CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP012389	Lactobacillus amylovorus strain JBD401 chromosome, complete genome	0 crisprs	cas3,DEDDh,cas1,cas2,csa3,cas14j	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

870413 : 954072

Virus_Rctr41k(12.5%)

protease,integrase,tRNA,transposase

attL 889555:889569|attR 953214:953228

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUX15774.1\|870413_871730_+\|tRNA	methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase	NA	NA	NA	NA
AUX15775.1\|871729_872638_+	recombinase XerC	A0A1P8DJJ6	Virus_Rctr41k	5.6e-16	26.1
AUX15776.1\|872647_873172_+\|protease	ATP-dependent protease	NA	NA	NA	NA
AUX15777.1\|873183_874581_+\|protease	ATP-dependent protease	A0A1B2IB03	Erwinia_phage	2.6e-28	24.9
AUX15778.1\|874720_875617_+	aldose epimerase	NA	NA	NA	NA
AUX15779.1\|875713_876982_+	PTS lactose transporter subunit IIBC	NA	NA	NA	NA
AUX15780.1\|876978_877836_+	acyltransferase	NA	NA	NA	NA
AUX15781.1\|877878_878688_-\|integrase	integrase	NA	NA	NA	NA
AUX15782.1\|878892_879282_+	chromosome condensation protein CrcB	NA	NA	NA	NA
AUX15783.1\|879283_879661_+	camphor resistance protein CrcB	A0A2H4PQR0	Staphylococcus_phage	7.2e-10	33.6
AUX15784.1\|879702_881103_-	dipeptidase PepV	NA	NA	NA	NA
AUX15785.1\|881281_881770_+	hypothetical protein	NA	NA	NA	NA
AUX15786.1\|882333_882531_+	hypothetical protein	NA	NA	NA	NA
AUX15787.1\|882566_882881_+	hypothetical protein	NA	NA	NA	NA
AUX15788.1\|883045_884518_-	amino acid permease	NA	NA	NA	NA
AUX15789.1\|884755_886849_+	ornithine decarboxylase	NA	NA	NA	NA
AUX15790.1\|886867_888130_+	aluminum resistance protein	NA	NA	NA	NA
AUX15791.1\|888236_888908_-	potassium transporter Trk	NA	NA	NA	NA
AUX15792.1\|888900_890241_-	ATP synthase subunit J	NA	NA	NA	NA
889555:889569	attL	NA	NA	NA	NA
AUX15793.1\|890352_892119_+	ATP-dependent DNA helicase RecQ	A0A1V0SBK0	Catovirus	5.7e-81	41.3
AUX15794.1\|892212_892665_+	transcriptional regulator	NA	NA	NA	NA
AUX15795.1\|892807_893791_+	homocysteine methyltransferase	NA	NA	NA	NA
AUX15796.1\|894876_896001_+	penicillin-binding protein	A0A1D8EXR7	Mycobacterium_phage	1.4e-05	25.9
AUX15797.1\|896903_897461_+	hypothetical protein	NA	NA	NA	NA
AUX15798.1\|897536_898742_+	hypothetical protein	NA	NA	NA	NA
AUX15799.1\|898983_899337_+	hypothetical protein	NA	NA	NA	NA
AUX15800.1\|900014_900185_+	trehalose hydrolase	NA	NA	NA	NA
AUX15801.1\|900372_901818_+	amino acid permease	NA	NA	NA	NA
AUX15802.1\|902258_903806_+	conjugal transfer protein	NA	NA	NA	NA
AUX15803.1\|903881_904994_-	capsule biosynthesis protein	NA	NA	NA	NA
AUX15804.1\|905060_905954_+	phospho-beta-glycosidase	NA	NA	NA	NA
AUX15805.1\|906001_906445_+	hypothetical protein	NA	NA	NA	NA
AUX15806.1\|912097_913006_+	CRISPR-associated protein Cas1	NA	NA	NA	NA
AUX15807.1\|912983_913289_+	CRISPR-associated protein Cas2	NA	NA	NA	NA
AUX15808.1\|916381_917314_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA
AUX15809.1\|917447_918092_+	NAD(P)H-dependent quinone reductase	NA	NA	NA	NA
AUX15810.1\|918148_918679_+	hypothetical protein	NA	NA	NA	NA
AUX15811.1\|926337_926568_+	copper-binding protein	NA	NA	NA	NA
AUX15812.1\|926567_927119_+	DNA-binding protein	NA	NA	NA	NA
AUX15813.1\|927137_927767_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
AUX15814.1\|927893_928646_+	GNAT family acetyltransferase	NA	NA	NA	NA
AUX15815.1\|929330_930749_+	ATPase	NA	NA	NA	NA
AUX15816.1\|930749_932300_+	hypothetical protein	NA	NA	NA	NA
AUX15817.1\|932247_933273_+	hypothetical protein	NA	NA	NA	NA
AUX15818.1\|933880_934225_+	hypothetical protein	NA	NA	NA	NA
AUX15819.1\|934507_934687_+	hypothetical protein	NA	NA	NA	NA
AUX15820.1\|934743_935139_+	hypothetical protein	NA	NA	NA	NA
AUX16661.1\|935199_936990_+	ATP-dependent exonuclease	NA	NA	NA	NA
AUX15821.1\|940616_941027_-	hypothetical protein	NA	NA	NA	NA
AUX15822.1\|941201_942974_+	hypothetical protein	NA	NA	NA	NA
AUX15823.1\|943101_944289_+	amidohydrolase	NA	NA	NA	NA
AUX15824.1\|946226_946640_-	hypothetical protein	NA	NA	NA	NA
AUX15825.1\|946700_947735_-\|transposase	transposase	Q9MBM9	Staphylococcus_prophage	1.5e-33	31.8
AUX15826.1\|948302_948635_+	hypothetical protein	NA	NA	NA	NA
AUX15827.1\|948653_949703_-\|integrase	integrase	H7BWC8	unidentified_phage	9.2e-47	33.7
AUX15828.1\|950179_951298_+	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase	A0A218MNE0	uncultured_virus	3.0e-72	40.1
AUX15829.1\|951478_951952_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
AUX15830.1\|952060_952876_+	HAD family hydrolase	NA	NA	NA	NA
AUX15831.1\|952890_954072_+\|protease	serine protease	NA	NA	NA	NA
953214:953228	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1120262 : 1160960

Lactobacillus_phage(86.49%)

tail,terminase,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUX15954.1\|1120262_1120601_+	enterolysin	Q6SEC2	Lactobacillus_prophage	1.4e-12	44.3
AUX15955.1\|1120708_1121236_+	methionine sulfoxide reductase A	NA	NA	NA	NA
AUX15956.1\|1121666_1122791_-	lysin	L0P6H6	Lactobacillus_phage	5.2e-165	77.0
AUX16669.1\|1122865_1123261_-	hypothetical protein	L0P6Z4	Lactobacillus_phage	4.8e-41	71.4
AUX15957.1\|1123275_1123521_-	hypothetical protein	L0P6E4	Lactobacillus_phage	2.5e-19	67.6
AUX15958.1\|1123504_1123714_-	hypothetical protein	L0P8N8	Lactobacillus_phage	4.9e-08	68.1
AUX15959.1\|1123731_1124136_-	hypothetical protein	NA	NA	NA	NA
AUX15960.1\|1124095_1124275_-	hypothetical protein	L0P7C5	Lactobacillus_phage	7.3e-13	66.7
AUX15961.1\|1124276_1124876_-	hypothetical protein	L0P6H5	Lactobacillus_phage	2.1e-88	88.1
AUX15962.1\|1124975_1125308_-	hypothetical protein	NA	NA	NA	NA
AUX15963.1\|1125368_1125743_-	hypothetical protein	NA	NA	NA	NA
AUX15964.1\|1126190_1127141_-	hypothetical protein	L0P6E1	Lactobacillus_phage	1.5e-43	40.7
AUX15965.1\|1127115_1128243_-	hypothetical protein	L0P6E1	Lactobacillus_phage	6.6e-75	74.7
AUX16670.1\|1129964_1130378_-	hypothetical protein	L0P6H1	Lactobacillus_phage	3.4e-61	89.1
AUX16671.1\|1130403_1130766_-	hypothetical protein	L0P6Y6	Lactobacillus_phage	4.3e-52	90.1
AUX15966.1\|1131789_1132491_-	hypothetical protein	L0P8M9	Lactobacillus_phage	2.0e-106	85.6
AUX16672.1\|1132494_1132968_-	hypothetical protein	L0P7B8	Lactobacillus_phage	2.6e-57	84.7
AUX15967.1\|1135009_1135249_-	hypothetical protein	L0P6G7	Lactobacillus_phage	2.0e-13	98.3
AUX15968.1\|1135497_1135914_-	hypothetical protein	L0P6Y3	Lactobacillus_phage	4.9e-68	99.3
AUX15969.1\|1135926_1136403_-\|tail	phage tail protein	L0P6D4	Lactobacillus_phage	7.5e-81	96.1
AUX15970.1\|1137892_1138093_-	hypothetical protein	L0P7B3	Lactobacillus_phage	1.5e-14	65.7
AUX15971.1\|1138061_1138487_-	hypothetical protein	L0P6G4	Lactobacillus_phage	1.6e-74	95.7
AUX15972.1\|1138483_1138885_-	hypothetical protein	X2CXN4	Lactobacillus_phage	3.9e-38	54.9
AUX15973.1\|1138881_1139244_-	hypothetical protein	A9D9T8	Lactobacillus_prophage	2.2e-40	69.2
AUX15974.1\|1139240_1139612_-	hypothetical protein	L0P6D1	Lactobacillus_phage	8.3e-59	92.7
AUX15975.1\|1139629_1140706_-\|capsid	capsid protein	L0P8M2	Lactobacillus_phage	1.8e-191	95.5
AUX15976.1\|1140720_1141260_-\|capsid	phage capsid protein	L0P7B0	Lactobacillus_phage	3.0e-86	93.9
AUX15977.1\|1141580_1141847_-	hypothetical protein	NA	NA	NA	NA
AUX15978.1\|1141846_1143229_-\|head	phage head protein	A9D9S7	Lactobacillus_prophage	4.8e-120	60.2
AUX15979.1\|1144633_1145920_-\|terminase	terminase	X2CYF4	Lactobacillus_phage	1.7e-175	70.1
AUX15980.1\|1145906_1146389_-	hypothetical protein	L0P6X1	Lactobacillus_phage	1.7e-67	85.3
AUX15981.1\|1146461_1147004_-	hypothetical protein	A0A090DC14	Clostridium_phage	3.1e-06	27.8
AUX15982.1\|1147072_1147372_-	hypothetical protein	NA	NA	NA	NA
AUX15983.1\|1147356_1147920_-	hypothetical protein	NA	NA	NA	NA
AUX15984.1\|1148493_1148937_-	hypothetical protein	Q6SEE2	Lactobacillus_prophage	2.4e-44	62.9
AUX15985.1\|1149066_1149618_-	hypothetical protein	L0P8Q7	Lactobacillus_phage	6.0e-05	59.0
AUX15986.1\|1149604_1149946_-	VRR-NUC domain protein	L0P7E5	Lactobacillus_phage	1.6e-45	78.9
AUX15987.1\|1149994_1150177_-	hypothetical protein	NA	NA	NA	NA
AUX15988.1\|1150180_1150366_-	hypothetical protein	NA	NA	NA	NA
AUX15989.1\|1152220_1152466_+	hypothetical protein	NA	NA	NA	NA
AUX15990.1\|1152448_1152706_-	hypothetical protein	NA	NA	NA	NA
AUX15991.1\|1152698_1153499_-	DNA primase	U3PBE3	Lactobacillus_phage	1.3e-88	65.2
AUX15992.1\|1153500_1153809_-	hypothetical protein	NA	NA	NA	NA
AUX15993.1\|1153824_1154412_-	hypothetical protein	U3PDN3	Lactobacillus_phage	2.6e-43	48.7
AUX15994.1\|1154414_1155167_-	NTP-binding protein	U3PIS9	Lactobacillus_phage	1.1e-73	60.0
AUX15995.1\|1155168_1155357_-	XRE family transcriptional regulator	NA	NA	NA	NA
AUX15996.1\|1155434_1155752_+	hypothetical protein	E9LUT2	Lactobacillus_phage	2.4e-06	29.0
AUX15997.1\|1155748_1155931_-	hypothetical protein	NA	NA	NA	NA
AUX15998.1\|1155927_1157199_-	DEAD/DEAH box helicase	U3PFS7	Lactobacillus_phage	1.3e-135	58.0
AUX15999.1\|1157316_1157676_-	hypothetical protein	NA	NA	NA	NA
AUX16000.1\|1157678_1157909_-	hypothetical protein	NA	NA	NA	NA
AUX16001.1\|1157905_1158289_-	hypothetical protein	NA	NA	NA	NA
AUX16002.1\|1158288_1158765_-	hypothetical protein	A0A0A1EL06	Lactobacillus_phage	1.5e-25	41.5
AUX16003.1\|1159038_1159347_-	hypothetical protein	NA	NA	NA	NA
AUX16004.1\|1160177_1160960_-	antirepressor	L0P8P6	Lactobacillus_phage	5.7e-94	69.0

DBSCAN-SWA_3

1614963 : 1623731

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUX16347.1\|1614963_1615560_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	7.4e-25	34.1
AUX16348.1\|1615569_1616607_-	phosphoribosylaminoimidazole synthetase	Q58MH8	Prochlorococcus_phage	5.5e-60	41.2
AUX16349.1\|1616608_1618060_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.6e-60	34.2
AUX16350.1\|1618035_1620264_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	2.7e-144	39.7
AUX16351.1\|1620260_1620932_-	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
AUX16352.1\|1620928_1621183_-	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
AUX16353.1\|1621183_1621900_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	G8EYA2	Synechococcus_phage	1.3e-39	38.7
AUX16354.1\|1622104_1623280_-	phosphoribosylaminoimidazole carboxylase	NA	NA	NA	NA
AUX16355.1\|1623245_1623731_-	N5-carboxyaminoimidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.4e-21	45.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage