPRIHTDSAQIARLEALLPQLQGETEVQLTLHDGRRLLGTVAVQPTLQQYRNDAGDEGSNGQLRLDDLDAPVQQHHVWLDEIASIRRLPPRL
>CP023271.1|AVJ31712.1|530830_531094_-|hypothetical-protein
MRALFVGGVVDNSEMDLEGSHPPVHYPEDTGGGHSRYRLHQVGHGADGSVAYAVYGAPDLADDEVTRVAEERAYARRFEATATLFEH
>CP023271.1|AVJ31713.1|531250_532321_+|16S-rRNA-methyltransferase
MASSDDAPLQTLFLPFSSGALRWPEGPVAFLRARDGWPLREQAGGREVDCEQSFAPFAQPLQQAAGWTVSGQLDDVAGRGRYPLVLVLPPRQREEARALFARALALVAEGGRIVACQHNNEGARSGEGDLKQLAGLGGSLTKNHCRVFWTAPLQGQHDVDVAKRWGALDAVRPIVGGRFLSRPGVFAWDRIDPASALLAEHLPADLAGRAADLGAGYGYLSRELLERCPKITALDLYEAEKRALDLAELNLAPPPRPVPLRFLWRDVTAGIEPDYDVIISNPPFHTPSRADRPDIGQRFIAVAAQALRPGGRLYVVANRHLPYEYTLNESFGAVRVVAERDGFKLVEAVKGKGKGR
>CP023271.1|AVJ31714.1|532317_533019_+|16S-rRNA-pseudouridine(516)-synthase
MKLVKHIANLGYGSRKQVQWMFREGRVTDADGEVLYADDQVAHEAVRVDGEPLDPPVGLSLAMYKPAGYTCSTKDKGRLIYDLLPPRFRDRDPVLSTVGRLDRETSGLLLLTDDGNLLHRIISPKSKLPKVYEVELAEDLRGDEVALFASGTLMLEAEKTPLLPAELQVLGPRKARLVLHEGRYHQVRRMFAAAGNHVQALHRSRVGGLDLQGLAEGQWRLLTSTDLDTLFAP
>CP023271.1|AVJ31715.1|533015_533699_+|HAD-family-phosphatase
MTSIAALPFLPDAVIFDMDGLMIDSERVSLACWSEAAEEFGLPLDASFFVRMVGLGDRDSQALLRQQGIEDSMIEAMAARCHDLYEERTQTGLPLRPGILELLELLKAHAVPRAVATTTRQPRANRKLAAAGLLPYFDAVITSGDVARPKPAPDIYLLAAQRLGQAPERCLALEDSPAGTRAALAAGMTVIQVPDLVHPDEELRALGHRIVGSLVDAHALLLPLLPR
>CP023271.1|AVJ31716.1|533958_535167_-|beta-ketoacyl-[acyl-carrier-protein]-synthase-I
MRRVVITGMGITSCLGNDLDTVSAALRESRAGITALADHAEAGLRSQVGGRVDLDLDALIDRKQKRFMSDAAAFAYLAMADAITDAGLTPEQVSGLRTGLIAGSGGGSSEWQVGAVDLLRSRGVRKVGPYMVPRTMCSTVSACLATAFQIKGVSYSLSAACATSAHCIGAAADLIRHGAQDIMFAGGGEDLHWSMSVMFDAMGALSTSFNDTPASASRPYDKDRDGFVIAGGGGMLVLEDYDHAVARGAHIHAELIGYGVTSDGADMVAPSGEGAVRCMKMALQNVDRPLDYLNTHGTSTPLGDVTELGAIREVFGDAIPPLSSTKALSGHSLGAASVHEAIYCLLMMRDGFVAGSANIGELDPRVEGFPILRESREQKLDTVMSNSFGFGGTNAALVFGRV
>CP023271.1|AVJ31717.1|535166_535682_-|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA
MTRLHAFNRDQLLASARGELFGAAAGRLPNDPMLMFDRITEIREDGGPHGKGMVRAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLTGFFLTWLGAPGKGRALGCGEVKFTGQVLPDAKLVRYEIDISRVINRKLVMAQSDARMYVDDREIYNARDLRVGLFTETGSF
>CP023271.1|AVJ31718.1|535873_536968_+|DNA-polymerase-IV
MNALRKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPALRAERLCPDAVFVPPDFARYKAVSRHVREIFLRHTDLVEPLSLDEAYLDVTEPKSGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVNRVPGVGKVMEGKLAARGIVTCGDLRQWTLPDLEDAFGSFGRSLYNRARGVDERPVEPDQQVQSISSEDTFAEDLLLEDLSEAIVQLAGKTWQATRKTERIGHTVVLKLKTAQFRILTRSFTPERPPESMEELRDIALSLRARVDLPADTRYRLVGVGLGGFREKEAVVQGELFEHTTNDSPRT

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Crispr_ID: CP023271_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023271_6

1041102-1041209

Orphan

Consensus_repeat	Method
GTGGGTGCCGACCGTTGGTCGGCACGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023271_6

>merge|CP023271|6|1041102-1041209|CRISPRCasFinder
GTGGGTGCCGACCGTTGGTCGGCACGGATGCCCCCATGGCCGTTCATCCACGCATGGCGTGGATCTACTGGAGATGGCGGGTGGGTGCCGACCGTTGCTCGGCACGGA

>CP023271|6|6|1041102-1041209|CRISPRCasFinder
GTGGGTGCCGACCGTTGGTCGGCACGGA	TGCCCCCATGGCCGTTCATCCACGCATGGCGTGGATCTACTGGAGATGGCGG
GTGGGTGCCGACCGTTGCTCGGCACGGA

Protein	Signature genes	Signature genes Name	Protein_function
CP023271.1\|AVJ32119.1\|1033144_1033654_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236878
CP023271.1\|AVJ32118.1\|1032457_1033030_-\|septum-formation-inhibitor-Maf	unknown	unknown	gnl\|CDD\|234855
CP023271.1\|AVJ32120.1\|1033761_1033956_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|234901
CP023271.1\|AVJ32130.1\|1043003_1043960_+\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|181551
CP023271.1\|AVJ32129.1\|1042341_1043007_+\|dTMP-kinase	unknown	unknown	gnl\|CDD\|234814
CP023271.1\|AVJ32136.1\|1047268_1047736_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377754
CP023271.1\|AVJ32128.1\|1041283_1042345_+\|aminodeoxychorismate-lyase	unknown	unknown	gnl\|CDD\|224475
CP023271.1\|AVJ32122.1\|1035098_1035881_+\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|226168
CP023271.1\|AVJ32127.1\|1039710_1041075_+\|aminodeoxychorismate-synthase,-component-I	unknown	unknown	gnl\|CDD\|236371
CP023271.1\|AVJ32125.1\|1037970_1038210_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
CP023271.1\|AVJ32124.1\|1037074_1037818_+\|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl\|CDD\|187594
CP023271.1\|AVJ32135.1\|1047069_1047285_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|227337
CP023271.1\|AVJ32123.1\|1036047_1036992_+\|[acyl-carrier-protein]-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
CP023271.1\|AVJ32137.1\|1047738_1050180_-\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|273790
CP023271.1\|AVJ32134.1\|1046005_1047079_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|222877
CP023271.1\|AVJ32131.1\|1043956_1044310_+\|pilus-assembly-protein-PilZ	unknown	unknown	gnl\|CDD\|225756
CP023271.1\|AVJ32126.1\|1038355_1039618_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-II	unknown	unknown	gnl\|CDD\|235987
CP023271.1\|AVJ32132.1\|1044553_1044982_-\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ32121.1\|1034047_1035025_+\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
CP023271.1\|AVJ32133.1\|1045542_1045923_+\|tautomerase-family-protein	unknown	unknown	gnl\|CDD\|379645

Protein	Function_ID	Function_description	E-value
CP023271.1\|AVJ32119.1\|1033144_1033654_+\|hypothetical-protein	gnl\|CDD\|236878	PRK11193, PRK11193, 23S rRNA accumulation protein YceD.	5.56434e-30
CP023271.1\|AVJ32118.1\|1032457_1033030_-\|septum-formation-inhibitor-Maf	gnl\|CDD\|234855	PRK00884, PRK00884, Maf-like protein; Reviewed.	6.69103e-95
CP023271.1\|AVJ32120.1\|1033761_1033956_+\|50S-ribosomal-protein-L32	gnl\|CDD\|234901	PRK01110, rpmF, 50S ribosomal protein L32; Validated.	4.13245e-21
CP023271.1\|AVJ32130.1\|1043003_1043960_+\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|181551	PRK08769, PRK08769, DNA polymerase III subunit delta'; Validated.	0
CP023271.1\|AVJ32129.1\|1042341_1043007_+\|dTMP-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	6.02972e-90
CP023271.1\|AVJ32136.1\|1047268_1047736_-\|phage-tail-protein	gnl\|CDD\|377754	pfam06995, Phage_P2_GpU, Phage P2 GpU. This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein, which is thought to be involved in tail assembly.	6.18031e-41
CP023271.1\|AVJ32128.1\|1041283_1042345_+\|aminodeoxychorismate-lyase	gnl\|CDD\|224475	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism].	1.35988e-138
CP023271.1\|AVJ32122.1\|1035098_1035881_+\|serine/threonine-protein-phosphatase	gnl\|CDD\|226168	COG3642, COG3642, Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms].	0.00450612
CP023271.1\|AVJ32127.1\|1039710_1041075_+\|aminodeoxychorismate-synthase,-component-I	gnl\|CDD\|236371	PRK09070, PRK09070, aminodeoxychorismate synthase component I.	0
CP023271.1\|AVJ32125.1\|1037970_1038210_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	7.11963e-35
CP023271.1\|AVJ32124.1\|1037074_1037818_+\|3-oxoacyl-ACP-reductase-FabG	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.3404e-123
CP023271.1\|AVJ32135.1\|1047069_1047285_-\|phage-tail-protein	gnl\|CDD\|227337	COG5004, COG5004, P2-like prophage tail protein X [General function prediction only].	3.22996e-17
CP023271.1\|AVJ32123.1\|1036047_1036992_+\|[acyl-carrier-protein]-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	3.58093e-124
CP023271.1\|AVJ32137.1\|1047738_1050180_-\|phage-tail-tape-measure-protein	gnl\|CDD\|273790	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions].	6.01216e-13
CP023271.1\|AVJ32134.1\|1046005_1047079_-\|phage-tail-protein	gnl\|CDD\|222877	PHA02561, D, tail protein; Provisional.	2.07974e-83
CP023271.1\|AVJ32131.1\|1043956_1044310_+\|pilus-assembly-protein-PilZ	gnl\|CDD\|225756	COG3215, PilZ, Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion].	3.05824e-60
CP023271.1\|AVJ32126.1\|1038355_1039618_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-II	gnl\|CDD\|235987	PRK07314, PRK07314, beta-ketoacyl-ACP synthase II.	0
CP023271.1\|AVJ32121.1\|1034047_1035025_+\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	0
CP023271.1\|AVJ32133.1\|1045542_1045923_+\|tautomerase-family-protein	gnl\|CDD\|379645	pfam14552, Tautomerase_2, Tautomerase enzyme.	4.232e-41

>CP023271.1|AVJ32127.1|1039710_1041075_+|aminodeoxychorismate-synthase,-component-I
MTHAPLIHPLPHPIDLLALQQRDPARFPLLMESTASGTAQGRWSLLLAAQGDTLQLDADGQVRDQHGAVQPGSFLQALDHAWQAQRLPHDGGHALPFRGGWALMLDYEVASQVEPVLPARARDDGRPTALALRCPAAVLHDHQADASVLIAEAGEQALLDSLVALVAGELPPAGQGWQPPQSVSEDEPQRFTEGVRRVIDYLRAGDVFQVNLSRRWSAHFAAPVSPQALYAQLRRANPAPFAGLFSAHGRHVVSSSPERLVSVHGGHAQTRPIAGTRPRFEGDDDAARIQELVGHPKERAEHVMLIDLERNDLGRICLPGTVVVDELMTVESYAHVHHIVSNVSGQLRADVTPGEVIAATFPGGTITGCPKVRCMQIISELEQVPRGAYTGAFGWLNRDGDLDLNILIRTAEVDGNEVSFRTGAGIVVDSDPDKELDETRAKARGLLRALGQQG
>CP023271.1|AVJ32126.1|1038355_1039618_+|beta-ketoacyl-[acyl-carrier-protein]-synthase-II
MKRRVVVTGLGMVSPLGNDLASSWEGITHGRSGIGPLTNVSDAYLERFTTKIAGEVKGFDITADNELFGKYRVSGKDAKKMDPFIHYGLGAAFMALHDSGLEITDANADRIGAIVGAGIGGLLGIEEQTIEFHEGKKISPFYVPKTIINMLPGQLSIISGLKGPSFSAVSACATSNHSIGTAMRMIQYGDADVMVAGGAERGSSPTALGGFCAMKAMSTRNDAPEQASRPWDKDRDGFVLGDGAGILILEEYEHAKARGAKIYCELAGFGASSDAYHMTAPSENGEGAARCMTMAMKDAGVTPEQVGYLNAHGTSTPLGDLGETMAMKTAFGDHAYKMMVSSTKSMTGHLLGAAGGVEAIFSVLAMRDNVIPPTINLQQPGEGCDLDYVPNEARQAKVDVVMSNGFGFGGTNGTLIFKRV
>CP023271.1|AVJ32125.1|1037970_1038210_+|acyl-carrier-protein
MSTIEERVKKIVIEQLGVKEEEVTNSASFVDDLGADSLDTVELVMALEEEFECEIPDEEAEKISTVQAAITYITAHVKA
>CP023271.1|AVJ32124.1|1037074_1037818_+|3-oxoacyl-ACP-reductase-FabG
MSKPLQGEIALVTGASRGIGAAIADLLAAQGATVIGTATTDSGAAAIGERLAAHGGHGRALNVTDAAALDAVLDGIAKEFGPISILVNNAGITRDNLLMRMKEDDWASIIDTNLTSVFRTSKAVMRGMMKARKGRIINIASVVGVTGNAGQANYAAAKAGIIGFSKSLAKEIGSRGVTVNVVAPGFIDTDMTKALPEEARTALIGDIALERLGSPEDIAHAVAFLASPAAGYITGETLHVNGGMYMP
>CP023271.1|AVJ32123.1|1036047_1036992_+|[acyl-carrier-protein]-S-malonyltransferase
MTVSTLAFVFPGQGSQSVGMLAELAELHPQVREAFTEASDGAGVDLWALSQGGPEEMLNRTEYTQPALLAASIGAWRAWSAVGGPRPSVLAGHSLGEYTALVAAGALSLHDGAHLVRLRGQLMQDAAPAGVGAMAAVLGAEDQLVLDVCAEAAGSQVVVPANFNSPGQIVIGGDAAAVDRALALLAEKGVRKAVKLAVSVPSHTPLMREAANRLAEVMAGLSWQLPQLPVVQNVDAKVHDGVDAIRAALVQQLYQPVQWTGCVQALAARGVTRIAECGPGKVLTGLVKRIDKAIDGRSLATPGDFETARETWSA
>CP023271.1|AVJ32122.1|1035098_1035881_+|serine/threonine-protein-phosphatase
MVEPIVIEGQRAWLKQYGEGSRAVALGLLNFVARRFHLDALRPPPHRGGDAARETEARRLAELQAQGVNVPAVIGSGHAALVIGDNGSSFNTCLREADDAGRDRLVAAAMQAIAEAHARGAYFGQPLPRNLTWDGQNVGFIDFEEDPLEVMDLAEAQARDWLMFGYGVAKYYADRPESLQAMMAEAMNGVQAPVRAHVHAVSGRLQRLARVCMKLGRSARALAHSIFITHGATTLGLLMVVGLCMDWFADGELDILQLLC
>CP023271.1|AVJ32121.1|1034047_1035025_+|ketoacyl-ACP-synthase-III
MSKRIYSRIAGTGSYLPEKVLTNADLEKMVETSDEWIQTRTGIRERHIAAEGETTSDLGYQAALRAIEAAGIDASQLDMIVVGTTTPDLIFPSTACLIQAKLGVSGCPAFDVNAACSGFVFALSVADKFIRSGDARHVLVIGTETLTRIVDWEDRTTCVLFGDGAGAVVLKADEETGILSTHLHSDGSKKELLWNPVGVSVGFGEGNNGGGTINMKGNDVFKYAVKALDSVVDETLDANGLTKSDLDWLIPHQANLRIIEATAKRLEMSMDQVVVTVDKHGNTSSASVPLALDAAVRSGRVERGQLLLLEAFGGGFTWGSALLRY
>CP023271.1|AVJ32120.1|1033761_1033956_+|50S-ribosomal-protein-L32
MAVQKSRVTPSRRGQRRSHDALSAKQLSTDPTTGEVHLRHHITADGFYRGKKVIQTKSSAVQED
>CP023271.1|AVJ32119.1|1033144_1033654_+|hypothetical-protein
MSANVPETLDAWRMVVARRRFDGQVPLAELTRLQGLVADTEGECNYSLEFGRDEILRVSYVELTIDTALPLTCQRSMQRFLLPVKMTQRLGLIREEDEESSLPEEYEPLLVPEDGQLRPLDLVEDELVLAVPVVPLSPYGEAVDKDWAPTEEEIEKANPFAALAALKKQ
>CP023271.1|AVJ32118.1|1032457_1033030_-|septum-formation-inhibitor-Maf
MPALVLASTSRYRRDLLDRLGLPFDCARPQVDETREADEAPLALAARLASAKAAEVAARHPGSWVIGSDQVADLNGQPLGKPGTVEAACAQLAAMSGQTVRFHTAVSLIRDGELLSAMDSTQVRFRALQAPEIARYVAIEQPLDCAGSFKCEGLGISLFEAIDNQDPTALIGLPLIALCGLLRRAGFAVP
>CP023271.1|AVJ32128.1|1041283_1042345_+|aminodeoxychorismate-lyase
MAGAKRGCLLVVTLLLVLAAIVAGAGAWFFYKQSQFADVPLTPSADSVVIASGDGMNSVLRKLREAGVDEGQDTQWQLLARQLDAAGKLKVGEYALSKDLTPRELLLRMRAGKVLQHRVTIIEGWNIRQLRAALKRADPLLHTTDTLDDAALMDRLGFAGQHPEGRFLPETYVYQRGDSDLDVLKRAHGAMEKALDEAWESRAPDLPINTPYELLTLASIIEKETALASERPQIAGVFMRRLKIGMRLQTDPTVIYGIGAAYDGNIRRRDLTTDTPYNTYTRSGLTPTPIAMPSRDALMAAAQPAPGDALYFVAVGDGSGAHVFSPSLDKHNAAVARYLQKLRQQRTQETPAQ
>CP023271.1|AVJ32129.1|1042341_1043007_+|dTMP-kinase
MSSALLRHPRFVSLEGGEGAGKTTAINAIRECLRRHGHEVVLTREPGGTPLAERIRGLVLKPDAEIAAEPLSAEAELLLVFAARAQHVRQVIQPALQRGAYVLSDRFTDSSYAYQGGGRGLDPQWIADLERRAVGLLPGLTLLLDVDVAVGRARANGRDLWPDRIESEQDDFFQRVREVFRGRAQQDPQRFALVDAGQVQERVAADVVARVERWLQQGEGA
>CP023271.1|AVJ32130.1|1043003_1043960_+|DNA-polymerase-III-subunit-delta'
MSTFSPWQQRAFDQTVAALDADRLGHGLLICGPAGLGKREVALALADHVLARGDASHATRTRQLIAAGTHPDLQLISFIPNKSGDKLRTEIVIEQVREISNKLALTPQYGVAQVVIVDPADAINRSAANALLKTLEEPQPGRYLWLISSDPARLPQTVRSRCQRLEFKLPPREEALAWLQQQGHSDAAAHEALDAARGHPGQADNWLREDGLSLRREVGRELEQLAAGKTGAVELAQKWCADDNAALRLRFAADLALAQASTDALTTPERLHKLAAWFDAANRTRDLLRTTVRADLAVVELLLAWNKVNERPAARGNR
>CP023271.1|AVJ32131.1|1043956_1044310_+|pilus-assembly-protein-PilZ
MSASNARQGILSLAVKDKAALYSAYMPFVKNGGIFVPTPKRYFLGDEVFLLLTLPDSSERLPVAGKVIWVTPAGAQGNRTAGIGVQLADGQEGETVRHKIETILAGLTGSDKPTHTM
>CP023271.1|AVJ32132.1|1044553_1044982_-|hypothetical-protein
MTNNTVLIPRLHALIGDIASNVPEDLAREIECALKEQQFPPAQPMFFTFLDAIRRGEGEDGQPRTTQMLNAQTPASLGRSLSALTAVLDLLHAAERARVDGNTDGQIGDFHRNGLLLAARQIAHAAQTGLGDAITAVANKPG
>CP023271.1|AVJ32133.1|1045542_1045923_+|tautomerase-family-protein
MPLARIDLRKGKSVEYRQRVGEAIYQAMRSVGVPENDRFQIFQEHDAGTLVYDPGYLGIARTDDFICIQITWNDGRTLEQKKALYAGIADGLHAAVGIRREDVFINLVEVKRENWSFGNGVAQYVS
>CP023271.1|AVJ32134.1|1046005_1047079_-|phage-tail-protein
MGLNIAPAFRVVANSQDITDKIMSRFKSLRITDETGNSSDTLELQLADHDPNDPIQLPPVGAELEAFIGYDGEVRRMGLYVCDEVEISGYPGSMTLRARAAPFETSKGGKNDLQTQKTRTWKKGTTIGDMVKRMAAEHGLTAAVSASLASIVLPLTVQSQESDMNLLLRLAKQHDAIAKPGGGRLMLVKRGESTTASGERIPEVTLTPADGSSYRVTIAARDDAGTTIAYYRDVRGAQRQEVKVGSGEPIVRLRMAYADRETAEAAARAKHREQARQTRTLSYSLPGRETLMAEATVIMQGFRDGVDGEWLVKRAEHSIGSDGYRTSIECEQPNSAEAVKAASSAAVKQTPQVGSEV
>CP023271.1|AVJ32135.1|1047069_1047285_-|phage-tail-protein
MARTYNTRDGDVVDRVAYAHYGEQSPAILRAVFDANPGLAARGPVLTAGVAIVLPDVQRPAKERKGVSLWD
>CP023271.1|AVJ32136.1|1047268_1047736_-|phage-tail-protein
MKREFVTGAVDKLLSQFKGNDSGNAPVLLMLGGFKFSLNTAVFQQIQQSNDFRWQAQDRVGQMPALQYTGPGSATMTLPGVVYPLFRGAGNEMSQLRKLASQGKPQRLLTGKGGNLGLWVIEKIDVTSSEFTVDSQIQKQDFTLTLRKHSDGTNV
>CP023271.1|AVJ32137.1|1047738_1050180_-|phage-tail-tape-measure-protein
MASNVQTTTITIGGSVSRSLQDALSFSNDGLKRLGDEADKLERKLNVMGRSSNQFARMRAEADALRASQEALQRIEDKRTANLEKREKLGSAFGDARGMLGSAITTLAKPVENAAGFARENQAIGNAANLTRAQVAALGQTILAESSRTHRGAGELQRAVSQLVAAGLDAQTAQSSLGAIGRTTTATGESIDDVTLAASGLQQALKINPAGLQSALDVLVVAGRNGGLGLKDMAGALPVLGGAFQSLQMHGNAAAATMGAALDVARQGAGGADEAAGNMQRFMASILSPDLQARAKKGFKLDLRRIISEAQSSGGNPFDAAMQAIIQATAGDQAKIGKLFGDAQAQNFVRPMIQNWDEYVRIRDKALNSSAGTTDSGFAAKLQTDPEKIEGAKIAVDNLSKAFGAALLPAVGEAAVKLTELLNGVASFVQENPKLIANTTQVVVGLMGMRTAVLGVRYAWTFLQGPILAVQKAFELFRGGSLLAQMGQFGPTAMRLASGFRVVATAVGAIGGGPIAIAIAAITAGALLVRKYWEPIKAFLGGVWDGLSGAGTAAMGELMRAVEPLRPAWEAVGGLLGQAWDWLSKMLAPAQYTGNELSRVAEIGSLVGTALLANFRLVIQVVGVVVEAISLLGDVIGTVAGFISVTLGGVWDWISEKATAAIGYIMAELAPLMNFVGGVMDKVGSALGMAKDKAVDGARMAVGVAHGAAAGYAAVRDGKVAMPPVRLAVGGLHSAVVDRRAPGLPAPSQGRAAPPMPSSATARTSTTVQQQQTNNITIHQQPGESSEALARRTANALQHQQAVQARATLGDRN

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Click the colored protein region to show detailed information

Crispr_ID: CP023271_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023271_7

1636189-1636327

Orphan

Consensus_repeat	Method
GGTAGGTGCCAGCCTTGGTTGGCACCCTGCGCGCCGACCAAGG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP023271_7

>merge|CP023271|7|1636189-1636327|CRISPRCasFinder
GGTAGGTGCCAGCCTTGGTTGGCACCCTGCGCGCCGACCAAGGTCGGCATCTACCGGACCGCGCGACGTGCGCCGACCCTGAGCGCCCGGGATCCAGGTAGGTGCCAACCTTGGTTGGCACCCTGCGCGCCGACCAAGG

>CP023271|7|7|1636189-1636327|CRISPRCasFinder
GGTAGGTGCCAGCCTTGGTTGGCACCCTGCGCGCCGACCAAGG	TCGGCATCTACCGGACCGCGCGACGTGCGCCGACCCTGAGCGCCCGGGATCCA
GGTAGGTGCCAACCTTGGTTGGCACCCTGCGCGCCGACCAAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP023271.1\|AVJ32619.1\|1632129_1635150_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|225829
CP023271.1\|AVJ32622.1\|1637627_1638503_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235447
CP023271.1\|AVJ32618.1\|1630524_1631916_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236531
CP023271.1\|AVJ32626.1\|1640642_1641506_-\|phosphate-ABC-transporter,-permease-protein-PstA	unknown	unknown	gnl\|CDD\|183065
CP023271.1\|AVJ32614.1\|1624064_1624808_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|183021
CP023271.1\|AVJ32625.1\|1639792_1640623_-\|phosphate-ABC-transporter-ATP-binding-protein-PstB	unknown	unknown	gnl\|CDD\|182692
CP023271.1\|AVJ35234.1\|1636879_1637635_-\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760
CP023271.1\|AVJ32629.1\|1644142_1645162_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl\|CDD\|273374
CP023271.1\|AVJ32617.1\|1628345_1629584_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183211
CP023271.1\|AVJ32612.1\|1620904_1623364_+\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
CP023271.1\|AVJ32613.1\|1623449_1623935_+\|aldehyde-activating-protein	unknown	unknown	gnl\|CDD\|226314
CP023271.1\|AVJ32628.1\|1642556_1643645_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl\|CDD\|273374
CP023271.1\|AVJ32616.1\|1626390_1628349_-\|MacB-family-efflux-pump-subunit	unknown	unknown	gnl\|CDD\|182528
CP023271.1\|AVJ32615.1\|1624954_1626394_-\|transporter	unknown	unknown	gnl\|CDD\|224455
CP023271.1\|AVJ35233.1\|1629789_1630518_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP023271.1\|AVJ32621.1\|1636334_1636856_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
CP023271.1\|AVJ32624.1\|1639020_1639728_-\|phosphate-transport-system-regulatory-protein-PhoU	unknown	unknown	gnl\|CDD\|273990
CP023271.1\|AVJ32627.1\|1641505_1642474_-\|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl\|CDD\|183070
CP023271.1\|AVJ32623.1\|1638489_1638840_-\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ32620.1\|1635496_1636081_-\|ribonuclease-T	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|179951

Protein	Function_ID	Function_description	E-value
CP023271.1\|AVJ32619.1\|1632129_1635150_+\|GGDEF-domain-containing-protein	gnl\|CDD\|225829	COG3292, COG3292, Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms].	1.87724e-66
CP023271.1\|AVJ32622.1\|1637627_1638503_-\|hypothetical-protein	gnl\|CDD\|235447	PRK05409, PRK05409, hypothetical protein; Provisional.	4.07042e-146
CP023271.1\|AVJ32618.1\|1630524_1631916_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	1.05453e-42
CP023271.1\|AVJ32626.1\|1640642_1641506_-\|phosphate-ABC-transporter,-permease-protein-PstA	gnl\|CDD\|183065	PRK11268, pstA, phosphate ABC transporter permease PstA.	1.7376e-114
CP023271.1\|AVJ32614.1\|1624064_1624808_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|183021	PRK11181, PRK11181, 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB.	3.05733e-101
CP023271.1\|AVJ32625.1\|1639792_1640623_-\|phosphate-ABC-transporter-ATP-binding-protein-PstB	gnl\|CDD\|182692	PRK10744, pstB, phosphate ABC transporter ATP-binding protein PstB.	0
CP023271.1\|AVJ35234.1\|1636879_1637635_-\|DUF2063-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	6.83861e-58
CP023271.1\|AVJ32629.1\|1644142_1645162_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl\|CDD\|273374	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88., phosphate ABC transporter, phosphate-binding protein. This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins. [Transport and binding proteins, Anions].	8.43266e-137
CP023271.1\|AVJ32617.1\|1628345_1629584_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	2.00761e-104
CP023271.1\|AVJ32612.1\|1620904_1623364_+\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
CP023271.1\|AVJ32613.1\|1623449_1623935_+\|aldehyde-activating-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	2.67983e-45
CP023271.1\|AVJ32628.1\|1642556_1643645_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl\|CDD\|273374	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88., phosphate ABC transporter, phosphate-binding protein. This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins. [Transport and binding proteins, Anions].	2.63983e-133
CP023271.1\|AVJ32616.1\|1626390_1628349_-\|MacB-family-efflux-pump-subunit	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
CP023271.1\|AVJ32615.1\|1624954_1626394_-\|transporter	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	4.81413e-63
CP023271.1\|AVJ35233.1\|1629789_1630518_+\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.59267e-74
CP023271.1\|AVJ32621.1\|1636334_1636856_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.91026e-18
CP023271.1\|AVJ32624.1\|1639020_1639728_-\|phosphate-transport-system-regulatory-protein-PhoU	gnl\|CDD\|273990	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function. [Regulatory functions, Other, Transport and binding proteins, Anions].	3.52051e-58
CP023271.1\|AVJ32627.1\|1641505_1642474_-\|phosphate-ABC-transporter-permease-subunit-PstC	gnl\|CDD\|183070	PRK11275, pstC, phosphate ABC transporter permease PstC.	4.59771e-120
CP023271.1\|AVJ32620.1\|1635496_1636081_-\|ribonuclease-T	gnl\|CDD\|179951	PRK05168, PRK05168, ribonuclease T; Provisional.	6.4452e-133

>CP023271.1|AVJ32620.1|1635496_1636081_-|ribonuclease-T
MSQRFRGFLPVVVDVETGGFDSQRNALLEIAAVPIEMDENGLLYPGQTASAHVVPAEGLEIDPKSLEVTGIILDHPFRLAKEEKAALDHVFTPVRAAMKKYGCQRAILVGHNAHFDLGFVNAAVARTGHKRNPFHPFSVFDTVTLAGIAYGQTVLARAATAAGLGWDANEAHSAVYDTEQTARLFCTIANAWPR
>CP023271.1|AVJ32619.1|1632129_1635150_+|GGDEF-domain-containing-protein
MGGQGAGRRRAGRHAENIGRLLRVGVLWLLLAIATPLAAQSGAPPLRDYAIDVWTSRNGLPHNSLRDIAQTPEGHLWFATWEGLVRYNGLDFTVFDRSTRPGLRDNGIGALLVDPQGGLWISDSRGNVSHRGSDGQWRVWEHQPDTPQVLIQSMQMDSQGRLWLLYEGKGIGYLTPDKGIVYQRPPPDLPLAMSFTKMAVDAQDRVWIGTLDGLVLRDTAGVLQRAPAAWGVDKGLSWPYRAPDGTLWIVAGERLYRVEDDRLVLVHRLPGQLHLTAMLQDRHGDLWLGTENQGLLRISAHGLERLPAGLNLPGGRVVSLREDAEGSIWVGANGGLYRLRETLFSSYTERDGLSGDYVRTVLEDRDRHLWVGSASGLDLQTADGRFRAIPLHNRGGKAPSVLSLAQDAGGDLWVGTFGDGIYRLHADGRLRHNYAAADGLPGGNIRAISIAPDGVVWAGTQKGVVRIEGDQVTVPTVAGMPGGLTTALEHDHQGNLWIGTIEGVRVLRGDRVQSIDLAPLGGGRSVFGFHQIGDAMWISSDRGLYRWQAGTLARVGLEQGMPVDAVFQLVPDRLGNVWISSNRGVLRTDMATLNAVADGRAPRVTVERYNEIDGMANAQANGSSGPSAILRQDGTFWVVTAGGLSTVDPQRLQRFRERPAPPAAIENVQVDGAPVHWEGPERNLIPGGRRLAVSYVGLSYLMSDRIRYRTRLEGLDNGWVERGPQRSVEFVGLPPGDYTLHVAAAHPGGSWGHQEAVWSFTVEPFWWQRHSVQALIGLVLLSALVALYRFLLQQYKASNLRLARRVDEATFDLQAQTVHLQALNQEKTELAERLARQAEAFERQAREDALTRLANRRGFDEALARDFARAQRSGHPLCLVVLDIDHFKDVNDQHSHSIGDAVLVEVAQVIAAASRDSDLPARTGGEEFALLLNDTRLEEAAQLCARLRGLFHDHPDWAGIPGLRVTFSAGLVELDGDDRTPALLYQRADRALYRAKSDGRDRTSIG
>CP023271.1|AVJ32618.1|1630524_1631916_+|two-component-sensor-histidine-kinase
MKRLRHFLSSMVGRLFVILLLGMSVAAIGATMLASSKRQQEFERQNLNRIADRLQGYINLLDGNPELRERLLEIGGPSVRALQPGARIGRADKALMEVLEDRPGPVSRAHVHFASFRSCIPKLQDLLPPPPPGHRKPPHERDPTFIPPKCRAVDVVLNDGTLLKLALDSPAIAHNGILAVDPLFLTLLVLAIAVLAYVVARMASAPLQELAAAAEDLGDDLQRAPLPLRGPREVQRAAEAFNAMQHRLQRHLAERTQMLAAITHDLQTPLTRLRLRLENVTDETLRERLIGDLAAMQALVREGLELARSAESAEQRAALDLDSLLESIVEDTAEDGADVVFEGRSGAVLMLRPLAMHRLFSNLVDNAVMYAQRARVRVERGEGTITVVIADDGPGLADDQLEAVFDPFVRVETSRSRETGGAGLGLTIARALAEKDGGRLWLRNRPEGGLEAVVQWSTSAEAR
>CP023271.1|AVJ35233.1|1629789_1630518_+|DNA-binding-response-regulator
METENPMHRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADGTSMRQLLEREHVDLIVLDLNLPREDGLTLCRDLRARSNTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLRRTEALPANLEPLAVRRARFSRWIFDLEHRHLVDPDGRVVVLSGAEFRLLRVFIAHANKVLSREQLVALSSGRNYEAQDRAIDLQVSRLRNKLADDGGPDGLIKTVRNEGYVLASAVNLE
>CP023271.1|AVJ32617.1|1628345_1629584_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MISRLLPATRKGRLMLIALIVLIAAVSAWWLLRKPAAPALATTPVSRGDIEQTVEATGVIDAYKLVSVGAQASGQIKSLKVQLGDTVKEGDLIAEIDATTQQNQVLNAQASLDQVTAQRAVQQATLRQAELEFARQQQMLAAEATSRQEYDAAEAQLKTARAQLQSYEAQIKGRETELGTARANLAYTRIVAPMDGTVVAVVAEEGRTVNANQTAPTIVMLARLDVVTVNAEVSEADVVKIKAGMPVYFTTLGDPDRKYHATLRQINPAPASIANESSSSSSSSSSSSSSSAVYYNALFDVENPDGTLRIDMTAQVSVLLKQAKGVLMVPAVALGPKSRDGERIVRVVDDKGQPQPRKIKVGINNGANVEVLSGLKEGERVVVGEGGAAAAAGGGNRGGMQMRVGGPGMGRR
>CP023271.1|AVJ32616.1|1626390_1628349_-|MacB-family-efflux-pump-subunit
MSMTAPLLRLRDLRREFPAGEDVIAVLRDVNLDIHAGEMVAIVGQSGSGKSTLMNILGCLDRPTRGSYQVAGRETGKMAPDELAELRREHFGFIFQRYHLLGDLDARGNVAVPAVYAGSPGPVRTARAEQLLQRLGLADRMHHKPGQLSGGQQQRVSIARALMNGGEVILADEPTGALDTKSGEEVMAILGELHAEGHTIIIVTHDMSVAEHAQRIIEIRDGEIIADRANPAAPSYRAQREPSTGVAHGSSWQAARDRFTEAFRMALLAMNAHRLRTFLTMLGIIIGIASVVSVVALGNGSQQQILQNISALGTNTIDVYPGRGFGDMRSARVQTLKASDADALSRQSYVDSATPSVSSSVTARYRNQSATAQISGVGEQYFRVKGVSLLSGSFFDTDAVKGLGQVAVIDENTRTQFFPDSDPIGQVILLGNVPVRVVGVAKKQSFGFGGSTSLSVFVPYTTVMSRMLGQSHVSSITVRVNDETPMDAAQEAITRLLTMRHGTEDFFLSNSAEIRDTIEQTTRTMTLLIGAIAAIALLVGGIGVMNIMLVSVTERTREIGVRMAVGARQSDIRQQFLIEAVLVCLLGGLLGIGLALLMGVLIGRFASDFQVLFSTASIIAAFACSTLIGVAFGFLPARSAAQLDPVEALARE
>CP023271.1|AVJ32615.1|1624954_1626394_-|transporter
MKMMTRLPFPAPSRLLLSGAVLLALSACASVGRYPVEDPSVAANYGRGDATLNAPADDPRSGLDTPARDVRQDNWWTGFGDERLDRLVAQALAANSDLGAAGLAVQRARLQAGLASNALWPQPSSSGVSGSGSRATDQADDWRRSYSTGVSLGWEIDLWGRLRSQRDIARWEANASEEDRQNTALLVIGDVINQYWALAYLNQSIATGQANLERLQRTHELVQARFDAGAVSRLEVRQALQNLQSQRSAQSALEQQRVEVRNALTVLLDGTPWPQHDEPQNLLEAQSPSIAEGLPADLLGRRPDLRAAELRLRNSLKTIRVTATQYYPTLSLTGSLGSSATSLGDVLRNPVATLGAGLSLPFLNLQRAQLDTDVAGTNYQIAATNFRKTLYTALSEVDNALSAREQLLRQVTASQASYDEAVEVERAQEVRYRVGATDLRTWLEAQQTRRDAELSLARVRQSQLNNDVTLFKALGGSAG
>CP023271.1|AVJ32614.1|1624064_1624808_+|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MSKNSQWIVGVNAVASSIENDAENVREVLVEAGAKNPRLVEIEENARRKGIDVRKVNSQALDGVGGSVRHQGVAARYAAARTYNENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAGATAVIIPKDKSATVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATASLYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVRQRG
>CP023271.1|AVJ32613.1|1623449_1623935_+|aldehyde-activating-protein
MQGQPEYSGGCQCGAIRFQARGELTDSSICHCRMCQKAFGAYYAPLVSVRGVQFSWTRGQPRYFQSSNVVRRGFCADCGTPLTYEAPDGVAVAAGAFDQPERLPPTLQYGVERKLPFVDGLGRLPARRTEQDMAALEFLATVVSHQHPDHDTPHWPPRTRG
>CP023271.1|AVJ32612.1|1620904_1623364_+|ribonuclease-R
MTTKKPSKGGSKSRSEAPNKGTKQGTARNNKPGKPLPGWLPALAEGGAPPPGRGRRNAEPPGPAMGRKLPPAGKVIDDPYASREAEKYEQPIASREAILALLERCEGPQTAEELGARLGLTAPDRAEALSRRLGAMVRDGQLVQNRRGGFAPIQTLNLVTGVVIANPEGFGFLRPVEGGDDLFLPPYEMRKVMHGDKVLARVTGIDHRGRREGSIARVLERGMTRLIGRFSVEMGINYVVPDDKRIQRNVQVPPDQTGGANDGQLVVCELTQAPDSRRPPIGRIIAVLGDKLTASLVVETAIHGHELPFEFPQEVLDEAASVPLVVEPAMIGGRVDLRSTPLVTIDGEDAKDFDDAVYCEPNADGFRLVVAIADVSNYVRPGTPLDDEAQKRATSVYFPGFVVPMLPETLSNGICSLMPKVDRMCFVCDMQIDREGQVTGSRFYEAVMNSHARLTYTQVWQAVGEDDAGAKAFIGDLLPQVQRLHQLYKVLSKARSKRGAIEFESSEVRFVLDNRGEVTQAGMLVRNDAHKLIEECMIAANVEAAKYLLSRHVPAPYRVHEKPPETKYADLLEFLKEFKLSLPPWSKVRPGDYTKLLKKIRDRPDATLLESVLLRSQSLAVYSPDNNGHFGLALEAYAHFTSPIRRYPDLLVHRAIKHALSGKPLDKFTYTAREMAALALQCSERERRADEAEREVDERYRAAWMEKHVGGQFDGVISGVTSFGLFVELADSKVQGLVHVTQLPQDYYKFDATRKTLTGERRGSSYRLGDQVRILVLKASMEERKIDFRLVEHKGEEEEAGPAPLPERGKPAKRAKKKY
>CP023271.1|AVJ32621.1|1636334_1636856_-|DoxX-family-protein
MKTPTLAAARGQLDRFAPWLAPLGLRLLLAWEFFESGREKLHGQNWFADLQDAFPFPFDQLPAALNWQLATWFELVGAACLLLGFGTRVAAASLLVLTAVATYAVHWPAEWSSLGDLAMGYAISDQGFGNFKLPLLFMAMLLPLLFTGAGRLSVDAVLARWCPSGPTARPALR
>CP023271.1|AVJ35234.1|1636879_1637635_-|DUF2063-domain-containing-protein
MADAPERLRAQQHAFTAHLRDPAQVPAPPGMDPRRVAVYERLLFNNLLGLLSNGFPVCVRLLGEPDWSALVRHYFASHHCHTPLFTELAAEFVQWLQVQPELPHPALAELAHYEWVETALYQLQADPLPEPGNIDPLQVPLRRSPLAWPLLYRWPVHQLGSEDAPSQPPAEPTGLLVRRDADGAVRFATLTSLAVHLLTLIGESPGTTGQQQLQQLAALHHLDPGTLAAPGAHLLQQFLRAGVIGPLPASP
>CP023271.1|AVJ32622.1|1637627_1638503_-|hypothetical-protein
MASTDVRAGVVHPRSPLPAAAVGLGLRRALLQDLRGAPAGDFDFLECAPENWIGVGGPAGDALAELAARHPLSCHGLSLSLGGSAPLDTQLLAQVGAFLHQHQVPLYSEHLSYCSDEGHLYDLLPIPFTDEAVRHTAARIARVQDILGRRIAVENVSYYLAPDPTMDELAFTTAVLAEADCDLLLDVNNVYVNACNHGYDADAFIAGLPAQRIVCLHVAGHLDEAPDLKIDTHGSPVIDPVWDLLARTYARIGPRPTLLERDFNFPPYAELRGELQTIHRLQAAHAEAAHG
>CP023271.1|AVJ32623.1|1638489_1638840_-|hypothetical-protein
MSTSNKTLSLLTATALAAGLGMTASASALSMTDLAQGYLVAGQAAKATDAKATDAKSADAAKHAEGKCGADGKSAEGKCGGDKGKAAAGADTKAKTGGDKKSAEGKCGEGKCGGKH
>CP023271.1|AVJ32624.1|1639020_1639728_-|phosphate-transport-system-regulatory-protein-PhoU
MNLPNDHIVKSYDEEQQRLVAEIVRMGEMAVAQLEASMDVIEKRDENAAHRIIANDEAIDSLEQQISHDVMRLALRGPMARDLREILAGLRIPADIERIGDYAANVAKRSIALGKVPPLPQIQGLRALGRLAAQQVRRAIAAYRDNDADAALELREDDARLDAQYTALFRELLTYMMEDPRNITPCTHLLFMAKNLERVGDHATNIAENVWFLVHGEQPLPPRQKRDETSSAGDI
>CP023271.1|AVJ32625.1|1639792_1640623_-|phosphate-ABC-transporter-ATP-binding-protein-PstB
MNDLSNAVPMQRIVVPASHENLHAPAPVKLAARGLDFYYDKFHALKGINLEIPEKRVTALIGPSGCGKSTLLRIFNRIYALYPKLEARGEVILDGENILSPKYPMNRLRSKVGMVFQKPVPFPMTIFENVAYGIRHHEKLSKADMADRVEHALRQGALWDEVKDKLNQSALGLSGGQQQRLCIARAVALRPSVLLLDEPTSALDPISTSRIEQLVEELKHEYTIVIVTHNMQQAARVSDYTAFMYLGDLIEHDRTEVIFSQPSKQQTEDYITGRFG
>CP023271.1|AVJ32626.1|1640642_1641506_-|phosphate-ABC-transporter,-permease-protein-PstA
MSSTADSLYLRRRIGNVIAIAMSCATALFGLFFLGWILFTLASKGLAGINLDLFTKMTPPPMQEGGLANAFFGSAVMCALAIGIGTPLGVLAGTWLAEYGNARKAGTVVRFVNDILLSAPSIVLGLFVYTLYVMQTGGSFSAFAGALSLAFIVLPVVVRTTDEMLRLVPSQMREAALSLGIPQWKVIVQVLYRSASAGIITGILLALARISGETAPLLFTAFGNQYWNSNVFQPMASVPVVMNQFAGSPYESWQVLAWAGALVLTVFVLLVSLSARGILLRNRISHD
>CP023271.1|AVJ32627.1|1641505_1642474_-|phosphate-ABC-transporter-permease-subunit-PstC
MNAIAQPVAAPSTRDTRDARNDKLFRWVLVGTVIFVLIALACAALSMLWGGRHALQVQGLSFFFSSDWNPVENKFGALAPIYGTLVTALIAMVIAVPVSFGIAFFLTEVAPRWLRGPVGTAIELLAGIPSIIYGMWGLFVLVPVMTEYVTPFLNETLGEWPIIGPVFQGPPLGIGMLTAGFVLAIMVIPFISSVMREVFLTVPTRLKESAYALGSTKWEVSWDIVLPYTRSAVIGGVFLGLGRALGETMAVAFVIGNSVRLSPSLLEPGTTIAALIANDFGEATETYRSALLLLGFVLFIVTFVVLAIARLMLMRLSRKEGN
>CP023271.1|AVJ32628.1|1642556_1643645_-|phosphate-ABC-transporter-substrate-binding-protein-PstS
MKLHSASLAALSLAIALGLSACGGDKQAAQQPAADGAAAPAAAGDKVTAEVSGAGASFIFPLVSKWSADYNTATGAKINYQSIGSGGGIAQIKAGTVDFGSSDKPLSSDELAQAGLAQFPSAIGGVVPVVNIDGLEAGKLRLSGALLADIFLGKVKTWNDPAIVAANPGVTLPDGKITIVHRSDGSGTTFNFSNYLSKVSPEWKSKVGEGTSVQWPDGVGGKGNEGVASYVKQIKGSIGYVELAYALQNAMPYTSLQNAAGTWVQPNAETFAAAAASADWASAKDFNLVITNAPGEQAWPITATNFMLMQKKPKDAKRNQDALAFFKWAFESGQTQANELHYVPLPAELVKQIEAYWATELK
>CP023271.1|AVJ32629.1|1644142_1645162_-|phosphate-ABC-transporter-substrate-binding-protein-PstS
MIHAFKSRAAVAILAASSVFAANAADVTGAGASFIYPVMSKWSADYSTATGKKVNYQSIGSGGGIAQIKAATVDFGSSDAPLKPEELAAAGLAQFPSVIGGVVPVINVAGVAPGALKLDGPTLANIFLGKITTWNDPAIAALNSGLTLPSGKITIVHRSDGSGTTFNFVNYLSKVSPEWKSKVGEGTSVQWPAGIGGKGNEGVAAYVKQIKGGIGYVELSYALQNKMSYAAMKNAAGKIVQPSDASFSAAAASADWANARDFYLVMTNAPGADAWPITATNFILVRKQPKNVAGAKATQEFFRWVYKNGDAQAKQLDYVPLPDALVRQIETYWTQNLKY

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Crispr_ID: CP023271_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023271_8

1847108-1847179

Orphan

Consensus_repeat	Method
GTAGATCCACGCCATGCGTGGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023271_8

>merge|CP023271|8|1847108-1847179|CRISPRCasFinder
GTAGATCCACGCCATGCGTGGATATCGCGGAAAAGATCGGATGGACAACGTAGATCCACGCAATGCGTGGAT

>CP023271|8|8|1847108-1847179|CRISPRCasFinder
GTAGATCCACGCCATGCGTGGAT	ATCGCGGAAAAGATCGGATGGACAAC
GTAGATCCACGCAATGCGTGGAT

Protein	Signature genes	Signature genes Name	Protein_function
CP023271.1\|AVJ32807.1\|1845143_1846070_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227099
CP023271.1\|AVJ32805.1\|1842415_1843117_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|380375
CP023271.1\|AVJ32801.1\|1836830_1837982_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
CP023271.1\|AVJ32803.1\|1839312_1840008_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378924
CP023271.1\|AVJ32814.1\|1851152_1852046_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
CP023271.1\|AVJ32813.1\|1850427_1850988_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225337
CP023271.1\|AVJ32806.1\|1843266_1844187_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
CP023271.1\|AVJ32808.1\|1846066_1846876_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
CP023271.1\|AVJ32810.1\|1847868_1848375_-\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ32818.1\|1855602_1856982_+\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|236939
CP023271.1\|AVJ32817.1\|1853592_1855017_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340917
CP023271.1\|AVJ32802.1\|1837985_1839125_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340951
CP023271.1\|AVJ32800.1\|1834377_1835304_-\|cytochrome-C	unknown	unknown	gnl\|CDD\|225797
CP023271.1\|AVJ32809.1\|1847189_1847858_-\|DUF1275-domain-containing-protein	unknown	unknown	gnl\|CDD\|377734
CP023271.1\|AVJ32815.1\|1852078_1852594_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225854
CP023271.1\|AVJ35247.1\|1835300_1836647_-\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|365823
CP023271.1\|AVJ32816.1\|1853082_1853406_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|378771
CP023271.1\|AVJ32804.1\|1840165_1842361_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|227114
CP023271.1\|AVJ32812.1\|1849856_1850336_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|224146
CP023271.1\|AVJ32811.1\|1848371_1849772_-\|phosphate-starvation-inducible-protein-PhoH	unknown	unknown	gnl\|CDD\|224787

Protein	Function_ID	Function_description	E-value
CP023271.1\|AVJ32807.1\|1845143_1846070_-\|hypothetical-protein	gnl\|CDD\|227099	COG4757, COG4757, Predicted alpha/beta hydrolase [General function prediction only].	2.57626e-14
CP023271.1\|AVJ32805.1\|1842415_1843117_-\|pirin-family-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.88467e-74
CP023271.1\|AVJ32801.1\|1836830_1837982_+\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	4.56365e-14
CP023271.1\|AVJ32803.1\|1839312_1840008_+\|alpha/beta-hydrolase	gnl\|CDD\|378924	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family contains alpha/beta hydrolase enzymes of diverse specificity.	1.14341e-15
CP023271.1\|AVJ32814.1\|1851152_1852046_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	3.66137e-130
CP023271.1\|AVJ32817.1\|1853592_1855017_+\|MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.10676e-154
CP023271.1\|AVJ32806.1\|1843266_1844187_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.67826e-67
CP023271.1\|AVJ32808.1\|1846066_1846876_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	3.32694e-130
CP023271.1\|AVJ32813.1\|1850427_1850988_-\|transcriptional-regulator	gnl\|CDD\|225337	COG2716, GcvR, Glycine cleavage system regulatory protein [Amino acid transport and metabolism].	8.2524e-74
CP023271.1\|AVJ32818.1\|1855602_1856982_+\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|236939	PRK11623, pcnB, poly(A) polymerase I; Provisional.	6.29228e-172
CP023271.1\|AVJ32802.1\|1837985_1839125_-\|MFS-transporter	gnl\|CDD\|340951	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters. The gene encoding Sinorhizobium meliloti membrane protein MosC is part of the mos locus, which encodes the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine. MosC belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.27221e-82
CP023271.1\|AVJ32800.1\|1834377_1835304_-\|cytochrome-C	gnl\|CDD\|225797	COG3258, COG3258, Cytochrome c [Energy production and conversion].	7.89684e-77
CP023271.1\|AVJ32809.1\|1847189_1847858_-\|DUF1275-domain-containing-protein	gnl\|CDD\|377734	pfam06912, DUF1275, Protein of unknown function (DUF1275). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although most members have 6 TM regions, and may be putative permeases.	1.22262e-35
CP023271.1\|AVJ32815.1\|1852078_1852594_+\|hypothetical-protein	gnl\|CDD\|225854	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane].	0.00438031
CP023271.1\|AVJ35247.1\|1835300_1836647_-\|alcohol-dehydrogenase	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	1.20314e-09
CP023271.1\|AVJ32816.1\|1853082_1853406_-\|ferredoxin-family-protein	gnl\|CDD\|378771	pfam11953, DUF3470, Domain of unknown function (DUF3470). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 50 amino acids in length. This domain is found associated with pfam00037. This domain has a single completely conserved residue N that may be functionally important.	7.04517e-20
CP023271.1\|AVJ32804.1\|1840165_1842361_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|227114	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism].	0
CP023271.1\|AVJ32812.1\|1849856_1850336_-\|peroxiredoxin	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.97433e-70
CP023271.1\|AVJ32811.1\|1848371_1849772_-\|phosphate-starvation-inducible-protein-PhoH	gnl\|CDD\|224787	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only].	0

>CP023271.1|AVJ32808.1|1846066_1846876_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MSPTTPVSALTIAGSDSGGGAGIQADLKAFAAHRVHGLSVIAALTAQNTRGVRAVHVPPIDFLRAQIEACFDDFDIHAVKLGMLANAEVIHAVADALERHRPPHVVLDPVMVATSGARLLEDSALQAMRQRLLPLATLVTPNAPEAELLVGRSIANGNDAERAAASLLDLGAGAVLLKGGHLHEGNRVVDRYFDGVSSEEFIHARLPLDAHGTGCTLASAIAAQLCNGLSLANACEAGIDYVARGLQQGYAPGRSEVLVLDHFGAAPHA
>CP023271.1|AVJ32807.1|1845143_1846070_-|hypothetical-protein
MSDSPRALTVNSGDGHRFDVIACVPAQPLARLLWLPALGVAARHYVPLAQALAARGVAVYLHEWRGNGSSSLRPSRSQDWGYRQILDHDLPASQALLADADDAQEVLPWIIGGHSLGGQLACVHAGRRPQAFDRLWLAASGTPFWRTFPPPRGWLLPLFYRFLPWIARRQGVLHGRRLGFGGTEARGLIADWARVGLSNHYAAAAMDEDLDAQMARVHGSAQAVLMEDDWLAPSGSMQALLAKLPNVASELRVLSAQELGTQADHFAWMKHPEAVAEAFFIQLGENFHKSVDDSRRHPHNSAPVAGRP
>CP023271.1|AVJ32806.1|1843266_1844187_+|LysR-family-transcriptional-regulator
MLKLSLDALQILDAIDRRGSFAGAGKALHKVPSTISYTVAKLEEDLGVQLFDRIGPRAEPTEAGRALLEEGRHLLRAARELELRVRRVASGWEAELTLAVDSVFPTWLLGPDIAAFREVAAPTRLRLFGEALSGTWEALLDRRADLLVAAPGEGPSGGGYVVEPLGSVDFVFAVAPGHPLASVPGVLGREQLAPYCAIAVSDSARRLLPRTVGLLMGQETLTVPDMASKLKLQCQGLGFGFLPEPCARAAVARGQLVIREVEEHKPEETFWLAWRTGEDGAALRWWRERLRRPELLAQWWQAMAEG
>CP023271.1|AVJ32805.1|1842415_1843117_-|pirin-family-protein
MLQIRKSATRGLAEHGWLSSRHTFSFASYYDPRYVSFGPLRVINEDKVIGGQGFGTHSHSNMEIVSYVLGGALEHKDSMGTGSVLRYGDVQRMSAGSGVSHSEFNHSASDPVHFLQIWIFPEAENIAPSYEETHFTPESKRGQLRLIASPDGADGSLHIHQDARIFATILDGEQKLHHALAAGRGAYVQVARGQLQVNGITLEAGDALQVSDEAQLTLENGNDAEVLVFDLKL
>CP023271.1|AVJ32804.1|1840165_1842361_+|TonB-dependent-siderophore-receptor
MSSVPVRFSVLSLRRRPLAKALANGLLLTTLATAGAASAQSAPAEEEGKTPSQTLQTVQVTANQLGTITEGSGAYTPGTIATATRLVLTPRQTPQTISVITRAQMDDFGLDGIDDVMRVTPGISIVTYDSERTEYYARGFAVQNFQYDGIPMSRDSAYSAGNTLSDTAIYDRIEVLKGATGLLTGMGDPGATINLVRKKPGKEFAGSATLGVGRWDDYRAEVDVGGPLTADGRVRGRAVGAWQDKHSNLDFYQRTSKVGYAVLEADLGERTLLTVGGDVLESDPKGSTWGGIPLLDSQGNFNDMPRSFNNGTHWSGWRQYVRTGFATLEHTFDNDWVAKLQLNHQVNGYDAALAGAAGGNPDPVTGEGVSLWLGKYVGKTVSNAADFYLSGNFGLFGRQHELVVGGSASRKRWTNTGYSPQPGYPTAVADYNSWKGDIPEPEWQRGYGNNEVTRENGLYVVGRFDVADPLKVIVGSRLASYRSPQTRETGVFVPYAGVVYDLGQHYSVYASYSTIFKPHSERDEQGKALDPLEGRSYEMGLKAEFLDGRFNASAALFQLDQDNFAQPTGGKTPNGEDAYRALMGVRTKGYELEMSGQLAEGWQVQGGFAHKIARQAGSKVTTLEPENQFSLHTSYRLRGDWQGLTVGGGARWQDSTFGDITNPASGTSVVHRTQPYWLLDAMARYQFNDRLSATVNVNNLLDKRYYTIFSWYSTYTWGEPRNVRLAVTYKF
>CP023271.1|AVJ32803.1|1839312_1840008_+|alpha/beta-hydrolase
MSTTPTILLVHGFWGGAAHWGKVILELHRKGHDQVKAVELPLTSLVNDAERTRRMIRQIDGPVVLVGHSYGGAVITEAGNQPNVQALVYIAAFAPDSGESPGGITQQHLPEAAPNLAPDSDGYLWLRADKFHESFCQDLSADEGWVMAVTQKAPLASTFGDAISDPAWKHKPSWYQLSSQDRMIAPQNQKAMAERMQPKRLLQLEASHASLASHPSEVAALILEAVAAVDG
>CP023271.1|AVJ32802.1|1837985_1839125_-|MFS-transporter
MTPSSPRAQQHATRAAFFIPGFATAAWAPMVPFAKAKAGLSDASLGGLLLCLGLGSLLAMPLAGALTARLGSRRLMIATTALILLALPLLTLAPTPLALGATLFVFGAGVGAMDCTMNMQAVAVERDAGRPMMSGFHAFYSIGGFIGAGCMTGLLVLGTPLWLASLVAVAAMLLVALLSAPHWRPQRILHDGPMLALPHGVVLFISVLAFVVFLAEGSMLDWSAVFLAEIRHVPRDQAGAGFAVFTLAMTAMRLFGDGIVERLGRTRTIVIGGITAAAGFALATLVPSFAMALVGYVLVGLGCANIVPALFSMAGQQRAMPESIAITAVTTLGYAGILAGPAAIGALAHATSLGFAFLCVAAMLLGVAASARSLARRLP
>CP023271.1|AVJ32801.1|1836830_1837982_+|alpha/beta-hydrolase
MKRLLLLLLACAGLWLAACSSSMTASSTSLSDRLIAPGGVSTLLDQPRIAAAVAALPNRHGFAPGRDGVPIFWRAFDAGDYGARYHYLPQQHQNGLPLDTGLSLSVPQPFRAQAPRGTVVLLHGWMMNGDSMLPWSLQLAESGYRVITLDLRNHGQSGAGPSGYGTYESDDVVDVIAELRARGEVTGPLYLFGVSYGAATALFTADKLGDQVAGVVAMESFANAGVAIRTMIPHLMALQPEGLKAQAIASYARWRYGSQDINQVVAAASRRIDVDLDKVDVARALADTRACVLLLHGQGDQHIPVSQGRALAQANPRAHYIEMRGEDHITLPLRLDLLAGVVDDWMARDEHHPKAACPAPQLPAQAEWLVHGVDTPAKTPARG
>CP023271.1|AVJ35247.1|1835300_1836647_-|alcohol-dehydrogenase
MRTPFKLAIALAATLAAAYGIARSTPYWFAPPQQAEVDIHDPALIEQGRYLSRAADCAACHTAPGGRPFAGGLGMQTPMGTLYSTNITPDTETGIGAYDYADFERAVRRGIRHDGQPLYPAMPYASYVIASDAEIKALYAYFMGAVQPVRQDNADSTIPWPANMRWPLAWWQLLFARPRSFSPDPTLDAGQQRGAELVEGLAHCGACHTPRGLAFQEKAMADDGSRQFLSGSVLEGWYAKNLRNEQTGLASWSEAEIVEFLRTGRTDRSAAFGGMADVVEHSTQYLSDADLLAMARYLKQLPAREGRSAQWTPGTDTTTAALRGGDYRVAGSLAYAEHCQACHRADGRGMPRVYPALAGNSIVFADDPSSLVQVTLTGGRTPHTAHDRMAFTMPGFEQLPNAQLADILTFIRNSWGNQASAVTELDVARMRRVVRDKPAHVVPQETAQ
>CP023271.1|AVJ32800.1|1834377_1835304_-|cytochrome-C
MRRLKKRSTVLIASAVVAVLLAGAGTLLYQHLYPDLDAEVARTLDILDSHGQVVGQYHVPSAEEIASLGNADAVMFGRRLLNETARLLPDNVGNDLNCNSCHMAEGKRPFGNHYLNTGGGSYPRYMPRPGREIGLAERINGCLQRSMNGKPLAKDAPEMRAMLEYMAWLSRPVPEGARVAAPSEGPIDSTLTPDPIRGQALYAAQCAACHGDNGEGRRDASGDIAFPPLWGERSFNIGAGMARLYKAAGFVKHNMPPATTREPPLGQQVMPDQDAVDIASYFINQPRPDFAGKAKDWPRDPKPKDARY
>CP023271.1|AVJ32809.1|1847189_1847858_-|DUF1275-domain-containing-protein
MGIRLPTWVWIGAVALSCVAGMVNVVGFLGFEHQAVSHMTGSTSQLGMALAQGDWRAVGHLWGLLIAFSLGAMVSGLLIQDSALQLGRRYGVALALESLLLLAAIPLFKQHQIWGALAAAMACGLQNAMATTFSGAVVRTTHLSGMFTDLGIGLGHLLRGLPLQVRRLTLSGLIISGFLAGGVIGAWLFVRWQYDALLAPALLTGLTGLGYVSYQQWARWRR
>CP023271.1|AVJ32810.1|1847868_1848375_-|hypothetical-protein
MNRCTRLLLPSLAVAIATLLGACATTQGPASVPTTERSGQSWVVTRPIIAAQVLDTCSRPSPGREAGRVSGYWAPSRQQVDQLEAKLASLEAQVPHVLDFDRQYVGIELDGKQVIYINAFHLPENNSLRPAREAVRVCDGGAQFWGAVFDPASGTFSELQFNGGFGGP
>CP023271.1|AVJ32811.1|1848371_1849772_-|phosphate-starvation-inducible-protein-PhoH
MTRGKRIYVLDTNVLMHDPTALFKFEEHDVYLPMQVIEELDNGKKGTTEASRNARQVSRFLNELVQASGLDNLAEGIPLQRPQGLQLRGKQSVGLLRFQTSHFDAGKSFGKVIPDNAILGAILALKEETPEIPVVFVSKDINLRIKAAIAGIVSEDYENDRALDDFSLLYTGATELPEDFWKRHGEDLRSWSDKGRTHYEILAQDGEEWYPNQYVYLPGEDEVELRVSRIVGDGKVVLSLVDDFRHGSHAVWGISARNREQNFALNALMDPEIDFVTLLGTAGTGKTLLALAAGLAQTMDQQRYREIIMTRATVSVGEDIGFLPGTEEEKMTPWMGALTDNLEVLTHNQEGGTWGRQATNDLLASRIKIRSMNFMRGRTFLSRYLILDEAQNLTPKQMKTLITRAGPGTKIVCLGNVEQIDTPYLTETTSGLTYAVDRFKNWPHSAHITLRRGERSRLADYASEVL
>CP023271.1|AVJ32812.1|1849856_1850336_-|peroxiredoxin
MNNGDTLDSTTLSLPLALSGGAQATLGDYAGQWLVLYFYPKDSTPGCTTEGIDFNALLPDFQKAGAVVLGVSRDSVKSHDNFCAKQGFAFPLVSDADEALCSAFDVIKMKNMYGKQVRGIERSTFLISPDSRIVQSWRKVKVAGHADAVLAELKANQSK
>CP023271.1|AVJ32813.1|1850427_1850988_-|transcriptional-regulator
MTDTTPRPAPSENHLLINAYTTHPESPLLSVTRRIADSGCNLVDARLATVGRDVSVTALATGSWDSVAKLEAMLTRLEREEGLKLVWYRTEAKQAQSNLLPYIVEVIAADKPGILFQLADFFDRQGITIETLQSTRYRAMQTGAEMFSAQVTIGVPANMHIAALRDDFLEFCDHLNLDAIMDPMKF
>CP023271.1|AVJ32814.1|1851152_1852046_+|4-hydroxy-tetrahydrodipicolinate-synthase
MSLSGLITALATPFRADGALDPDGWQRLLHLQLEGGVQGVVVAGSTGEAATLSDAEYDQLLASAVERIAGRVPVLAGTGLSGTAKTIEQTRRAAALGATHALVVTPPYVRPTQAGLIAHYRAVADQAGVPVVLYNVPGRTGCDMLPETVAELASHPNIVGIKEAVGDTGRVRALLDLRSPTFAVLTGDDGTAARSIQAGMDGLISVGSNVLPGAYRRMCDLAAARDHEAVESWDARLQPFHDFCGVESNPIPVKALLRRIGIGHDLRLPLLPLSAAHAPAADHLAGDIAALEALSSH
>CP023271.1|AVJ32815.1|1852078_1852594_+|hypothetical-protein
MRQSVSAVRVLSFALLAVATAAGTTGCFKRGVKGDYALAPEVRPLEVPPDLNLPAGAGNNQVPTLSSATKPATPAAATPAVSATGFTIAGSKDEAFAKVGTALEGVEGLTIATRAQLLGSYDVAYEGSNFLVRVVAVDAGAYISAVDPRGLPATAEAPVKLIAALKAKLAP
>CP023271.1|AVJ32816.1|1853082_1853406_-|ferredoxin-family-protein
MPFVVTENCIKCKHTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPVNAIFPEDDVPAGQEGFVALNAELAKEWPVLTVRKDPPADAGEWDGKPDKLKLLER
>CP023271.1|AVJ32817.1|1853592_1855017_+|MFS-transporter
MSPVQPGAASNGGENTAFIVLISCAATLGGFLFGFDSGVINGTVDGLRQAFNSSEAALGFEVASMLLGCAIGAFVAGWLGDRLGRRGVLIVAAVMFLVSALGAGAAHASWLFVCARVLGGFAVGAASVMSPAYIAEVASARYRGRLATVQQMAIICGLFAAFLSNYLLARAAGASTEPLWLGQEAWRWMFWMQALPSLLFLLLLLVIPESPRFLVMKGRQAQARAVLGRLYGERAAVNKQAEIEASLAQDQHKPRFGDLVNKATGKLRPIVWVGIGLAMFQQLVGINVVFYYGAVLWQAVGFSESDALLINVLSGALSIGACLLTVVLIDRIGRKPLLWVGSVGMSVALVLMVVAFASGSLAEGRLQLSDGMGRLALVAANVYVVFFNMSWGPVMWVMLGEMFPNQIRGPALAVAGAAQWTSNFAITVTFPMLLAGIGLAGAYGIYTVAAILSIIFVVRYVRETKGKELEQMEG
>CP023271.1|AVJ32818.1|1855602_1856982_+|polynucleotide-adenylyltransferase-PcnB
MGNPETSTGSANIISSATSPFSLRVIPRDQHTISRKDISPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVFGREIIEVATFRANIDDGSGDREMENGMLVRDNVYGSIEDDAIRRDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPVQRYQEDPVRMLRAVRLAAKLGFQIEEGTAAPIPQLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLFDVLFPESAKALKSNRTGALRRMLVEGLANTDARVANDEPVSPAFLFALLLWPAYCRAQATLLKQGVAPEEAQRRAADRVTVQQLSTIALPRRFSLPMQEIWLLQARFSSRQRKRVMRTLSHPRFRAAFDFLALRQVASAEHEADVAFWREAQAQSGHELDSSLDSLHSDAGDEEGGAPRKRRRRRRRPDGAAAGAAE

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Crispr_ID: CP023271_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023271_9

2118624-2118727

Orphan

Consensus_repeat	Method
GCCTGGCGGGGCCGCGGCGGTCGC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP023271_9

>merge|CP023271|9|2118624-2118727|CRISPRCasFinder
GCCTGGCGGGGCCGCGGCGGTCGCCACCCAGCCATGCCTGGCGGGCCCGCAACGGCCGCTACCCAGTAGTGCCAGGCCACGCCTGGCAGGGCCGCGGCGGTCGC

>CP023271|9|9|2118624-2118727|CRISPRCasFinder
GCCTGGCGGGGCCGCGGCGGTCGC	CACCCAGCCATGCCTGGCGGGCCCGCAACGGCCGCTACCCAGTAGTGCCAGGCCAC
GCCTGGCAGGGCCGCGGCGGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
CP023271.1\|AVJ33034.1\|2105683_2106673_-\|integrase	unknown	unknown	gnl\|CDD\|271189
CP023271.1\|AVJ35268.1\|2119125_2120253_-\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|237425
CP023271.1\|AVJ33040.1\|2123526_2124351_+\|chemotaxis-protein-CheR	unknown	unknown	gnl\|CDD\|224271
CP023271.1\|AVJ33036.1\|2107359_2108010_+\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ33039.1\|2120431_2123530_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|274362
CP023271.1\|AVJ33037.1\|2114899_2118601_+\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ35269.1\|2126576_2126864_-\|transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP023271.1\|AVJ33032.1\|2103077_2104610_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143448
CP023271.1\|AVJ33029.1\|2100970_2101741_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
CP023271.1\|AVJ33045.1\|2127415_2127829_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225264
CP023271.1\|AVJ35267.1\|2108852_2114903_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143586
CP023271.1\|AVJ33033.1\|2104970_2105687_+\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ33041.1\|2124350_2124926_+\|chemotaxis-protein-CheB	unknown	unknown	gnl\|CDD\|319752
CP023271.1\|AVJ33038.1\|2118769_2119129_-\|response-regulator	unknown	unknown	gnl\|CDD\|237425
CP023271.1\|AVJ33044.1\|2126981_2127419_+\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|225264
CP023271.1\|AVJ33042.1\|2124922_2126062_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223715
CP023271.1\|AVJ33031.1\|2102226_2103078_-\|3-oxoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|212491
CP023271.1\|AVJ33035.1\|2106853_2107171_-\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ33030.1\|2101748_2102039_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379388
CP023271.1\|AVJ33043.1\|2126144_2126573_+\|F420H(2):quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|377423

Protein	Function_ID	Function_description	E-value
CP023271.1\|AVJ33034.1\|2105683_2106673_-\|integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.57314e-17
CP023271.1\|AVJ35268.1\|2119125_2120253_-\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	3.06251e-69
CP023271.1\|AVJ33040.1\|2123526_2124351_+\|chemotaxis-protein-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	1.08119e-54
CP023271.1\|AVJ33039.1\|2120431_2123530_+\|histidine-kinase	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	7.71089e-71
CP023271.1\|AVJ35269.1\|2126576_2126864_-\|transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	4.06689e-12
CP023271.1\|AVJ33032.1\|2103077_2104610_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143448	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.	0
CP023271.1\|AVJ33029.1\|2100970_2101741_-\|SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.52368e-15
CP023271.1\|AVJ33045.1\|2127415_2127829_+\|hypothetical-protein	gnl\|CDD\|225264	COG2391, COG2391, Predicted transporter component [General function prediction only].	5.36365e-07
CP023271.1\|AVJ35267.1\|2108852_2114903_+\|hypothetical-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	1.8553e-19
CP023271.1\|AVJ33042.1\|2124922_2126062_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.85348e-35
CP023271.1\|AVJ33038.1\|2118769_2119129_-\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	1.72314e-19
CP023271.1\|AVJ33044.1\|2126981_2127419_+\|YeeE/YedE-family-protein	gnl\|CDD\|225264	COG2391, COG2391, Predicted transporter component [General function prediction only].	4.23255e-08
CP023271.1\|AVJ33031.1\|2102226_2103078_-\|3-oxoacyl-ACP-reductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.75753e-60
CP023271.1\|AVJ33041.1\|2124350_2124926_+\|chemotaxis-protein-CheB	gnl\|CDD\|319752	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheR and cheB have a strong preference to occur in the same operon, and a subgroup contains multidomain proteins with CheB-CheR fusions. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	3.21764e-84
CP023271.1\|AVJ33030.1\|2101748_2102039_-\|hypothetical-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	5.61821e-09
CP023271.1\|AVJ33043.1\|2126144_2126573_+\|F420H(2):quinone-oxidoreductase	gnl\|CDD\|377423	pfam04940, BLUF, Sensors of blue-light using FAD. The BLUF domain has been shown to bind FAD in the AppA protein. AppA is involved in the repression of photosynthesis genes in response to blue-light.	2.55975e-31

>CP023271.1|AVJ33037.1|2114899_2118601_+|hypothetical-protein
MSAHHSVVRRPARLHRAALYQALLLGLAATAQAAPPPANDASIDGAPIHCEGNQCSAAGDLLFTLRSRSFDEPVTEGTSTRSSSQVLQPDRRVSVALDEPGKATVRGEFMIRLPEGGAIWATEDPAMGQPELSISAPGMVAFDQGRIVRPVEFFVRGNYTAFIKRLEVSLYRGSDSDRVAPLATFELPVAAVGQGSWDGTLPASTPLRRGDRLVYVLRAYDDEGNVDETSAQSMQLVTLAEVERGNQQLRDALEDRRGTAVDANQAASLSLLEQVFDSNGLRQQNIPVYGSRVRLRGRDLPLGAALKINGESYPLDQDRKFAAEYLMPIGHHVFDVRVERPDAPAIARTLEVDVSGSYLFGVGLADVTVYQNKASGAGRDVARGERDDDVLSDGRLAFYLKAKTRGRYLLTAQADTQNRPLDELFTGFTTADPQDLFRSLDPDLYYPTYGDDSLTQRDVDSMGRFYLRMDWDKNQALWGNYNTGLSGTEYAQYVRSLYGAALSWRSRGANAWGDAQTELRLFGSQAETAPGHSEFIGTGGSLYYLRHASILRGSDQVVLEIRDRTTGRVEQRVSLVRGADYEIDALQGRILLTRPLAQVSRENLRRISRDVPLDGYEQRLIVDYEWVPTGFDNDDITAGVRGKHWFGDHVAVGATYVDEQRAGQDYSLRGADLTLQAGRGTYLKVEHSRSEATSAPVFFSDNGGLSFTRLNPEGPREGEATAVEARVNLRELGWTQRDWSAGAWWRQVEGGYSVGRFDTGQRVREQGAELLGYVTDDFSLYARYSEARRGNESLIQAQATAEWRIGDNDRVSAELRRVQEDRGIGSNAGVLAAARYTHRIGTALDIYGGGQLTVDDDHGRYADNDAVVAGGTYTFANLSTIGAEVSDGDRGSAAQVNAEYKLTPQHSFYGAFTQSTDRSEYDPLFSPNAQDGWTLGQRWRLSDQVNVFNESQFLKSGQESGLANTFGMDFYPAVGWNAGFTLSDGKLDASSGQVDRKAVSLSGGRTSPGTDWQSKLEWRRDTGAERRTQWVSTNRLSHRLNDSWRIAARFNYADTDDAINPVAGARFIEGNLGFAYRPWDNDRWALFGRYSYLYDLSTMGQINGVDYDQRTQVLSLEGVYRIDQRWEVAAKLARREGEVRYGRGTGPWFDSATNFGAAQLRYDLYYQWHGLLEYRLLDVRDGGRRQGWLAGVDRDVGRNFRVGVGYNFTDFSDDLTKFDYTHRGWYLNLVGRY
>CP023271.1|AVJ35267.1|2108852_2114903_+|hypothetical-protein
MPSSAWAAAYATGGTSPYRNTVLWLTWGGGTDLGTAGVTLNNGDTSSISMPVAAGINLSVSCSLANISGGGLLQSYRPGSFSGDSLDDLYNVGGTGGANQLIAGISRSTGTSSFEINCVSTLGGAPYRLRGVVMADAESINNSGEFVEASALGTWNVVEMRKNLSAGAYNVTKSSSGGNSVIRFGPGNDNNTAAVTFLNFDNAAHAPGNLAVNMGFSMRGGGTTAIAIGLLVPYADFGDAPQSYGDAMHVVDDLQFRPDGLPVNATPTNINTAGYTPGGLAPPLTDFLGTMGPDTEQKSSYSADAKGDDNFPSGNPNEENAWPASYVLTVMQAGTQISQPVACVGSGSVAGWIDFNRNGTFDPGERSNIAACSGGGANLSWTVPAQVSAGSSYVRLRYATNAAQIQQPTGVADDGEVEDHLITITAPALKVVKSNNATGGIWNYGQAGTQYTLTISNTTNVPTGNPPNVPAGVITVRDQLPAGIVPNWTGTLSSGSWSCTASGQAVSCTSSQVLSAAGTAGDSSSFTLPVTVSASASGLLRNHASVGGGYDPFNGGNPPAPGEACTDANHCTRSDVTVPVTRVSYAKRSNTAGPVAVGATVSYTVDVTIADGNSRDVLTLTDTLGTGLDFASVTNAGAFTCNAANPLVCTLPAGTVPGTYSLTYAATVNAQASGQVVNTVVGTGTDTPTCSSNCTTTTPVAAPRISVSKASTTAGPVAVGDSVAYTVSVVVADARTTAAVTLTDTLGTGLDFGSMTNAGGFICVPGNPLVCTLPAGTVPGSYAFSYTGIVNAQAVGQVRNAVVPSGPDNPSCVGSCDTTTPLASPQVSYAKLASTGGPVRVGDSIGYTLSVTVARSRTTDVVTLTDTLGSGLDFSSVASAGIFTCNAANPLVCTLPAGTVPGTYSLSYTATVNAQASGTVRNAVLGTGTDTPSCTTNCDTTTPVATPGVSYAKSVNSAGPVSVGDSLAYTLTTVVTNSRTTDVVTLTDTLGSGLDFGSVTSAGAYTCNAANPLVCTLPAGTAPGSYSLSYSALVNAQATGQVTNAVLGSGGDNPSCTVNCDTTTPVAGSQIDYRKTSAAAGAVKVGDSIAYTLTAVVSRSRTTAVFTLTDTLGQGLDFGSVTATTGFTCNAGNPLVCTLPAATAPGTYTVNYTATVNAQAKGSVSNAVLGSGTGTNTCATDCTTTTPVLAATVTYRKSSSTASPVNIGDAVDYSVEVVVANSQTTDVFTLTDTLGAGLDLQSVTQPGAFTCNASNPLVCTLPAGTAPGTYTLGYRAQVNAQASGSVRNAVLGSGGDTPTCAGTCSTEHVLAEPRVVLEKLSGPASGSEVRPGDRLRYTLRATVERASLRQPLQLLDTPDAGLSVDTLPAGCVQQGTDIFCTLPTGTPVGQHEFVYQAIVNQEARTEVLNRLRGQYPDGSPPPECTTCETRHKVVSDFALRITKTANPRLVKVGDLVRYQLVVENVGSSHWRDGVVVDTPPPGFSYVDGSMRVADDDGAFSLGGSQTPLRIGAVDIAVGRSATITYLLRVGAGVRAGNHINQAVATAGDGTPLSNVATAEVRMDADPLLEDSLVFGTVFDDRDGDGWQDSAELTGVRVQGGFAPAAYVPGSTTLDRGDGPQPLADASAPLLHGVQVGVVHGLASTSDTVESHQVVIRQRLRELSFTDDFVLESAQGHRLQLDAQGVTTVQRSGEAAKGLTAAEPAVHREIARVAEGYEVAYVIRNSGIQEQGIPGVRLATVEGLLIETDPFGRYHLADVHGGDARLGRNFIVKLDPATVPAGSGLTTENPLLRRVTQGVPTRFSFGVRLPPSPQAAAERAELALGEVLFAPGSSELRASYRPVLAKMAEVVDRYQGGDVVIAANGESQALAFARAVAVRDALQAEVAEGSRAGLTVQLRADVRDPHSLVAGVDAGGALLGNVLFDTDKAVIREEFKPLLAAIAARLEQMGGGQVSLVGHTDVRGSHAYNQALGLRRANAVFEALRVQLSPAVQQRLRVRNEETAATRAAAHQQEARR
>CP023271.1|AVJ33036.1|2107359_2108010_+|hypothetical-protein
MGDETDVRGAAPSLCADSLMHVSKWSLRSNFLLLTVLSIVFWVCAKRLHNPAAWQKVISGLSSFELLLGVGIVDVLLLGVALVFIPFADARSIYSKASKPMELLANAAIAFIALALVSGAFQCRVDWSVAASTVLALIILLFSLAGAGLLRQAASLQWNRSGPWIRDVIVYGGVTLAALGFIVWAFSYPWLVESLPARIQALAKLPFLLNFSCPWN
>CP023271.1|AVJ33035.1|2106853_2107171_-|hypothetical-protein
MPQKQISHTEGLPNGAAGHRARHIHALRGPGAGGGHLVECACRSTSKHADPDKAIEAWRRLNRPPRSARAPALPAVVDNVVQFNLSLAEQPTARRKVAGGAHGRR
>CP023271.1|AVJ33034.1|2105683_2106673_-|integrase
MAKVRLYWRGSKAYLDWAEGGERFRRSIGQPDAREAERIRAAKEAELTHGVRILARLPKVRDYLEWYLDWYEAEHPTTISKARSEVKRFIERFGQRPIDSIRAVEVEQYKRVRLLDDRAAKETVGKEIRRLKAAFNRGVEWKELDVNPLASVKAPRGVRSVAVKFYDRAAMRRLYRANPERAPLWLFMAHTGLRRGEIIGLEKSSAVAGRLLVESDPDESGEGRTKSGKWREVPLNRYARWALRHLPDPIVSVHKDTLSDWFKKDSELAGVGGHLHRLRHTFCAHMVMGGVPLRRIQILAGHADYATTEKYYAHLAPDGDDGAVARLRF
>CP023271.1|AVJ33033.1|2104970_2105687_+|hypothetical-protein
MESGKLFHQPRQKLKRAEAHIHEIERVIKTYFEGEWCSRELSRDADGKYHLSVVMRGMPDSLNEALGDAVHNLRASLDLLAVEVVRLNGGTSKGVYFPFADAAHNLEEVIRSRKWHLADPEDVDIVRELRPYKGGNQLLRALHDLDIQDKHLSLIENDASLSSGGIRVKVDENGMPIGFDDGDLEFELDPTSNPTASFVFQNDSAFPGEEVTDVLRRLASLVSDILDRFEARHKIPTA
>CP023271.1|AVJ33032.1|2103077_2104610_-|aldehyde-dehydrogenase-family-protein
MSSELLKSLGLDAINAGTYLGNGEWSSATGGELITPINPTTGEPIAQVRATTEAEYETVIARAQEAFKVWRTTPAPRRGEAVRLCGEALRKHKDALGSLVALEMGKSKPEGDGEVQEMIDIADFAVGQSRMLYGYTMHSERPGHRMYEQYQPLGLVGIISAFNFPVAVWAWNSFLATICGDICLWKPSNKTPLTAIASMRICNEALRDAGFPDLFFLINDAGTALSEKMVADKRVPLISFTGSTQVGRTVAEKVAHRLGRCLLELGGNNAIILDETADLKLAIPGIVFGAVGTAGQRCTTTRRLIVHESIHDDVLATLVKAYKQVEGKIGDPTDPANLMGPLNSDGAVQQFLASIEKAKASGGTIETGGTRIDRAGNFVLPAIVTGLKNSDEVVQHETFAPILYVMKYSTLDEAIDMQNGVPQGLSSSIFTTNLKTAERFLSAAGSDCGIANVNIGTSGAEIGGAFGGEKDTGGGRESGSDAWKVYMRRQTNTINYSDSLPLAQGIKFDL
>CP023271.1|AVJ33031.1|2102226_2103078_-|3-oxoacyl-ACP-reductase
MANGPAMHMGQSPSGDPTHAVPTTQGRIPTGAPTLDFTGRRVLIAGGSKGIGRELALAFARAGAQVSACARGQAGLDALQADAQAQGTQLHTFATDLGDLGRIGAWLQAAADALGGIDVLVNNATGYGMADDEDGWAASLQIDLMAAVRASRLALPWLRASSDACILNLSSIAAQQPRPGGAPYAAAKAALSHYTTSQALALAPDRIRVNAIAPGSIEFADGLWDRRRVEDPALYHGTLARIPFGRFGQPREIADAALFLCSPLARWITGHVLNVDGGQVLMG
>CP023271.1|AVJ33030.1|2101748_2102039_-|hypothetical-protein
MSVPPRQSNALAVVSLIAGICSWTVLPGVAALVAIITGHLARAEIRRRAGEQDGDGMALAGLIMGWLNILAAVGLAAILIFAMVAAGADAKPGLRW
>CP023271.1|AVJ33029.1|2100970_2101741_-|SAM-dependent-methyltransferase
MTSADSTERFSSRVADYVRYRPDYPPALMDWLHGPMAVATSALVADIGAGTGISSRQFLAAGHPLVAVEPNAAMRAAAEHWLAPQYPQFSAVDGRAEATGLADASVDLVGAAQAFHWFDTVAVRAEWQRILRPGGLALIYWNSRLLDASPFLVGYEQLLLDYGTDYTAVAERYQDDATMQAWFGSGLRGMVQLPNVQHLDLDALRGRLLSSSYAPQPGHPRHAPMLAALQDLFAAHAVDGQVAFEYRTRAFLGTLD
>CP023271.1|AVJ33038.1|2118769_2119129_-|response-regulator
MTDDPIRVLMVEDQTDLREMIGLALRDFGIDVATTADAQEAVALLQGDTRFDVVFSDISMPNGMSGIELSEHVARDQPQARMILSSGYARSQLPPLPEQVEFLPKPYRLRQLVELLRQA
>CP023271.1|AVJ35268.1|2119125_2120253_-|PAS-domain-containing-sensor-histidine-kinase
MLTDPSRQLRLLIDSVRDHALYLLDPDGIVCSWNPGAERIKGYRSEEVIGTHFGRFYLPADRDAGEPQHLLRLAAESGHHAAEGWRVRRDGSPFRASVVIESVVENSELVGFVKITRDITEQWQAQRLLRDAQRALRQTQQFETVGQLSRGLAHEFNNLLTTIVNALDLLSARMGDDERANALLTTAQAASDRGALLTRQLLAFSTGQTLIRETLDINARIRDWLPALQATCPAGVTLETALAADLPAILSDTVQLQTALANLVGNAADATVGGGRVLIATALEHRMDPDADTSRQRTYVTLSVCDEGHGMAPDIAERATEPFFTTKDIGKGSGLGLSQVFGFTTQSGGFVDVSTTPGVGTTVSLLLPATEEPNP
>CP023271.1|AVJ33039.1|2120431_2123530_+|histidine-kinase
MRPGATTRDRWIWMTSAVLVAATAALELVVPLGYAVWLAYFMAIGVTVFQRSARVPFVVAVSACVLLAVGYNVAPASNNSSFSFVNRSIGGAAFLMIALIASRAIQARREAMRALWLQEAENAVALSLRGELGPEQIAEAAVSTLATQLGADVGALYRLEGGRLQLTGGLALPNGIPATLGLQEGVAGQVARDQRARHLQGDEAAPLELQTSLGRVPVRERILAPVSSDGAIVGVLELGRAAVGEQRALDDELLERCAETIGMALRTSMLRGQLMVLLEESQRQGEELQAQQEELRVANEELEEQSRSLMQSQTHLEQQQAELEQSNVQLEERTHELEAQKQALLVAQGQLVRNSNELAATSRYKSEFLANMSHELRTPLNSSLILAKLLADNKDGSLSDEQVKYARAILSSNNDLLALINDILDLSRIEAGHVELADEVVVVDSVLQRLRETFEPMARQKGLTLQIESDGLAPSQLVADNQRLQQILKNLLANAVKFTEHGKVSLHVRSGGNGRIRFEVADSGIGIARDQLQLIFEAFRQADGSTRRRYGGTGLGLSISRDLAVRMGGDIQVDSEPGRGSCFILELPLQGAPAAEAAAGGAAPVPVQPVPATPVAPALLAQRSSAAPVAAVADDRGRRRHAGRLILAVEDDAVFAEALVTLAHELDFDCVVATTAEEALALAADLRPNGILLDIGLPDVSGLTVLERLKRNPDTRHIPVHVVSGMDRGQVARELGAIGFAIKPTTRERLVAAIEQLEQTSQRDVRRLLIVEDDNDLRRNLELLLGRDQLQIAAVGTLAAAVEQLSTVTFDCMVMDLSLPDGSGYDLLEHMAGNDDVGFPPVIVYTGRALSREEEQRLRRYSKSIIIKGARSPERLLDEVTLFLHSVEANLPSDQQRLLREARRRDTVLDGRTVLLAEDDVRNIFALSSVLEPLGVTLEIARNGQEAVDRLAQREVDLVLMDIMMPEKDGLQAMREIRAQRHLQDLPIIALTAKAMPDDRERCLQAGANDYIAKPIDVDKLVSLCRVWCSRQ
>CP023271.1|AVJ33040.1|2123526_2124351_+|chemotaxis-protein-CheR
MNEQALFDLELKVLLEALYQRYHYDFRSYAVSSLRRRVSQAMQRYECERLSDLQHRLLHEPELFAQAMQFFTVQVSEMFRDPEYFRQMREQVVPVLRTYPSVKLWVAGCSTGEEVWSLAILLHEEGLLERSIVYATDINPAALATAEAGAYGIDRLAQFSRNYLAAGGTASLSDYYSTAYDGAVFDRQLRRNVVFADHSLSTDTVFSEVHLVSCRNVLIYFNRDLQDRAVGLFREALVHRGFLGLGSKESLQFGRHHDAFEACSREHRLYRKVA
>CP023271.1|AVJ33041.1|2124350_2124926_+|chemotaxis-protein-CheB
MAAMFRPDVVVIGASAGGVAALQIVLGALPATLPVPVLVVLHLPRDRSSRIAEVLAPYCTLVLREAEDKQPLQAGTVTFAPPDYHLLVEDTQAIALSMDEPVLFSRPAIDPLFESAAAAFGTGVLAILLTGASSDGSDGVAAVRAAGGQAWLQCPEEAEASMMPASALQHAGADAVLPLELMCRRLKELFA
>CP023271.1|AVJ33042.1|2124922_2126062_+|hybrid-sensor-histidine-kinase/response-regulator
MNLLPPDPAQSQAPVNLLIVDDVPQNLVAMQALLRREGVNLLLADSGAQALELLLEHEVALALLDVHMPEIDGFMLAELMRGSQRSRDVPIIFLTASPDDPLRVFKGYETGAVDFLHKPVAPQVILSKVNVFIELYQQRQLLKARNEALERALKLNETMAAVLTHDLRTPLSAILLCADKLSLELPDDNAGAQQTLSYLEASTLRMARMVEQLLDFSRIRSGGLRLQSSVCDLAEVTRAVLVEAGAGHRSDRIALDVRGDSTLQGDMDRLGQIVANLVGNALTHGADATVQVQVDGGDARVVALRVRNTGHVDEALLPRLFEPFKASFHQSNGLGLGLYIVDQFVRAHGGKLSARNEAGHVVFEALLPRRSDLRSPAVS
>CP023271.1|AVJ33043.1|2126144_2126573_+|F420H(2):quinone-oxidoreductase
MPLRAIAYVSQAKPDLSAARLQTLVEDAARFNKMAGVTGVLLHDGERFLQYIEGPPDGIDSVYERILQAGSHVDIVELARGRLGQRQFPYWAMRGLPVDAAMLRQLSAGDWSGFARSVNGDSVVLTAVDLLAEVVRPVLSAG
>CP023271.1|AVJ35269.1|2126576_2126864_-|transcriptional-regulator
MATHAAQAAALLKSLAHPARLRVLCRLVEGEAPVPELQALTGLSASALSQHLAVLRNLDVVATRRQAQALHYRLLEGPALGVLQALHAAYCVPQR
>CP023271.1|AVJ33044.1|2126981_2127419_+|YeeE/YedE-family-protein
MTLPWAAIAGGGLIGASAVLLLATLGRVAGISGIAAGAAAAPRGDRGWRWAFLLGLMSAAAAVLSWQAGAGQPPRALLRDALPAWQLIAAGVLVGLGTRLGNGCTSGHGVCGLARGSRRSLVAVLVFMACAMLTTFLLRHGGGLA
>CP023271.1|AVJ33045.1|2127415_2127829_+|hypothetical-protein
MSRRLWAAGVAGGLFGAGLALAGMTDPRRVLGFLDVAGDFDATLAWVLASAVLVSALGQFWLRRRQRPWCAERFELPAAQAVDTRLLLGAALFGIGWGWVGYCPGPALAALAVGAREALWFVPAMAAGFWLHDRWLR

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Crispr_ID: CP023271_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023271_10

2247524-2247636

Orphan

Consensus_repeat	Method
GGTAGTGCCGGCCGCTGGCCGGCAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023271_10

>merge|CP023271|10|2247524-2247636|CRISPRCasFinder
GGTAGTGCCGGCCGCTGGCCGGCAGCCCGTTGAAACGAAGAACCCCCGGTGAGAGCCGGGGGTTTTTTGTGGTGCCGATGATGCCTGGTAGTGCCGGCCGCTGGCCGGCAGCC

>CP023271|10|10|2247524-2247636|CRISPRCasFinder
GGTAGTGCCGGCCGCTGGCCGGCAGCC	CGTTGAAACGAAGAACCCCCGGTGAGAGCCGGGGGTTTTTTGTGGTGCCGATGATGCCT
GGTAGTGCCGGCCGCTGGCCGGCAGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP023271.1\|AVJ33140.1\|2259447_2260221_-\|pilus-assembly-protein-PilZ	unknown	unknown	gnl\|CDD\|377813
CP023271.1\|AVJ33130.1\|2244930_2247522_+\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
CP023271.1\|AVJ33138.1\|2258204_2258588_-\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ33133.1\|2250378_2251452_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
CP023271.1\|AVJ33123.1\|2234954_2236637_-\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000
CP023271.1\|AVJ33139.1\|2258725_2259217_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|182587
CP023271.1\|AVJ33135.1\|2252041_2252911_-\|chemotaxis-protein-CheR	unknown	unknown	gnl\|CDD\|236725
CP023271.1\|AVJ33128.1\|2244256_2244481_+\|AbrB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|198034
CP023271.1\|AVJ33129.1\|2244487_2244889_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|224404
CP023271.1\|AVJ33134.1\|2251448_2252045_-\|chemoreceptor-glutamine-deamidase-CheD	unknown	unknown	gnl\|CDD\|237396
CP023271.1\|AVJ33132.1\|2248695_2250291_-\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ33127.1\|2243694_2244066_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225465
CP023271.1\|AVJ33126.1\|2240683_2243437_-\|aconitate-hydratase-AcnA	unknown	unknown	gnl\|CDD\|236445
CP023271.1\|AVJ33124.1\|2236738_2238211_-\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|183918
CP023271.1\|AVJ33131.1\|2247700_2248651_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236733
CP023271.1\|AVJ33137.1\|2255730_2258106_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
CP023271.1\|AVJ33122.1\|2232883_2234560_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|181546
CP023271.1\|AVJ33136.1\|2252943_2255208_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
CP023271.1\|AVJ33121.1\|2231849_2232722_-\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|236338
CP023271.1\|AVJ33125.1\|2238252_2238843_-\|transcriptional-regulator-BetI	unknown	unknown	gnl\|CDD\|179115

Protein	Function_ID	Function_description	E-value
CP023271.1\|AVJ33130.1\|2244930_2247522_+\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
CP023271.1\|AVJ33140.1\|2259447_2260221_-\|pilus-assembly-protein-PilZ	gnl\|CDD\|377813	pfam07317, YcgR, Flagellar regulator YcgR. This domain is found N terminal to pfam07238. Proteins which contain YcgR domains are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias.	1.77222e-31
CP023271.1\|AVJ33133.1\|2250378_2251452_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
CP023271.1\|AVJ33123.1\|2234954_2236637_-\|choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
CP023271.1\|AVJ33139.1\|2258725_2259217_-\|chemotaxis-protein-CheW	gnl\|CDD\|182587	PRK10612, PRK10612, chemotaxis protein CheW.	6.0909e-63
CP023271.1\|AVJ33135.1\|2252041_2252911_-\|chemotaxis-protein-CheR	gnl\|CDD\|236725	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR.	1.22279e-111
CP023271.1\|AVJ33128.1\|2244256_2244481_+\|AbrB-family-transcriptional-regulator	gnl\|CDD\|198034	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain. This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. AbrB is thought to interact directly with the transcription initiation regions of genes under its control. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator. DNA-binding activity in this AbrB homologue requires hexamerisation. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins.	2.21392e-08
CP023271.1\|AVJ33129.1\|2244487_2244889_+\|PIN-domain-containing-protein	gnl\|CDD\|224404	COG1487, VapC, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	9.00481e-13
CP023271.1\|AVJ33134.1\|2251448_2252045_-\|chemoreceptor-glutamine-deamidase-CheD	gnl\|CDD\|237396	PRK13487, PRK13487, chemoreceptor glutamine deamidase CheD; Provisional.	8.75355e-124
CP023271.1\|AVJ33127.1\|2243694_2244066_-\|hypothetical-protein	gnl\|CDD\|225465	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane].	4.53092e-05
CP023271.1\|AVJ33126.1\|2240683_2243437_-\|aconitate-hydratase-AcnA	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
CP023271.1\|AVJ33124.1\|2236738_2238211_-\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|183918	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.	0
CP023271.1\|AVJ33131.1\|2247700_2248651_-\|hypothetical-protein	gnl\|CDD\|236733	PRK10672, PRK10672, endolytic peptidoglycan transglycosylase RlpA.	0.00409174
CP023271.1\|AVJ33137.1\|2255730_2258106_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	4.90376e-106
CP023271.1\|AVJ33122.1\|2232883_2234560_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|181546	PRK08751, PRK08751, long-chain fatty acid--CoA ligase.	0
CP023271.1\|AVJ33136.1\|2252943_2255208_-\|chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	5.23821e-110
CP023271.1\|AVJ33121.1\|2231849_2232722_-\|enoyl-CoA-hydratase	gnl\|CDD\|236338	PRK08788, PRK08788, enoyl-CoA hydratase; Validated.	1.24952e-133
CP023271.1\|AVJ33125.1\|2238252_2238843_-\|transcriptional-regulator-BetI	gnl\|CDD\|179115	PRK00767, PRK00767, transcriptional regulator BetI; Validated.	1.36393e-101

>CP023271.1|AVJ33130.1|2244930_2247522_+|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MLEAYRHHVAERAALGIPPLPLTAQQTADVIELLKNPPQGEAEFLLDLLTHRVPAGVDDAAKVKASYLAAIALGSEQNPLISRERATELLGTMLGGYNVAPLVQLLDDASVGAIAADALKKTLLVFDAFHDVQEKAKAGNANAQAVMQSWADAEWFTSNPEVPQSLTVTVFKVPGETNTDDLSPAPDATTRPDIPMHALAMLKNKRDDAAFTPEEDGKRGPIQQILSLKDKGHLVAYVGDVVGTGSSRKSATNSVLWWTGDDIPYIPNKRAGGVCLGSKIAPIFYNTMEDAGALPIELDVSKMEHGDVVELRPYDGKALKNGEVIAEFQVKSEVLFDEVRAGGRIPLIIGRGLTGKAREALGLAPTDLFRLPVQPADTGKGFSLAQKMVGRACGLPEGQGMRPGTYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVKTHHTLPEFISTRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPVGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGVTLRDLVNAIPLYAIKSGLLTVAKAGKKNIFSGRILEIEGLPELKVEQAFELSDASAERSAAGCSVRLNKEPIIEYLTSNITLLKWMIAEGYQDPRSLQRRIEKMEAWLANPELLEPDADAEYAAVIEIDLADIHEPIVACPNDPDDVKTLSEVAGAKIDEVFIGSCMTNIGHFRAAAKLLEGKRDLPTRLWVAPPTKMDASELTKEGVYGTFGATGARMEMPGCSLCMGNQAQIREGSTAMSTSTRNFPNRLGRNTNVYLGSAELAAICSRLGRIPTKEEYMADIGVIAASGSEIYRYMNFDQIEEYQDVANTVAA
>CP023271.1|AVJ33129.1|2244487_2244889_+|PIN-domain-containing-protein
MIAVDSPVLVELLSNGPQADAVEACLRQSLVGGRVVVCGATLAEICAALRGGAEVLEALEEMGVHFNALEAKSALRAGEMHRRHRQRGGSQRRGLDEFMIGAHALLQCDGLITWNDTFYRDYFKGLKLIVPQA
>CP023271.1|AVJ33128.1|2244256_2244481_+|AbrB-family-transcriptional-regulator
MEATVAERGQITLPKAVRDALGLTKGTLLKVELEGSRIILRKSVDDAISRARGKFSLDGFESADAAVRDLRDEE
>CP023271.1|AVJ33127.1|2243694_2244066_-|hypothetical-protein
MRALALALVLAAPLAVSTTSAHANPFGAYTTGIEITQQQMDTLEVGKTTQDNIREKFGAPGRREQLGDTQVWYYDFVKIKSFGKNIQEATVLEFNKQGVLTAKSKSNAVGKTGNPLIDAANGK
>CP023271.1|AVJ33126.1|2240683_2243437_-|aconitate-hydratase-AcnA
MSDSFSTRSQLDVGGKTYDYFSLPKLGQRFDISHLPYSMKILLENLLRHEDGGVTVGKDHIEAVARWQPSAEPDTEIAFMPARVVLQDFTGVPCVVDLAAMRDAVVKLGGRPEQINPLIPSELVIDHSVQVDVFGKPDALDLNGKIEFQRNQERYGFLRWGQKAFDNFKVVPPNTGIVHQVNLENLARVVMTADKDGKAVAYPDTVFGTDSHTTMINGIGVLGWGVGGIEAEAAMLGQPSSMLIPQVVGFKLTGKLPEGATATDLVLTVTQMLRKLGVVGKFVEFYGDGLQHLPLADRATIGNMAPEYGATCGIFPIDNESLTYLRLSGRSEEQIALVEAYAKAQGLWHDANSPHAQYSTTLELDMGTVKPSLAGPKRPQDRVLLEDVQKNYRDALVGMTANRDKRSEDVSTFVNEGGGAAVGNEQLAKGYADIEMDGRKVRLKDGAVVIAAITSCTNTSNPAVMIGAGLLARNAAAKGLDRKPWVKTSLGPGSRVVTDYLEKAGVLTELEKIGFYVVGYGCTTCIGNSGPLPTEVSAGIASGDLVVTSVLSGNRNFEGRVHPEVKMNYLASPPLVVAYAIAGTTDIDLTTEPLGTGSDGQPVYLRDIWPSNKEIGDVIAATVGPEMFKQNYADVFKGDTRWNTIASPDGDLYEWSDASTYIKNPPYFDGMTMQVGSIDDVHGARVMGLFGDSITTDHISPAGNIKKDSPAGRFLQERGVQPADFNSYGSRRGNDDVMVRGTFANIRIKNLMFGGEEGGNTLYYPGNGGQPEKLAIYDAAMKYKADKVPLVVLAGKEYGTGSSRDWAAKGTLLLGVKAVIAESFERIHRSNLVGMGVLPLQFRNGENAQSLGLDGSEVIDVTGLQDGASKRATVTATKADGTKKTFEVSVMLLTPKEVEYFRHGGLLQYVLRQLAAR
>CP023271.1|AVJ33125.1|2238252_2238843_-|transcriptional-regulator-BetI
MPKKGVEPVRREQLIRATFQTIDEIGMADATVATIAKKAGLSSGIVAHYFGDKDGLLNAAMRQILRELKAAVARYRDAAAGDARSQLRAIVDGNFDDSQTNGTAMRVWLTFWAASMHQPELARLQRANDQRLFSNLCHQFNRQLPHAQARLSARGLAAMIDGLWLRGSLVGGDFNADKARRIAYGYIDFQLQANAP
>CP023271.1|AVJ33124.1|2236738_2238211_-|betaine-aldehyde-dehydrogenase
MTTLPVQQLYIHGRRVDATSGKTFQTVNPANGQVLADVQIASQADVERAVESASEGQKVWAAMTAMERSRILRRAVEILRERNDELAHLETLDTGKALAETTTVDIVTGADVLEYYAGLATAIEGIQLPLRESSFFYTRREPLGVVAGIGAWNYPIQIAMWKSAPALAAGNAMVFKPSEVTPLTAIKLAEIYTEAGVPDGVFNVVQGPGREIGNWLTEHPVIEKISFTGGVATGKKVMASAASSSLKEVTMELGGKSPLVICDDADLDRAADIAVMANFFSSGQVCTNGTRVFVPRSMLAAFEAAVVERVKRIRIGDPMAAETNFGPLTSFPHMENVLRFIESGKSEGARLLTGGGRATDGALAEGAYVLPTVFSDCRDDMTIVREEIFGPVMSILAYDDEDEVVRRANDTTFGLAAGVVSKDISRAHRIIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGISTLGHYTRIKSVQVELGDYASVF
>CP023271.1|AVJ33123.1|2234954_2236637_-|choline-dehydrogenase
MSTHNEYDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYKTDPEPFMNNRRMDCGRGKGLGGSSLINGMCYIRGNAMDYDNWAGMPGLEDWTYLDCLPYFRKAETRDIGPNDYHGGDGPLRVTTPKAGNNELFAAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPKGRRSSTARGYLDLAKPRPNLTIVTHALTDRILFSGKRAVGVQWLHNDQPQRATARREVLLCGGAIASPQILQRSGVGPADLLRSLDIDLVHHLPGVGANLQDHLEMYLQYECKKPVSLAPALKLYNQPAIGAEWLFLGTGIGASNQFEAGGFIRSDAEFDWPNLQYHFLPVAINYNGSNPIKAHSFQMHVGSMRSPSRGRIHVRSKDPREDPSILFNYMSHDQDWREFRSAIRITREIFAQPALAPYSGREISPGSALQTDAQIDAFVREHAETAYHPSCSNKMGHADDPMAVVDGQGRVHGLEALRIVDASIMPQVVTGNLNAPTIMIAEKLADVIRGRAPLPRSTAAYYKANGAPVRNKS
>CP023271.1|AVJ33122.1|2232883_2234560_-|long-chain-fatty-acid--CoA-ligase
MSLDRPWLQSYPKGVPAEIDVNEFHSVVSVFDASVAKYRDRPAYSSFGKTLTYGETDALVEQFAAYLLGELKLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTARELKHQLVDAGVTALVVVDNFGDTVEQVIADTQVKQVITTGLGDLLGAKGTIVNFVLKYVKKMVPNYHLKGAIRFKQALKLGSRHTLPKVEIDHDDVAFLQYTGGTTGVAKGAMLTNRNLIANMQQASAWISASGIEMGKEWIITALPLYHIFALTANGLVFMKFGGCNHLITNPRDMKGFVKELKSVRFTAITGVNTLFNGLLNTPGFDTVDFSSLKVTLGGGMAVQRAVAERWKKTTGVTLVEAYGLTETSPAACINPLTLAEYNGSIGLPIPSTDACIKDDNGNILALGEVGELCIRGPQVMKGYWQRPEETAKAIDADDWLHTGDMAKMDEHGFFYIVDRKKDMILVSGFNVYPNEVEDVIAMMPGVLEVAAVGVPDEKSGEVVKVVIVKKDPHLTAEMVKEHARANLTGYKHPRIVEFRKELPKTNVGKILRRELRDTPAP
>CP023271.1|AVJ33121.1|2231849_2232722_-|enoyl-CoA-hydratase
MSTIEKLPSSGSPYATIRTQDSADGAAHWLFMHADASTGVRPCCRKDMLDEMWSYMSAITRGPAQRHSGQLRHFVLASDAAAYNLGGDLDLFTRLIREGNRDLLLTYAQRCVEGVHHLHTGFGGDVRSIALIQGDALGGGLEMALACHTIVAEEGCGMGLPEVLFGLFPGMGAYSFLCRRVAPQLAEKIILDGRIYSAEEMHAMGVVDVLVRKGEGRGAVEEMIRQQQRLPQSYLAMNAARNLAQAVSYDELLEITKVWVDSALALGDRSLRTMDRLIKAQTRRANLDVA
>CP023271.1|AVJ33131.1|2247700_2248651_-|hypothetical-protein
MALRPACLTAAIAASLLLAPSAYAVDEAPTPVAASAVTSGASPDPATDATPVTDIAEAAPAAAAVAGPAVGDVTVAVAPALDLSSLQRVKVTSGLGVGPNGNRVGDHVLRLVMRGDTAAVTAAKVGLSALAFVTGVGDIGTSNSFSKNNVRGEDIQSVPSPAFGALPGMIREQLALYFTAHPGAIPSDERTVEASAGQWSLVYQKLSDAETPYELRHDVTIGFPLVRKLFRSASGGQGVHCQDEARVAPLQEWQADDYAKAKAASREFAEACIVRFVAELPRLFPDHGALPETAAEPELPMDTPAVTEEAAAAAQA
>CP023271.1|AVJ33132.1|2248695_2250291_-|hypothetical-protein
MAQRRFPTRTSLLTAALLAPLAATSAAQSAPPHTTPVAATATATTTDHPAPWTDRVQIQSGPAGALKRMHAPDVALRIVTPDDSEALTPKGLALLFSGNEPDYFQRNNLPGSIIEGQASPAITLMPNVAKALVGGYFRYAPDALPAQTSTLRFSADTWALVHQGNTRKDPLYRLNHSSTIQQRRADGSLAEIISCNDSDDRATLGAWQADDYARLKGAAQMITMKCIEKLVKRIPAMYPRPLAAEDVSAYADGAAPPARVRVYAALGRTTTLYTDAACREDYRDRIDVKYNNAGDKGVLGIPVTETLRSKENERFSTLSYQEYEVPGGKPLIFEARFDASSRVYCDGKLSGQFVAGPGQDYEVEFEVADKICRLHIRQVHADGSMTPQQSRATPTICEGTRAPVRIEPRQDMQVLLFSPGELQIQDANQSSAPKQLSDDTGSSEALQQMLQQASSKPGTRLCVVVPAADYSSVLHDAVRERVLDAPQVLPSLWEETSTVNQRRNAAADAPVDIAAAVTRCKAFPIKEFAAQ
>CP023271.1|AVJ33133.1|2250378_2251452_-|chemotaxis-response-regulator-protein-glutamate-methylesterase
MTLTGNAPCRVLIVDDSAVVRQMLTEILSSDPAIDVVGTAADPLLAREKIKRLAPDVITLDVEMPRMDGLAFLENLMRLHPLPVVMISSLTERGADTTLQALGLGAVDFVSKPKLDVARGLQGYADEIIAKVKMAARSRVRPLVRVATPKLTLDAAPAARPAATQFRTTDRLIAIGSSAGGTEALRVVLEGMPADGPAVVMTQHLPASFSTAFAERLDRHSAMAVREASDGEAVLPGHAYLPPGGKHLRIIRDGARWRCRVDDGPAVNRHKPAVDVLFRSVAQSAGGNAIGAILTGMGDDGARGLLEMRQAGAPTLVQDEATSVVWGMPGAAFKLGAAEEQVPLERIAERLLALARG
>CP023271.1|AVJ33134.1|2251448_2252045_-|chemoreceptor-glutamine-deamidase-CheD
MNASLRTDDVMRYQDARFKTIAAKLLPTQYLVVDDTTALTTTLGSCVAACLRDPVLKIGGMNHFLLPEGNAGDGAPARYGSYAMELLINDMLKRGAHRKRIEAKVFGGANVLKGFTSNPVGTRNAEFVRQYLQAEHIPILAEDLCGIHPRKIWFFADTGRVVVQRLPHAHEAEVAATESAVRARLSKAPVTGGVELFE
>CP023271.1|AVJ33135.1|2252041_2252911_-|chemotaxis-protein-CheR
MDTSPVQSPTPIVSGTREFEFADRDFRRVCDLIYQRVGIALAPAKRDMVYGRLSRRLRTLGMRSFQQYLDHLEQGDGDEWQAFTNALTTNLTAFFREPHHFDKLREELQQRNGRGPLLLWSCAASTGEEPYSMAITACEAFGTLKPPVRIVATDVDTQVLATAGRGVYNIDRVAGLDPDLRRRYFQRGSGPNEGQCRVLPALRELIEFRPLNLLAPRYDVGGPFDALFCRNVMIYFDKPTQRAILGRLVNHLADDGLLYTGHSENYLHAADLIQPCGRTLYRRAAKAGA
>CP023271.1|AVJ33136.1|2252943_2255208_-|chemotaxis-protein
MNLLHRWQHYFSNLSVRRKLNLLTLLIALGVIALSVIAARMQYLDLNETRKSSLKTQVELTYGILDHYHGLAASGELTEPAARQAALDALARMRADSDTYYYSVYDTNYRVLMHPFRKDLIGKDMKDFRSEDGVQLFHDLVEVARKGGGVVSYKWAKANSEGLYDKASYAGLFKPWNWVVSSGVYMDDVQQQALVFTAIMTLSGGVLVLIVLALSWVIGNRIARPLKQATAVAEGIAGGKLDSHIGPQPHDETGRLLEAMSRMQQQLHAVISGQREMARRHDGGELSYRIDASSFPGEYGLMVQETNVLVGSHVQTLHDVLNVVQQYAVGDLSSDIARYPGEKAAMTTTVDTVKANLGRINAEIKQLASAAAAGDFSQRGDAQRFDHDFRTMLENLNAMMAVSDDNLGKLSQLLSSIADGDLTARMHGDYQGVFARMRDDANATVSQLTQIVGQIQASASSITLSAGEIASGNSDLSRRTEQQAANLEETAASMEELTSTVRQNAEHARQANQLAIGAHGVASQGGSVVGQVVTTMSAIEASSKKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKGLIDDSVGKVAEGSSLVHQAGSTMGEIVASVQRVTDIMAEISAASQEQSAGIEQVNQTVVQMDETTQQNAALVEEATAAARAMEDQAAQLADAVAIFRLDNQVAVAVKAVTAKVAPKAASPAPSRPLSTPAPIRRTHSSTVVSNDGDWQEF
>CP023271.1|AVJ33137.1|2255730_2258106_-|methyl-accepting-chemotaxis-protein
MPWINNLKLMPKLMLTFGVLLLVMLLQGIVAYRGLHSLNNVTTELAGSRMESIRMAGEMRGMLGEYRNSAYQQLIRASDDVKADARKQAVELRTSMDKSIKDYPKLVDNAQQKKLFDTFAKDWKDALASYDSVTEMLELDLPDDAIDTFVGETRTKHRKAGAALEALIAEDNRLARASRDEAASTYSASAVLTVIALLGGAALGLVLVWLFARALVGSVRGAVSVANDVAGGKLDGHIDVSRQDEVGELMQAMQRMQRDLRERTETDQAIARENLRIRTALDYSSTGVYLTDPNNTIVYSNRALQQTLAQYQDELRRDLPDFDVHASLVGKPVTVLEHRGEMDNTLLANLKQHGVARRPMQYGDAQFAQVVSTIRNEDGDTVGYVVEWRDRTQEAQVEAEVARVIAQAAAGDLSGRIDANDKEGFFLQLAQQINGLLDANSGSIEQISGLLAALSQGDLTVRMHGDYQGVFARMRDDANATAAQLSEIVTRIKQSSRAISSAAGEIASGNSDLSRRTEQQAANLEETAASMEELTSTVRQNAEHARQANQLAIGAHGVASQGGEVVGQVVTTMSAIQASSKKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKGLIDDSVGKVNDGSALVHKAGATMGEIVASVQRVTDIMSEISAASQEQSAGIEQVNQTVVQMDETTQQNAALVEEATAAARAMEEQAGHLSEAVSIFVVDEAEAVVATRAPAPRASAPAAPAPAAAAPPARRSTGGRSMATELADGDWQEF
>CP023271.1|AVJ33138.1|2258204_2258588_-|hypothetical-protein
MKSLLAFVSAAVLATTASSAFAQSAEMIPPEMAPRAVGKDGMVCGKVEKARFAEGSEGQPTFLYMGGAFPRHTFSARIAGENRGKFSFPLETLEGKTVCVIGKIQRDASRAEIEVSSPSSLKLANIK
>CP023271.1|AVJ33139.1|2258725_2259217_-|chemotaxis-protein-CheW
MNDKNSSAAGADGEFLSFTLGAEHYGVDILKVQEIRGYDAVTRVPDAPDYIKGVINLRGTIVPVIDLRLKLRLEDARYDAFTVMIVLNVEDRVVGIVVDSVSDVIPLSAEQIRPTPEFGAAVDTRFISGIGTHDDRMLILLDIETLLDSADMGQTNVVEDAAA
>CP023271.1|AVJ33140.1|2259447_2260221_-|pilus-assembly-protein-PilZ
MSDGHDTALPEVHAADAADDRFLVRNPRQVRQLLRSLIDQRSLINAHIDGRDRSFPTALLELDDDEDFLLLDGSPQEASNRAAEQSDHLLCFAQLERVLVRFRLHDLQRVDNEGHVAFRAPLPDELVHLQRRELYRLETPITDSPQLLLPPGEARAEALSMRVVDISGGGLAVTVPTDCAIFSLQQRYRAQLSMPDGPDLQIELVVCNLLPQRLPNGTEVKRVGMRFDDLPRGGDSAIQRYIFRIDRQRKARRNGEL

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Crispr_ID: CP023271_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023271_11

2712007-2712098

Orphan

Consensus_repeat	Method
TGGTAGTGCCGGCCGCTGGCCGGCAACCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023271_11

>merge|CP023271|11|2712007-2712098|CRISPRCasFinder
TGGTAGTGCCGGCCGCTGGCCGGCAACCCACGCCAACGCACAAGCCCATCGCGCCTGCCCCATGGTAGTGCCGGCCGCTGGCCGGCAACCCA

>CP023271|11|11|2712007-2712098|CRISPRCasFinder
TGGTAGTGCCGGCCGCTGGCCGGCAACCCA	CGCCAACGCACAAGCCCATCGCGCCTGCCCCA
TGGTAGTGCCGGCCGCTGGCCGGCAACCCA

Protein	Signature genes	Signature genes Name	Protein_function
CP023271.1\|AVJ33516.1\|2719295_2720489_-\|isochorismate-synthase	unknown	unknown	gnl\|CDD\|224091
CP023271.1\|AVJ33515.1\|2717646_2719299_-\|2,3-dihydroxybenzoate-AMP-ligase	unknown	unknown	gnl\|CDD\|223952
CP023271.1\|AVJ33509.1\|2709739_2711200_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379191
CP023271.1\|AVJ33502.1\|2700631_2701549_-\|peptidase	unknown	unknown	gnl\|CDD\|349450
CP023271.1\|AVJ33519.1\|2723242_2723722_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
CP023271.1\|AVJ33505.1\|2704617_2705277_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181620
CP023271.1\|AVJ33514.1\|2717014_2717647_-\|2,3-dihydro-2,3-dihydroxybenzoate-synthetase	unknown	unknown	gnl\|CDD\|238495
CP023271.1\|AVJ33512.1\|2712882_2716761_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|236668
CP023271.1\|AVJ33504.1\|2702356_2704621_+\|DUF802-domain-containing-protein	unknown	unknown	gnl\|CDD\|378817
CP023271.1\|AVJ33506.1\|2705266_2705644_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378663
CP023271.1\|AVJ35315.1\|2706690_2707095_+\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ33517.1\|2720485_2721682_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340888
CP023271.1\|AVJ33503.1\|2701692_2702346_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378731
CP023271.1\|AVJ33518.1\|2722252_2723188_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274657
CP023271.1\|AVJ33508.1\|2707398_2709717_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP023271.1\|AVJ35316.1\|2721834_2722146_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378962
CP023271.1\|AVJ33510.1\|2711423_2711867_-\|transposase	unknown	unknown	gnl\|CDD\|224854
CP023271.1\|AVJ33511.1\|2712127_2712892_-\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	unknown	unknown	gnl\|CDD\|275120
CP023271.1\|AVJ33507.1\|2705879_2706200_-\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ33513.1\|2716757_2717015_-\|phosphopantetheine-binding-protein	unknown	unknown	gnl\|CDD\|225967

Protein	Function_ID	Function_description	E-value
CP023271.1\|AVJ33516.1\|2719295_2720489_-\|isochorismate-synthase	gnl\|CDD\|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	3.15173e-101
CP023271.1\|AVJ33515.1\|2717646_2719299_-\|2,3-dihydroxybenzoate-AMP-ligase	gnl\|CDD\|223952	COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	0
CP023271.1\|AVJ33509.1\|2709739_2711200_+\|hypothetical-protein	gnl\|CDD\|379191	pfam13449, Phytase-like, Esterase-like activity of phytase. This is a repeated domain that carries several highly conserved Glu and Asp residues indicating the likelihood that the domain incorporates the enzymic activity of the PLC-like phospho-diesterase part of the proteins.	1.57e-31
CP023271.1\|AVJ33502.1\|2700631_2701549_-\|peptidase	gnl\|CDD\|349450	cd06231, M14_REP34-like, Peptidase M14-like domain similar to rapid encystment phenotype 34 (REP34). This family includes Francisella tularensis protein rapid encystment phenotype 34 (REP34) which is a zinc-containing monomeric protein demonstrating carboxypeptidase B-like activity. REP34 possesses a novel topology with its substrate binding pocket deviating from the canonical M14 peptidases with a possible catalytic role for a conserved tyrosine and distinct S1' recognition site. Thus, REP34, identified as an active carboxypeptidase and a potential key F. tularensis effector protein, may help elucidate a mechanistic understanding of F. tularensis infection of phagocytic cells. A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.	1.61117e-58
CP023271.1\|AVJ33505.1\|2704617_2705277_+\|hypothetical-protein	gnl\|CDD\|181620	PRK09040, PRK09040, hypothetical protein; Provisional.	7.80121e-139
CP023271.1\|AVJ33519.1\|2723242_2723722_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.44051e-35
CP023271.1\|AVJ33512.1\|2712882_2716761_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|236668	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF.	0
CP023271.1\|AVJ33504.1\|2702356_2704621_+\|DUF802-domain-containing-protein	gnl\|CDD\|378817	pfam12128, DUF3584, Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.	0.000107187
CP023271.1\|AVJ33506.1\|2705266_2705644_+\|hypothetical-protein	gnl\|CDD\|378663	pfam11445, DUF2894, Protein of unknown function (DUF2894). This is a bacterial family of uncharacterized proteins.	4.79036e-20
CP023271.1\|AVJ33517.1\|2720485_2721682_-\|MFS-transporter	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.57208e-39
CP023271.1\|AVJ33503.1\|2701692_2702346_+\|hypothetical-protein	gnl\|CDD\|378731	pfam11828, DUF3348, Protein of unknown function (DUF3348). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 244 to 323 amino acids in length.	1.33406e-53
CP023271.1\|AVJ33518.1\|2722252_2723188_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274657	TIGR03571, lucif_BA3436, luciferase-type oxidoreductase, BA3436 family. This family is a distinct subgroup among members of the luciferase monooxygenase domain family. The larger family contains both FMN-binding enzymes (luciferase, alkane monooxygenase) and F420-binding enzymes (methylenetetrahydromethanopterin reductase, secondary alcohol dehydrogenase, glucose-6-phosphate dehydrogenase). Although some members of the domain family bind coenzyme F420 rather than FMN, members of this family are from species that lack the genes for F420 biosynthesis. A crystal structure, but not function, is known (but unpublished) for the member from Bacillus cereus, PDB\|2B81. [Unknown function, Enzymes of unknown specificity].	4.13919e-115
CP023271.1\|AVJ33508.1\|2707398_2709717_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.26001e-42
CP023271.1\|AVJ35316.1\|2721834_2722146_-\|hypothetical-protein	gnl\|CDD\|378962	pfam12823, DUF3817, Domain of unknown function (DUF3817). This domain is of unknown function. It is sometimes found adjacent to pfam07690 and pfam03176 which are both transporter domains.	1.85067e-18
CP023271.1\|AVJ33510.1\|2711423_2711867_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.73454e-10
CP023271.1\|AVJ33511.1\|2712127_2712892_-\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	gnl\|CDD\|275120	TIGR04316, 23-dihydro-23-dihydroxybenzoate_dehydrogenase, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase. Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase.	6.81706e-117
CP023271.1\|AVJ33514.1\|2717014_2717647_-\|2,3-dihydro-2,3-dihydroxybenzoate-synthetase	gnl\|CDD\|238495	cd01013, isochorismatase, Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.	6.95634e-96
CP023271.1\|AVJ33513.1\|2716757_2717015_-\|phosphopantetheine-binding-protein	gnl\|CDD\|225967	COG3433, COG3433, Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism].	7.34205e-11

>CP023271.1|AVJ33510.1|2711423_2711867_-|transposase
MSSDLLRHGRRSIIGQVYVLTTTTCQRRRRFECGATAGCVSSQFEELERQGLVQSLAWVVMPDHVHWMLQLRASELSGIARRFKSSSALALNRLVGRRGVVWQSGYFDHAVRAEESLHRQALYILGNPIRAGLAREIGQYPYAWSIW
>CP023271.1|AVJ33509.1|2709739_2711200_+|hypothetical-protein
MSVTALLLAALSVSGYNAPHEARGMPPRAVDVASFTYVDKGLVAAGRLPAGTVDFLGDTLGSFSSLAVQPGTWRRTARGYEGVLWTLPDRGRNDPEAGLFYDYAGRLERMQLRIDWPAGKPESFGTLTMKPEKGLVLKDYNGQPFTGADPGDHTIIQRGVVLPSPAVGAGAGKVALDAESLQFTADGHFYIGDEYTANVYYFNAQGQLQGVIVPPQAIQPQRDGKPAFGSLAPPQTGRRNNQGVEGMGLSPDGTRLFVALQSALMQDSAAGNAAGRINTRVLVYDVSANPTPTQPVGHHVMILPAYAHDGKGKLDRTAAQSELRALDNERFLMLARDGNGLGKESDDPIVYKSVLLVNVAQASNLVDTAYETGTASVLADPADAMLKTGIVPANVKEVLNLLDRPQLARAGLDLDTGRGPHPGLLSEKWEAMDVLPALDPEHPNDVLLLIGNDNDFTARNCRMQGEHCDSAYDNDNRVLVYRLTLP
>CP023271.1|AVJ33508.1|2707398_2709717_+|TonB-dependent-receptor
MTKTLLAAALSIALAPAAWAQDAVPTSTGTSATELDAVSVIGSGEARQVQRITRENLDILPPGTSLQKTLNLLPGVNAQSADALGTNEQSMTLSLRGFNSTRLGYTLDGVPLGDGAYNNYNGLTINRALISENMAGAELAVGIGSLGTPSTSNLGGTISYTSDRPAQELGGRVVQTFGSDANRRTFVRVDSGEYNGFSGYVSGMNAVSDLWNDQTAYNKSTTQQFNAKGVWNFGSGQITGFVDTSRTSQADYFYLSKDEMSRGLGWDWGGYAPDWNKAVAKAYCNTASLNAKKCDNSGPDRDADGAFTAGQILRDDNLYYLAGDFFLADGFSLRALAYHHDDRGEGHNWNSGAWSNKGTAQEIPIIFRNTIYTIDRDGGTLSFDWELGAHRLEGGLWYERNTSSAERYQTAVDGPRDLSGMNTLPSDVGVFAQRTRWKTHQFFLKDTWRLLDDRLTLEFGAKSPHATSDAQALPGDAKTPILPSSNNQFATGSLKASRNFLPSVGANFRLSEHHEVFASYAENIAMFQGGFKLGPQAVSQATWNAQGNLKPEESRSLEAGYRFVTDTLQASVAAYSVRFDNRLLQYNPCDSRQPVGPTCGNRFYNVGGVDSRGAELTVLWTPNEHFSWYTSASLNRSTYASNYTQAGVEQQIKGKIQTDTPKQLLATEITWRDNGWFASLRGKYTGERFYTYTNDQGFGGFTVFDLAGGYDFGQVGFAKGMRLSLNVTNVGDKRYASNLDSSVFAPSDPAGKLYVFHASAPRQVFGTIDIRF
>CP023271.1|AVJ35315.1|2706690_2707095_+|hypothetical-protein
MYIGPQLERADIQALQAATLSTLGTAFPESYLDFLSNHDGLVAEGVFLYSGISRPYSDGGSSLALIEMKLLARDRGFMAGYVEHGESDMDCYVFESGTGRHQVRDKVAFDNVCEEFVSFDGLLSHIFDLIEQHC
>CP023271.1|AVJ33507.1|2705879_2706200_-|hypothetical-protein
MQAARRMNMRNQLETVERHLAQRKCLWLDCEYAEGDAIYRREFFIKRHGGVLHVGLDEYLDGYEDAIDLYRRYVRASFDTLYEAMDFVLGELGMNESDIVAGCKLG
>CP023271.1|AVJ33506.1|2705266_2705644_+|hypothetical-protein
MAAESSPLEGLRALVRDLDTGSRSLLHYPQVPMLDDVRREWSELRSELQVRRSLRTEAPADGGPLNSAVLVQRMLDTMQATSPGYLRHFIDYVDTLSWLQALHDGAASSGDAAKPKRTRKPRNAG
>CP023271.1|AVJ33505.1|2704617_2705277_+|hypothetical-protein
MSDELEVDGGSHAPIWAAFGDLMSVLLGAFVLILVGVVAVQLELSQRLDQEVKQRQAEAKRLQTLEQALAGPLAAGRVTLVNGRIGISGSVLFALNSDQLQPEGQELLRSLAAPLAAYLGTREEILMVSGFTDDAPVREGNRRFADNWELSAQRSLTVTRTLIADGVPADAVFAAAFGSEQPVSSNANEDGRARNRRVEIAPIPKPKAAAPGEKNGNGS
>CP023271.1|AVJ33504.1|2702356_2704621_+|DUF802-domain-containing-protein
MSRTVFHVLVFLAGLLAVCWIGVGYVSVHPLGAAVAAIIAACYIAGGVELYRYRQASNGLRAALADLSLAKESLAPWLERVPLGLRNAVRLRVEGERTALPSPVLTPYLVGLLVLLGMLGTLLGMMDTLRGTGLALQSATDMAAIRGSLASPVQGLAVAFGTSIAGVASSAMLGLLSALLRRDRLQVVQQLDRAIATDLHPYSQAWQRAESLRLLQSQSAALPTLIDRLQAMTSTFEQHSAAANERLLAGQAEFLTQSQALQERLATSLQQSLREGAEASAAAIGGALQPMAQTTLAGLASHGQALHSRVEQAVQQQLNGLAEGFERSRVATEASWAKVVAEQTGAQQALVAELRQHLQSFSEGQSTQGEALVARIGERLQADASSNAEAWRAAAEQQQALNSELVERQQQALQHASSHLDDRAQALLQALDERHAAGQSLLQEHEQQRLQDWQAAQAATATAHAELQAGLDAREQQRQLRWDAVSTELQQAHAALQAQLLAGDEQRLQRWSDALQSVSTDLAERLQANGQRLAEQQQQVCDTLAQTAQQIGENGRAQASATLAEVSTLLQTAAAAPKAAAEVINELRSTLSESLVRDNKMLEERGHLLATVQTLLDAINHASHEQRTAVDALVGGSAELLERVGNRFSDHIAAETGKLDGIATLLNGSAGEVGQLAGTFGAAVEQFGTASAELTGRLEQIGGALDASLARSDEQLAYYVAQAREVVDLSLLSQKQVMEELQQLAARRGKAGSA
>CP023271.1|AVJ33503.1|2701692_2702346_+|hypothetical-protein
MANAAQPVVDGPDFLRLLARLSDGAMPASSPALTDRLGQWVDWSRAVALAGALDGRLAEPAEAAEALDDLLADCAQAEASLLASLSEDAEAERLLDLAEAAAAPNFASLRQRYRVLQQAIQTATGRLRGRLRDQLVQASPELARLAEVDAVMEQTLSPREHSLLATAPAVLGARFERVHGQPGWRASFRHDMRTLLLAELQLRFHPIQGLLSALRSH
>CP023271.1|AVJ33502.1|2700631_2701549_-|peptidase
MTVAQFYPIGTPGQPWGDAERAQWRARQKRQRSYHEDVVTALERLDERFDVVQYGQLDYAPDHYPLFAVVNHDWNPALPTALVTGGVHGYETSGVHGALQFLEQHAERYLGRFNLIVAPCVSPWGYERIQRWNPNAIDPNRSFRDGGLIEEAASLMRWVAERKANIRVHLDLHETTDSDLHEFDPARCARDGKPFERDTIPDGFYVIGNSEDPQHEFQKALIAAVAPITHIAPADAEGNLVGMPLQSPGVVWGESRSIGACAGFTDALYATTTEVYPDSPRTNPQECNDAQVAAVCAGLDFALAN
>CP023271.1|AVJ33511.1|2712127_2712892_-|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase
MQLTGFEGNVALVTGAAGGIGAALVGQLLDAGCRVVATDRERPALAADDGRVQAFALDVTDGAAVDALVNQVEATVGPIMLAASVAGVLHVGEVVDTRDADWRRVFAVNADGVFHVGRALARVMSPRRQGAIVTVSSNAAGVPRHGMASYAASKAAATMFTRCLGLELAPLGIRCNIVAPGSTLTPMQTGMWEDEQGAARVIAGNPATYKAGIPLRKLATPEDIAQAVMFLLSEQAGHVAMSDLYVDGGATLRG
>CP023271.1|AVJ33512.1|2712882_2716761_-|non-ribosomal-peptide-synthetase
MNGSPLPLTEAQAGLWFAQRLAPQNPAFNTAHAVWIEGSLDVPAFTAAANQAAVEAEALALRFAEAEDGQPVQWHEPARVPLLQLRDVAAADDPQQMARAAMLADRCSAVDPTRDRLSQQVLFDLGGQRWAWYLRVHHLATDGYGMALFTDRVCALYAGRTGSALPGLAGVLADDASYRSDARRDVDRQWWLQALQGAPASTGLAGTAAASDDALRWVQPVAPALRERLLQVSASWLQPWPDVLAALAAEYVRRMSASEEVVLGVPYMARLGNAAARVPAMVMNVLPLRVAGGEGGVEEFCRCIGRQLSQSRKHGRYRGEQLRRDLGLVGAQHRLHGPLINVQPFYKPLALPGVQASLEVLSTGPVDDLTLGFRGDGQTLLDLEIEANPALYGLDDMKAHARRLLHFVSAALLAEDIATVPLATPEESKQVVHGFNATTHALPDTTLVELLQQGMDRDPSAAALVFGDTTLDHAALEARSFALAAQLRSLGVGPGTVVAVALPRSLELVVALLAVLRAGGAYLPLDLAHPAERLARILASAQPVCVLAEAGVQSPLSDVPVLPPEQWTDLSFAAPWPGPMGDDAAYVIYTSGSTGEPKGVVIEHRAIVNRLLWMREHYGIGADDRILQKTPATFDVSVWEFFLPLLCGATLVLAGPDAHRDPTELARLIRVHGVTTAHFVPSMLDAFLAAPASQDLRLRRVFTSGEALDAALRDRFHARMQSELHNLYGPTEAAVDVSWWPASADDRSRPVPIGFPVWNTRLYVLDARMQPVPVGVAGDLYLGGVQLARGYLGRDDLTAERFLADPFLPGERIYRTGDVARWRGDGAVEYLGRSDHQVKLRGLRIELGEIEAALRELPGMDRVEVLLRDDLPGEARLVAYVPTALFDAAALRSHLLARVPDYMVPSAFVGVDQWPVTANGKLDRSALPKPPQQDVAGQAPRTPLEQELAGLFAQALGRELPVAVDVDFFSIGGDSLSAVHLLLAIEQRWRCELGLGALFAQPTVAALAARIAEPPARADHALGPVIALSASDEATAAPLFVLHPAGGIAWNYRALARALQPTRAVYGLQSPALNPTQPLPGSIEAMANDYVQRVITLQPQGPIHLLGWSVGGILAQAMAVRLHDIGREVGELVLLDAYPSECWRAEPEPDPIAALRALLAIAGHDPDAHPELDDRERILAFLRRGGSALGSLPEVVLDGVVRAVTGTNRLIREHQHRPFVGTLAHVRAGRDHQARPQLQSALWKAHALQVDAIELPFLHAELTGRDAVAQLAPWLSARLQQWDRQQESATCS
>CP023271.1|AVJ33513.1|2716757_2717015_-|phosphopantetheine-binding-protein
MNATTEALTLERMRADVARVLDCHAADIGDDDNLIDLDLDSMRMLGLVLAWGNTGLPLEFAQLAEHTTLRQWWTVVQQLQAAQTA
>CP023271.1|AVJ33514.1|2717014_2717647_-|2,3-dihydro-2,3-dihydroxybenzoate-synthetase
MALPRITPYSLPTAAELPQARGAWRPQRDRVALLVHDMQRYFLAAFDAGNAPLQPAVDNIARLLGHCRAHGIPVFYTAQHGDQDRRDRGLQADLWGPGMGRRADHEPIIDALAPQPGEHVLVKHRYSAFQRSNLETLMRVRGRDQLLITGVYAHIGCTATAVEAFQRDIETFIAADAVADFSRADHDQALHWIARTCGVPMTTDQLLEAM
>CP023271.1|AVJ33515.1|2717646_2719299_-|2,3-dihydroxybenzoate-AMP-ligase
MTPSTVDSRLPLQQQWPEALVARYRAAGHWRGETFPGFLRERAERHADDIAVVAGDVRLSYAQLWHEAGRIGAGLLALGLQPGERVLVQLGNTAGFIATVCGLFRAGLVPVYALPAHRSTELAHFARKAEASAYISTDVHEGFDHRGLARALQAEVPAVRHVLIDGDAAEFVALESLQGDRSQLPADPDPQSVAFLQISGGSTGLSKLIPRTHDDYIYSFRASNEICGIDRDSVYLVALPAAHNFPMSSPGFFGALYAGARVVLSPGPGPDVAFPLIAREKVTCCGLVPPLALLWAQAAATSRHDLSSLRVLQVGGAKLVPEAARRVIDGLGCTLQQVFGMAEGLVNYTRLDDPQDLVVACQGRPISEDDEVRVVDDHDQPVAEGEVGHLLTRGPYTIRSYHNDAAANARSFTDDGFYRTGDRVQQLPGGYLVVQGRAGDHINRAGEKISAEEIEDHLLAHPSVFDAAVVSIPDDYLGERSCAFVIQQGEAIKAPALKAWMRGRGLAAFKVPDQIVFVDSFDTTAVGKISRRELRAQLRARHLQQTGGTR
>CP023271.1|AVJ33516.1|2719295_2720489_-|isochorismate-synthase
MNDSLMQGAWPEAASMLPEPTAEASLFLLRQADRQMHARGCRAPLPTGVLATLAERVATFFAQQRGGPGLLVGAVPFEPRADDALYQPERLLPALPVQSQAAPALSGALTAEPSAQAYAAAVADAVSAMRVPDPELHKVVLARSLLAHTQQALSPEMLLARLGTDPSVATYAVPLPVDVGQAPAWLVGATPELLLRKRGAQVLSHPLAGSARRSADPVADERAAQALLASAKDHDEHRHVVDAIVDGLSPWCSHIEAQPRPVLHATASMWHLGTRIHATLKDAATSAATLLAELHPTPAVCGTPRLQALQRIRALEPVPRGFYAGAVGWLDAQGDGDWYVAIRCARLQGTQLRLYAGAGIVADSQPEAEVAETAAKFAALLNALGVQDPLSLIEVSA
>CP023271.1|AVJ33517.1|2720485_2721682_-|MFS-transporter
MHARPVVPGLPALVLAALIGTMAMMSFVAVIGPVVRLLGLSEWHAGLSVTAAGVLWMLAARPWGQLSDRIGRKRVLMLAMSAYTVVYIALAVFIDVALLTIPPVLVSVLVLVGARGLIGLFYAAVPPTAAALIADKAPAGQRAKFLARLGSANALGMVLGPAAAGWLAYKNLPLALYVAALLPLLALGLLAWRLPATPPVAAAHSRNRVPLSRLDPRLRLPQMAAFVAMVSVTIAQVTVGFFAIDRFGLDAAEGARMAGIALTAVGVGLILAQGLVMKLDVHPRRWIILGALIAGIGFASVAAVQQTWQLPAAYALAAFGMGFVFPSFQALAADAVQAHEQGAAAGTVAAAQGLGMVAGPMLGTLLYRGGASLPYLLVGVLLLVLCVLAASYRMKETP
>CP023271.1|AVJ35316.1|2721834_2722146_-|hypothetical-protein
MHPTGRLFAVVAFIEAITWAGLLAGMWLKYGPQANVALVKLFGPLHGVAFLVYVAVTLFAALRLRWPWWATGLAMLAAIPPLVTLPLEWWFKRRGLLSVRAGQ
>CP023271.1|AVJ33518.1|2722252_2723188_-|LLM-class-flavin-dependent-oxidoreductase
MTDFNPAHARLFPKQGLSLGLMTPVAAHGLADLLEARRVARLADDLGFAALWTRDVPLMVPQGPDATASALDDPFLWLGMLAAATERIVIGTAAIVLPLRQPLQVAKSALTLDRISGGRFVLGLGSGDRPEEFAAFGEDLQGRAGTFRERWSLLRAALSPEPSERAPVLQATGGYDVLPAPARRIPMLVVGTARQSLQWIAREAEGWATYHREETAQEGRIGLWQQALAQSGGAPKPFVQSMLLDLQADPTAPAEPLPLGLKVGRDGLRAYLQRVHAQGVAHVMFNLVDNGRPVDDVLGEIGEHVLPDTRR
>CP023271.1|AVJ33519.1|2723242_2723722_+|GNAT-family-N-acetyltransferase
MPRIRPAHVDDLPAISAVCVAAFTAAVAPMLTAEGIATFGNVAAASAFAERLQGDNHILVAEQEGRVVGVVELKAGQHLAMLFVAPELQGQGIGRALLQAVLPQVRGPQMTVRASLNAVPAYEHYGFVLDGDVGEYHGLIYQPLVLAVPAPVAAPPGPH

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Crispr_ID: CP023271_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023271_12

2989147-2989229

Orphan

Consensus_repeat	Method
ATCCACGCATGGCGTGGATCTACTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023271_12

>merge|CP023271|12|2989147-2989229|CRISPRCasFinder
ATCCACGCATGGCGTGGATCTACTGGTCTGGTTGGGGGGGCGAACCCTGGTTCGCCGCATCCACGCATGGCGTGGATCTACTG

>CP023271|12|12|2989147-2989229|CRISPRCasFinder
ATCCACGCATGGCGTGGATCTACTG	GTCTGGTTGGGGGGGCGAACCCTGGTTCGCCGC
ATCCACGCATGGCGTGGATCTACTG

Protein	Signature genes	Signature genes Name	Protein_function
CP023271.1\|AVJ33759.1\|2998166_2998466_+\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ33746.1\|2983875_2984832_-\|EF-P-lysine-aminoacylase-GenX	unknown	unknown	gnl\|CDD\|273090
CP023271.1\|AVJ33752.1\|2993961_2994414_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
CP023271.1\|AVJ33745.1\|2981897_2982962_-\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235578
CP023271.1\|AVJ33748.1\|2985365_2987831_-\|DNA-ligase-(NAD(+))-LigA	unknown	unknown	gnl\|CDD\|236137
CP023271.1\|AVJ33753.1\|2994519_2994750_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
CP023271.1\|AVJ35331.1\|2983009_2983741_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371422
CP023271.1\|AVJ35330.1\|2974241_2974697_-\|DUF4952-domain-containing-protein	unknown	unknown	gnl\|CDD\|374481
CP023271.1\|AVJ33743.1\|2976293_2978819_-\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family	unknown	unknown	gnl\|CDD\|274418
CP023271.1\|AVJ33749.1\|2988017_2989142_+\|aminotransferase	unknown	unknown	gnl\|CDD\|181651
CP023271.1\|AVJ33756.1\|2995990_2996206_+\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ33742.1\|2974774_2976205_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
CP023271.1\|AVJ33754.1\|2994761_2995199_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
CP023271.1\|AVJ33751.1\|2990057_2993561_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
CP023271.1\|AVJ33744.1\|2978949_2981664_-\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
CP023271.1\|AVJ33755.1\|2995400_2995943_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367610
CP023271.1\|AVJ33758.1\|2996738_2998133_+\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
CP023271.1\|AVJ33747.1\|2984828_2985314_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP023271.1\|AVJ33750.1\|2989273_2990011_-\|cell-division-protein-ZipA	unknown	unknown	gnl\|CDD\|235308
CP023271.1\|AVJ33757.1\|2996269_2996608_-\|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl\|CDD\|223393

Protein	Function_ID	Function_description	E-value
CP023271.1\|AVJ33746.1\|2983875_2984832_-\|EF-P-lysine-aminoacylase-GenX	gnl\|CDD\|273090	TIGR00462, genX, EF-P lysine aminoacylase GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. [Unknown function, General].	1.64699e-141
CP023271.1\|AVJ33752.1\|2993961_2994414_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	2.76374e-64
CP023271.1\|AVJ33745.1\|2981897_2982962_-\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|235578	PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed.	0
CP023271.1\|AVJ33748.1\|2985365_2987831_-\|DNA-ligase-(NAD(+))-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
CP023271.1\|AVJ33753.1\|2994519_2994750_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	3.09896e-39
CP023271.1\|AVJ35331.1\|2983009_2983741_-\|hypothetical-protein	gnl\|CDD\|371422	pfam11218, DUF3011, Protein of unknown function (DUF3011). This bacterial family of proteins has no known function. Most members belong to Proteobacteria.	5.73431e-80
CP023271.1\|AVJ35330.1\|2974241_2974697_-\|DUF4952-domain-containing-protein	gnl\|CDD\|374481	pfam16310, DUF4952, Domian of unknown function (DUF4952). This family consists of several uncharacterized proteins around 150 residues in length and is mainly found in various Leptospira, Pseudomonas, Stenotrophomonas and Desulfovibrio species. The function of this family is unknown.	1.30296e-21
CP023271.1\|AVJ33743.1\|2976293_2978819_-\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
CP023271.1\|AVJ33749.1\|2988017_2989142_+\|aminotransferase	gnl\|CDD\|181651	PRK09105, PRK09105, pyridoxal phosphate-dependent aminotransferase.	0
CP023271.1\|AVJ33758.1\|2996738_2998133_+\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
CP023271.1\|AVJ33742.1\|2974774_2976205_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	8.04796e-64
CP023271.1\|AVJ33754.1\|2994761_2995199_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	4.58547e-49
CP023271.1\|AVJ33751.1\|2990057_2993561_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
CP023271.1\|AVJ33744.1\|2978949_2981664_-\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
CP023271.1\|AVJ33755.1\|2995400_2995943_-\|hypothetical-protein	gnl\|CDD\|367610	pfam03691, UPF0167, Uncharacterized protein family (UPF0167). The proteins in this family are about 200 amino acids long and each contain 3 CXXC motifs.	1.35162e-56
CP023271.1\|AVJ33747.1\|2984828_2985314_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.852e-09
CP023271.1\|AVJ33750.1\|2989273_2990011_-\|cell-division-protein-ZipA	gnl\|CDD\|235308	PRK04570, PRK04570, cell division protein ZipA; Provisional.	2.37097e-156
CP023271.1\|AVJ33757.1\|2996269_2996608_-\|iron-sulfur-cluster-assembly-accessory-protein	gnl\|CDD\|223393	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones].	1.33964e-41

>CP023271.1|AVJ33749.1|2988017_2989142_+|aminotransferase
MTLPASRRHFLQLAGAGLALASSGLPRSAQAQPATVAPPPADAGAVLLNFNECPYGPSPAAQQAARDSIASCGRYRFALAGEVRDAFIAQADIPADHVRLYPGSSEPLNRAATLWTGPQAGLVVADPTFETLGEMAAARGAHVQKVPLRSDGAHDLRAMVAAAHARPTGLLYVCNPNNPTGSISPANELAWLMANKPADTRVLLDEAYLQYSEQPSLIAQVAQRDDLIVLRTFSKLYGMAGLRLGVAAAHPERLRELASLGENPLPVPALAAALASLRDPQLIPQRRLQNAKVRQATIAWLGKRGFDCLPTEANCFVVDVQRDGAAFAKAMADNGVVIGRSWPIWPQRVRVTVGTEEEMARFCSAFAKVAGVPA
>CP023271.1|AVJ33748.1|2985365_2987831_-|DNA-ligase-(NAD(+))-LigA
MSPSPAERAEDLRRQIAQANRAYHELDAPEIPDVDYDRLVRELEALEREHPDLARADSPTQQVGARPSGRFAEVTHAVPMLSLSNAFSDEEVADFVRRIDERLRRGTLRFSAEPKMDGLAISLRYEDGHFVLGATRGDGSTGEDVTANLREIGDIPKRLKGRDWPDVLEVRGEVYMARADFEAYNERARLHGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFTYGTGEVQGGELPDTHSGTLAQLRDWGFPVSDLCKVVEGSDGLLAYYRDIGERRDGLAFDIDGVVYKLDDRAGQQAMGFVSRAPRWAIAHKFPAQEQSTTLEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHNADQIARLDVRVGDSVIVRRAGDVIPEVVSVILDRRPAGTTPWQMPTSCPVCGSEIVREEGAAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVRSVADLYRLTRDQLLHLKLVLDAEDPSALAASLKLHLPAEGSGAVLNAVLKLDGNDAGWRAQALAQPAAFEWNTKKIATKWADNLIAAIDASRDATLERLLFALGIEHVGESTAKALAQWFGDLALIRRLPWPLFKRVPDIGGEVARSLGHFFEQEGNQQAIDALLQVGQVRISDVHPPSAKLREGLDLAQLLVEAEIPGITRLRAEKLVAVLPSAQAVLDAEHGQFVNAGLPDDTARGVADWLDSEGHGAMLLAAEVEMKHILASAPALAEVVAGPLDGQTVVLTGTLAQLNRDTAKERLEALGAKVSGSVSKKTSFVVAGTEAGSKLDKAQSLGVPVWDEERLLAYLAEHE
>CP023271.1|AVJ33747.1|2984828_2985314_-|N-acetyltransferase
MQTAPLDFRLATRADEELLIALMRDFYAEDKIEFDDARVRRGVDALLADPRNGEVLLWLDEAAAVVGYAVIAMGFSLEQGGHFMLLDELYLSHRARGRGRGKRALAICEQRARGRGVSRLRLEVNHHNELARRLYLASGYIDDTRDLLTLPLDHPRPEGIL
>CP023271.1|AVJ33746.1|2983875_2984832_-|EF-P-lysine-aminoacylase-GenX
MSEALLRSLQQRASLNALVRRFFAERGVLEVETPILSVAGNTEPNIDSFHTDFSGHVDAGGRRRWLRTSPEFPLKRLLAAGVGDCYELGRVFRNGEAGGRHNPEFTMLEWYRVGWDHHRLLQETAELVGQALALVGRNATLRVLSYRELFQQQAGVDPFDADEGQLRAALGEVHIDPVGLTRDDWLDLLMTHRIQPHFDDTVMTVVHDWPASQAALARIRPGTPPLAERFELYLGAVELANGYNELNDAAEQRARFQHDLQRRHARGQVQPALDEALLHALPAMPACAGVAVGIDRLLMAMHRTPRIADVLAFDFAHA
>CP023271.1|AVJ35331.1|2983009_2983741_-|hypothetical-protein
MVKWFAVVAAPMYSVAIWGGLLPSTASAQSLGYDSEVVTCESRDMGWVHCDIDVSNGVDLIRQLSNNSCIRGSEWGTDRSGVWVTLGCRAEFRARGAETDAVPAAEGRKRLVRRVVRCESNGRPQSCPVRLDGAPVRLLRQLSVLPCREGQGWGYKRNEVWTTRGCQGDFEVADEQGRFVDMPRRLTCESKSKKRRFCGASISTSATLSNQLSSTPCEEGSTWGWNRNGIWVDGGCRAEFSVN
>CP023271.1|AVJ33745.1|2981897_2982962_-|S-methyl-5-thioribose-1-phosphate-isomerase
MNTATDLDYARYDHIRPILWTGDALQLLDQRKLPFVVEHVACHDSDEVAAAIHALTVRGAPAIGIAAAWGVVLAARDVQAADGAHALQQLEPALQRLNASRPTAVNLAWALARMRRCLSAAGADWKALLEAEAQAIAEEDLAANRHMGALGAGLIEAGSGVLTHCNTGSLATAGFGTALGVIRAGMAQDRIARVFAGETRPWLQGARLTVWELQQDGIDATLIADSAASHLMKTGAVQWVIVGADRICANGDTANKIGTYQLAIAARHHGVKFMVVAPSSTVDMDTVDGSQIEIEQRDPGELYGVGGTRTVAEGIAAWNPVFDVTPGELIDAIVTERGVILNPTAENMRTAFGG
>CP023271.1|AVJ33744.1|2978949_2981664_-|DNA-gyrase-subunit-A
MAETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKPYFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPHNLTESINACIALIDNPEIDIDGLMEFIPGPDFPTAGIINGTAGIIAGYRTGRGRVRIRAKADVEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVTRRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPTEARERMLARLWEPGLVGSMLGAAGAEASRPDDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTEEYKQLLEVIAGLIHILEDPDRLLQVIREELINVRAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTLSHAGYVKRQPVSAYRAQRRGGRGRSAASTKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYADGQFVFFATKNGTVKKTPLGEFAFRLARGKIAINLDEGDALVGVGLTDGERDILLFASNGKTVRFGEDKVRSMGRTATGVRGIRMPAGEEVVSLIVAESAGGIEDENEDDNGVEEAVANGDALIEGADDANLRYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERNGKLVAAVLMGTDDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDASIDEDEDEVAAAAPAATDGAPAAASSEDAAQE
>CP023271.1|AVJ33743.1|2976293_2978819_-|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family
MSATPQSASAPPPRHPLVTVLALLLIVLGLVIGGLGAWLLSLGGSWYYAIAGLGLLVCGILLWGNRRSGALLYALVFIGSLLWTWWESGSDYWRWVPRLGLVTALGIVLALLAPTLQAPVPRRLSRSVAAVLMLVFVAAFGLAFTPHGVVDGHQPFPEPAVSAGLDPTRDTTGLQPADQPAEGDWPAWGRSNAATRYSPLQQVTPENVGTLQLAWQFRTGDLPKKRWGAETTPLKIGDRLYLCTARNQLIALDAGSGKELWRFDPKVKDASIPYTAACRGVSYYELPSAPTLADAALADVAADLALPAPPPTRTHQSAAPGSRSACSARIIEGTLDGRLIAVDADSGRPCANFGNNGQVDITLGMGEVPPGYVSITSPPAIVRGVIVTGHQVLDGQRRDAPSGVIQAYDAISGKLRWAWDMDQPERSGLPPREQTYTRGTPNMWTTATGDEALGLVYLPMGNSAGDYWSGSRTENQNRYATSLVAIDVATGKPVWHFQAVRNDVWDYDLGSQASLIDYPTASGKVPAILLPTKQGDMYILDRRNGQLLTPAEERKVPQGGVEPEQRAATQLFSLYHTLRRDDALTERDMWGITPIDQLVCRIQFRKAHYEGFYTPPSSDHHSIEYPGYNGGSDWGSVAIDTRRGVIVANYNDMPNYNRLVPRAEADRKGWLPREQMRADKGGAEGAGDPQVGTPYGIDVNAGWRLPFTGLLCKQPPYGGIRAIDLRSGKLLWDRPFGSARGNGPFGIRSGLPIEIGTPNNGGSVVTASGLIFIAAATDDLLRAIDLKTGKELWHTKLPAGGQASPMVYEQGGRQYVVIMAGGHHFMETPAGDYVMAYALPE
>CP023271.1|AVJ33742.1|2974774_2976205_-|serine-hydrolase
MSVYRQRFCALLLAFALLPALSSSVGVAEVPAGSSGPRAQDAVDEWLAAFNAGSLDGLQAFADRYAKKAGSGPQDYLEFRASSGPMKVLDVRSSTPEKVEVLVLGESSERAMLLTAEMDPAAPRHVKLFQLEGVPTPQQFQPARMELPALLGEITARLNALQAADALSGAVLVAHDGKVLMQWQGGLANREQRVPVDAQTQFRLASSNKMFTAVAILQLAEAGRLTLDDTIGKRLADYPNEGVAGTVTIRQLLNHTSGLGDFFGDDFEHYAASLRTHDDYVQRFAKDPPQFAAGSQDGYSNYGFIVLGRIIEAVSGQTYYHYVNDHILRAAGMTATGFEPELVDVPHRAPGYTRAKGQWLSETRSLLWRGTAAGGGYSTVGDMLKFAEALRAGTLVSPAWLQQATRPQNNKGWYGYGFMVQGEGRQRQFGHEGGAPGSNSAIVVMPEQGYVLIGLANVDPDAMGNVINYIARRVPL
>CP023271.1|AVJ35330.1|2974241_2974697_-|DUF4952-domain-containing-protein
MAFLLAGTAQAQRPDAALAEWELHGRSEGLARPDTVCQDFLQAMGRKPAELEYVGCTQDDDSYIQPMEARYRVSGASAAKIEAYLQQTFGMPSLTYVCCGWSSGAPYFWHEQPGSVKYQIGMGVESLHHPRTQWSAIPYFTVTVAVNRKGP
>CP023271.1|AVJ33750.1|2989273_2990011_-|cell-division-protein-ZipA
MSDTALLRIGILAAGLLLVAAIFLFGRPKKKPQGRRLDSAEPISGERREPVLGEDGVPVAGDRVEPGMGETVEQAELGLPDVDGAASDLGKRATQDFDKIVSLFVAARAGEQLRGEDIVVAAEKTGLVFGHMNVFHRLVEGHPERGPIFSMASIMKPGSFDMGNIRAMETPAIAFFLTLPAPLTALDAWEKMLPTVQRMAELLDGVVLDDSRNALGRQRIAHIRDELRAYDRQHQAPPLTKTPRW
>CP023271.1|AVJ33751.1|2990057_2993561_-|chromosome-segregation-protein-SMC
MRLSTIKLSGFKSFVDPTTLHLPTNMTGVVGPNGCGKSNIIDAVRWVMGESSASRLRGDSLTDVIFSGSNARKPVSQATVELIFDNSDHTISGEYASFNEISVKRTVSRDGSSNYYLNGTKCRRRDITDLFLGTGLGPRSYSIIEQGMISQIIEARPEDLRVYLEEAAGISKYKERRKETETRIRHTRENLDRLGDLREEITKQLEHLKRQAKQAEQYQALQEERRVKDAEWKALEYRGLDGRLSKLREGLSQEETKLQQLIADQRDAEARIETSRVRREEAADALNAAQAEVYQVGSTLARLEQQIQHQRELSQRLHKARDETRQALAELGQHISGDEAKLMVLREAVDAATPQLEALQEENEIKQEGLREAEARLSDWQQRWEQHTSQSSEASRAGEVERTRVDYLDKQILDADRRREALAAERAGLDVDALDEVFEQLHLQHDTQKTALDELTEQVEERKHGVAAVQEQQRNGQNELAELRKQVNGLRGRLSSLETLQQAALGQEQGAAVAWLKSRGLDSAARVGERLDVDAGWENAVESALGQLIEGVLVDDPASLVDALGELGEGRIALVANDGADLKVAPTSLAARVRGPAPIRRLLARLHGARDLAEANALQASLPEGDSIITQGGERLGEGWVRVSRSGAAKQGALLREREINELREQIEQLQSREAELEEQLAGFREHLLAAEQQREDAQRALYLAHRAVSELAGQLQGQQGKVEAARTRIDRIEGELSQLLETLDINREQAREARARLENAVNSMGDLESNRQGLEGERRQLTEARDLARDAARAVRERSHALALTLESQRAQVASLSQALERMSTQRGQLDARLGELHSQLDEGDTPVESLQAEHQNALEERVRADRVLTEARTLLDGIDAELRNYEQTRHQRDEQALSQRERISQRKLDQQALVLSAETLQGAVEKAGFVLQDVINALPEEARLGDWEQAVHQIDGRMRRLEPVNLAAIHEYGEASQRSEYLDAQHVDLTTALETLEDAIRKIDRETRGRFKDTFDRVNAGVQALYPRLFGGGHAYLELTGEDLLDTGVTIMARPPGKRVSSISLLSGGEKAMTAVALVFAIFQLNPAPFCLLDEVDAPLDEANVGRLANMVKEMSEKVQFLFVSHNKATMEAAHQLSGVTMREPGVSRLVSVDLEEAARLAGAA
>CP023271.1|AVJ33752.1|2993961_2994414_-|50S-ribosomal-protein-L9
MQLILLQKVTNLGNLGDLVDVKPGYGRNFLVPQGKAVPATESNKAEFEAKRADYEAKAQSIHAEAEARKAKLEGASVTVAANASTEGKLYGSVGAREIADAFTAAGLALSKSEVILGEGAFRNIGEYEVLVHLHADVETTVKVVVEAEKA
>CP023271.1|AVJ33753.1|2994519_2994750_-|30S-ribosomal-protein-S18
MSKFFRRRKFCKFTAEGVKEIDYKDLNTLRQYLTENGKIVPSRVTGTKSKYQRQLATAVKRARFLALIPYTDNHDV
>CP023271.1|AVJ33754.1|2994761_2995199_-|30S-ribosomal-protein-S6
MSRHYEIVFMVHPDQSEQVPAMIERYKSLVENGNGTIHRLEDWGRRQLAYPIQNLVKAHYVLLNIEVDQAVLTELTESFRFNDAVLRNLVIKRDEADTEQSLIMKSKDEKGDKPERGERRRRDDEEGETTPAADNDAGDDAASAA
>CP023271.1|AVJ33755.1|2995400_2995943_-|hypothetical-protein
MERPVFPYSPNAYALSFEEVDGICDCCGQSRTLRYRGPFYTPLRPDYLCPWCIADGRAAASYEGEFTGWSDIEGVSPDPADPPPTIPRGQLLEICERTPGYSSWQQSVWLSHCERPCAFLGFAGSEDLLPILDQVRPDVAEVNPRDADWLLEHLSRDGEMVGCLFQCLQCGQHRLHVDLG
>CP023271.1|AVJ33756.1|2995990_2996206_+|hypothetical-protein
MRHWINRDDGRLFRVGNGPISGATALGSLSLVAALLMHLLRDATGLPGSFAAACLTIAGALLARDACRNRH
>CP023271.1|AVJ33757.1|2996269_2996608_-|iron-sulfur-cluster-assembly-accessory-protein
MAVSLTPIAFERVQRFVAQTPGALGLRFGVTKTGCSGWGHITDLARDERADDTVFDQDGVKIYVDAKSLALVDGTVIDFGKHGLSETFTFSNPNATAECGCGESFTTDADKA
>CP023271.1|AVJ33758.1|2996738_2998133_+|asparagine--tRNA-ligase
MTVVSVEHALAGKIPEGGEVTVRGWVRTVRGSANLAFVNVTDGSCFAPIQVVAGDALANFDEIKRLTTGCSLVATGTLVKSQGKGQSFEIQASAVEVVGWVEDPLTYPIQPKPMTPEFLREVAHLRPRTNLFGAVTRIRNCLAQAVHRFFHENGFNWISTPIITTSDAEGAGQMFRVSTLDMVNLPRDAQGGIDFSRDFFGKETFLTVSGQLNVEAYCLALSKVYTFGPTFRAENSHTTRHLAEFWMIEPEIAFADLAEDARLAEEFLKYLFRAVLNERGDDLAFIAERVDKNAITKLEDFINAPFERIDYTDAVSLLQKSGKKFDFPVEWGLDLQTEHERWLTEEHVGRPVVVTNYPEHIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAQFGLDREHYSWYRDFRRYGSVPHAGFGLGFERLVVYVCGLSNIRDAIPYPRAPGSADF
>CP023271.1|AVJ33759.1|2998166_2998466_+|hypothetical-protein
MTLFFALCFVGVAVAGFSAFVIFWPLTLVHVRDRHPALAQRFGSGAFLKPDALGWLLRREYRTQPDRSLSGLATPAWVSLLTLLAGLGMAALLWLASLW

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Crispr_ID: CP023271_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023271_13

3320858-3320953

Orphan

Consensus_repeat	Method
CACCGTGATGCGTGCATCCCCTGCCCATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023271_13

>merge|CP023271|13|3320858-3320953|CRISPRCasFinder
CACCGTGATGCGTGCATCCCCTGCCCATGCCACCCCCCGGTAGCGCCGGGCCATGCCCGGCGGAACCACCGTGATGCGTGCATCCCGTGCCCATGC

>CP023271|13|13|3320858-3320953|CRISPRCasFinder
CACCGTGATGCGTGCATCCCCTGCCCATGC	CACCCCCCGGTAGCGCCGGGCCATGCCCGGCGGAAC
CACCGTGATGCGTGCATCCCGTGCCCATGC

Protein	Signature genes	Signature genes Name	Protein_function
CP023271.1\|AVJ34038.1\|3329534_3330893_-\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|235701
CP023271.1\|AVJ34026.1\|3303690_3306498_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP023271.1\|AVJ34032.1\|3321003_3323010_+\|peptidase-M13	unknown	unknown	gnl\|CDD\|341056
CP023271.1\|AVJ34037.1\|3328130_3329051_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|223769
CP023271.1\|AVJ34036.1\|3327027_3327702_-\|DUF1751-domain-containing-protein	unknown	unknown	gnl\|CDD\|223777
CP023271.1\|AVJ34025.1\|3300534_3303330_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP023271.1\|AVJ34040.1\|3332407_3332890_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
CP023271.1\|AVJ34039.1\|3331064_3332309_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225193
CP023271.1\|AVJ34033.1\|3323072_3324728_-\|saccharopine-dehydrogenase	unknown	unknown	gnl\|CDD\|379359
CP023271.1\|AVJ34027.1\|3306887_3309692_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP023271.1\|AVJ34031.1\|3318616_3320722_+\|peptidase	unknown	unknown	gnl\|CDD\|226118
CP023271.1\|AVJ35343.1\|3327795_3328104_-\|cysteine-methyltransferase	unknown	unknown	gnl\|CDD\|226219
CP023271.1\|AVJ34023.1\|3298820_3299387_-\|dCTP-deaminase	unknown	unknown	gnl\|CDD\|234753
CP023271.1\|AVJ34024.1\|3299464_3300319_-\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|378455
CP023271.1\|AVJ34035.1\|3325332_3326919_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224154
CP023271.1\|AVJ34028.1\|3309883_3311905_+\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
CP023271.1\|AVJ34029.1\|3312087_3314973_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|224544
CP023271.1\|AVJ34022.1\|3298553_3298721_+\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ34030.1\|3315436_3318427_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP023271.1\|AVJ34034.1\|3324853_3325336_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226383

Protein	Function_ID	Function_description	E-value
CP023271.1\|AVJ34038.1\|3329534_3330893_-\|glutathione-disulfide-reductase	gnl\|CDD\|235701	PRK06116, PRK06116, glutathione reductase; Validated.	0
CP023271.1\|AVJ34026.1\|3303690_3306498_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	8.79798e-21
CP023271.1\|AVJ34032.1\|3321003_3323010_+\|peptidase-M13	gnl\|CDD\|341056	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I. The M13 family of metallopeptidases includes neprilysin (neutral endopeptidase, NEP, enkephalinase, CD10, CALLA, EC 3.4.24.11), endothelin-converting enzyme I (ECE-1, EC 3.4.24.71), erythrocyte surface antigen KELL (ECE-3), phosphate-regulating gene on the X chromosome (PHEX), soluble secreted endopeptidase (SEP), and damage-induced neuronal endopeptidase (DINE)/X-converting enzyme (XCE). Proteins in this family fulfill a broad range of physiological roles due to the greater variation in the active site's S2' subsite allowing substrate specificity. NEP is expressed in a variety of tissues including kidney and brain, and is involved in many physiological and pathological processes, including blood pressure and inflammatory response. It degrades a wide array of substrates such as substance P, enkephalins, cholecystokinin, neurotensin and somatostatin. It is an important enzyme in the regulation of amyloid-beta (Abeta) protein that forms amyloid plaques that are associated with Alzeimers disease (AD). ECE-1 catalyzes the final rate-limiting step in the biosynthesis of endothelins via post-translational conversion of the biologically inactive big endothelins. Like NEP, it also hydrolyzes bradykinin, substance P, neurotensin, and Abeta. Endothelin-1 overproduction has been implicated in various diseases including stroke, asthma, hypertension, and cardiac and renal failure. Kell is a homolog of NEP and constitutes a major antigen on human erythrocytes; it preferentially cleaves big endothelin-3 to produce bioactive endothelin-3, but is also known to cleave substance P and neurokinin A. PHEX forms a complex interaction with fibroblast growth factor 23 (FGF23) and matrix extracellular phosphoglycoprotein, causing bone mineralization. A loss-of-function mutation in PHEX disrupts this interaction leading to hypophosphatemic rickets; X-linked hypophosphatemic (XLH) rickets is the most common form of metabolic rickets. ECEL1 is a brain metalloprotease which plays a critical role in the nervous regulation of the respiratory system, while DINE is abundantly expressed in the hypothalamus and its expression responds to nerve injury. A majority of these M13 proteases are prime therapeutic targets for selective inhibition.	8.63389e-172
CP023271.1\|AVJ34037.1\|3328130_3329051_-\|EamA-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.12976e-09
CP023271.1\|AVJ34036.1\|3327027_3327702_-\|DUF1751-domain-containing-protein	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	8.97543e-38
CP023271.1\|AVJ34025.1\|3300534_3303330_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.50928e-23
CP023271.1\|AVJ34040.1\|3332407_3332890_-\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	1.46289e-54
CP023271.1\|AVJ34039.1\|3331064_3332309_-\|hypothetical-protein	gnl\|CDD\|225193	COG2311, COG2311, Predicted membrane protein [Function unknown].	3.36357e-88
CP023271.1\|AVJ34033.1\|3323072_3324728_-\|saccharopine-dehydrogenase	gnl\|CDD\|379359	pfam13761, DUF4166, Domain of unknown function (DUF4166). This domain is often found at the C-terminus of proteins containing pfam03435.	5.57792e-33
CP023271.1\|AVJ34027.1\|3306887_3309692_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.18937e-22
CP023271.1\|AVJ35343.1\|3327795_3328104_-\|cysteine-methyltransferase	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	2.04249e-22
CP023271.1\|AVJ34023.1\|3298820_3299387_-\|dCTP-deaminase	gnl\|CDD\|234753	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.	4.49438e-111
CP023271.1\|AVJ34024.1\|3299464_3300319_-\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	4.60028e-143
CP023271.1\|AVJ34035.1\|3325332_3326919_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	2.02093e-103
CP023271.1\|AVJ34028.1\|3309883_3311905_+\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	3.62733e-42
CP023271.1\|AVJ34029.1\|3312087_3314973_+\|TonB-dependent-receptor	gnl\|CDD\|224544	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism].	4.27287e-21
CP023271.1\|AVJ34031.1\|3318616_3320722_+\|peptidase	gnl\|CDD\|226118	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones].	0
CP023271.1\|AVJ34030.1\|3315436_3318427_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.39752e-25
CP023271.1\|AVJ34034.1\|3324853_3325336_+\|hypothetical-protein	gnl\|CDD\|226383	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown].	4.57824e-74

>CP023271.1|AVJ34031.1|3318616_3320722_+|peptidase
MTRTPKIVLLTLAVSAALVGCGKNETPAKDATASTPAAADAATTYKLDESKLPAYNAFQASDLDSNLDACTAFGDYVNGKWLAANEIPGDRTSWGAFTILDERSVAVQHQLAEQVAQVKNPAGIEKIVGDLWATGMDEAKVNAQGIEPLKADLAAIDGLQDKAAIANYLRTSAAKGENVLFGFGAEADFKNSAVNMAYASQGGLGLPDKTFYTDASKADKLKAYQAHVAKVLELSGVAAADAAKQAEEVVKFETRLAKASKSSVELSRDVSLYYHPVSLAEADALTPNFSWTEFFKSQNVAAPEKFSLAIPAFHQEVSKALGDTDPSVWRAYLRFHTVDGASPYLADAFVQENYEFYGKTLNGQKEQKPRWKRVLGTIESDAGEAFGQLYVKVAFSPEAKAKMEELVKNLAASLKERIQGLSWMSEETKAKAIAKWETFTPKIGYPDKWRDWSGLQTNRDSYLGNVRAATAFNYQYNLAKIGKPVDKTEWGMTPQTVNAYYNPLQNEIVFPAAILQPPFFDAKADDALNYGGIGAVIGHEMTHGYDDQGSRFGPTGNFENWWSEADSKNFAGLTGKLVKQFDQYKVDGQAVNGHLTLGENIADLGGLATAYDALQKASAGKEDAKIDGFTRDQRFFFNWATVWRTKYTPENAKVRLATDPHAPAQFRAVGAPSNLPTFTAAFQCKPGTPMSRTGDSQVVIW
>CP023271.1|AVJ34030.1|3315436_3318427_+|TonB-dependent-receptor
MTHHRTPGRHPLTNALLAGLMMAAAAPALAQEASSGNNPIDLDRVSVTGSRIARTGFVTPSPVTAITAEEIRATGANNIGDLMARMPALSPTYTLGNSTRFIGTAGVGLMDLRGMGTSRTLVLVNGRRHVGATSGSSAVDVNTIPVEWIERVEVITGGASAVYGADAVAGVVNFIMKKSFDGAEVRGQTGMASEGGFNRSFISASAGTDFANGRGNAAIALEYSKQDRFVRSDRAIGNEFLVSVPNPNYDPTKPSSESNPQTVLSGPGGNHSISFGGTFTLGAFSPTNKATWGNRYQFNPDGTYRPQRYDGVMPSTTSCVNCDFADLNSVADLQPGFDRKSVNAVVNFDLTDNHRLYFEGKYTETVSDFLAQPSFDQTLRIQRDNAYVSPQLRALMAANGASQLTLSRFNVDAGQRGEHVERNTQRFVLGVEGNLTENWTYDVYGNWGQSEVKRWNLNNRINERWQAGLDTVVDPSTGQIVCRTTLNPNATNPNNGNRVYSQFAREGCVPFSVFGNGAVTQAARDWMNVDSFNYSRLQQSVFSASLANASLFSLPAGDVGVAGGVEYRREKSREITDPLAAQGLTFLNAIPNRMGKYDVREAFVEATVPLLADIPGIYNLTMDAAGRWSDYSSIGKTTTWKVGLDWTIIPSLRARGTLSQAVRAPSIGELYNPQSENFATVNDPCNYLATNSNRPNTAADPALRQANCSALGVPVGWVDTYTATRPGVSGGNPNLKPERARSFTYGLVWQPDFLQGFGMSVDYWWISLKDAIGAVTAQTNATRCVDSPGGINNSFCGFIERAPVGGKTDAGGRTFPEHSISRWVALNENLARSRRVGVDLEMDYRFKIAEGDTVIRLVGTRLLQSREWAFQDFPNEYDENVTWVTDPRWRGSLQTKYSLGQWRASWDLNYVSSNLRVQPKSYQANPGQSSPIRNGSYVYHNFQFGYRFPGDKIDVYLGVDNAFDKDPPVNYFGSDVGSAMYDNIGRYMYMGATYKF
>CP023271.1|AVJ34029.1|3312087_3314973_+|TonB-dependent-receptor
MRNVIRLSKPSRVPLTLAVLACLHVAPAFAQETPQQEAASSSTTPASKRATELDTVVVTGSLIKRPEYETTSPVQVISIDKAISAGQFDTADFLQTSSIAAGSTQMNNQFGGFVVEGGTGVQTVSLRGLGANRTLILLDGQRPGPAGTRGQVAAFDLNVIPQAILQRLEIVKDGSSSIYGSDALAGVVNLITKKSIDRPEMTYSMSVPQHGGGEQFSASIANGWNFDKGSVVAAAQWDRLNALTVGDRDYFRCAEDMVWGTDGKRIDREDRSILAGSNLAGCSTGNLYANTIINYNNPAIRYVPSPDGSTVGPFPGYRPRPRPTPTYANGGTAYYQDVLNFPFYHDQEVINQRERASLYAATDFSFDSFNWKTQFLYNRRETKAHSWRQFYPTVYSEAADDYFQVIMPFPSDQKITVDYFYGTTKFDGQFKSTDSWTWEVNAGFSRSTGKYGALSIDVDRAGDLVYTDDDMPVNYFDPGFLNGTRMNELIAAVGQYHTGKTTYDQTSANAIFSGNLFTLPAGDVASAFGVEFRRYKIDDTPSDFALADRSWNSTSAGPTRGTDKVKEAFAEVDVPLLKGIPGIESLSVNLSGRVFEYDSVPGSDHVWKTGVNWQIIPSLRVRGTMGTSFRAPGLYELYLGDQTGFLPQTQIDPCIQWGDSNNTFIRANCGAAGIPDTYTGGGGSSATIYSGGGGKNNLQPETSKAKTLGLVWSPTFANLNVALDYFDYDVRGEITQLDEYDIVFGCYGSAVFPNAFCDQIVRNSPTNASAPNNITTIYNKYVNINRERTRGYDLQVNYDNDFSFGKISAEAQVTYTIEDTYQLFDSASDSGITTSDQVGYIGRPKTVGLASVSLERGDWTFNWQGTYVSSTQNKDLDRNFTYSGYQNATRDIKAGWQFRHSVSVGYDMDDWNIMVGVRNLFDKEPDLISNTAGTRYGNTPLYASQYDWYGRTFFARVSYKF
>CP023271.1|AVJ34028.1|3309883_3311905_+|S9-family-peptidase
MHVISARTLCGALSMALAGATAHAAPIPIEDLARMPALQSVSMSPDGKHLVALIPSPGNPEETALASWDTDAMGGAPKVVTPSGDRMKFIAVGALKSDQILAVGRQEWTGQLGGCGEGSVSGATKTFVVKTYLTDQSQKTFNEAFADNTRKLGVSEQTQRCLELGGSASLVNMLPLDPDRVIIRQLSEITLTANYYLYNLKTKETELLFRGGTRAQPALFDPRSGKVLAKSQIEPVSGDYDQQIQILDPSSGQFVLQKPLLTRLSNRHTVELAGVDDATGKYYVLTDLFSDKVQAHLYDAKAQKFDPEPVLANPNFSIASLVFSTQPSTFNQVVGFTIDGPSQQTVYVDPTLKSIQDTLKQAAPGRQIEISRYNDDFSRILFRATGPDAPPSHFLLLDRKKVVSLGSERPWISKGTVGEQRWVNYKARDGRVIPAILDLPAGWKEGDAAAPAIVHPHGGPWARDYVQWDASGWVALLTSRGYAVLRPQYRGSSGLGRDLWIAGDREWGQKMSDDNDDGAAWLVSQGFAAKDRIAIFGYSYGGFAAAAATVRPGSPYQCAIAGAPVTDLARLGTSWSDNRLQRILQGQTVKGMDPMRNTASANIPVMLFVGDRDVRTPSFHAQGFYEAVKDKVPAQYHLIADQQHSMPWYPRQQRETLGLIEGFLKKDCGPGGL
>CP023271.1|AVJ34027.1|3306887_3309692_+|TonB-dependent-receptor
MSRHRSTPSRHPLTLALIGTLLASGAAHAQDTGPTQLDRVTVTGSLIPQTQIENHTPVLTVTAEDIQTRGFTSVADVLQQSSLSTGGLQGGQTSASFTQGAEAAGMFGLSPGYTKYLINGRPMLSYPALYNGSDSFNNISGIPIDIVERIEILPGGQSSLYGSDAIAGVVNIILKERMDGGVLNVRGGAYSEGGGNSVRVSAARGFNGVDDRFHALVNVQYEKTSPIWGYQRDLTKVNNPDGYSPQYVSNDFLVLLPANSNRYAMMDPNLCANVAGQFDGTTVLGTRPTGQACGSVYGTGYKTIKNGKESGQIYSSMTFDVNDNFQLFGDALYSLEEVKYATGSNYTWWGTSSGWGRFYDQDSGQYMNLQRVFAPEDIGAGGYRDIMNTDRNKAYQVTLGGRGTAGSWDYSASFTRGEYKLTERNFVRWNDPINDYFEQRVLGPVLGTTSTGYNIYSPDWEAFYSPLPSGDFQSFTGYTYSQSRTWQNLLRAQVTNGSLFKLPGGDAGFAVVVEGGSEGWDYTPDTRLVDGSVWGTTAVSGAGHRSSYAVTSELRMPLLESLTVTGSGRYDAFKIGGNTIDKATYSVGLEFRPIDSLLFRGKYGTAFRAPTLSDAFQGVSGYYANGSTDYYRCGQLGYDPANTTGCPYDSVSVFGTQSGNPDLEPITADVWNAGIVWAPINNLSVSVDYYNWKIKNEVNTLSSDQLLLAEYYCRNGQTNNTSASCQNVSDWITRDASGVLDEIYTPKMNVASQNLQALTASFKYVQDIGRFGSLQFSGNYTDMLKRELQPQPGDEYLDLLRDPYAMWVYDSYAKVRADGSIGWAKDKWTTTLYANYIGKTPNYMAYLGNGYDYVHSSGYKAGKWGSYTTYNLSVNYRAMDNLTLSLMVNNVFNKMPDNQRYSFAGTSGQPYNNYLYNAYGRAIYVQAKYEFGNN
>CP023271.1|AVJ34026.1|3303690_3306498_+|TonB-dependent-receptor
MSRNGFPRHPLTRAVLSGLILASSSAIALAQDNTPTDLGRVTVTGSLIPQTQIENHTPVLTVTAEDIQTRGFTSVAEVLQQNSLTTGGLQGGQTSASFTQGAEASGMFGLSPSYTKYLINGRPMLSYPALYNGSDTFNNLSGIPIDIVERIEILPGGQSSLYGSDAIAGVVNIILKDRMDGGVLNVRGGAYTEGGGNDFRVSGAHGFNAFDDRFHALVNVQYEKSSPIWGYQRDLTKQNNTRGYTPQVPTNDFLVYLPDQQNAYVMMDPSRCANVAGQFGGTTVLGTRATGESCGSPFSAGYKTLKNGKESSQIYSSMSFDVNDNFQLFADALYSLEEVQYNSGSGYAFWGSDVGFGAFVDQASGEYMNLQRAFAPEDISPAGYRDTMSTDRNKAYQITLGGRGNVGNWDYSASFSRGEYKLTERSFARWANEIDSYFEDRVLGPVLGVTDDGYNIYNPNWGAFYSPLPAGDFQTFTGFTYNKSRTWQNLGRAQITNGSLFKLPGGDAGLAVVAEAGSEGWSYTPDQRLLDGSVWGTTSVAGAGHRSNYALTSELRMPLLESLTVTASGRYDAFKIADKTVDKSTYSIGVEFRPIESLLFRGKYGTAFRAPSLSDAFQGRSGYYANSSVDYYRCGQLGFNPSDTVGCPYANESVFGEQSGNPELEAITADVWNAGIVWAPINNLSLSVDYYNWKIKNEVNTLSSDQLLLAEYYCRNGQTNNTSASCQNVSDWITRDGAGKLDQIYTPKMNIASQNLQAVTASFKYVQDIGRFGALQFSSNYTNMIKRELQPQPGDEYLDLLRDPYAMWNYDQYAKVRADGAVGWAKDKWTTTVYFNYIGKTPNRMAYLGKGYDYVHPSGYEAGKWGSYTTYNLSVNYQAMDNLTLSMMVNNVFNKMPDGQAHSYAGNIGAPYNSSIYNPYGRAVYVQAKYEFGGK
>CP023271.1|AVJ34025.1|3300534_3303330_+|TonB-dependent-receptor
MKDLRNSARRDTLAVALISALVAASPAMAQDKATNLDKITVTGSLIPQTQVETQTPVMTISAEAIQSRGFNSVAEVLQQSSLTTGGIQGGQTSASFTQGAEAAGMFGLNPGYTKYLINGRPMMSYPALYNGGDAFNNISGIPIDIVERIEVLPGGQSSLYGSDAIAGVVNIILKDHMEGGSLSVRGGTSTEGGGSSFRVSGAHGFSALDDRFNALVNVQIESSNPIWGYQRDLTKQNNANGYTAQLPSNDFAVIDAKTNALYMMDPSNCANVAGQFDGTTVLANRPTGQSCGSVFGAGYKTLKNGKDSGQFYSSMTFDVNDNFQLFADVLYSKEKTEYTSGSNYLWWGTKSTMGGFYDQASGKLVNLQRAFAPEDIGGEGYKGILNNDKSRAYQVTLGGKGAVGNWDYSLSFTRGEYRLDESKFQRFGNAINSYFADKVLGPQLGTQDGFGIYNTNWGAFYSPISPEDFAGFTGYTTNHSRTWQNLARAQVTNGSLFSLPGGDAGLAVVVEGGSEGWDYSPDQRLLDGDVWGSSAVAGNGHRSNYAVTSELRMPLLESLTVTASGRYDAFKIADNTVDKATYSVGVEFRPIESLLFRGKYGTAFRAPTLPDAFQGRSGYYAANSTDYYRCGELGYVPGNTDACRYADSVSVYSERAGNPDLEPITADVWNAGIVWAPMANLSISADYYNWKIENEVDTASTDQLLLAEYYCRNGLPNGSSATCQNVADWVVRDSAGNLSSLYTPKMNVARQNLQAVTVGFKYLQDIGRFGSLQFSGNYTNMLKREVQAQPGEDFQDLLGNPKSMWNYDSYAKVRSDASVAWSLDKWTTTLYANYIGHTPNYLAGLNGYEYTHGASGYKAGKWASYTTYNLSVNYRVQDDLTLSLMVNNVFNKMPEQQAHSYQGTSGTPFNNYLYNVYGRTVYVQAKYDFGK
>CP023271.1|AVJ34024.1|3299464_3300319_-|iron-sulfur-cluster-carrier-protein-ApbC
MNSSSRRPHASQVQKGLAPHARIRNVIAVGSGKGGVGKSTTAVNLAVALQQLGARVGVLDADIYGPSVPAMLGLSGRPESPDNKSIEPMRAFGVDTMSIGYLVEDETPLIMRAPRATAALTQLFEDTLWDDLDYLLIDLPPGTGDIQLTLVQKIPLAGAVIVTTPQDIATLDAKKALKMFEKVEVPVLGVVENMAVHTCSNCGHVEHLFGEGGGERMAAQYGVPLLGSLPLQIGIREQGDAGTPITAAQPESAAAQAYHRAAQRLVEEVGKRPRASIPILSSLL
>CP023271.1|AVJ34023.1|3298820_3299387_-|dCTP-deaminase
MSIKSDRWIRRMSEQHGMIEPYEAGQVKQANGERIVSYGTSSYGYDVRCSREFKVFTNINSTIVDPKHFDPGSFVDIVGDECIIPPNSFALARTVEYFRIPRDTLVVCLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTPLPARIYANEGVAQMLFFQSDEVCETSYKDRGGKYQGQTGVTLPRT
>CP023271.1|AVJ34022.1|3298553_3298721_+|hypothetical-protein
MRFNIVAAILLILIGLFMLASNLGWTNLNLSRLLLTWWPLGLVAVGIAILFGRGK
>CP023271.1|AVJ34032.1|3321003_3323010_+|peptidase-M13
MPNFRPLAIALGISLATLVPTHDAFAAKKKAARAPAVSAQCSDFYDATNAGWLKANPVPQTGAATALGQLVDRSRQQQRELLDASMKAPQGNVQKLLGDFWASGLDEAAVEADGSNPIAPLLTRINAIKKAKDVPASIAALHQVGIPVAFNFGPDVDLKALDRHIGYFMQGGMGLPDPAFYTRTDADTVALMGRYRNYVKQILALTGTPAAKLDAESQAVIALETELARNAQSLAGINNPFNNYAPISTKDLNSRYRNLQLDAFLKAQGVNDDLVSLADPALFKQLDGMVTKLKPDQWKAYLRWRVGDSMAPYLSKAYRDAEFEFRGRVLRGETLPPQRWESVLDAINVAAGPMVGREYAARYLSAEDRRQAAWIVDKVREVQIEAVKNNSWMSAEAKTEAQAKLAALKIEIGTPLRDLDYSVQPMGRGSFGGNMLIASTWRHREEMKRIGKGNADRRWDVLPQQPSLAYDLAQNRLIVTAAILQGPVFNAKADAADKFGSFGGLVGHELTRAIDAKGALVDAKGELRSWWTPADKTAWTLLGTRVASQYGAYEFPGVKGAKVNGTLTQEENLADIAGLELAWAAYTAQEPKAKPAQQQGFFRAWASLWPQQLSPNEAARRLTADIRAPGRWRTNGPLSNLPAFGASFSCKPGQPMQRTDGEQIKVWR
>CP023271.1|AVJ34033.1|3323072_3324728_-|saccharopine-dehydrogenase
MKILILGGYGVFGGRLVRLLADLPMLELLIGGRNLAAAQAFCASYVGQSTLRPLQVDRQRLATALQAERPDLVVDASGPFQDYGEHRYGAIEACIAAGIDYLDFADAADFVFGVSQYDAQARAAGIYALSGVSSFPVLTAAVLREMATHMDIVSVEGGIAPSPYAGIGLNVMRAVVGYAGAPVKLRRNGRDGHGIGLAESRRFTVAVPGRLPLRNLHFSLVDVPDLQVLPPEHPTMTDIWMGAGPVPEILHRVLNLLAKARLHLKLPSLEPCSRLFYTVLNLMKFGEHRGGMIVRAVGTRDGARVEQSWHLLAEADDGPYIPSMAIEAVIRKQLAGDRPSPGARPATHALELSDYDRLFDGRTIHTGFRRDMPGASLYQRLLGSAYAQLPASVQALHAPSAAKRWSGTASVERGGGLLSRLLGNVFGFPAAGEAVPVSVEFTAEAGGERWTRTFAGRRFSSLQTLGQGRNEALLVERFGAVSVALALLVDNGRLQLVPRRWSILGLPLPQWLLPGENSFEGDEDGRFVFDVEIGAPVVGRIVHYRGTLKPA
>CP023271.1|AVJ34034.1|3324853_3325336_+|hypothetical-protein
MAHKNTICVWYDNGALEAATFYAKTFPDSEVTAVHHAPGDFPDGKQGDVLTVEFTVCGIPCVGLNGGPTFKHSEAFSFQISIEDQAETDHLWNAIVGNGGQESQCGWCKDRWGVSWQISPRMLIEAVTSKDKALAKRAFNAMMPMKKIDIATIEAAIRNA
>CP023271.1|AVJ34035.1|3325332_3326919_+|FAD-dependent-oxidoreductase
MTTLDTIIVGGGHNGLVCAAYLARAGQRVLVLERRGILGGAAVTEEFHPGFRNSVASYTVSLLQPKVIEELQLHAHGLRIVARPANNFLPLPDGRYLLSAPGRTQAEVAKFSERDAQALPAYEARLEVFADVLRDWALRPPPDLGVMAGWRALPALWQMGRLGRELAALDPALRQELLDLFTLSAAEYLDRWFESEPIKALFGFDGIVGNYASPYTPGSAYVLLHHVFGQCNGVKGAWGHAIGGMGAISQAIAASARAAGAELRVDAGVQHLLVEDGRVVGVALSGGESLRARAVVANVNPKLLYEQLLQPAQVPVTTRERMANWRCGSGTFRMNVALSRLPDFRALPGPGDHLSAGIIMAPSLDYMDRAWLDARREGWSREPIVEMLIPSTLDDSLAPPGQHVASLFCQHVAPELPDGRHWDDHRDTVADLMIATVDHYAPGFAGSVLGRQALSPLDLERTFGLIGGDIFHGALSANQLFSARPMVGQAGYRGALPGLYLCGAGTHPGGGVTGAPGHNAAQVVLADA
>CP023271.1|AVJ34036.1|3327027_3327702_-|DUF1751-domain-containing-protein
MFPRLPTVTKALLIANAILFLLQQPFLLGMQTFEPFMLQPLQQGFDAFSPGGNFQPWQLLTYGFLHGSFFHLFFNMLAVFMFGAPLEQTWGEKRFLTYYLVCVVGAGLCQLLVGTMLDNPATVLGASGGVFGLLLAYGMLFPNQRVMLLFPPIPMKARTFVILFGVGELVLGMTGWQPGVAHFAHLGGMLFGWLLIRYWRGQPPFNKRRPPGPPKRPNHLRSVK
>CP023271.1|AVJ35343.1|3327795_3328104_-|cysteine-methyltransferase
MAVIHAIPPGQVMGYGQVAMRAGLPGRARLTARILGQNDDPSLPWHRVLRSDGRIAMAEGSAGWREQSQRLRAEGVIVENGRVRMPATDPAAALDAAVWGPG
>CP023271.1|AVJ34037.1|3328130_3329051_-|EamA-family-transporter
MSTSSPRIATTSPRIALGGIGLAAIGAIAASGKAIIVKLGLRHGVDATTLLALRMLMALPLFALMAVWASHRAAPLSWADRARVLWLGFTGYYLSSLLDFQGLQYISVTLERLILYLNPTLVLLINVLLARQRPGRWQVGALVLSYLGVLIAFGHDLQREGGQIILGSLLVLGSALSYALYLFGSGQVVARIGAVRLTAYASCVASVLVLLHFTITHPLPLLWQAPAAVQWLSLINATVCTVLPVLAIMLAVQRVGSSLAAQVGMLGPVSTIVMSLWLLDEPMGPAQIAGTVLVLIGVLLVTRLRR
>CP023271.1|AVJ34038.1|3329534_3330893_-|glutathione-disulfide-reductase
MNTPSYDYDLIVLGGGSAGLAGAIRAAQHGKRVALLEPGELGGTCVNVGCVPKKAMWLAADLAERIGLASAMGFDVAPRPALSWKELVIHRQAYISNIHTSYHKRLDETGVVRIPARGHLLDAHTVACSDGVRYSAAQILIATGAHPQRPDIPGAELGLVSDDFFDLRAAPAEVAIIGGGYIAVELAGLLQALGSKVSLLVRGSRLLERFDYELTAQLAENLRQQGVRIHFDYRLRELKRDGERVRAFGHDGPIDSVFDAVFFATGRRGNSKDLGLEALGIGIGEHQQVEVDAWQTTAVPSVHAVGDIAGKVGLTPVAVAAARRLMDRLFGGRPDAKMDYDNVASVVFSHPPLGAVGMSEEDARARFEQVTVYHSRFRPMLQALANGTQRSLFKMVCAGPEERVVGVHLLGEAADEILQGFAVAVKMGATKAQFDDTVAIHPTSAEEVVLMR
>CP023271.1|AVJ34039.1|3331064_3332309_-|hypothetical-protein
MTDLHAGCPVNTASPSLQPVASGERIAVLDILRGFALLGILLMNIEALSGPLDLAFTGIDAHWQGIDYWADAFVYVFVQGKFFTLFSLLFGAGFAVMAQRAEAAGRQFTPFYLRRSAGLLLIGLCHALLVWSGDILVLYALASLPLLACREAPRSWLPWMGLLVYALGVALMLLVGAMVSMATPQDLQKMLVDAQQGIDQQRLVYGQGDWMQANVQRLHEFGASLGGMFISGPEVLGMFLLGAWFAGSGALTAPERFPRLYAGLRWIALPLGLLATLAGVLWKPYLAPGVYDLPTTAAMALVAVGGVPMCLGYLAWIVHWRARMGWLAPVGRMALTHYLAQSVVCTLLFYHYGLGWFDVLPRAWQLLLALLLFAAQVIFSHLWLRCFRFGPMEWLWRAMTYRQWPALRRGAGQA
>CP023271.1|AVJ34040.1|3332407_3332890_-|peptidylprolyl-isomerase
MKIEKDRVVRFHYTVSEAGQEPIESSKDRGEPLAILIGHGNIIPGLENAMMDKEAGATFDVDVKAADAYGERRDGLSQRVPKKHFGTAKLVPGQQVVLQTNFGPRAVTVQKVGMSVVDVDLNHPMAGKDLHFDVEIVDVREAGKEELEHGHVHGDGGHQH

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Crispr_ID: CP023271_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023271_14

3487738-3487878

Orphan

Consensus_repeat	Method
TGCCAACCTTGGTTGGCACACCTCTGCCGGCCAGCGGCCGGCACTACCGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023271_14

>merge|CP023271|14|3487738-3487878|CRISPRCasFinder
TGCCAACCTTGGTTGGCACACCTCTGCCGGCCAGCGGCCGGCACTACCGCAACAGGTGCCGGTCAAGGCTGACCCACCGCTCCGGTAGATGCCAACCTTGGTTGGCACGCCTCTGCCGGCCAGCGGCCGGCACTACCGCAA

>CP023271|14|14|3487738-3487878|CRISPRCasFinder
TGCCAACCTTGGTTGGCACACCTCTGCCGGCCAGCGGCCGGCACTACCGCAA	CAGGTGCCGGTCAAGGCTGACCCACCGCTCCGGTAGA
TGCCAACCTTGGTTGGCACGCCTCTGCCGGCCAGCGGCCGGCACTACCGCAA

Protein	Signature genes	Signature genes Name	Protein_function
CP023271.1\|AVJ34167.1\|3482239_3483532_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
CP023271.1\|AVJ34172.1\|3487916_3488807_-\|cytochrome-C-biogenesis-protein	unknown	unknown	gnl\|CDD\|237667
CP023271.1\|AVJ34179.1\|3501530_3504149_-\|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD	unknown	unknown	gnl\|CDD\|131386
CP023271.1\|AVJ35356.1\|3499512_3500697_-\|2-methylaconitate-cis-trans-isomerase-PrpF	unknown	unknown	gnl\|CDD\|131387
CP023271.1\|AVJ34177.1\|3497952_3499413_-\|2-methylcitrate-dehydratase	unknown	unknown	gnl\|CDD\|181845
CP023271.1\|AVJ34174.1\|3489579_3490161_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|225104
CP023271.1\|AVJ34171.1\|3486228_3487224_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|176183
CP023271.1\|AVJ34176.1\|3492869_3497777_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225248
CP023271.1\|AVJ34165.1\|3480751_3481408_+\|endopeptidase	unknown	unknown	gnl\|CDD\|366703
CP023271.1\|AVJ34164.1\|3479781_3480747_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|341130
CP023271.1\|AVJ34180.1\|3504258_3505416_-\|2-methylcitrate-synthase	unknown	unknown	gnl\|CDD\|183463
CP023271.1\|AVJ34163.1\|3477420_3479547_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
CP023271.1\|AVJ34178.1\|3500731_3501436_-\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ34173.1\|3489066_3489549_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239311
CP023271.1\|AVJ34168.1\|3483826_3484012_-\|DUF2065-domain-containing-protein	unknown	unknown	gnl\|CDD\|225782
CP023271.1\|AVJ35355.1\|3487312_3487684_+\|response-regulator	unknown	unknown	gnl\|CDD\|381093
CP023271.1\|AVJ34166.1\|3481438_3482095_-\|hypothetical-protein	unknown	unknown	unknown
CP023271.1\|AVJ34170.1\|3484939_3486076_-\|FtsH-protease-activity-modulator-HflK	unknown	unknown	gnl\|CDD\|259802
CP023271.1\|AVJ34175.1\|3490435_3492820_-\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|183049
CP023271.1\|AVJ34169.1\|3484079_3484943_-\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803

Protein	Function_ID	Function_description	E-value
CP023271.1\|AVJ34167.1\|3482239_3483532_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
CP023271.1\|AVJ34172.1\|3487916_3488807_-\|cytochrome-C-biogenesis-protein	gnl\|CDD\|237667	PRK14299, PRK14299, chaperone protein DnaJ; Provisional.	7.77423e-74
CP023271.1\|AVJ34179.1\|3501530_3504149_-\|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD	gnl\|CDD\|131386	TIGR02333, 2-methyl_citrate_dehydratase_Fe-S_dependent_AcnD, 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) ().	0
CP023271.1\|AVJ35356.1\|3499512_3500697_-\|2-methylaconitate-cis-trans-isomerase-PrpF	gnl\|CDD\|131387	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126. [Energy metabolism, Fermentation].	0
CP023271.1\|AVJ34177.1\|3497952_3499413_-\|2-methylcitrate-dehydratase	gnl\|CDD\|181845	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase.	0
CP023271.1\|AVJ34174.1\|3489579_3490161_+\|bacterioferritin	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	2.01751e-33
CP023271.1\|AVJ34171.1\|3486228_3487224_+\|oxidoreductase	gnl\|CDD\|176183	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	8.81335e-164
CP023271.1\|AVJ34176.1\|3492869_3497777_-\|hypothetical-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
CP023271.1\|AVJ34165.1\|3480751_3481408_+\|endopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.5897e-25
CP023271.1\|AVJ34164.1\|3479781_3480747_+\|murein-L,D-transpeptidase	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	1.83122e-26
CP023271.1\|AVJ34163.1\|3477420_3479547_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.70882e-77
CP023271.1\|AVJ34180.1\|3504258_3505416_-\|2-methylcitrate-synthase	gnl\|CDD\|183463	PRK12351, PRK12351, methylcitrate synthase; Provisional.	0
CP023271.1\|AVJ34168.1\|3483826_3484012_-\|DUF2065-domain-containing-protein	gnl\|CDD\|225782	COG3242, COG3242, Uncharacterized protein conserved in bacteria [Function unknown].	2.12378e-11
CP023271.1\|AVJ35355.1\|3487312_3487684_+\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.3106e-35
CP023271.1\|AVJ34173.1\|3489066_3489549_+\|peroxiredoxin	gnl\|CDD\|239311	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases, it is assumed that the oxidized cysteine is directly resolved by an external small-molecule or protein reductant, typical of a 1-cys PRX. In the case of the H. influenza PRX5 hybrid, the resolving glutaredoxin domain is on the same protein chain as PRX. PRX5 homodimers show an A-type interface, similar to atypical 2-cys PRXs.	5.82689e-77
CP023271.1\|AVJ34170.1\|3484939_3486076_-\|FtsH-protease-activity-modulator-HflK	gnl\|CDD\|259802	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	1.49381e-115
CP023271.1\|AVJ34175.1\|3490435_3492820_-\|penicillin-binding-protein-1C	gnl\|CDD\|183049	PRK11240, PRK11240, penicillin-binding protein 1C; Provisional.	0
CP023271.1\|AVJ34169.1\|3484079_3484943_-\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	3.62526e-107

>CP023271.1|AVJ35355.1|3487312_3487684_+|response-regulator
MARILIVDDSPSQLLGIQRIVEKLGHQILTATDGAAGVETAKAELPDLVLMDVVMPNLNGFQATRTLARDEATRHIPVILVTTKDQDTDRMWGMRQGAKAYITKPFSEDELSEVLERVFAGQG
>CP023271.1|AVJ34171.1|3486228_3487224_+|oxidoreductase
MAPTTPFTAFRIEKDDAGYRSGLVPLRLDDLNPGQVLIRAHWSSVNYKDALAGTGKGRILRRFPLVGGIDVAGTVVASTDPAWREGDAVLATGCGLSETRDGGYSQYVRLESSAVIAQPAGLSPREAMVLGTAGFTAALALLRLQDNRQTPALGPLAVTGASGGVGALAVDIFSRAGYAVHAISGKPEQSDFLRGIGAAEVLPRDALADTGPLQSARFGGGLDNAGGPMLASLLAQTVPYGSVVSAGLAASPTLDMTVMPFILRGVSLLGVSSANAPRALREEVWARLGDAWKPQHLDRICTAEVGLDGLPAVFDRMLAGGSLGRTVVRID
>CP023271.1|AVJ34170.1|3484939_3486076_-|FtsH-protease-activity-modulator-HflK
MAWNTPGGNKGGQGPEDNRRGPFGSRGGGNGGGWGGLPGPLKDLFDGGILRWVVAAVVLLVLFSSFQLIGEQQRGVVLRFGQFSRVLTPGPNFKLPWPIESVTKVNATEIKTFSIQVPVLTRDENIVNVSLNVQYRIDDPQQYLFGTVDANQVLEQSAQSAVREEVGRADLNAVLNNRGPLAVAAEERLQTLLRAFKTGLTVTGLTLQDARPPEEVKPAFDEVNGAQQVKERLINEAQAYAAKVVPEARGQASRARTTAEGYKQAVVSKAEGDGQRFSLLQAQYKDAPEVTRKRLWLETVQQVLSENRKVIGGDGRQLIYVPMTGDTRASTSAPAPVPNPDVVMPSLPGTTAVEASRDPGRPVGRPTGRSSGREEGSR
>CP023271.1|AVJ34169.1|3484079_3484943_-|protease-modulator-HflC
MRNSIWIAVVVAVLLGLLGSVYVVREDQTAMVLNLGKVVRSDIKPGLHFKLPVVETVRVFDRRFQVLDTAPARYFTAEQKDVSVDFFAIGYISNVGDYFRATGGDPRIANARLAPIITDSLRNQINSRTLQQLVSGDRSELIAEQLKGINEAVAGLGMQMIDLRIKQVDLPTDSQVINDVYERMRAQRKQEAAKLRAEGEEQSLTIRAQADRDSTVLIAEAERDAQRLRGEGDAEAARIYGKAGSADPSFYAFYRSLEAYRGSMTDGNGVIVLDKNDPFLQYLKNDR
>CP023271.1|AVJ34168.1|3483826_3484012_-|DUF2065-domain-containing-protein
MKDLFAAVCLVAVLEGLLLFVAPVAWKRMAERLLDLPSPALRSFGGLVLLAGLSLLWWVRH
>CP023271.1|AVJ34167.1|3482239_3483532_-|adenylosuccinate-synthase
MGQSVVVLGAQWGDEGKGKIVDLLTEEIGAVVRFQGGHNAGHTLVINGKKTVLHLIPSGILRDDALCLIGNGVVISPAALQKEIAELETSGVEVRSRLKISPAAPLIMPYHIALDQARERAAGGKAIGTTGRGIGPAYEDKVARRGIRIADLHYPKQLEELLRTALDYHNFVLTKYLNTDAVDFQKTFDEALAFGEYVQPMKSDVAGILHDLRKQGKRVLFEGAQGALLDIDHGTYPYVTSSNTTVGGALAGAGVGADAIDYVLGIAKAYATRVGGGPFPTELDDEIGQGIRDRGAEYGASTGRPRRCGWMDIVALKRAVAINGISGLCITKLDVLDGMEKLKVCIAYEYNGKRTEYAPLDAQGWEECTPVYLEFPGWTENTHGITNWDDLPPAARAYLRSLEELAGCPISIVSTGPDRDHTMVLQDPFA
>CP023271.1|AVJ34166.1|3481438_3482095_-|hypothetical-protein
MTGDVSAKGTRVLRITLWVFWGLWAVACVVLAVGAVANHLASRTQTLPLVLSPGASAEITVYRFIDDRLRLRLRYPPNAADPTLDPDVLMRVDTPNEHADFRAGVRSGPAGTNVVRRLETVETAVFTAAYFGYGRGDSLPRGRSWLRVTVLEVEPALAGRPATIEVQPPLDLLKLTDLDYLWLWPFFFWKLAALLLLVPGIALVIFTIALRRQRPRTA
>CP023271.1|AVJ34165.1|3480751_3481408_+|endopeptidase
MRLAQLIVLGLVMGVAAGWWLQRDGEPSDDTGARPLAVAQTSAAADSARAVPVEQPTTAIAAPAPAATGDTPSGLLLPVQGITPSQLQDTFTDARSEGRVHDAIDIMAAAGTPVLAVADGHVEKLFDSERGGLTVYQFEPSGRWCYYYAHLQRYADGLAEKQTIKRGDVIGYVGSTGNANPEAPHLHFEVHVLGPEKQWWKGESINPYPLLKKGDGGD
>CP023271.1|AVJ34164.1|3479781_3480747_+|murein-L,D-transpeptidase
MPMPVCRPALLALSLLMSPAFAQTPPPAGLPAPIAEKAGADTAARSPLHAQVLLDRANFSPGEIDGEVGSNQRRAVSGFQAAHGLTVTGELDDATWKALQADSVGPLANYTLTAEDVAGPFVAVPKKPADQAKLKALGFSSVEESLGERFHAAPELLKALNPGVDLSKAGSRIQVPNIAPAALPKAAKLVVDKSDSTLQLLDAQGKVIAQVPVSSGSEHDPLPIGEWKILGVYPDPPFHYNPKLFWDARKGDRKATIPPGPNNPVGRVWIDLSKPHYGLHGTPVPGHVGKTESHGCVRMTNWDVLRVAAAVDTSVPVVMQE
>CP023271.1|AVJ34163.1|3477420_3479547_-|methyl-accepting-chemotaxis-protein
MNYLRNVRVAWRLGLGFGLLLLLVAAVVATGATATMVQKRAMEQVVEVGVAKVRLLSEMLDANNQMMVVRREMLIRQGEDRANDEQRIAALVKRYEASWTAYQALPGDAEGKVIGETIAAKRALARPLNKQTSELMEQGDFPGAVALTLGPVQEAANGWNKALADGVAYEEKESREAAAEAIRLGERSLLQLLVLGGVALLAGIAASVLIGRSMTGPLARAVQLAERLSKGELDQEFRLGGRDELTQLGEAMASVRQSVQAAIGAQLQMAEQHEAGAIRYRMDASAFPGDFGRMVQATNHLVESHVQVQLLMAEVMQRYAIGDLSRDLPEYPGEKGTLTRTLAAVKQSLMAINAQIDELARAARAGDFSVRGDAAAFQYQFQAMVNHLNGMMASSQASIADVSDVLRAISHGNLTARMEGEYEGVFARMRDDANATTTQLTGIVRGIQVAADSINNAAQELAAGNNDLSRRTEQQAANLEEAAASMEELTSTVRQNAELARQADSEAHAAGVAVRETEQAMAQMATVMGEIDQSSARISEISTVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRAGVAAKEIKELIEDAAAKVQSGLAVTVESEAAIARVAQASSRTTQLMSDIAAASKEQAAGIEQVNQVVVQMDQVTQQNAALVEEATAASRALEEQAHALTTSVSVFQLEQEARMPSLPARAA
>CP023271.1|AVJ34172.1|3487916_3488807_-|cytochrome-C-biogenesis-protein
MEFKDYYATLGVEPSAGEAEIKTAYRRLARKYHPDVSKEAGAEDKFKAINEAYEALRDPEKRAAYDQLRAQGYRPGEEFNVPPNYGGGGFNFEEVFGGGGPNGGFSDFFESLFARQRGGQGAGPGPGFSSHGHAPNRDTRAKLSVPLEAAYSGDSLRITVNGKQLDVRVPKGIRPGQVIRLAGQGNHGGNLLLEVEYAAHPQFEVDGRNILYTLPVTPWQAALGTSISVPTLGGAVELKIPADSDAGRKLRLRGRGLPGSPEGDQIVELEIVAPAATDDAQKKAYRNLAKAFGETI
>CP023271.1|AVJ34173.1|3489066_3489549_+|peroxiredoxin
MTIHVGDRIPEVTLKRIREGIETLDTHALFDGRKVVLFAVPGAFTPTCSARHLPGYVEKFEAFRHRGIDVYCVAVNDPFVMKAWATDQHVPDGLLMLSDGNAELTRALGLELDASSSGMGTRSRRFALYVVDGTVRAAWIEEPGQFEVSSADYVLDHLPT
>CP023271.1|AVJ34174.1|3489579_3490161_+|bacterioferritin
MSNKPAKASNTSPSAKVAGISDRQTLRERARKNIEDGAITDSYSADRKVVIKLLNDALATEYVCVLRYYRHYFMAKGMLADAVKGEFLEHAQQEQAHAGKLAERIVQLGGEPDLNPDTLTARSHAEYKEGSDLRDMVRENLVAERIAIDSYREMINFIGDSDTTTKRILEEILAQEEEHADEFADLLDGWIGE
>CP023271.1|AVJ34175.1|3490435_3492820_-|penicillin-binding-protein-1C
MKVGSLKTRLPRLRQRLQPLWPWLRWGTAALLALLLVLDFAFPPPLPRQRDTSTLVVAADGSPMRAFADAEGVWRYPASVDSVSPLYLQALLTYEDRWFWQHPGINPLAILRAGGQLLRGGRIVSGGSTLTMQVARILDPHTRTPWGKLKQMLRAVQLEVHLSKREILALYLERAPYGGTIEGVEAASWAYLGKPAAQLSHAEAALLAVLPQAPSRLRPDRHPEAAQKARDKVLARMAELGAWTPEEVEDARIENVVARSLRPPLHAALLAQRLHSAHPGQARIQSSIDIGLQRTLEERVASYFSTLPERTSAALLVVDNQTLQARAYVGTLSFGDRQRLGHVDMVQAWRSPGSTLKPFLYAMALDDGLIHSESLLVDAPQSFGSYRPGNFDMAFNGPVSAASALRLSLNVPSVDLLQRVGAARFAARLSHAGIQLRFPPGSSPNLSLILGGTGARLEDLVGAFAALNRNGIAGRVRYTDDEPMIERRLASPGASWIVREMLESNPRPGYGVGTFDVGGRPRVAWKTGTSYGYRDAWAIGSTRHYTVGVWVGRPDGTPLPGQYGAVTALPLMFEVVDSLPRQRGDAAAAPMPASVTQADICWPTGELAEGLPAALCQRRLSAYLLDGAAPPTFPEREARRWQPGRQRYLADARTGLRVSADCSAPHEEVAREIARWPALLSPWLPKATRDASQLPALSPDCRDDGREASVALHIDGLNEGATLARAPNAEHGVRLQLRALGSEQAVDWLLDGRWIAQTRGAQLMQREFSDPGAHTLTALAADGAWTQVRFNVLR
>CP023271.1|AVJ34176.1|3492869_3497777_-|hypothetical-protein
MSGPARRMRWGWTAALLAGGLLLGLAGCRNDSGQLPKASGEAIATKAEQVKEFTLLRAYPDQKSEGLSLALEFSRPLVGTQDFDKLVRFEEKVGNDDSSWTLSDDGLTLRYPFVEAGKEFSLVVSPDLLAADGSRLGKELKQKVFSGELKPVAGFASQGSVLPAKDSRGLPVVSVNVPEVDVEFLRVREKDLPTFFSQYQRGGRRGSWELSSDYERSPINKLAEPVYVNRFILGGKQNERVLTYLPTQDIKELQEPGLYFALLKRTGDYEGEFDTAFFSVSDIGLHTRAYKDKLFVHTAALKDGASLKGIDLRVLDAKGEVVLKGSTDSNGNALLNYTLDATHVLVASSGKDTSFLPFNQPALDLSEFAVAGRDNAWFDVYAWSGRDLYRPGETVRLSALLRDNDGKPVKAQPVFLRLKQPDGKTFRETRVQPGEQGYINFEQTIPAEAPTGRWQVEFRTDPASKEAIQGMTLRIEEFLPERMKLDLDSAQKTLKPGEDLRLQANGAYLYGAPADGNRFTARMAVAAEQKPVEGLPGYFFGDPTLQLPREAKDVIDTTLPANGQLREDVSLPEEATKAKAPIAVVLSGSLYETGGRTVTRTLKRVVWPAAALVGVRPLFNPDDGADSNGNARFELMRVDAAGKPQPAKGLKITLVRELRDYHWTFNDNRWDYDFTRRFENKETRTVDAGGSAVAFDFPVEWGEYRVDVFDPSTGLTSRYPFRAGWSWGDDNRGLDARPDKVKLGLDKTGYKAGDTLEVTVTPPHAGKGVLMVETDRMLYVQDIDAKPGATYKIPVTADWERHDVYITALVFRGGSAPSKITPARAVGVVHVPMDRKGRTVAVGLAAPKQMRPEQDLPVTVSAPQLAGKVAHVTVSAVDVGILNITRFPVPDAGAHFFAQRRLGIDAYDIYSRVIESFDGGSGKLKFGGDMALQALPQAKRPTARVQTVDLFSGPVQLDAKGIARIRLKVPDFNGTLRVSALVYSDDQYGKRDVETVVRAPILAEASMPRVLAPGDRSTVTLDVQNFTGKPGQFNVRVDSEGPLSLGEGTRSVQLNADAKTTLSFPLSAREGHSVAKVRVRVDGNGFKADRRYDLPVRAAWPQVLRSQVRTLDPLAAVSLDGSLMDGLMSESVNARLLVSPLPPIPFASALQGALNYPYGCAEQTTSKGYAALILDQATSSMLGADGLDAKTRRERMEGAFGRLASMQVANGNFSMWGDDGYVNPWLTPYIAEFLLDAKDGGFAVPDNVLQKALNRLSEDLLSGGNQFYGQEKRESLKFANQAYSGYVLARVNRAPLGTLRTLYDNERSKAVGGLSLVHLGVALSLQGDAKRGQAALAAGFAKSSSERPSYFGDYGSAVRDDALMIALTHENKLAKPAWDARAVDLGRGLDARRNSGWMWLSTQEQVAIARLGKALAANQKALVAGELVIGGNSEAIGERKLFGRNFDAGQLAAGVRFTPQGQPPMFASIDVAGIPRSAPAPDNSVIGVERSYFGTDGKPWSPRPLKEGEALIVRVTITADSEMPDALLTDLLPAGLEIENLNLGDAKQWADVVVDGITISDRSEAADTKHEEFRDDRYVAALKLSRGSKANVFYLVRAVTPGTYTVPPSLVEDMYRPQLRGVGRSNPTTLTVAQP
>CP023271.1|AVJ34177.1|3497952_3499413_-|2-methylcitrate-dehydratase
MSDSHTPSNARAAWDALLVDIVDYVRDTRIDSPLAFQTAHNCLLDTLGCGLEALSFPACSKLLGPLVPGISVANGARVPGTNFVLDPVQAAFNIGAMVRWLDFNDTWLAAEWGHPSDNLGGILAVADWLGRNAAALRRPPPTVHDVLLAMIKAHEIQGVLALRNSFNRVGLDHVLLVKVATTAVVAQMLGLDRERMLNAVSLAWVDGQALRTYRHAPNTGSRKSWAAGDATSRGVRLALMAATGEMGYPSVLSAPTWGFEAVSMHGQALTLGRPFGSYVMENVLFKISFPAEFHGQTAVEAAIILHQQLRAQGRAAEDIEHIAIRTQEACIRIIDKQGPLHNPADRDHCVQYMVAIALLHGRLVAEDYEDDMAVDPRIDTLRAKMTCHEDPQLSADYLDPDKRSIANGLTVRFNDGSALPEVLVEYPLGHARRRAEGIPLLMDKFRRHLAHRFPTAQQQRVLAASLDPVALAAMPVTDYVDLYLPG
>CP023271.1|AVJ35356.1|3499512_3500697_-|2-methylaconitate-cis-trans-isomerase-PrpF
MTFLPQLRIPATYMRGGTSKGVFFRLQDLPEAAQVPGAARDALLMRVIGSPDPYGKQTDGMGGATSSTSKCVIISTASVPDHDVDYLYGQVSIDTAFVDWSGNCGNLSTAVGPFAIANGLIDPARVPRDGLCTVRIWQANIGKTIIAHVPMRDGQVQEIGDFELDGVTFPAAEIQLEFLDPSDDGDAGAMFPTGNLIDTLDVPGVGSFEVTMITAGIPTIFLNAADLGYTGTELQPAINEDKAALERFEKIRAYGALRMGLIQKLEDAATRQHTPKVAFVAPAQDYVSSSGKAIPAADIDLHARALSMGKLHHAMMGTAAVAIGTAAAIPGTLVNRAAGGGEREAVTFGHPSGTLRVGAQAALVDGQWTVSKAIMSRSARVLMEGKVRVPADTP
>CP023271.1|AVJ34178.1|3500731_3501436_-|hypothetical-protein
MGTAFYNIAGTVNTAFILLSLLGVGAQFRLVRNRRERADATDSATAVLSLNQFTVSFLAYLSFFIYGYSVTPFNHFIVWPRLLASVLVMAILVEIWRDRRSRSATTSLLTAALLLICALAGLAWGDRHVDEGRVVASAVIVVITALLAQGYAHQILLILRNGHTGAVSLRMSQLILLMDLSTIVFASAMGLRLGWPLLLLAVVSGSTKLAILYLFRWQRSAQADSRRRRLALQS
>CP023271.1|AVJ34179.1|3501530_3504149_-|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD
MNTDYRKSLPGASLDYFDARAAVDAIQPGAYATLPYVSRVLAENLVRRCDPATLTDSLKQLIERSRDLDFPWFPARVVCHDILGQTALVDLAGLRDAIADKGGDPAKVNPVVPVQLIVDHSLAVECGGFDPQAFEKNRAIEDRRNEDRFHFIDWTKLAFENVDVIPPGNGIMHQINLEKMSPVIYVQDGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAENVMLGRASWMRLPDIIGVELTGRPQPDITATDVVLALTEFLRKERVVGAWLEFFGEGAAALTIGDRATISNMCPEYGATAAMFYIDGQTIDYLRLTGREEKQVALVENYARSTGLWADDLATAEYERVLHFDLSTVVRNMAGPSNPHRRLPVSELVERGIADAAKLEAGKAEQAQGLMPDGAVIIAAITSCTNTSNPRNVIAAGLLARKANERGLLRKPWVKSSLAPGSKAVQLYLEEAGLLPDLEKLGFGIVAFACTTCNGMSGALDPKIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVIAYAIAGTIRFDIEKDVLGVDTDGNEVRLKDIWPSDAEIDAVVKAAVKPEQFRSVYNPMFNVRVEHGAAVSPLYDWRPQSTYIRRPPYWEGALAGERSLAGMRALAVLPDNITTDHLSPSNAILASSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNEMVRNEDGSVKQGSLARVEPEGKVMRMWEAIETYMERKQPLIIIAGADYGQGSSRDWAAKGVHLAGVEAIVAEGFERIHRTNLIGMGVLPLEFKPGTTRLTLGIDGTETFDVIGERTPRAELRVVIHRRDGQDVIVPVTCRLDSDEEVAIYEAGGVLQRFAQDFLEGAKVA
>CP023271.1|AVJ34180.1|3504258_3505416_-|2-methylcitrate-synthase
MNDTTATPTFKPKKSVALSGTAAGNTALCSVGRSGNDLHYRGYDILDLANTSEFEEIAYLLVHGKLPTRAELVSYKAKLKSLRGIPAAVKAALEELPPSAHPMDVMRTGVSVLGCVAPEKDDHNHPGARDIADKLMACLGSMLLYWYHWSHNGRAIDVETDDDSIGGHFLHLLHGEKPQDSWVKAMHTSLILYAEHEFNASTFACRVIAGTGSDMYSAICGGIGALRGPKHGGANEVAFEVQKRYDNPDEAEEDIKARVERKEVVIGFGHPVYTVSDPRNKVIKDVARELSEEQSSMKMYDIAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTAGWSAHIVEQRIDGKIIRPSANYIGPEDRDFVAIDKRS

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Crispr_ID: CP023271_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023271_15

3874259-3874522

Orphan

Consensus_repeat	Method
CNAGTAGATCCACGCCATGCGTGGAT	CRT

5 spacers

The CRISPR arrays of CP023271_15

>merge|CP023271|15|3874259-3874522|CRT
CCCGGAGATCCACGCCATGCGTGGATACGACCAGCCACCCCGCACAATCCAGTAGATCCACGCCATGCGTGGATAGGGCCCCGTCCCGCACACGCAAGTAGATCCACGCCATGCGTGGATACGACCAGCCACCCCGCACAATCCAGTAGATCCACGCCATGCGTGGATAGGCCCCGTACCGCACACGCAAGTAGATCCACGCTGTGCGTGGACGGGACGTTCCCCAACCCCGCACGATTCAGTAGATCCACGCCATGCGTGGAT

>CP023271|15|1|3874259-3874522|CRT
CCCGGAGATCCACGCCATGCGTGGAT	ACGACCAGCCACCCCGCACAAT
CCAGTAGATCCACGCCATGCGTGGAT	AGGGCCCCGTCCCGCACACG
CAAGTAGATCCACGCCATGCGTGGAT	ACGACCAGCCACCCCGCACAAT
CCAGTAGATCCACGCCATGCGTGGAT	AGGCCCCGTACCGCACACG
CAAGTAGATCCACGCTGTGCGTGGAC	GGGACGTTCCCCAACCCCGCACGAT
TCAGTAGATCCACGCCATGCGTGGAT

Protein	Signature genes	Signature genes Name	Protein_function
CP023271.1\|AVJ34480.1\|3887749_3890401_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|226654
CP023271.1\|AVJ34479.1\|3886511_3887681_+\|porin	unknown	unknown	gnl\|CDD\|226269
CP023271.1\|AVJ34476.1\|3880947_3881703_+\|Basic-Secretory-protein	unknown	unknown	gnl\|CDD\|367948
CP023271.1\|AVJ34471.1\|3873663_3874113_-\|transposase	unknown	unknown	gnl\|CDD\|376616
CP023271.1\|AVJ34475.1\|3877606_3880951_+\|alpha-1-2-mannosidase	unknown	unknown	gnl\|CDD\|377950
CP023271.1\|AVJ34466.1\|3866801_3867482_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
CP023271.1\|AVJ34467.1\|3867618_3868266_+\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|225316
CP023271.1\|AVJ34478.1\|3884824_3886180_-\|C4-dicarboxylate-transporter-DctA	unknown	unknown	gnl\|CDD\|234968
CP023271.1\|AVJ34477.1\|3882303_3884595_-\|NADP-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|235976
CP023271.1\|AVJ34469.1\|3871283_3872582_-\|3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|235589
CP023271.1\|AVJ34464.1\|3862376_3865538_-\|multidrug-transporter-AcrB	unknown	unknown	gnl\|CDD\|223911
CP023271.1\|AVJ34472.1\|3874529_3875861_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225844
CP023271.1\|AVJ34481.1\|3890615_3891272_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP023271.1\|AVJ34468.1\|3868282_3869641_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273829
CP023271.1\|AVJ34462.1\|3860019_3860793_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|183716
CP023271.1\|AVJ34473.1\|3875841_3876957_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|340846
CP023271.1\|AVJ34463.1\|3860909_3861818_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161
CP023271.1\|AVJ34470.1\|3872642_3873560_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|181542
CP023271.1\|AVJ34474.1\|3876972_3877170_-\|zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|226826
CP023271.1\|AVJ34465.1\|3865541_3866678_-\|efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776

Protein	Function_ID	Function_description	E-value
CP023271.1\|AVJ34480.1\|3887749_3890401_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	6.08374e-78
CP023271.1\|AVJ34479.1\|3886511_3887681_+\|porin	gnl\|CDD\|226269	COG3746, OprP, Phosphate-selective porin [Inorganic ion transport and metabolism].	2.59181e-108
CP023271.1\|AVJ34476.1\|3880947_3881703_+\|Basic-Secretory-protein	gnl\|CDD\|367948	pfam04450, BSP, Peptidase of plants and bacteria. These basic secretory proteins (BSPs) are believed to be part of the plants defense mechanism against pathogens.	1.40457e-13
CP023271.1\|AVJ34471.1\|3873663_3874113_-\|transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	8.48063e-09
CP023271.1\|AVJ34475.1\|3877606_3880951_+\|alpha-1-2-mannosidase	gnl\|CDD\|377950	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92. Members of this family are alpha-1,2-mannosidases, enzymes which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation.	0
CP023271.1\|AVJ34466.1\|3866801_3867482_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	1.00303e-28
CP023271.1\|AVJ34467.1\|3867618_3868266_+\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	2.28466e-64
CP023271.1\|AVJ34478.1\|3884824_3886180_-\|C4-dicarboxylate-transporter-DctA	gnl\|CDD\|234968	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.	0
CP023271.1\|AVJ34477.1\|3882303_3884595_-\|NADP-dependent-malic-enzyme	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
CP023271.1\|AVJ34469.1\|3871283_3872582_-\|3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|235589	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed.	0
CP023271.1\|AVJ34464.1\|3862376_3865538_-\|multidrug-transporter-AcrB	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP023271.1\|AVJ34472.1\|3874529_3875861_-\|hypothetical-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	2.56326e-18
CP023271.1\|AVJ34481.1\|3890615_3891272_-\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.0115e-61
CP023271.1\|AVJ34468.1\|3868282_3869641_+\|hypothetical-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	9.31005e-108
CP023271.1\|AVJ34462.1\|3860019_3860793_-\|short-chain-dehydrogenase	gnl\|CDD\|183716	PRK12744, PRK12744, SDR family oxidoreductase.	7.17544e-175
CP023271.1\|AVJ34473.1\|3875841_3876957_-\|glycosyl-transferase	gnl\|CDD\|340846	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences. This family is most closely related to the GT4 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.	9.48127e-51
CP023271.1\|AVJ34463.1\|3860909_3861818_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.39964e-96
CP023271.1\|AVJ34470.1\|3872642_3873560_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	gnl\|CDD\|181542	PRK08733, PRK08733, LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase.	0
CP023271.1\|AVJ34474.1\|3876972_3877170_-\|zinc-finger-domain-containing-protein	gnl\|CDD\|226826	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown].	6.41091e-14
CP023271.1\|AVJ34465.1\|3865541_3866678_-\|efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	5.16759e-58

>CP023271.1|AVJ34471.1|3873663_3874113_-|transposase
MASPRLRYGRYSRTGNVYSLTTTTHGREPFFSDAGNVAVLVDALRFVERSGISHSLAWVVMPDHLHWLMELQKGTLAQCMALLKSRSSRQLNRISGRKGPLWQHGYHDHAVRTDESLHDNAMYILGNPVRAGLAGGLGDYPHAWCRWPL
>CP023271.1|AVJ34470.1|3872642_3873560_+|lipid-A-biosynthesis-lauroyl-acyltransferase
MSDATTAVRPSLRDPRNWPMFAVMFTAFGIARLPWTLQRVLGRGVGSIAWRLAGSRRHAAEVNLKLCFPEKDEAWRKRLVRDSFDALGVGIFECARSWWGSIDSIRPQVHIEGLEHLKQMQAEGRGVLLVSGHFMTLEMCGRLLCDHVDLSGMYRKHKNPVYEWAVKFGRLRYAKAMYANEDIRATVRHLKKGGFLWYAPDQDMRGKDTVFVPFFGHTASTITATHQLARMTGCAVIPYFHRREGGKYFLKIGAPLENFPSEDVEADTARVNQAIEQMVREAPDQYLWIHRRFKRQPGGRSDFYK
>CP023271.1|AVJ34469.1|3871283_3872582_-|3-deoxy-D-manno-octulosonic-acid-transferase
MRKDPVEWILRGLYSAVLYLLLPITVYHLVWRGFRVREYFRRWDERYASYPQPSGQPRVWLHAVSVGEVNAAAPLVNALRAQRPDIRWVITTITPTGSERVRALWGDALDHVYLPYDVPGSVNRFLGHFQPSLALILETELWPNMLFGCRDRRIPVYILNARLSARSLRGYRVLAALIRRALRTVTCVAAQSQDDAARFVQLGAAPEQVQALGNLKFDIATPDVQPFIEQFHAHVPATRPVWIAASTHDGEEQAVIDLHRRLRQQHPDLLLLWAPRHPERFPKVEALAREQGWNVSTRRAQQWPDARSDVFVIDTLGELMPFYGCAQVAFVGGSLQAIGGHNLLEPAAMGTAAVTGPHLHNFAEISRRMREAGALLIGEDVQAVGDLLLHLLDDVQAREDMARAGCTLVSNGRGALQRTLQLVAPHLPPPLA
>CP023271.1|AVJ34468.1|3868282_3869641_+|hypothetical-protein
MIRRSLAVALATALLPLSAHAADLLQVYEMARNGDPQLSAAESTRLYDKEGAVQARAALLPQINGQAQLSRTRTEADHDANSGTVTSKRRNYTIDGSQTLFNWTQINNLRSQRELSKAADFTLDSANDNLIVRTSAAYFNVLVAIESLNAAQTNEAAAKKQFDFADKRLEVGLAPITDVHEARAQYDQARANTIVAQNTLADNYQALTELTGQPVVNLKGLPADFRPEVPANRGNLDQLVQQATTQNPALKAQELKVGAAEAGVQAARGGHYPTLSLGGSWGKSATWGDSVGAGSLSPDARTNSIGLTLSVPIFSGGATQSGVRQALAQRDIAQDGFEQQKRALDRNTRNAYQTLVQGISEVEARRLAVVSAQSAYDASQVGLEVGTRTVLDVIQNQRILFSAQLDYAQARYNFLQNRLLLSQAVGGLDVAELQDINRLLTQDAGNPSTTTN
>CP023271.1|AVJ34467.1|3867618_3868266_+|protein-L-isoaspartate-O-methyltransferase
MTIDYAHARELMVEQQIRPWDVLDIKVLDVLARLPREAFVADAHRALAYADVELPIGNGQKMMKPVIEGRTLQALDLQPGDEVLEIGTGSGFLSACIGALARDVLSLEIDPELAAAARARLDATGLGTNVRVEVADGLAWQTERRFDVICVTGAVDVVPSQFASWLRPGGRLYVIQGRSPAMEALLVKADGSTESLFETDIDYLRGAAPAPQFHL
>CP023271.1|AVJ34466.1|3866801_3867482_+|TetR/AcrR-family-transcriptional-regulator
MSSPTSRKPTAKPAAKAAGPGRPKDLGKRAAILEAAKTLFIEQGYSGVSMDSIAAQAGVSKLTVYSHFGDKETLFSEAVQSKCIEMLPDALFVADVEGPLRDQLLGIGMAFFEMITSDAALSIQRMMMAPETDERLRELFWQAGPQRTCEALADFMRSRAERGELDIPDCYIAGQQFLTLVKGEVHMHMMCGMPLSPVETDAAIHVAASVDFFLRAYAPRGAGHAG
>CP023271.1|AVJ34465.1|3865541_3866678_-|efflux-transporter-periplasmic-adaptor-subunit
MKNMRWLGVGVLVVVLAACGKQAAEPAAAIPVLVVHPTTQDGQAAAAYPGEVRARQESPLSFRVGGNLVKRLVDAGERVKKGQLLAELDAADYASQAAASQAQLAAAEADLVRARDDQKRYAKLAEDQLVSRSALDQQTAAFKAAQGQANAARANLAVARNQAEYAQLRAPADGVIASRQAEAGQVVSAGQTVFTLAADGGREVLIALPESSIRDYKVGQSVQVELWNRPGQLLPGTLREIAPAADAQARTYATRVSLAPEALSEVELGQSARVFATAGRSGALQLPLAAVLRGSDGKASVWVVNPSNGALKATPVQVGAYGAQAVPVVSGVGATDWVVAAGGHLLREGQVVTPVDRQNRPVLAPSVAKPAPAAGKGR
>CP023271.1|AVJ34464.1|3862376_3865538_-|multidrug-transporter-AcrB
MRRFNLSEWALGNRALVLFAMLAFAVIGAWSYKHLGQSEDPPFTFKAMVVRTMWPGATAEQVSRQVTEPIEKALMNTGEYEFIRSYSRPGESQVIFMARDSLRSKQIPDLWYQVRKRVGDIRATLPREIVGPFYNDEFGDTFGNIYALTGEGFDYAVMRDYADRIQLELQRVPDVGKIDLVGLQDEKVWIELSNTKLATLGVSLQQVQQALADQNAVSATSFFETPTDRVQLRVTGQFDSIEDIRKFPIQAGERTLHLGDIAEVKRGFADPASPKMRFMGQDAIGLAVAMKDGGDILKLGATLDAEFERLQKTLPAGMQLRKVSDQPHAVEESVGEFVQVLTEAVVIVLLVSFFSLGLRTGLVVGVTIPLVLAMTFFVMHYFDIGLHKISLGALVLALGLLVDDAIIAVEMMATKMEQGYDRLRAASFAWESTAFPMLTGTLITAAGFLPIATAASSTGEYTRSLFQVVTIALVVSWIAAVLFIPYLGDKMLPNLFNPQLPKPDSLAGRWRAKRLQWADRHPSLARWIAPKEHAHDHDPYQRPFYTRFRAFLDTCLRHRWWVIAATIALFIGSLMLFRFVPQQFFPDSTRPELMVDIELAEGASLAATQAQADKLEKLLKGREGISNYVAYVGTGSPRFYLPLDQQLPATNFAQFVVLTEDAKARESTRDWMLKDVISQFPDVQMRVTRLENGPPVGYPVQMRVSGEHIAQVQAIARQVEAKVRENPHVMNVNLDWSEPSKVVRLVIDQDRARALGVSSAQVSQFLSSSLSGMSVSTYREGNRQIEMLLRGPDNERAQLDLLGSLAIPTSSGTAVTLSQVARLEYAFEDGIIWHRNRLPTVTVRADISDGMQPLDVVQQIVPTLDGIRADLPSGYLLETGGSVEDSARGQNSIKAGMPLFLIVVATLLMLQLRSFSRAAMVLVTAPLGIIGATLFLLLFRAPFGFVALLGTIALAGMIMRNSVILIDQIQQDIDAGHDRWHSIIDATVRRFRPIVLTALAAVLAMIPLSRSAFYGSMAISIMGGLIVGTVLTLVFLPALYAAWFRVKPDESGA
>CP023271.1|AVJ34463.1|3860909_3861818_+|LysR-family-transcriptional-regulator
MDRIERFRIFARVVECTSFTRAADQLGLPRSTVSAAVAELEQRLGTRLLQRSTRRVSTTHDGDTFYVRCLRLIAEVEDAESLFRQDDAQPSGLLKIDVPSRIGRRIIAPALPDFFARHPQVELDLGMTDRAVNLIEDGCDAVLRVGQLGDSSLVARTLGQLDFVNVAAPAYLHAHGVPQHPTDLQQHRAVNYASPTTARVEPWEWQDGAQLRTLPMPGWVRVNSAEASIACCVAGLGLLQIPRYDVQAELQTGALVEVMPQYAAQPLPVTLLLPHRQHRAQRVQVFLDWLVPLLRERLQLQG
>CP023271.1|AVJ34462.1|3860019_3860793_-|short-chain-dehydrogenase
MTDHRIQGKTALIAGGAKNLGGLIARDFAEQGAKAIVIHYNSAATQADAEATVAAVQAAGAKAVALQADLTSAAAMERLFADAVAAVGRPDIAINTVGKVLKKPMLDISEAEYDQMSAVNAKTAFFFLKEAGRHVNDGGRICTLVTSLLGAFTPFYSSYAGTKAPVEHFTRAASKEFGERGISVTAIGPGPMDTPFFYPAESADAQAYHKTAAALSAFTRTGLTDIADIVPWIRFLVTDGWWMTGQTILVNGGYTTK
>CP023271.1|AVJ34472.1|3874529_3875861_-|hypothetical-protein
MPTSLADATPPLRDERAGRWAPWWVLAYVALWPLPGIAETVLGLGALYAAARMVIRRVQHRPHLLSPAAWALTSILFLGYWLPQAFSAFDAVDPSASWTKAAAGLRYLPFMWLVAIAVATPQRRRLTLGGLAVITGLWTLDALVQALAGTSPWFWSLQQIKLAISGHALCPAEEAALADRLSGALGPCNLKFGQVLASLSPFLLLPVARRFGNAGWLLAAAAVGVVLLLAGSRASWITFGLVVAYSGVRQLGWKRLGLLALVGILSASVLAASVPQLRERVARTAMAWDGGEDGVEQALSGRTRIWSAAACMIEAHPINGVGARGFRDAYPHCVAHEGPAVWGTMPALHAHQIVLEILAETGVLGLLLWLAAVAQAWRAWRFAPAPARERARPAMLALAVTVFPLNTHLAFYSAFWGGLTVLLAALFVGTLLAREPDDQPGAG
>CP023271.1|AVJ34473.1|3875841_3876957_-|glycosyl-transferase
MRRLTVVQLLPALHSGGVERSTLEIAAALVAAGHRALVVSAGGRLVQPLLDSGAEHLTLDIGRKSLLTLRHLPTLRRLFTEVGADIVHARSRLPAWLGLYAIRAMQPAQRPHWVTTVHGLNSPSRYSAVMTSGERVICVSNSVRDYVHTHYPTVPHDRLQVIPRGVDVSQFPRVARADRRPRLALATDYPWLAQVDGPLLLLPGRGTRLKGHAHALQLLADVRAAGVPAQLWMLGTDEPGRETYVAELRRQAAALGVTGAVHISTPTARIAQAYAASDLVLQLSDKPEAFGRTVVEALSVGRPVLGWNHGGVGELLQQLQPSGAVPLGNAQLLGERALALLAQPPSLPGRIPFTLQAMQRDTLRLYADLAG
>CP023271.1|AVJ34474.1|3876972_3877170_-|zinc-finger-domain-containing-protein
MSHTATAPANAEKRYTVHRSDLPLSCPTPEMALWNSHPRVYLPIEDEPNGQAQCAYCGAVFVLAD
>CP023271.1|AVJ34475.1|3877606_3880951_+|alpha-1-2-mannosidase
MTLSDPRRALLPLALALACATTATPVLAQGLQTSFEPGEPAPARSDGTLSVDVGSGPGAPYAAKRNVGYSGLHALHYSTSGGQARRELFKTDLPIDTDTTLSWLVLPEIVGKDTVASTYVSLDLLLDDGSRVSASGARDQHGVALGARAQGDSKTLYPQQWARKAVRLGDMPALKGRRVLAIELEVASANGAPVSGWIDDVRLDVQPRQAPQRVSDWVLTTRGTQANGTFSRGNNFPATAVPHGFNFWTPVTDAGALNWLYRWNEQNDAKNRPQLQALALSHQPSPWMGDRQTFQVMPSATRGVPEADRSKRALSFDRTQENARPYRYDVRFDNGIAASIAPTDHAALFRFEFPEGGDANLLFDNVDARGGLTLDAATQTLTGYTDTRSGLSNGATRMYVVASFDRPWRSSGQIGTGRPTGYIKFDPGSERRVTMRIATSLISVEQARHNLALELAAADTLESVAGRAQDAWDARLARFDIGNAGDDQKTTLYSSLYRLYLYPNSGHENVGTAAAPEWRYASQASAADDNTDGSATRSFAPVRDGKVFVNNGFWDTFRTTWPAYALFTPDDAGQLVQGFIEQYRAGGWVARWSSPGYADLMVGTSSDVAFADAWLKGIGGFDPEEAYAAALKNATVVPPDRHVGRKGMDRSTFRGYASADVHEGMSWTMEGALNDFGIANMADALAKRATTPSARERYATEADYFRHRAGSYATLFDPAAGFFQGRRPDGSWRLQAKDYDPRVWGHDYTESNGWTFAFTAAHDGEGLAALYGGRDKLAAKLDTFFATPETADAAFAGSYGGTIHEMTEARDVRMGMYAHSNQPAHHIPWMYLYAGQPWKTQQHVREILSRLYVGSEIGQGYPGDEDNGETSAWYVLASLGLYPLRMGAPEYVIGSPAFQHARVELQGGAVLTVNAPQNSPENVYVQSLKINGKPWSKTWVPHEVIAKGATLDFVMGPQPSRWGSGVDDVPRSLTARGQRPQLLHDLLGNGAQAALADGRALPALIDDDANTAVPLGGGVTIALSHVGDGVPTMYTLTSGDGTIRGGEWTLEARAGNGRWVTLDQRRGEDFTSARQTRPFRIASPSRYAEYRLRLAAPGRLQLAEIELLAPSPLQ
>CP023271.1|AVJ34476.1|3880947_3881703_+|Basic-Secretory-protein
MTSMRLRLLPLALAALVFPSLSHAQPQTQAFDGQVSRDGVTLYYQDATGALAAPVRKRIIDTFYFAYLRERADFRPAAPNEVRIVIDPAYNGVAFVGDKDKASTITINPGWLVQHPDDIDLVTHEAMHIVQGYPSYGDKRVPGWLVEGIADYARDRYGMNNAAAGWALPDKLSQGQTVESGYRVTGAFLKWAEAAHPGLVLALDKDLRDGRYAPALWQKHTGKTLPALWAEYAKPRSPTPAPPPARRAKRR
>CP023271.1|AVJ34477.1|3882303_3884595_-|NADP-dependent-malic-enzyme
MSNEDFKQAALDYHRMSPPGKIKVSATKPMLTQRDLSLAYSPGVAYACEAIKADPQQASELTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFQKFAGIDVFDIEVDENDPDKLVDIIASLEPTFGGINLEDIKAPECFIVERKLRERMKIPVFHDDQHGTAIIVGAAVLNAMAITGKKIEEVKLATTGMGAAGISCVNMLVQLGLKPENILAFDREGVIHTGRTDLDPEKLRYARDTDKRTLAEIVDGADIFLGLSAPGILTAEMVKTMAPDPVIFALANPTPEIMPELVRAARPDAIIGTGRSDYPNQVNNVLCFPYLFRGALDVGATAINEEMKIACVRAIAALARRAATDMGSAYGGETPSFGREYLIPRPFDRRLLVELSAAVAQAAMDSGVAARPIADMEAYRQKLSQFVYRTSLMMKPVYDRARSDKQRVVYAEGEEEVVLQAVQNVVDDGLAHPILIGRPEVIESRIERLGLRLKIGENIEVTNINDDPRFNEYWQYYHGLTGRRGVTVAAAKNLMRSRPTLIAAVMVARGEADAMLTGIVGRFHKKLGYVRSVLPLESKVTSTSAMTGVINQQGVFFFVDTHVQEDPTAEQLCEATLQAAYRMKLFGVEPKVALLSHSNFGSHDSKDALKMRQVRELLLKRNPRLNVDGEMQGDTAWDEALRQKLLPGSTLQGRANLFVLPNLEAANIAYNLVRVFTDGVAIGPILMGVNKPVHILTTSATSRRILNMTAIAAVDAQIRKQIEAEKKA
>CP023271.1|AVJ34478.1|3884824_3886180_-|C4-dicarboxylate-transporter-DctA
MHIPTAAPVPSKPLPLYRQLYFQVIVAIVLGAVLGHYEPLIGEKMKPLGDAFINLVKMIIAPVIFLTIVTGIAGMTHLRTVGRVFAKAMAYFLFFSTLALIVGMIVAHVVQPGAGMNINPAELDQTAVHSYVEKSHDLTLVGFLMDIIPKTLISAFVDGNILQVLFVAVLFGIALASVDEKGKPIQNFLEALVAPVFKLVHILMKAAPIGAFGAIAFTIGKYGVGSLVNLAWLVGSFYLTAFLFVAVILGVVCRLCGFSVFKLARYLKAELLLVLGTSSSESALPSLMEKMERAGCSKSVVGLVVPTGYSFNLDGTNIYMTLAALFIAQATNTELTLGHQIALLLVAMLSSKGAAGVTGAGFITLAATLAVVPEVPVAGMALILGVDRFMSECRSLTNFIGNAVATVVVSRWEGALDRDRLKLALDGRESELPPPVDAVPLAMTEALPAKG
>CP023271.1|AVJ34479.1|3886511_3887681_+|porin
MRPIPTLLALSLAALPAFASAADFDNWPTKYAFGDGTELAATANIAYDYNDFSSASGIEDDDAVRRKEFGATLKKKGVYDAMVYYDFQADTWLDVFVRLESKAFFGRDVGRFRFGYMKTPVGLDANTSSRAGSFLETALPVQAFYAGRRTGVEWVLERPQYLLQAGAYGGKDLQGDNPGTTQAVRAVWTPVKAPGDVIHLGLAYSQENPRGYHDGRDVHHEASARLRARPEAGLTDIRLVDSGALVTADQIRRTGLEGIWIRGPFSLQAEALQATVTRNDGKPDYTGHGQYAMASWVLTGESRPYNAGAVANIKPAHDYGAVELVARYSRLDLDDGSILGGRQHDLTLGANWYLTSHFKFQANYVKVDASRRGVRSTPEIFELRAQMHF
>CP023271.1|AVJ34480.1|3887749_3890401_+|hybrid-sensor-histidine-kinase/response-regulator
MYWLSRHRLQLLTVLVMVAGTVLCAAAAGHYAWRRALGTESAQVQRQLQLYGQGLQQRIDRFGTLPQVMALDPDLLHALQVPPSPAERQRLNLKLQRANQVTRTSTLTLVGRDGVAVAASNWDQPTSNVGEDYSYRPYYQQALAHGRGRFYGIGMTTGVPGYFMSEAILDADSQRIGVIVIKIELSALEQEWLNSPDVVLTSDNHDVVFLANRDAWRYRLLRPLGTEERREMRAARQYADRSLQPLRVRTEDVLADGGRMVRLLDPALPQAMLWQTLALPDEDWSLHLLHDASAATSAGRGAAVAGAAAWLALGFLVLFVQQRRRLSKHRQRSRRELETLLKQHAQELRTAQDGLLEAATDADVGLSRSLEHLPQGVVVIDKEQRLVAWNSRYLELFRFPAGLVRVGRPIEELFRFNARRGLLGPGPIDEAIERRLTHLRSGRPHMRESEKDDGTVLEIRGNPLPDGGFVTSYADITSYKNAARELRSLADALEHRVAERTQDLDEARREAEQANRYKTRFVASAVHDLLQPLNAARMFVSVLRGKLTDPEQQQTSDHIDAALAAQDAILNSLLDISRLESGSLQVRVRAFALSPLLETLAREFGIAAQSRGLQLDWVDTRAVIVSDEALLRRILQNFLSNALRYTPRGRVLIGCRRAGDQLRIEVHDQGPGIPESLQGEIFEEFRRLNDGVEQERGAGLGLAIVERIGRLLGHRISLRSTLGKGSVFTVSVALGRADEVIAPPAAPVIATEPSDDSPLRQCRVWSIDDDPHVCAATRALLERWGCHVELADGPQGALEIASALNVPQLLLLDVRMGQWHGPDLYEALCTLWKARPPVILVTAERDDALKVHAAENGWGFLLKPVRPPALRALMTQLLLRHRG
>CP023271.1|AVJ34481.1|3890615_3891272_-|DNA-binding-response-regulator
MSEYTILIADDHPLLRSAVVQSLRQSLPLAQVREVASAEALATSLDAQPDVDLVLLDLTMPGAHGFSALLHVRGSHPDIPVVILSSNDHPRVIRRAQQFGAAGFIPKSAPAETIGEAVAAVLDGGLWFPAMAAERSEADALLASRLAQLTPQQFRVLLCLADGLLNKQIAYELGLAENTVKVHVTAILKKLECHSRTQAAVLVKALEPEGDARVGLDG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP023271_3	3.1\|374528\|27\|CP023271\|CRISPRCasFinder	374528-374554	27	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	919-945	4	0.852
CP023271_3	3.1\|374528\|27\|CP023271\|CRISPRCasFinder	374528-374554	27	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	505799-505825	4	0.852
CP023271_4	4.1\|374696\|27\|CP023271\|CRISPRCasFinder	374696-374722	27	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	1093999-1094025	4	0.852
CP023271_4	4.2\|374750\|27\|CP023271\|CRISPRCasFinder	374750-374776	27	CP000663	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence	123001-123027	4	0.852
CP023271_4	4.2\|374750\|27\|CP023271\|CRISPRCasFinder	374750-374776	27	NZ_CP031752	Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence	69169-69195	4	0.852
CP023271_3	3.1\|374528\|27\|CP023271\|CRISPRCasFinder	374528-374554	27	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	277143-277169	5	0.815
CP023271_3	3.1\|374528\|27\|CP023271\|CRISPRCasFinder	374528-374554	27	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	2035104-2035130	5	0.815
CP023271_3	3.1\|374528\|27\|CP023271\|CRISPRCasFinder	374528-374554	27	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	967152-967178	5	0.815
CP023271_3	3.1\|374528\|27\|CP023271\|CRISPRCasFinder	374528-374554	27	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	580397-580423	5	0.815
CP023271_4	4.1\|374696\|27\|CP023271\|CRISPRCasFinder	374696-374722	27	NZ_CP045288	Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence	112643-112669	5	0.815
CP023271_4	4.1\|374696\|27\|CP023271\|CRISPRCasFinder	374696-374722	27	NZ_AP014708	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_4p, complete sequence	12969-12995	5	0.815
CP023271_4	4.1\|374696\|27\|CP023271\|CRISPRCasFinder	374696-374722	27	CP041260	Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence	107086-107112	5	0.815
CP023271_4	4.2\|374750\|27\|CP023271\|CRISPRCasFinder	374750-374776	27	HQ632858	Tetraselmis viridis virus SI1 genomic sequence	9225-9251	5	0.815
CP023271_4	4.2\|374750\|27\|CP023271\|CRISPRCasFinder	374750-374776	27	NC_020840	Tetraselmis viridis virus S20 genomic sequence	21207-21233	5	0.815
CP023271_4	4.2\|374750\|27\|CP023271\|CRISPRCasFinder	374750-374776	27	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	376369-376395	5	0.815
CP023271_3	3.1\|374528\|27\|CP023271\|CRISPRCasFinder	374528-374554	27	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	978197-978223	6	0.778
CP023271_3	3.1\|374528\|27\|CP023271\|CRISPRCasFinder	374528-374554	27	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	111284-111310	6	0.778
CP023271_3	3.1\|374528\|27\|CP023271\|CRISPRCasFinder	374528-374554	27	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	123999-124025	6	0.778
CP023271_3	3.1\|374528\|27\|CP023271\|CRISPRCasFinder	374528-374554	27	NZ_LR594669	Variovorax sp. SRS16 plasmid 4	39411-39437	6	0.778
CP023271_3	3.1\|374528\|27\|CP023271\|CRISPRCasFinder	374528-374554	27	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	768370-768396	6	0.778
CP023271_4	4.2\|374750\|27\|CP023271\|CRISPRCasFinder	374750-374776	27	NC_022001	Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence	39149-39175	6	0.778
CP023271_4	4.2\|374750\|27\|CP023271\|CRISPRCasFinder	374750-374776	27	NC_010182	Bacillus mycoides KBAB4 plasmid pBWB403, complete sequence	31999-32025	6	0.778
CP023271_3	3.1\|374528\|27\|CP023271\|CRISPRCasFinder	374528-374554	27	MN585195	Pseudomonas phage AUS531phi, complete genome	8552-8578	7	0.741
CP023271_11	11.1\|2712037\|32\|CP023271\|CRISPRCasFinder	2712037-2712068	32	NZ_CP016080	Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence	196753-196784	7	0.781
CP023271_11	11.1\|2712037\|32\|CP023271\|CRISPRCasFinder	2712037-2712068	32	MT711890	Pseudomonas phage PlaquesPlease, complete genome	2699-2730	10	0.688

1. spacer 3.1|374528|27|CP023271|CRISPRCasFinder matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 4, identity: 0.852

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
gtccacgcggctgccgaccagccggat	Protospacer
*. ****************** * ***

2. spacer 3.1|374528|27|CP023271|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 4, identity: 0.852

gcgca-cgcggctgccgaccaggccgat	CRISPR spacer
-cgcgtcgctgctgccgaccaggccgaa	Protospacer
 ***. *** *****************

3. spacer 4.1|374696|27|CP023271|CRISPRCasFinder matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 4, identity: 0.852

cgtgcgcgcacgatcggcgaccttgac	CRISPR spacer
cgtgcgcgcacgaacggcgaacttctc	Protospacer
************* ****** ***  *

4. spacer 4.2|374750|27|CP023271|CRISPRCasFinder matches to CP000663 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence) position: , mismatch: 4, identity: 0.852

ggtttccacgccttcgccgacacggat	CRISPR spacer
gggttccacgcctttgccgacacggtc	Protospacer
** ***********.********** .

5. spacer 4.2|374750|27|CP023271|CRISPRCasFinder matches to NZ_CP031752 (Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence) position: , mismatch: 4, identity: 0.852

ggtttccacgccttcgccgacacggat	CRISPR spacer
gggttccacgcctttgccgacacggtc	Protospacer
** ***********.********** .

6. spacer 3.1|374528|27|CP023271|CRISPRCasFinder matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 5, identity: 0.815

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
gatggcgcggccgccgaccaggccgat	Protospacer
*   .******.***************

7. spacer 3.1|374528|27|CP023271|CRISPRCasFinder matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 5, identity: 0.815

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
ctgcacgcggccgccgaacaggccgag	Protospacer
 .*********.***** ********

8. spacer 3.1|374528|27|CP023271|CRISPRCasFinder matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
ctgcacgcggccgccgaacaggccgag	Protospacer
 .*********.***** ********

9. spacer 3.1|374528|27|CP023271|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 5, identity: 0.815

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
gcgcacgaggctgccgaccagcaggtt	Protospacer
******* *************   * *

10. spacer 4.1|374696|27|CP023271|CRISPRCasFinder matches to NZ_CP045288 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence) position: , mismatch: 5, identity: 0.815

cgtgcgcgcacgatcggcgaccttgac	CRISPR spacer
cgtgagcgcacgatcgccgacctcctc	Protospacer
**** *********** ******.  *

11. spacer 4.1|374696|27|CP023271|CRISPRCasFinder matches to NZ_AP014708 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_4p, complete sequence) position: , mismatch: 5, identity: 0.815

cgtgcgcgcacgatcggcgaccttgac	CRISPR spacer
ctggcgcgctcgatcggcgaccttcag	Protospacer
*  ****** ************** *

12. spacer 4.1|374696|27|CP023271|CRISPRCasFinder matches to CP041260 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence) position: , mismatch: 5, identity: 0.815

cgtgcgcgcacgatcggcgaccttgac	CRISPR spacer
cgtgagcgcacgatcgccgacctcctc	Protospacer
**** *********** ******.  *

13. spacer 4.2|374750|27|CP023271|CRISPRCasFinder matches to HQ632858 (Tetraselmis viridis virus SI1 genomic sequence) position: , mismatch: 5, identity: 0.815

ggtttccacgccttcgccgacacggat	CRISPR spacer
ggtttccacgccatcgccaacacccag	Protospacer
************ *****.****  *

14. spacer 4.2|374750|27|CP023271|CRISPRCasFinder matches to NC_020840 (Tetraselmis viridis virus S20 genomic sequence) position: , mismatch: 5, identity: 0.815

ggtttccacgccttcgccgacacggat	CRISPR spacer
ggtttccacgccatcgccaacacccag	Protospacer
************ *****.****  *

15. spacer 4.2|374750|27|CP023271|CRISPRCasFinder matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 5, identity: 0.815

ggtttccacgccttcgccgacacggat	CRISPR spacer
tttttccgcgccttcgccgacacctat	Protospacer
  *****.***************  **

16. spacer 3.1|374528|27|CP023271|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 6, identity: 0.778

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
gcgcaggcggctgccgacccggcgctc	Protospacer
***** ************* ***   .

17. spacer 3.1|374528|27|CP023271|CRISPRCasFinder matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.778

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
cggcacgccgctgccgaccacgccgcg	Protospacer
  ****** *********** ****

18. spacer 3.1|374528|27|CP023271|CRISPRCasFinder matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.778

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
cggcacgccgctgccgaccacgccgcg	Protospacer
  ****** *********** ****

19. spacer 3.1|374528|27|CP023271|CRISPRCasFinder matches to NZ_LR594669 (Variovorax sp. SRS16 plasmid 4) position: , mismatch: 6, identity: 0.778

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
cagcacgaggctgccgaccagggcgcg	Protospacer
  ***** ************** **

20. spacer 3.1|374528|27|CP023271|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.778

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
gcgcacgcggccgacgaccaggctccc	Protospacer
***********.* *********.  .

21. spacer 4.2|374750|27|CP023271|CRISPRCasFinder matches to NC_022001 (Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence) position: , mismatch: 6, identity: 0.778

ggtttccacgccttcgccgacacggat	CRISPR spacer
ggtttccccgccttcgccgacgaagca	Protospacer
******* *************. .*

22. spacer 4.2|374750|27|CP023271|CRISPRCasFinder matches to NC_010182 (Bacillus mycoides KBAB4 plasmid pBWB403, complete sequence) position: , mismatch: 6, identity: 0.778

ggtttccacgccttcgccgacacggat	CRISPR spacer
aagttccacaccttcgccgacaccgac	Protospacer
.. ******.************* **.

23. spacer 3.1|374528|27|CP023271|CRISPRCasFinder matches to MN585195 (Pseudomonas phage AUS531phi, complete genome) position: , mismatch: 7, identity: 0.741

gcgcacgcggctgccgaccaggccgat	CRISPR spacer
ctcgtcgcggttgccgaccaggccgaa	Protospacer
 .   *****.***************

24. spacer 11.1|2712037|32|CP023271|CRISPRCasFinder matches to NZ_CP016080 (Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence) position: , mismatch: 7, identity: 0.781

cgccaacgcacaagcccatcgcg---cctgcccca	CRISPR spacer
ggccaacgcaccagcccatcgagcaacttgcc---	Protospacer
 ********** ********* *   *.****

25. spacer 11.1|2712037|32|CP023271|CRISPRCasFinder matches to MT711890 (Pseudomonas phage PlaquesPlease, complete genome) position: , mismatch: 10, identity: 0.688

cgccaacgcacaagcccatcgcgcctgcccca	CRISPR spacer
cgccaacgcacaggcccattgcgagggtgatt	Protospacer
************.******.***   *.  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

613550 : 623982

Enterobacteria_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ31780.1\|613550_614606_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.3e-80	46.5
AVJ31781.1\|614620_615508_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	6.3e-97	58.5
AVJ31782.1\|615504_616062_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.4e-46	51.1
AVJ31783.1\|616058_616964_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	9.8e-29	37.8
AVJ31784.1\|617135_618449_+	hypothetical protein	NA	NA	NA	NA
AVJ31785.1\|618500_619904_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	3.6e-46	29.1
AVJ31786.1\|619918_621265_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	1.5e-33	26.9
AVJ31787.1\|621360_623982_-	helicase	A8C6A2	Antheraea_pernyi_nuclear_polyhedrosis_virus	1.9e-48	30.7

DBSCAN-SWA_2

993821 : 1064967

Escherichia_phage(16.67%)

tail,plate,integrase,protease

attL 1057179:1057195|attR 1069488:1069504

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ32090.1\|993821_995111_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.9e-134	58.8
AVJ32091.1\|995253_997707_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	3.0e-213	50.8
AVJ32092.1\|997925_998198_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	7.7e-22	61.8
AVJ32093.1\|998920_1000876_+	peptidylprolyl isomerase	NA	NA	NA	NA
AVJ32094.1\|1001395_1002598_-	lytic transglycosylase	NA	NA	NA	NA
AVJ32095.1\|1002594_1003359_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
AVJ32096.1\|1003370_1004015_+	hypothetical protein	NA	NA	NA	NA
AVJ32097.1\|1004027_1004480_+	ribonuclease HI	J9Q745	Salmonella_phage	6.6e-42	52.1
AVJ32098.1\|1004484_1005213_+	DNA polymerase III subunit epsilon	A2I2Z6	Vibrio_virus	2.6e-08	30.0
AVJ32099.1\|1005292_1005997_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
AVJ32100.1\|1006477_1006882_+	hypothetical protein	A0A1C9C5K8	Heterosigma_akashiwo_virus	2.2e-17	35.9
AVJ32101.1\|1007000_1008047_-	ADP-heptose--LPS heptosyltransferase	NA	NA	NA	NA
AVJ32102.1\|1008067_1008817_+	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA
AVJ32103.1\|1008816_1009584_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
AVJ32104.1\|1009580_1009970_+	DUF4440 domain-containing protein	NA	NA	NA	NA
AVJ32105.1\|1010442_1010760_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
AVJ32106.1\|1011127_1020391_+	transporter	NA	NA	NA	NA
AVJ32107.1\|1020446_1020890_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AVJ32108.1\|1021013_1021808_+	PEP phosphonomutase	NA	NA	NA	NA
AVJ32109.1\|1022500_1024597_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	2.2e-47	41.4
AVJ32110.1\|1024603_1024924_+	nucleoid-associated protein, YbaB/EbfC family	NA	NA	NA	NA
AVJ32111.1\|1025035_1025635_+	recombination protein RecR	NA	NA	NA	NA
AVJ32112.1\|1025701_1026061_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
AVJ32113.1\|1026182_1026710_-	hypothetical protein	NA	NA	NA	NA
AVJ32114.1\|1026706_1028656_-	hypothetical protein	NA	NA	NA	NA
AVJ32115.1\|1028648_1029593_-	DUF58 domain-containing protein	NA	NA	NA	NA
AVJ32116.1\|1029595_1030549_-	ATPase	NA	NA	NA	NA
AVJ32117.1\|1030593_1032435_+	hypothetical protein	NA	NA	NA	NA
AVJ32118.1\|1032457_1033030_-	septum formation inhibitor Maf	NA	NA	NA	NA
AVJ32119.1\|1033144_1033654_+	hypothetical protein	NA	NA	NA	NA
AVJ32120.1\|1033761_1033956_+	50S ribosomal protein L32	NA	NA	NA	NA
AVJ32121.1\|1034047_1035025_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
AVJ32122.1\|1035098_1035881_+	serine/threonine protein phosphatase	NA	NA	NA	NA
AVJ32123.1\|1036047_1036992_+	[acyl-carrier-protein] S-malonyltransferase	NA	NA	NA	NA
AVJ32124.1\|1037074_1037818_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	1.2e-11	31.5
AVJ32125.1\|1037970_1038210_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	2.9e-09	43.2
AVJ32126.1\|1038355_1039618_+	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA
AVJ32127.1\|1039710_1041075_+	aminodeoxychorismate synthase, component I	NA	NA	NA	NA
AVJ32128.1\|1041283_1042345_+	aminodeoxychorismate lyase	NA	NA	NA	NA
AVJ32129.1\|1042341_1043007_+	dTMP kinase	W8D0J5	Erwinia_phage	2.1e-20	34.9
AVJ32130.1\|1043003_1043960_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
AVJ32131.1\|1043956_1044310_+	pilus assembly protein PilZ	NA	NA	NA	NA
AVJ32132.1\|1044553_1044982_-	hypothetical protein	NA	NA	NA	NA
AVJ32133.1\|1045542_1045923_+	tautomerase family protein	NA	NA	NA	NA
AVJ32134.1\|1046005_1047079_-\|tail	phage tail protein	D5LGY1	Escherichia_phage	6.9e-98	53.4
AVJ32135.1\|1047069_1047285_-\|tail	phage tail protein	A2I2Y3	Vibrio_virus	3.2e-07	40.6
AVJ32136.1\|1047268_1047736_-\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	5.2e-18	36.1
AVJ32137.1\|1047738_1050180_-\|tail	phage tail tape measure protein	K4ICR4	Acidithiobacillus_phage	3.5e-12	26.9
AVJ32138.1\|1050300_1050591_-\|tail	phage tail assembly protein	A0A1W6JT47	Escherichia_phage	2.9e-19	60.3
AVJ32139.1\|1050674_1051178_-\|tail	phage major tail tube protein	A0A193GYM4	Enterobacter_phage	7.6e-39	48.8
AVJ32140.1\|1051180_1052383_-\|tail	phage tail protein	A0A088FVH5	Escherichia_phage	1.6e-127	54.2
AVJ32141.1\|1052489_1053149_-	hypothetical protein	NA	NA	NA	NA
AVJ32142.1\|1053150_1055352_-\|tail	phage tail protein	V9IQX0	Stenotrophomonas_phage	1.6e-112	39.5
AVJ32143.1\|1055359_1056139_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	9.9e-46	51.7
AVJ32144.1\|1056131_1057028_-\|plate	baseplate assembly protein	V5YTH6	Pseudomonas_phage	9.2e-80	56.1
AVJ32145.1\|1057030_1057369_-\|plate	phage baseplate protein	A0A193GYY8	Enterobacter_phage	7.8e-32	61.3
1057179:1057195	attL	NA	NA	NA	NA
AVJ32146.1\|1057421_1058012_-\|plate	baseplate assembly protein	A0A193GYL5	Enterobacter_phage	2.7e-27	39.8
AVJ32147.1\|1058008_1058563_-	hypothetical protein	NA	NA	NA	NA
AVJ32148.1\|1058935_1059313_-	hypothetical protein	NA	NA	NA	NA
AVJ32149.1\|1059309_1059795_-	glycoside hydrolase	D5LH07	Escherichia_phage	5.0e-40	54.4
AVJ32150.1\|1059791_1060142_-	hypothetical protein	NA	NA	NA	NA
AVJ32151.1\|1060138_1060588_-	hypothetical protein	NA	NA	NA	NA
AVJ32152.1\|1060928_1061312_-	hypothetical protein	NA	NA	NA	NA
AVJ32153.1\|1061479_1062016_-	hypothetical protein	NA	NA	NA	NA
AVJ32154.1\|1062057_1062285_-	hypothetical protein	NA	NA	NA	NA
AVJ32155.1\|1062367_1062631_-	hypothetical protein	NA	NA	NA	NA
AVJ32156.1\|1062630_1064967_-\|integrase	integrase	V5YUR8	Pseudomonas_phage	1.5e-134	41.7
1069488:1069504	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP023271

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection