CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP019644	Vitreoscilla sp. C1 chromosome, complete genome	2 crisprs	DEDDh,cas3,csa3,WYL	0	4	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP019644_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP019644_1

1385567-1385957

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCGGCCTGTATGGCCGTGAAC	CRISPRCasFinder
TTTCTAAGCGGCCTGTATGGCCGTGAACA	CRT
TTTCTAAGCGGCCTGTATGGCCGTGAACA	PILER-CR

6 spacers

The CRISPR arrays of CP019644_1

>merge|CP019644|1|1385567-1385957|CRISPRCasFinder,CRT,PILER-CR
CTTCTAAGCGGCCTGTATGGCCGTGAACAACATCTGGGCAAAAGTAAAAACTGGCGAAACTTTCTAAGCGGCCTGTATGGCCGTGAACACAAAAGAATTGGAAACTTTGGGCATGACTGCTTTCTAAGCGGCCTGTATGGCCGTGAACACGGAAACCATTTCTAAAGCGGGTGTCATGTCGTTTCTAAGCGGCCTGTATGGCCGTGAACCCTTGGTTTCGATTGCGCCAACTCCAATCACCTTTCTAAGCGGCCTGTATGGCCGTGAACACACATAGAGTCTGGCAAGATTTACAGTGTTGATTTCTAAGCGGCCTGTATGGCCGTGAACAATTGCGCCAAGACACGGCGATTAGAGCGCATTTTCTAAGCGGCCTGTATGGCCGTGAACA

>CP019644|1|1|1385567-1385956|CRISPRCasFinder
CTTCTAAGCGGCCTGTATGGCCGTGAAC	AACATCTGGGCAAAAGTAAAAACTGGCGAAAC
TTTCTAAGCGGCCTGTATGGCCGTGAAC	ACAAAAGAATTGGAAACTTTGGGCATGACTGC
TTTCTAAGCGGCCTGTATGGCCGTGAAC	ACGGAAACCATTTCTAAAGCGGGTGTCATGTCG
TTTCTAAGCGGCCTGTATGGCCGTGAAC	CCTTGGTTTCGATTGCGCCAACTCCAATCACC
TTTCTAAGCGGCCTGTATGGCCGTGAAC	ACACATAGAGTCTGGCAAGATTTACAGTGTTGA
TTTCTAAGCGGCCTGTATGGCCGTGAAC	AATTGCGCCAAGACACGGCGATTAGAGCGCAT
TTTCTAAGCGGCCTGTATGGCCGTGAAC

>CP019644|1|1|1385567-1385957|CRT
CTTCTAAGCGGCCTGTATGGCCGTGAACA	ACATCTGGGCAAAAGTAAAAACTGGCGAAAC
TTTCTAAGCGGCCTGTATGGCCGTGAACA	CAAAAGAATTGGAAACTTTGGGCATGACTGC
TTTCTAAGCGGCCTGTATGGCCGTGAACA	CGGAAACCATTTCTAAAGCGGGTGTCATGTCG
TTTCTAAGCGGCCTGTATGGCCGTGAACC	CTTGGTTTCGATTGCGCCAACTCCAATCACC
TTTCTAAGCGGCCTGTATGGCCGTGAACA	CACATAGAGTCTGGCAAGATTTACAGTGTTGA
TTTCTAAGCGGCCTGTATGGCCGTGAACA	ATTGCGCCAAGACACGGCGATTAGAGCGCAT
TTTCTAAGCGGCCTGTATGGCCGTGAACA

>CP019644|1|1|1385568-1385957|PILER-CR
TTCTAAGCGGCCTGTATGGCCGTGAACAA	CATCTGGGCAAAAGTAAAAACTGGCGAAACT
TTCTAAGCGGCCTGTATGGCCGTGAACAC	AAAAGAATTGGAAACTTTGGGCATGACTGCT
TTCTAAGCGGCCTGTATGGCCGTGAACAC	GGAAACCATTTCTAAAGCGGGTGTCATGTCGT
TTCTAAGCGGCCTGTATGGCCGTGAACCC	TTGGTTTCGATTGCGCCAACTCCAATCACCT
TTCTAAGCGGCCTGTATGGCCGTGAACAC	ACATAGAGTCTGGCAAGATTTACAGTGTTGAT
TTCTAAGCGGCCTGTATGGCCGTGAACAA	TTGCGCCAAGACACGGCGATTAGAGCGCATT
TTCTAAGCGGCCTGTATGGCCGTGAACA

Protein	Signature genes	Signature genes Name	Protein_function
CP019644.1\|AUZ05289.1\|1379826_1379919_-\|hypothetical-protein	unknown	unknown	unknown
CP019644.1\|AUZ05300.1\|1391131_1391620_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376207
CP019644.1\|AUZ05304.1\|1394842_1395877_-\|hypothetical-protein	unknown	unknown	unknown
CP019644.1\|AUZ05291.1\|1380567_1380933_-\|putative-type-1-restriction-endonuclease-HsdS	unknown	unknown	gnl\|CDD\|341194
CP019644.1\|AUZ05299.1\|1388417_1391132_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376242
CP019644.1\|AUZ05292.1\|1381087_1381237_-\|hypothetical-protein	unknown	unknown	unknown
CP019644.1\|AUZ05293.1\|1381212_1381344_-\|hypothetical-protein	unknown	unknown	unknown
CP019644.1\|AUZ05296.1\|1384618_1384834_-\|cold-shock-protein-CspA	unknown	unknown	gnl\|CDD\|224197
CP019644.1\|AUZ05306.1\|1396535_1397075_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283910
CP019644.1\|AUZ05294.1\|1383152_1383983_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226144
CP019644.1\|AUZ05303.1\|1394006_1394576_-\|hypothetical-protein	unknown	unknown	unknown
CP019644.1\|AUZ05305.1\|1395877_1396543_-\|putative-transcriptional-repressor	unknown	unknown	gnl\|CDD\|237361
CP019644.1\|AUZ05301.1\|1391718_1392084_-\|hypothetical-protein	unknown	unknown	unknown
CP019644.1\|AUZ05297.1\|1386130_1386559_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376215
CP019644.1\|AUZ05290.1\|1380052_1380571_-\|putative-type-1-restriction-endonuclease-HsdS	unknown	unknown	gnl\|CDD\|341157
CP019644.1\|AUZ05295.1\|1384303_1384465_-\|hypothetical-protein	unknown	unknown	unknown
CP019644.1\|AUZ05298.1\|1386540_1388406_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368653
CP019644.1\|AUZ05288.1\|1379476_1379830_-\|putative-PD-(D/E)XK-nuclease-superfamily-protein	unknown	unknown	gnl\|CDD\|379536
CP019644.1\|AUZ05287.1\|1378809_1379358_-\|hypothetical-protein	unknown	unknown	unknown
CP019644.1\|AUZ05302.1\|1392420_1394007_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP019644.1\|AUZ05300.1\|1391131_1391620_-\|hypothetical-protein	gnl\|CDD\|376207	pfam18788, DarA_N, Defence against restriction A N-terminal. This is an alpha and beta fold domain. It has a conserved aspartate, and an asparagine residue followed by a basic residue in a Nx+ motif. This predicted structural domain is mainly found in polyvalent proteins of phages/prophages. The P1 hdf protein, a solo version of the domain, and the Phage P1 DarA protein that contains this domain are components of the phage P1 head. The domain might be involved in a counter-restriction activity.	6.54785e-27
CP019644.1\|AUZ05291.1\|1380567_1380933_-\|putative-type-1-restriction-endonuclease-HsdS	gnl\|CDD\|341194	cd17513, RMtype1_S_AveSPN6ORF1907P_TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Archaeoglobus veneficus SNP6 S subunit (S.AveSPN6ORF1907P) TRD2-CR2 and Bacillus subtilis JRS2 S subunit (S.BsuJRS7ORF3308P) TRD1-CR1. The recognition sequences of Archaeoglobus veneficus SNP6 S subunit (S.AveSPN6ORF1907P) and Bacillus subtilis JRS2 S subunit (S.BsuJRS7ORF3308P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	1.27263e-18
CP019644.1\|AUZ05297.1\|1386130_1386559_-\|hypothetical-protein	gnl\|CDD\|376215	pfam18796, LPD1, Large polyvalent protein-associated domain 1. This is an alpha helical domain with a conserved ExxARxxE motif that is found in polyvalent proteins of both conjugative elements and phages and prophages.	9.25963e-29
CP019644.1\|AUZ05290.1\|1380052_1380571_-\|putative-type-1-restriction-endonuclease-HsdS	gnl\|CDD\|341157	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.Ara36733I TRD1-CR1 AND S.Ara36733I TRD2-CR2. Actinomyces radicidentis S subunit (S.Ara36733I) recognizes 5'... CGAGNNNNNCTG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	4.15942e-38
CP019644.1\|AUZ05299.1\|1388417_1391132_-\|hypothetical-protein	gnl\|CDD\|376242	pfam18823, InPase, Inorganic Pyrophosphatase. A type I Inorganic Pyrophosphatase family domain that is found in polyvalent proteins.	3.81463e-39
CP019644.1\|AUZ05298.1\|1386540_1388406_-\|hypothetical-protein	gnl\|CDD\|368653	pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP). This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.	0.00873943
CP019644.1\|AUZ05296.1\|1384618_1384834_-\|cold-shock-protein-CspA	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	5.29615e-35
CP019644.1\|AUZ05306.1\|1396535_1397075_-\|hypothetical-protein	gnl\|CDD\|283910	pfam06356, DUF1064, Protein of unknown function (DUF1064). This family consists of several phage and bacterial proteins of unknown function.	3.33839e-20
CP019644.1\|AUZ05294.1\|1383152_1383983_-\|hypothetical-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	8.294e-15
CP019644.1\|AUZ05288.1\|1379476_1379830_-\|putative-PD-(D/E)XK-nuclease-superfamily-protein	gnl\|CDD\|379536	pfam14281, PDDEXK_4, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	5.94438e-16
CP019644.1\|AUZ05305.1\|1395877_1396543_-\|putative-transcriptional-repressor	gnl\|CDD\|237361	PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional.	1.4519e-05

>CP019644.1|AUZ05296.1|1384618_1384834_-|cold-shock-protein-CspA
MSTQQTGTVKWFNDSKGFGFITPDNGGAELFAHFSAITSEGFRTLAENQRVSFNSESGPKGPQATNIQAIA
>CP019644.1|AUZ05295.1|1384303_1384465_-|hypothetical-protein
MLSIKSFTLYAQQNLGYDSHDLVTLNDKFKKPKIQSEYLEWQKSLKVLNHSKR
>CP019644.1|AUZ05294.1|1383152_1383983_-|hypothetical-protein
MNALTFNQVSLNPVSQPDNQIWITATELANALGYKKADAVTQILIAMKMNFKQYVNDPQMSVIRKTGNIMMPVRIFSLRGCHLVAMFAKTEIAKQFRKWVLDLIETEAQKFTGRSTTTDERTGLRDAVNAVVSKKGLLYPDAYKLVHQRFNVSSIDELTLEQVGEATEYLHRLLLTTEKPSGYVLEEHQVKNLVNAAQSMDWIFCWFNHYKMALSVINPKMVSSVSEHFKVVWIHTQNFGRKHDMVALNHTTMRDYPWAADYESQKDWRKAVGIYK
>CP019644.1|AUZ05293.1|1381212_1381344_-|hypothetical-protein
MNVPKLRFKGFQDAWEVHKFSENLLFIIQILTQERYWLSKVVS
>CP019644.1|AUZ05292.1|1381087_1381237_-|hypothetical-protein
MAEQGSIMNIHYGDIHTKFSALFDVAKEDVPFLSCKVDTQKLLQTNFYK
>CP019644.1|AUZ05291.1|1380567_1380933_-|putative-type-1-restriction-endonuclease-HsdS
MQTFKVREQIQKLATGISVLGISKGNLGNVELNIPCLQEQTKIASFLSAVDDKIAALRQEHDLWQQYKQGMMQQLFSQSFAFRTIMVRIFLIGKPQYFLKNLLFIRQILTRELCYLNRVKL
>CP019644.1|AUZ05290.1|1380052_1380571_-|putative-type-1-restriction-endonuclease-HsdS
MNIHYGDIHTKFSSLFDATKEKVPFLSAEVEISKLDEERFLRVGDLVIADASEDYKDIGKTIEIVNLGNQKLVAGLHTYIARPKQDFALGFHGYLMQTLAVRAQIQKLATGISVLGISKTNLGKVEIKIPTLAEQTKIAACLSSIDAKIDALAQQLEQARVWKQGLLQQMFV
>CP019644.1|AUZ05289.1|1379826_1379919_-|hypothetical-protein
MDSIDVAVDELSRLQSVLEQAKSLHTSKKK
>CP019644.1|AUZ05288.1|1379476_1379830_-|putative-PD-(D/E)XK-nuclease-superfamily-protein
MTFFDTALRKHYENPTTELLAFFLNSENEHGLNGVFYQGLLAALRECGVAQSDTEAWGDVQNVHTEVVTSKGRIDLLIETDQAVLAIECKIGHHQNNPFTDYERYVRQHYPGKNRCF
>CP019644.1|AUZ05287.1|1378809_1379358_-|hypothetical-protein
MDFVCAGIFNALEQLGVDVMNEQQVDFVVEHLGDIKKMVTLRDDFYRHVRDHITEALENQLKGYEVHYRVHTWPNGPALRFANNHCPTWTEVVVNLHIDEKPLQYSLQIRIDKQTDALVKLACKELKKLSWIVNDGDNTWAEINGRYWVCAWEGGDFDLTEVCNEVVTLMRILMKVEAARAA
>CP019644.1|AUZ05297.1|1386130_1386559_-|hypothetical-protein
MAYTLLVRHWTLGSESDVDISADGVLTFDGLPGQSEFYKNAIELDMGKEGKYWSKDFEMAARAFSAYLQDRLEEQGRKNDYLAYSTQGGNGRVGERAYPQGEERQRINDAFDGLFKVIREKKVLETATANKALMDSLFDCVH
>CP019644.1|AUZ05298.1|1386540_1388406_-|hypothetical-protein
MELNTMERLRLNGELKTAIEARNAEADVLKKLDWIKVVQDLRLQLGLAVTATESEPAAEPEPLVEPEPAAEPKESDQMQTEAESESNEAVSQQPEAPMTAEDTDNQLPPSEDEVGLDEDDLAAAANIDDDLSDTTTAENYRWKDTAYIAGARKELAQKSILQAKRDGQRLNSNDIDWDELAKDPRLSESLIVKDNVFGRVDWAALADKGMPSQVAYFISRVYANMDKMPLHPLSQHSQKNYVQAISNLRERLEVCLTFKDVAAVMNEIIVAMPSIKLMRMLYEDELTAGITFEENIDNNFKQISVRGREKLLSYDSQVWAELGERFFSWTSKSVNTTLRNAQRDKKYADWSNWCADFKTGTDGEGNAAPEGASKPKKPSFQLESAEDIERIGGQEVDLTSSQQLQDMFGFKGIQSGNWVLKDKSAAEFHMKNAAAAMLDMSDVLGIEPQYLGLKGNLALAFGARGKKGALAHYESSSKVINITKMKGGGSLGHEYFHALDNLIKDLSTQTVGSASFMGTSNPDDLPDVDLAQVFKALRVAMMKTDGVLKFEYPKAFIPDVHQPSADTKAFLESMAGNFLRGSRLPLNAAMSDLKKWIASHANYATTPPKPKSFARMWLTPC
>CP019644.1|AUZ05299.1|1388417_1391132_-|hypothetical-protein
MGNVTRNENGRVTSVYGLPVHIESVAGSYRIKSGRPPILVSDDYGELVGTKGADQDPIDCYVGPYPETNTVYVINQDKQGVGFDEHKVMFGFLDQDHAINVYSLGCFGKKPMSVVACTVGQFKWWLEYGNHKEAMSAQSLPFDSYSETAMQQIPEYDWDQPTAAASRVLYDMRVMDSAYGQLIEANNHRDLLDQIEHQDGGELGVLDALVIPNNQIQKKAAQIGMALNRAAGDDIKVVEEGGVEVTEPYRQGGTTNIAMLFSMSDGQTVSVFFHNPDVTPNKLSPDDSMVSWKWMLNKKDITIVVAKENGQDQSIAAIAKKIMALVEANATKFARANAKAAENEAEIKATEERIEQKKNVLQSLLDQIAALENGSSVVVVEPKPQQVPNGVEPSEMNIDLLNTDIHAFMNAGEADLYDAVQRYMRENFQGRYVKTVIGDVLFTSVATREMRLGTDKDRFRAAIIPFVPNTLKNGDYLGREGVKKDRKDSFVAFHRFKGEAVIGSYTVTHIVTVAERENAKFEFLAYHNKLKGAEPKLDTGSNNSVLDALGNNLVGRSLLGQTPMNSNVAAFDSAVNDSGWNIEIVSVIDSNGEHVANLEDVVNSQPEPALEPEPVLNSQLEPVQFVGNELGDFDLSTDEGKKAMRAAARTHLESLRGKWVDCPAMPRDENGDVRKVEIRNRSVKEFIRYTGNPVKILLAAKIEEIIETARNAVVEPNFKLAAKPGTFEYYKLENTIAVDGMLHQVVVMIERDIQGYLHYDLMLPNKVKATLDSAALQPEPFPTTKAGVSSLINTATFDDVSQQNESSLLNLFVKVQNENGEWVELEDTFEPEFEPEETDESGHDADRAFLKEVIEGLVDVMGEGFHERMTAVALRYNGGDNTEMQAMVEQAVNAYTAKLDELSQ
>CP019644.1|AUZ05300.1|1391131_1391620_-|hypothetical-protein
MADTNHLFTWDELKGNDTTAPKKLVTAFKRAGAEIAASWVAEKTKRENSITYREIGFTLADSQTIVLRVKQTGDIYQVRMNGKILPMKEQDDIKKALAEIVNDLDANATKFQKALARKKATPPKGSGNTRVTRKAALESQEAELDGLIAEAQATLAALQGGV
>CP019644.1|AUZ05301.1|1391718_1392084_-|hypothetical-protein
MEKAIILGFIAVGLVGCATVEQSKQVSSTEHAIQQETQVIYFTGPYDLTIELKSNDGFKTATMMDNSGKNHLLKIAVSGSGMRMVGNDGVSIHFKNFNGLNEGVVELVKDKPIPIKEFKAK
>CP019644.1|AUZ05302.1|1392420_1394007_-|hypothetical-protein
MAIQSILSLPIYHDFLKEYQFNLEGFLFDLCGLTLTRDQQVLSKLAINPTSRISVVSGTGTGKTAWLGGAALHSMWCFPVVEYDGKIEVGSNTYVGAPVIQQVADGVWKEMNDNFQRIKMLDGMGWLTGRTHPKAERWYMDGYKDQWFIAKIALGNADSVAIAGKHRYYQTIFIDEAAGVADSHYDVINGTQTQEGNRTFLFSQGVKTTGYFYDTHHTLSHINTPVDEGGWINLCFNSENAPHVSRKWLKAREVESGGRDSVEYRIRVLGQFAEDEERTLIHRRMLDEAMANTTPLIAEDDEDWGWFLLCDVAAGEYRDYSVATLAKVKGVGENRVIDFIDIPIFSNGIDVKQFKGRIAEEAAKYSNIRLVIDSGGNGLQLCKDLEDEGFDVVRVSWGKPNFKTEYKNRFINQRAQCSVHTRDAIRQGRIRFLWNLPKKTKEMFIYQATHIPYNFTDSGVLRYQIMGKEKMAAQGIKSPDIFDTVCFANLEGVHYNVSDRADGGVGAQEKKKSALELAKAKMAAITIK
>CP019644.1|AUZ05303.1|1394006_1394576_-|hypothetical-protein
MAKKERKLYVEFSATLFLDILTDLTMPEPDTKRFKTLSGVLNGNRDKYPTMAAFLGWLRRDTSGELEKMYHEVMEANIQLMHDERFRVAYDIEHDIMMTERNGTFTPEWNKLFVQRGKVIIDALEWSLTRLAPAKYGNNLKVETTIEASTETLKLLAQDGAARRAAAFEAAERLAKELYEQQSGKSQDA
>CP019644.1|AUZ05304.1|1394842_1395877_-|hypothetical-protein
MYIPPLVTARINAHMKELSIGDVIDLAAMPTLNNEAGVFHSVKQVVAETNVPIEAWTVQELYAGLLHYHTHAINGGQALVLDADTGADLSVYVLEDQDYPLHKIGRQVVADDLKYEFELDSESDSPDLLKMLPLTGASAVAIERCVLNGQVKGVTDKREAWRIACAAAQIHARDFEWSWLDEQHVSIDAYINENIQRILSMSVSDYAALMMAFEQGLLALDHIVRLRVFDDGFALMPTKGVRCTHLTDFALMPLSLTARLRFGRDMKNQLAMMQLELPNMPLPMLKQLSLSEFEDLVTSKAWEKHQENDVDSARFEVLIKAISNAANAICKTLASGFKALASNR
>CP019644.1|AUZ05305.1|1395877_1396543_-|putative-transcriptional-repressor
MANAAPHTVTPSKRKETENMRLSRLAGERLQKTRTALGIKIYQVVAAFPGRIQKSHLSEWEHGEKPIPMWALRELAMFYGVSTDYLLCATDSSSELKHSLEINEMLHTVGQHYWSLMASKISGSIGQHAAKLHCYEEAVNSGVVLVEQIDRMIELNRKYFESEVRNGARVESALGHAKAAFMQAQIAGRRHRLVELTLPTEIEDVMQARLDLEPHPSVLEK
>CP019644.1|AUZ05306.1|1396535_1397075_-|hypothetical-protein
MSNTAIGKQERISTVEFNRRVAAGQLVQDAKGKWREADAKTGKPKATSKYGNKITKVDGRKFDSALEAQHYQLLKQQKEAGIIADFECQVRYPIADKVLNEDGSVYSHKIDYVADFAITHLDGRIELVDVKGMVLGLYKLKKALMWHRHRIKITEIFSSHHKKAKKAGKRPKTGESKHG

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Crispr_ID: CP019644_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP019644_2

2063365-2063445

Orphan

Consensus_repeat	Method
TTACAGGACGCTTAAAGCGTCCTGTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP019644_2

>merge|CP019644|2|2063365-2063445|CRISPRCasFinder
TTACAGGACGCTTAAAGCGTCCTGTAAAAAATCTAATACGCTTATTTAAAACATTACAGGACGCTTAGAGCGTCCTGTAAA

>CP019644|2|2|2063365-2063445|CRISPRCasFinder
TTACAGGACGCTTAAAGCGTCCTGTAAA	AAATCTAATACGCTTATTTAAAACA
TTACAGGACGCTTAGAGCGTCCTGTAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP019644.1\|AUZ05974.1\|2061012_2061162_+\|hypothetical-protein	unknown	unknown	unknown
CP019644.1\|AUZ05980.1\|2066856_2067240_-\|hypothetical-protein	unknown	unknown	unknown
CP019644.1\|AUZ05967.1\|2048183_2049368_+\|leucine/isoleucine/valine-binding-protein	unknown	unknown	gnl\|CDD\|380565
CP019644.1\|AUZ05983.1\|2069855_2071142_-\|subunit-alpha-of-sulfite-reductase	unknown	unknown	gnl\|CDD\|273882
CP019644.1\|AUZ05970.1\|2052970_2056009_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|223354
CP019644.1\|AUZ05979.1\|2066408_2066834_-\|hypothetical-protein	unknown	unknown	unknown
CP019644.1\|AUZ05971.1\|2056021_2057281_-\|class-3-aminotransferase	unknown	unknown	gnl\|CDD\|223238
CP019644.1\|AUZ05985.1\|2071747_2073058_-\|large-subunit-of-sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|225448
CP019644.1\|AUZ05986.1\|2073134_2074055_-\|small-subunit-of-sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235375
CP019644.1\|AUZ05981.1\|2067327_2067576_+\|hypothetical-protein	unknown	unknown	unknown
CP019644.1\|AUZ05978.1\|2066160_2066337_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378715
CP019644.1\|AUZ05969.1\|2051531_2052938_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319958
CP019644.1\|AUZ05977.1\|2063463_2064714_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|234819
CP019644.1\|AUZ05976.1\|2062060_2063356_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
CP019644.1\|AUZ05973.1\|2059509_2060955_+\|Na+/H+-antiporter-NhaC	unknown	unknown	gnl\|CDD\|188097
CP019644.1\|AUZ05975.1\|2061834_2062026_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224966
CP019644.1\|AUZ05984.1\|2071147_2071669_-\|subunit-alpha-of-sulfite-reductase	unknown	unknown	gnl\|CDD\|182862
CP019644.1\|AUZ05968.1\|2049467_2050331_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
CP019644.1\|AUZ05972.1\|2057880_2059398_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143448
CP019644.1\|AUZ05982.1\|2067575_2067983_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP019644.1\|AUZ05967.1\|2048183_2049368_+\|leucine/isoleucine/valine-binding-protein	gnl\|CDD\|380565	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.	3.69448e-119
CP019644.1\|AUZ05970.1\|2052970_2056009_-\|FAD-binding-protein	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	3.56874e-86
CP019644.1\|AUZ05984.1\|2071147_2071669_-\|subunit-alpha-of-sulfite-reductase	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	1.36769e-57
CP019644.1\|AUZ05971.1\|2056021_2057281_-\|class-3-aminotransferase	gnl\|CDD\|223238	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism].	1.67448e-143
CP019644.1\|AUZ05985.1\|2071747_2073058_-\|large-subunit-of-sulfate-adenylyltransferase	gnl\|CDD\|225448	COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism].	0
CP019644.1\|AUZ05977.1\|2063463_2064714_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	4.16244e-164
CP019644.1\|AUZ05983.1\|2069855_2071142_-\|subunit-alpha-of-sulfite-reductase	gnl\|CDD\|273882	TIGR01931, Sulfite_reductase_flavoprotein_alpha-component, sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.	0
CP019644.1\|AUZ05978.1\|2066160_2066337_+\|hypothetical-protein	gnl\|CDD\|378715	pfam11776, RcnB, Nickel/cobalt transporter regulator. RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.	2.59266e-10
CP019644.1\|AUZ05969.1\|2051531_2052938_-\|hypothetical-protein	gnl\|CDD\|319958	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	0
CP019644.1\|AUZ05976.1\|2062060_2063356_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	6.81636e-61
CP019644.1\|AUZ05973.1\|2059509_2060955_+\|Na+/H+-antiporter-NhaC	gnl\|CDD\|188097	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. Intriguingly, archaeal homolog ArcD (just outside boundaries of family) has been identified as an arginine/ornithine antiporter. [Transport and binding proteins, Cations and iron carrying compounds].	4.38785e-123
CP019644.1\|AUZ05975.1\|2061834_2062026_+\|hypothetical-protein	gnl\|CDD\|224966	COG2055, COG2055, Malate/L-lactate dehydrogenases [Energy production and conversion].	8.75528e-07
CP019644.1\|AUZ05968.1\|2049467_2050331_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	8.77882e-35
CP019644.1\|AUZ05972.1\|2057880_2059398_+\|aldehyde-dehydrogenase	gnl\|CDD\|143448	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.	0
CP019644.1\|AUZ05986.1\|2073134_2074055_-\|small-subunit-of-sulfate-adenylyltransferase	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0

>CP019644.1|AUZ05976.1|2062060_2063356_+|FAD-dependent-oxidoreductase
MDLKHKCLWPDLVDHIPTYAALKEDVRTDVCVIGAGFTGLNAAIRLRELGKDVRVLEATHLAYGGSGRNVGLVNAGSWIKPDEFEKILGEKAGQKFNKAFGEVPYLVFEMIEKYQLDAQHTHTGTLHMAHNAKGSADIADRYHQWTRRGANMRLLTGAECQEYCGTDKIPSALLDLRCGTVNPFAYAKSLSEAAHKLGAHLHEHTKVVKIERQGSQWLVQTSNGHSVLADKIIIASNAYTEGDWTNITSALYPGYYYQVASKPLTGAAADSILPHKQGSWDTRTVLSSIRRDKDGRLILGSLGRGDNKPEWFLKKWADRVQQFYYPQLGKNVEWEYVWSGRIGFTDDHIPRLFEPELGVVAATGYNGRGVTTGTLMGRLMAEYVIEGNPDILPLPFKGVSECECKNSNLKSLFYETSFSAYHLGQCLNLVN
>CP019644.1|AUZ05975.1|2061834_2062026_+|hypothetical-protein
MLGDDWTAHQQRSEDFLNQFNASGARLPSQRRFKARAQNQQQGYIELDDNLYADLQNLLTLAN
>CP019644.1|AUZ05974.1|2061012_2061162_+|hypothetical-protein
MHITPTQLTQLSHDILAAYGFTPEHQKALPILWSLPNKINAIHMALGVY
>CP019644.1|AUZ05973.1|2059509_2060955_+|Na+/H+-antiporter-NhaC
MIKKYRNLERYPFWFDLAPLLITTAIMAVQFFIFKDFTPHIPLIIGICITGLFMALKGQTWSHMEKQMFTVMKVGLPAVLILMCVGMLISVWIAAGTVPTIVNAGLAVLSPSIFLPATCILACLVSLATGTSWGTVGTVGLAMMGIGDAMGIPLYWTAGAVVSGSFFGDKMSPLSDTTNLTPAVADVNLWDHIRGMLPCTVPALVISVLIYAYIGQGYSEANAAITTTDTIKNAMNANFQLGWLTLIPAAVVIYMGYRKYSAMGTICLGVALGALIAIFVQDVPVKDIFNILQNGYKAQTGISTVDSLLSKGGVMSMTWTVTLTMFSLAFVGALETYGTFDAILGKLENIIKSRMSLLSATYGSGLAVSLILGEVYTSLVLPGRLLQGKYKELGYDRTTLSRTLEDCGTLVSPLIPWNMGGGFVTATLGVPTIVYAPFAIFCWLSPLFGILYALTGWFVPRTEPVSKEQLQTARHAESLIS
>CP019644.1|AUZ05972.1|2057880_2059398_+|aldehyde-dehydrogenase
MTQTTLNTVDITLFSALNVDKNIYQGGDQIVRSPIDGSTIGLVNYLPAVDVAAVIDQSQAAFEQWRKIPAPRRGELVRILGEVLREHKEDLAQVVTLEAGKITQEALGEVQEMIDICDFAVGLSRQLYGLTIASERPGHHMRETWHPVGPVGIISAFNFPVAVWSWNAALALIAGNSIVWKPSEKTPLTAIACQALFEKAVARFGSDAPANLSTLIVGDRDAGEALVNDERVPLISATGSTRMGREVGKAVAARFGRSILELGGNNAMILTPSADLELATRAILFSAVGTAGQRCTTLRRLIVHKDVKAQVLEKLKKSYQTVSIGNPTENNLVGPLVDEASFNAMQDALAQAKEQGGEVFGGERQLADVYPDAYYVAPAIAEMPAQTDVVKHETFAPILYVLEYENFEEALRLNNEVPQGLSSCVFTTDVREAEIFQSAVGSDCGIANVNIGTSGAEIGGAFGGEKETGGGRESGSDAWKGYMRRQTNTINYSRELPLAQGIKFD
>CP019644.1|AUZ05971.1|2056021_2057281_-|class-3-aminotransferase
MQTAICSALSIVHPIELIKGQNAHVWDVSGKQYIDFVGGIGVLNLGHCHPRIVAAIQNQASQLIHSAFNAVPHQPYMQLAQALSNFIPSKTPFDVLLANSGAEATENALKIARLKTGRTGVIAFDGGFHGRTLAAVNLNGKVAAYKTKLGSLPGPVYHIPYPSEDNGITAAQAKIALERVLSVEVDINNIAAIIVEPIIGEGGFQLLNPEFAVYLRRFCDENGIALIFDEVQSGFGRSGKRFAFEHLNVAPDLLLMGKSIAGGVPLGAVAGDVKWMGDLPKGSLGGTYSGNPLACAAALATIDIMSQEDFFAQVAHNYSEVVSAYHQKWQEQGLPVGRLTGVGSMRGIELVDAEGQPDTDLLAKILPAAREQGLLLMPSGKYRNVIRLLPPLTIETDVLVEGLELLGRLLAEQTVATLA
>CP019644.1|AUZ05970.1|2052970_2056009_-|FAD-binding-protein
MIPIHVAAKPLTEQFLSVLKQQGFDGDIETSDAQRTVYATDNSVYERTPQAIVLPKTTQDLQAITRLLAQPHFQSVTITARGGGTGTNGQSLTDGIVVDVSRHMNQILNIDVAKRQVTVQAGVVKDQLNAALKPYGLFFAPELSTSNRATVGGMINTDASGQGSCTYGKTRDHVLGLKTVLLGGEVLESKALSVSSWQQDIVQLPESLQNKFKSLYELVHQNQQAIQDAFPELNRCLTGYDLPHVLERDQFNINSVLCGAEGSLGLIAEATLNVLPIPTQRILVNISYANFQDALNDANALMAKQPLSIETVDSKVLGLAKADIVWNQVAEFFPEQAGKAAVMGINLVEFAGDDAPQLQQTVQKFLQHLQDDSSVERLNVTQAQGAVAIERVYSMRKRSVGLLGNVQGERRPQPFVEDTAVPPQNLAAYIAEFRQVLDEMQVEYGMFGHVDAGVLHVRPALDMKNSSDAAKIKPITDAVVALVHKHGGVLWGEHGKGLRSEYAPTFFGAVYPLIQQVKALFDPHNQFNPGKIATPTTQPHARLTAVDEVTFRGELDQKIATPVWNSFHNAVHCNGNGACYNYDTHDAMCPSWKALRDRVHSPKGRASLMKTWLREQGDVLAQENHIQNQSTFQSVMHQIALRFQDASKRSDDFSHEVYDAMKGCLSCKSCAGQCPVKVNVPDFKARFLQLYHHQNPRPLRDFAIGQLETGLPILTRFPKAYNMVMDNTWVQRLQEKVLKLVDAPRMSDEAVLDWAHFNVTVLDEKSLAQFDAHRFNSSNSVLLLQDAFTRYFDTPVWMAWLRLLQRLSIKVFVLPFAANGKPLQVHGFLGQFERLVRKNTAFLERAAQTGLPLVGLDPAMTLVYRQEYPKALNMRELPFEVLLPQEWLATRLDELTLRSPHPNEVFTLAGHCTEKTNAPNATRQWQQIFTHFGLTLNTVTTGCCGMSGTYGHEAEHQDTSKKIYSQSWQPMLAQALDTKRVLATGYSCRSQVKRLSHTRLQHPVEALLKHLS
>CP019644.1|AUZ05969.1|2051531_2052938_-|hypothetical-protein
MTQLTAQRSDTISPDQIRARFSQAMSDMYQQEVPLYGDLIQLVADVNADYLTKNPQEELILANSQELSRLNLERHGAIRVGKPEELFNIRRVFAVMGMYPVAYYDLASAGVPVHSTAFRAVTAEAMTESPFRVFCSLLRLELIDDEDLRERAQAILDKRNIFTEEALRLVDVAEQNGGLTEEEANVFVNEALETFRWHSDATVTADEYDALSSQHRLIADVVAFKGPHINHLTPRTLDIDEVQRLMPERGIDAKLSVEGPPRRHCPILLRQTSFKALNEDIRFTDQAEGEMGKHSARFGEIEQRGVALTAKGRAMYDQLLEEVRVKIGGAPTAANLDTYYTELAQIFSVLPDTHAQLHDEGLAFYHYRASAKGIELAGQLDASLSTAQLLEQGYLSIEPMTYEDFLPVSAAGIFQSNLGDAARGSAYGSMSNQDLFERDLGQKVLSEMDLYAQDSAQSLQDALKVLGL
>CP019644.1|AUZ05968.1|2049467_2050331_+|LysR-family-transcriptional-regulator
MSNYESQHPSLTALRVFTSVGRFHNITRAANELGISKGAVSQHLHKLEQTLDVKLFERHGKELSLTEQGRFYLADLRRAFDLIDQSTQRLTINQREWIISCTPTFAECWLIPRLSSLQQLLQGPIRIIASPQRANFIEDGVDIAIRQDNPPFSVAHSSYLLYHRDWVLVCHADLYDVYHQNIAEEKYLNLTFIGDSHHFETHIPDLSMKIQNMRSIRMSTAALSMHTCLNKLGMCLIDRFFIREHLETGRLKILDSFPDFQQDAFYLIHDKHKPLPEELIAWFKQQN
>CP019644.1|AUZ05967.1|2048183_2049368_+|leucine/isoleucine/valine-binding-protein
MHIIKSGLYLGSLSIMALALAACGQNTEKAAASADAKPASATSGEGITVLIGTVNPLTGPLTHWGVDSANGIKLAIEDANNKKLVWDGKPVTFELISEDDMADPRVATQMADRLVDKKVSAVVGHFTSSTAIPASMTYDTAKIPHITYSVTGAKYTQQGFEHVYRVIASDAQQAVGMAKFAVEKLGIKTFSLVHDKGAYGEGLATDFGKEAEKLGAKMLSTEFTTTTSAEFSSVATAIKTKQPDFVLYGGMDAQAGPLAKELRKQGVTAQFMGSDGIKSEEMLKMIGPIDGVYASTAGATTDKMPGYSEFATRYQAAYNQPIATFAPYSYDATHVIIAAMDQAKSADPAKYAPLIRKTQMQGITGAIAFDEKGDLKDSAQTVYIAKGDKWEVAM
>CP019644.1|AUZ05977.1|2063463_2064714_-|FAD-dependent-oxidoreductase
MNIVVVGAGIAGVCTAWYLTKAGHQVTVVEALSEVAQETSFANAGMLTQGYAAPWAAPNVVKQSWKMLREPSKPLCIKPDGSLEQVKWLWKMYGYCNAEDFSRNRQHMYQLGKRNLQLLHQLKNELALDYAGRAQGTLEVFRASGDYQACVDDTDFLNQQGIAHVLLEPQNCNEFEPAIATDQFSGALRLNEDETGDCHLFAQQLKQYCEQFGVKFLFEHAVSAILNDGQSVTGVVAAGKTLLADHVVLTTGCQTKRLLQSIGLDAMIYPVKGYSITVPIKDESRAPQSTILDYQYKVAITRMGDHIRVGGIAEISGWDKIKISHNEETLKMVLNDLFPGSADLEETQFWMGMRPMTPDGPPLIGRMPLAGLSVNAGHGTFGWTFGLAAAKLLQESLSVDYTVQKQSPFYPSRYQA
>CP019644.1|AUZ05978.1|2066160_2066337_+|hypothetical-protein
MEAWAGIKQKYRGKAYWADSKEQRHLPKAGKNQRWVKVDQNYILINTLSNVILSVFLR
>CP019644.1|AUZ05979.1|2066408_2066834_-|hypothetical-protein
MKQILAAGVLMVATAFAQAQNYNNGEDLSRFVTSEAFGKMSAAELKPIQKKVQAHLDKCVAATVKHLQQDSKSHGVTAAMVQKHYQVWVPYYKTGCEIYAAEHEEEAQSRANLQMRCEVFSQSSFYSNLLAYQHKPLESCQ
>CP019644.1|AUZ05980.1|2066856_2067240_-|hypothetical-protein
MKASLLVVYLFHNEVKVLASDQKAWNLALAFAHPRSLVGNVPILEQGLRLLLQDYWHEQTYLQRYVGVQKIVWVLPPQIGGLSFLELRVLKELSHVLLGGRMYAYVIESEPLNYAYWQAKIPTLKRL
>CP019644.1|AUZ05981.1|2067327_2067576_+|hypothetical-protein
MATTPQLQAIEQQLACPQGEQGLDIADMMHATNINMTLNGWQCMRLAPNGRVLELGHGNAAHVTPLLKNAATSITQAWKFPN
>CP019644.1|AUZ05982.1|2067575_2067983_+|hypothetical-protein
MCEQAHLLNQEMVNHYRATFWHYDGQYIPSFIQAFDGILSVNTIYFWDQPQFLLLQLKQQLSALGRLALVYMDPEFLQTLPFVGHQFKPYAPNKLEALLTQTGFQNITTKSFHDEVTRKDQSVATRLFHVTTAQR
>CP019644.1|AUZ05983.1|2069855_2071142_-|subunit-alpha-of-sulfite-reductase
MGATRLAPRVDCDLDFQAAADAWRNDVAQTVVALAQQTSVSAAVASSAAVAVAVTEQHYTKENPFTATLSVSQKITANEANKDVRHIEIDLGDSGIQYTAGDALGVWFGNDEALVDEVLRLSVLEGSENVVLSNGESVSIREALLHQDELTQNTPQFIKGFAQISQNADLLALIEDNKALQAAVDCTPIVGILNDYPHPLTAEQLHGLLRPLTPRMYSIASAQAEVDGEVHLTVGRVAYEHHGNAYTGGASGFLSDRLQEGGDVKVFVEPNKNFRLPENGDTPIIMIGAGTGVAPFRAFMQQRDNNGDTGANWLVFGNQKFTDDFLYQAEWLQYRKSGLLTAVSTAWSRQGSEKVYVQHKLRENAAAVWQWLQQGAHVYVCGDALRMAKDVEQALLDIISEQGQMSLDDADEYLSQLREDKRYQRDVY
>CP019644.1|AUZ05984.1|2071147_2071669_-|subunit-alpha-of-sulfite-reductase
MQTVLPLTPEWQQQLEQFSPTQLAWLSGYCWAKSQDSNAVAAATGVAPNAIATAVEATAAAPARKITVLSVSQTGNARRVAEQLLVQLQEAQLDAQIIAAGDYKAKNIASEDIVLMVTSTQGEGEAPEEGVSLHKFLHGKKAPQLNGVSFAVLGLGDSSYPNFAKQAKILMLC
>CP019644.1|AUZ05985.1|2071747_2073058_-|large-subunit-of-sulfate-adenylyltransferase
MTTPVSVLRFITAGSVDDGKSTLIGRLLYDSQALLADQVAQLNKRSAGGTLDLASLTDGLEAEREQGITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADAAIVLVDATRLDFEQSPLQLLSQTKRHSTLLKQIGCRHIIVAVNKLDLLDYSQEKFKQIVTAYRQLADTIGLKDVYYVPISALNGDNIVNSSEHMPWFEGAPLLTLLEGLPAAADEQISDMPEEAYLPVQRVARQDGSAADDFRGYQGRIEAGVFSVGQAVRVEPSARTSTISAIYGVQGEVARASRGDVVTITLTDDVDISRGDVLVASDSIVVPTKFLSATLSWLDERPLNTARKYWLKHGTQTVYAKVKAIDYVWDMQTLGQTTEANDLKMNDIGHVRLSLMKPIAALEYANNRAAGAFILIDDATNHTVAAGMIVATQDQDDWAI
>CP019644.1|AUZ05986.1|2073134_2074055_-|small-subunit-of-sulfate-adenylyltransferase
MSDAISNKHLDWLEAESIYIIREVIAESKNPALLFSGGKDSVVLLALACKAFTYGERALQLPFKLLHVDTGHNYQEVIDFRDQTVARLGVELVVGHVEDSIAKGTVVLRSELDSRNAAQAVTLLEAIEEHEFDALMGGARRDEEKARAKERIFSFRDEFGQWDPKAQRPELWSLYNTRLFKGENMRVFPISNWTEMDIWQYIEREGLALPPIYFAHEREVVEKNGLLVPVTRLTPKKDGDVSEIRSVRFRTVGDISCTCPVASTAANPVDIIAETAQTTISERSATRMDDQVSESAMEERKKAGYF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP019644_2	2.1\|2063393\|25\|CP019644\|CRISPRCasFinder	2063393-2063417	25	NZ_CP014325	Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence	67399-67423	4	0.84
CP019644_1	1.10\|1385777\|31\|CP019644\|CRT	1385777-1385807	31	MH593834	Siphoviridae sp. isolate ctbe1, complete genome	44126-44156	7	0.774
CP019644_1	1.16\|1385778\|31\|CP019644\|PILER-CR	1385778-1385808	31	MH593834	Siphoviridae sp. isolate ctbe1, complete genome	44126-44156	7	0.774
CP019644_1	1.4\|1385776\|32\|CP019644\|CRISPRCasFinder	1385776-1385807	32	MH593834	Siphoviridae sp. isolate ctbe1, complete genome	44126-44157	8	0.75

1. spacer 2.1|2063393|25|CP019644|CRISPRCasFinder matches to NZ_CP014325 (Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence) position: , mismatch: 4, identity: 0.84

aaatctaatacgcttatttaaaaca	CRISPR spacer
aaatcaaatacgcatatttaaaagt	Protospacer
***** ******* *********

2. spacer 1.10|1385777|31|CP019644|CRT matches to MH593834 (Siphoviridae sp. isolate ctbe1, complete genome) position: , mismatch: 7, identity: 0.774

cttggtttcgattgcgccaactccaatcacc	CRISPR spacer
tttggtttcgattgcaccaacttcaacgata	Protospacer
.**************.******.***. *.

3. spacer 1.16|1385778|31|CP019644|PILER-CR matches to MH593834 (Siphoviridae sp. isolate ctbe1, complete genome) position: , mismatch: 7, identity: 0.774

cttggtttcgattgcgccaactccaatcacc	CRISPR spacer
tttggtttcgattgcaccaacttcaacgata	Protospacer
.**************.******.***. *.

4. spacer 1.4|1385776|32|CP019644|CRISPRCasFinder matches to MH593834 (Siphoviridae sp. isolate ctbe1, complete genome) position: , mismatch: 8, identity: 0.75

ccttggtttcgattgcgccaactccaatcacc	CRISPR spacer
gtttggtttcgattgcaccaacttcaacgata	Protospacer
 .**************.******.***. *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

191246 : 236106

Mycobacterium_phage(33.33%)

integrase,tRNA,transposase

attL 198921:198980|attR 236077:237459

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUZ04054.1\|191246_192500_-\|transposase	mutator family transposase	A0A2P1JQX9	Mycobacterium_phage	6.8e-97	48.3
AUZ04055.1\|192562_193150_-	nuclease-related domain-containing protein	A0A2R2ZH57	Clostridioides_phage	7.3e-17	37.5
AUZ04056.1\|195599_196364_-	hypothetical protein	NA	NA	NA	NA
AUZ04057.1\|196492_197650_-	hypothetical protein	NA	NA	NA	NA
AUZ04058.1\|197794_198376_-	hypothetical protein	A0A2H4J5G6	uncultured_Caudovirales_phage	6.5e-10	40.7
AUZ04059.1\|198372_198912_-	hypothetical protein	NA	NA	NA	NA
198921:198980	attL	NA	NA	NA	NA
AUZ04060.1\|198950_200204_-\|transposase	mutator family transposase	A0A2P1JQX9	Mycobacterium_phage	6.8e-97	48.3
AUZ04061.1\|200294_200783_-	hypothetical protein	NA	NA	NA	NA
AUZ04062.1\|202625_202829_-	hypothetical protein	NA	NA	NA	NA
AUZ04063.1\|202855_204415_-	hypothetical protein	A0A1B0VP75	Pseudomonas_phage	2.3e-49	33.9
AUZ04064.1\|204411_204765_-	hypothetical protein	NA	NA	NA	NA
AUZ04065.1\|204779_205028_-	hypothetical protein	NA	NA	NA	NA
AUZ04066.1\|205093_205444_-	putative bacteriophage T7 DNA primase/helicase Gp4	Q7M2A8	Enterobacteria_phage	1.5e-17	51.8
AUZ04067.1\|205492_205747_-	hypothetical protein	NA	NA	NA	NA
AUZ04068.1\|205845_205962_-	hypothetical protein	NA	NA	NA	NA
AUZ04069.1\|205958_206195_-	hypothetical protein	NA	NA	NA	NA
AUZ04070.1\|206649_207327_-	KilA-N domain-containing protein	K7PH30	Enterobacteria_phage	7.3e-21	44.3
AUZ04071.1\|207326_207626_-	hypothetical protein	NA	NA	NA	NA
AUZ04072.1\|207741_207879_-	hypothetical protein	NA	NA	NA	NA
AUZ04073.1\|208052_208631_-	hypothetical protein	NA	NA	NA	NA
AUZ04074.1\|208878_209772_-	hypothetical protein	NA	NA	NA	NA
AUZ04075.1\|210044_210485_-\|integrase	phage integrase	A0A1B0VMI6	Pseudomonas_phage	2.6e-35	51.8
AUZ04076.1\|211970_212111_+	hypothetical protein	NA	NA	NA	NA
AUZ04077.1\|212262_212463_+	hypothetical protein	NA	NA	NA	NA
AUZ04078.1\|212752_213154_-	hypothetical protein	NA	NA	NA	NA
AUZ04079.1\|214577_214961_+	putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3	NA	NA	NA	NA
AUZ04080.1\|215137_215299_+	hypothetical protein	NA	NA	NA	NA
AUZ04081.1\|215334_215664_+	hypothetical protein	A0A2I7SAW6	Vibrio_phage	1.8e-20	51.6
AUZ04082.1\|215672_215900_+	hypothetical protein	NA	NA	NA	NA
AUZ04083.1\|215909_217310_-	hypothetical protein	NA	NA	NA	NA
AUZ04084.1\|217323_218247_-	homoserine kinase	NA	NA	NA	NA
AUZ04085.1\|218452_218929_+	putative LysM domain/BON superfamily protein	A0A0K2SUI2	Clostridium_phage	2.1e-06	53.1
AUZ04086.1\|219183_219288_+	ribosomal protein S20	NA	NA	NA	NA
AUZ04087.1\|219564_219918_+	hypothetical protein	NA	NA	NA	NA
AUZ04088.1\|219917_220469_+	phospholipase A1	NA	NA	NA	NA
AUZ04089.1\|220902_221757_+\|transposase	mutator family transposase	A0A2P1JQX9	Mycobacterium_phage	4.3e-42	45.0
AUZ04090.1\|221708_222155_+\|transposase	mutator family transposase	A0A2P1JQX9	Mycobacterium_phage	2.4e-28	49.6
AUZ04091.1\|223445_223889_+	dipeptide transporter	NA	NA	NA	NA
AUZ04092.1\|223876_224140_+	dipeptide transporter	NA	NA	NA	NA
AUZ04093.1\|224139_225141_+	oligopeptide/dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-16	29.2
AUZ04094.1\|225137_225461_+	putative ABC transporter	NA	NA	NA	NA
AUZ04095.1\|225555_226113_+	oligopeptide/dipeptide ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-08	34.1
AUZ04096.1\|226211_227135_-	lipoprotein NlpA	NA	NA	NA	NA
AUZ04097.1\|227226_228549_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
AUZ04098.1\|228917_229517_-	outer membrane protein OmpA	NA	NA	NA	NA
AUZ04099.1\|229705_230611_+\|tRNA	subunit alpha of glycyl-tRNA synthetase	NA	NA	NA	NA
AUZ04100.1\|230686_232750_+\|tRNA	subunit beta of glycyl-tRNA synthetase	NA	NA	NA	NA
AUZ04101.1\|232829_233231_-	hypothetical protein	NA	NA	NA	NA
AUZ04102.1\|233218_234628_-	hypothetical protein	NA	NA	NA	NA
AUZ04103.1\|234852_236106_+\|transposase	mutator family transposase	A0A2P1JQX9	Mycobacterium_phage	6.8e-97	48.3
236077:237459	attR	NA	NA	NA	NA

DBSCAN-SWA_2

325571 : 333250

Methanothermobacter_phage(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUZ04204.1\|325571_326759_-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase	Q9HH70	Methanothermobacter_phage	6.1e-47	35.2
AUZ04205.1\|326767_327136_-	hypothetical protein	NA	NA	NA	NA
AUZ04206.1\|327255_327696_+	hypothetical protein	NA	NA	NA	NA
AUZ04207.1\|327700_328540_-	family 8 glycosyl transferase	B6S2F0	Adoxophyes_orana_nucleopolyhedrovirus	7.7e-12	29.6
AUZ04208.1\|328668_329556_-	tyrosine recombinase XerC/XerD	A0A0K2CP59	Brevibacillus_phage	7.4e-21	25.5
AUZ04209.1\|329533_330007_-	methylated-DNA--protein-cysteine methyltransferase	A0A2P1EL10	Moumouvirus	3.1e-18	32.9
AUZ04210.1\|330173_330617_+\|tRNA	YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein	NA	NA	NA	NA
AUZ04211.1\|330600_331197_+	hypothetical protein	NA	NA	NA	NA
AUZ04212.1\|331257_331794_-	hypothetical protein	NA	NA	NA	NA
AUZ04213.1\|332492_332696_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	3.0e-23	80.3
AUZ04214.1\|332768_332861_+	hypothetical protein	NA	NA	NA	NA
AUZ04215.1\|332926_333250_+\|protease	ATP-dependent Clp protease adapter protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.0e-12	45.7

DBSCAN-SWA_3

2400908 : 2408154

Klosneuvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUZ06285.1\|2400908_2401793_-	patatin-like phospholipase	A0A1V0SKV5	Klosneuvirus	1.1e-08	26.7
AUZ06286.1\|2401801_2402617_-	hypothetical protein	NA	NA	NA	NA
AUZ06287.1\|2402606_2403347_-	alpha/beta hydrolase family protein	NA	NA	NA	NA
AUZ06288.1\|2403435_2404053_+	putative phosphoribosyl transferase	S6B1L6	Thermus_phage	3.0e-05	42.9
AUZ06289.1\|2404417_2405173_+	rare lipoprotein A	A0A0F6SJ38	Sinorhizobium_phage	9.0e-20	61.6
AUZ06290.1\|2405395_2406232_-	TPR repeat-containing protein	A0A1V0SEC5	Indivirus	5.3e-21	33.3
AUZ06291.1\|2406219_2406654_-	family 2 glycosyl transferase	A0A0N9QAD0	Chrysochromulina_ericina_virus	3.7e-26	51.4
AUZ06292.1\|2406693_2408154_-	hypothetical protein	A0A075BSJ0	Microcystis_phage	2.3e-48	32.6

DBSCAN-SWA_4

2432236 : 2470355

Burkholderia_phage(23.81%)

tail,integrase,head,capsid,portal,protease,terminase,transposase

attL 2430921:2430938|attR 2460204:2460221

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2430921:2430938	attL	NA	NA	NA	NA
AUZ06307.1\|2432236_2433490_-\|transposase	mutator family transposase	A0A2P1JQX9	Mycobacterium_phage	6.8e-97	48.3
AUZ06308.1\|2433580_2433712_-	putative acyl-CoA N-acyltransferase	NA	NA	NA	NA
AUZ06309.1\|2433883_2434309_+	hypothetical protein	NA	NA	NA	NA
AUZ06310.1\|2434359_2435151_+	peptidase M23	I3PV24	Clostridium_phage	9.5e-12	35.4
AUZ06311.1\|2435496_2437785_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
AUZ06312.1\|2437858_2438539_+	PKHD-type hydroxylase	A0A127KM56	Cyanophage	2.9e-17	32.2
AUZ06313.1\|2438535_2439663_+	FMN-dependent dehydrogenase	NA	NA	NA	NA
AUZ06314.1\|2439736_2440225_+	GAF domain-containing protein	NA	NA	NA	NA
AUZ06315.1\|2440586_2441873_+\|integrase	putative integrase	NA	NA	NA	NA
AUZ06316.1\|2441861_2442059_-	hypothetical protein	NA	NA	NA	NA
AUZ06317.1\|2442070_2442526_-	hypothetical protein	NA	NA	NA	NA
AUZ06318.1\|2442652_2443066_-	hypothetical protein	NA	NA	NA	NA
AUZ06319.1\|2443077_2443968_-	hypothetical protein	NA	NA	NA	NA
AUZ06320.1\|2444032_2444380_-	hypothetical protein	NA	NA	NA	NA
AUZ06321.1\|2444502_2444922_-	hypothetical protein	NA	NA	NA	NA
AUZ06322.1\|2444928_2445507_-	hypothetical protein	NA	NA	NA	NA
AUZ06323.1\|2445464_2445683_-	hypothetical protein	NA	NA	NA	NA
AUZ06324.1\|2445788_2445965_-	hypothetical protein	NA	NA	NA	NA
AUZ06325.1\|2445957_2446194_-	hypothetical protein	NA	NA	NA	NA
AUZ06326.1\|2446237_2446423_-	hypothetical protein	NA	NA	NA	NA
AUZ06327.1\|2446409_2446517_-	hypothetical protein	NA	NA	NA	NA
AUZ06328.1\|2446593_2446713_-	hypothetical protein	NA	NA	NA	NA
AUZ06329.1\|2447003_2448554_-	putative bacteriophage BK5-T	Q38324	Lactococcus_phage	8.0e-31	27.2
AUZ06330.1\|2449431_2450277_-	hypothetical protein	M9NYX6	Enterobacteria_phage	1.8e-69	48.2
AUZ06331.1\|2450334_2451009_-	peptidase S24-like protein	A0A2H4J8I0	uncultured_Caudovirales_phage	1.2e-26	45.4
AUZ06332.1\|2451136_2451385_+	hypothetical protein	NA	NA	NA	NA
AUZ06333.1\|2451533_2451776_+	hypothetical protein	A0A088FAW9	Sulfitobacter_phage	3.7e-07	43.8
AUZ06334.1\|2451779_2452949_+	hypothetical protein	R9TH17	Synechococcus_phage	3.3e-05	43.3
AUZ06335.1\|2453039_2453492_+	hypothetical protein	A0A2H4JDN1	uncultured_Caudovirales_phage	7.3e-33	52.7
AUZ06336.1\|2453503_2453725_+	hypothetical protein	NA	NA	NA	NA
AUZ06337.1\|2453724_2454042_+	hypothetical protein	NA	NA	NA	NA
AUZ06338.1\|2454117_2454711_+	putative tape measure domain of caudovirus	A0A1W6DXW2	Salmonella_phage	6.0e-11	47.6
AUZ06339.1\|2454707_2455334_+	hypothetical protein	A0A1X9SFI6	Acinetobacter_phage	2.2e-27	41.3
AUZ06340.1\|2455318_2455528_+	hypothetical protein	NA	NA	NA	NA
AUZ06341.1\|2455618_2456053_+	hypothetical protein	NA	NA	NA	NA
AUZ06342.1\|2456062_2456527_+	hypothetical protein	NA	NA	NA	NA
AUZ06343.1\|2456842_2457139_+	hypothetical protein	NA	NA	NA	NA
AUZ06344.1\|2457950_2458196_+	hypothetical protein	A0A2H4J344	uncultured_Caudovirales_phage	8.2e-07	44.8
AUZ06345.1\|2458216_2458531_+	hypothetical protein	Q3HQS7	Burkholderia_phage	1.7e-25	59.6
AUZ06346.1\|2458524_2459898_+\|terminase	phage terminase	A0A2H4J6B3	uncultured_Caudovirales_phage	1.9e-132	52.2
AUZ06347.1\|2459950_2461138_+\|portal	phage portal protein HK97	Q3HQS8	Burkholderia_phage	5.4e-120	56.0
2460204:2460221	attR	NA	NA	NA	NA
AUZ06348.1\|2461134_2461983_+\|protease	Clp protease	Q3HQS9	Burkholderia_phage	3.1e-77	52.8
AUZ06349.1\|2461986_2462253_+	hypothetical protein	NA	NA	NA	NA
AUZ06350.1\|2462249_2463287_+\|capsid	phage major capsid protein HK97	Q3HQT0	Burkholderia_phage	1.9e-113	60.3
AUZ06351.1\|2463352_2463577_+	hypothetical protein	Q3HQT1	Burkholderia_phage	1.1e-05	50.0
AUZ06352.1\|2463576_2463900_+\|head,tail	putative phage head-tail adaptor	Q8SBH7	Shigella_phage	9.2e-06	31.2
AUZ06353.1\|2463901_2464231_+\|head,tail	putative phage head-tail adaptor	Q8W6U2	Burkholderia_virus	6.1e-13	40.8
AUZ06354.1\|2464220_2464682_+	hypothetical protein	NA	NA	NA	NA
AUZ06355.1\|2464681_2465056_+	hypothetical protein	NA	NA	NA	NA
AUZ06356.1\|2465126_2465762_+	hypothetical protein	NA	NA	NA	NA
AUZ06357.1\|2465835_2466297_+	hypothetical protein	NA	NA	NA	NA
AUZ06358.1\|2466420_2466636_+	hypothetical protein	NA	NA	NA	NA
AUZ06359.1\|2466641_2470355_+	putative tape measure domain of caudovirus	A0A1C6ZDP8	Pseudomonas_phage	2.3e-47	44.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP019644

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection