CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024073	Helicobacter pylori strain 7.13_R1c chromosome, complete genome	0 crisprs	cas2,cas3,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

488979 : 527504

Helicobacter_phage(40.0%)

integrase,transposase,protease

attL 496017:496036|attR 527340:527359

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG89679.1\|488979_490128_-\|transposase	transposase	G9CU70	Helicobacter_phage	2.4e-213	97.6
AVG89680.1\|490096_490564_-\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	3.0e-82	98.7
AVG89681.1\|493326_494394_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.3e-08	26.7
AVG89682.1\|494710_495514_-	hypothetical protein	NA	NA	NA	NA
AVG89683.1\|495485_495737_-	hypothetical protein	NA	NA	NA	NA
AVG89684.1\|495874_496555_-\|protease	CAAX protease	NA	NA	NA	NA
496017:496036	attL	NA	NA	NA	NA
AVG89685.1\|496775_497789_+	hypothetical protein	NA	NA	NA	NA
AVG89686.1\|497793_499071_-	hypothetical protein	NA	NA	NA	NA
AVG89687.1\|499067_500324_-	conjugal transfer protein TrbL	NA	NA	NA	NA
AVG89688.1\|500320_501754_-	hypothetical protein	NA	NA	NA	NA
AVG89689.1\|501763_503791_-	hypothetical protein	NA	NA	NA	NA
AVG89690.1\|503790_504843_-	DUF1738 domain-containing protein	NA	NA	NA	NA
AVG89691.1\|505644_506313_+	ParA family protein	A0A222YXS3	Escherichia_phage	9.1e-24	33.5
AVG89692.1\|506359_506737_+	hypothetical protein	NA	NA	NA	NA
AVG89693.1\|506714_507380_+	hypothetical protein	NA	NA	NA	NA
AVG89694.1\|507453_508257_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
AVG89695.1\|508226_508712_-	hypothetical protein	NA	NA	NA	NA
AVG89696.1\|508751_510812_-	type IA DNA topoisomerase	A0A1V0SB35	Catovirus	1.7e-57	28.6
AVG89697.1\|510832_512962_-	conjugal transfer protein TraG	NA	NA	NA	NA
AVG89698.1\|512958_513477_-	replication regulatory RepB family protein	NA	NA	NA	NA
AVG89699.1\|513473_514418_-	conjugal transfer protein TrbB	NA	NA	NA	NA
AVG89700.1\|514422_514698_-	hypothetical protein	NA	NA	NA	NA
AVG89701.1\|514714_515677_-	hypothetical protein	NA	NA	NA	NA
AVG89702.1\|515689_517930_-	RGS domain-containing GTPase-activating protein	NA	NA	NA	NA
AVG89703.1\|517913_519122_-	hypothetical protein	NA	NA	NA	NA
AVG89704.1\|519118_520774_-	type VI secretion protein	NA	NA	NA	NA
AVG89705.1\|520770_521907_-	hypothetical protein	NA	NA	NA	NA
AVG89706.1\|521899_522040_-	type IV secretion system protein VirB7	NA	NA	NA	NA
AVG89707.1\|522036_524613_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
AVG89708.1\|524612_524849_-	hypothetical protein	NA	NA	NA	NA
AVG89709.1\|524860_525124_-	competence protein ComB	NA	NA	NA	NA
AVG89710.1\|525135_525420_-	hypothetical protein	NA	NA	NA	NA
AVG89711.1\|525397_525775_-	hypothetical protein	NA	NA	NA	NA
AVG89712.1\|525767_525998_-	hypothetical protein	NA	NA	NA	NA
AVG89713.1\|526000_526825_-\|integrase	integrase	NA	NA	NA	NA
AVG89714.1\|526838_527504_+\|protease	CAAX protease	NA	NA	NA	NA
527340:527359	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage