CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026674	Pseudomonas sp. SWI44 chromosome, complete genome	5 crisprs	cas3,RT,DinG,DEDDh,csa3,WYL	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP026674_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026674_1

302895-302969

Orphan

Consensus_repeat	Method
TTTACGTTTACGTAAAGGTGATGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026674_1

>merge|CP026674|1|302895-302969|CRISPRCasFinder
TTTACGTTTACGTAAAGGTGATGAATGGATTGACAGCGATGAGGGTCAGGTTTACGTTAACGTAAAGGTGATGAA

>CP026674|1|1|302895-302969|CRISPRCasFinder
TTTACGTTTACGTAAAGGTGATGAA	TGGATTGACAGCGATGAGGGTCAGG
TTTACGTTAACGTAAAGGTGATGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP026674.1\|AVD85889.1\|310903_311686_-\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|377240
CP026674.1\|AVD85872.1\|285942_287730_-\|type-VI-secretion-system-baseplate-subunit-TssF	unknown	unknown	gnl\|CDD\|274541
CP026674.1\|AVD85886.1\|308683_309391_-\|Cro/Cl-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224885
CP026674.1\|AVD85885.1\|306655_308608_+\|3-methylcrotonyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|227111
CP026674.1\|AVD85880.1\|298775_300794_-\|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	unknown	unknown	gnl\|CDD\|200482
CP026674.1\|AVD85882.1\|303049_304213_+\|isovaleryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173845
CP026674.1\|AVD85883.1\|304232_305840_+\|methylcrotonoyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|178415
CP026674.1\|AVD85884.1\|305843_306659_+\|gamma-carboxygeranoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|168168
CP026674.1\|AVD85890.1\|311682_312669_-\|epimerase	unknown	unknown	gnl\|CDD\|187549
CP026674.1\|AVD85879.1\|295319_298631_-\|maltose-alpha-D-glucosyltransferase	unknown	unknown	gnl\|CDD\|274140
CP026674.1\|AVD85878.1\|293108_295319_-\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445
CP026674.1\|AVD85874.1\|288288_289761_-\|type-VI-secretion-system-contractile-sheath-large-subunit	unknown	unknown	gnl\|CDD\|274538
CP026674.1\|AVD85887.1\|309479_309791_+\|hypothetical-protein	unknown	unknown	unknown
CP026674.1\|AVD85873.1\|287858_288281_-\|type-VI-secretion-system-baseplate-subunit-TssE	unknown	unknown	gnl\|CDD\|274540
CP026674.1\|AVD85888.1\|310223_310739_+\|DUF4880-domain-containing-protein	unknown	unknown	gnl\|CDD\|379797
CP026674.1\|AVD85876.1\|290322_291879_-\|type-VI-secretion-system-protein-TssA	unknown	unknown	gnl\|CDD\|274543
CP026674.1\|AVD85875.1\|289788_290289_-\|type-VI-secretion-system-contractile-sheath-small-subunit	unknown	unknown	gnl\|CDD\|377529
CP026674.1\|AVD85891.1\|312659_313652_-\|fumarylacetoacetate-hydrolase	unknown	unknown	gnl\|CDD\|223257
CP026674.1\|AVD85881.1\|301163_302831_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
CP026674.1\|AVD85877.1\|292713_292977_-\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269829

Protein	Function_ID	Function_description	E-value
CP026674.1\|AVD85889.1\|310903_311686_-\|cyclase-family-protein	gnl\|CDD\|377240	pfam04199, Cyclase, Putative cyclase. Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site.	3.59612e-39
CP026674.1\|AVD85872.1\|285942_287730_-\|type-VI-secretion-system-baseplate-subunit-TssF	gnl\|CDD\|274541	TIGR03359, VI_chp_6, type VI secretion protein, VC_A0110 family. This protein family is associated with type VI secretion in a number of pathogenic bacteria. Mutation is associated with impaired virulence, such as impaired infection of plants by Rhizobium leguminosarum.	0
CP026674.1\|AVD85886.1\|308683_309391_-\|Cro/Cl-family-transcriptional-regulator	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	4.45711e-18
CP026674.1\|AVD85885.1\|306655_308608_+\|3-methylcrotonyl-CoA-carboxylase	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
CP026674.1\|AVD85880.1\|298775_300794_-\|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	gnl\|CDD\|200482	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins. GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
CP026674.1\|AVD85882.1\|303049_304213_+\|isovaleryl-CoA-dehydrogenase	gnl\|CDD\|173845	cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.	0
CP026674.1\|AVD85883.1\|304232_305840_+\|methylcrotonoyl-CoA-carboxylase	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
CP026674.1\|AVD85884.1\|305843_306659_+\|gamma-carboxygeranoyl-CoA-hydratase	gnl\|CDD\|168168	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.	0
CP026674.1\|AVD85890.1\|311682_312669_-\|epimerase	gnl\|CDD\|187549	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs. Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.07184e-78
CP026674.1\|AVD85879.1\|295319_298631_-\|maltose-alpha-D-glucosyltransferase	gnl\|CDD\|274140	TIGR02456, Trehalose_synthase, trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (). [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
CP026674.1\|AVD85878.1\|293108_295319_-\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
CP026674.1\|AVD85874.1\|288288_289761_-\|type-VI-secretion-system-contractile-sheath-large-subunit	gnl\|CDD\|274538	TIGR03355, VI_chp_2, type VI secretion protein, EvpB/VC_A0108 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
CP026674.1\|AVD85873.1\|287858_288281_-\|type-VI-secretion-system-baseplate-subunit-TssE	gnl\|CDD\|274540	TIGR03357, hypothetical_protein_Atu4338, type VI secretion system lysozyme-like protein. The description for Pfam family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.	2.02614e-45
CP026674.1\|AVD85888.1\|310223_310739_+\|DUF4880-domain-containing-protein	gnl\|CDD\|379797	pfam16220, DUF4880, Domain of unknown function (DUF4880). This domain can be found on the N-terminal of uncharacterized proteins from various Rhodopseudomonas and Pseudomonas species, often, but not always followed by the ron siderophore sensor protein family (FecR, PF04773). The function of this domain is unknown.	1.58532e-08
CP026674.1\|AVD85876.1\|290322_291879_-\|type-VI-secretion-system-protein-TssA	gnl\|CDD\|274543	TIGR03362, VI_chp_7, type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812). [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	4.18893e-97
CP026674.1\|AVD85875.1\|289788_290289_-\|type-VI-secretion-system-contractile-sheath-small-subunit	gnl\|CDD\|377529	pfam05591, T6SS_VipA, Type VI secretion system, VipA, VC_A0107 or Hcp2. VipA is a family of Gram-negative bacterial proteins that form part of the type VI pathogenic secretion system. Members have been variously defined as VC_A0107 family, Hcp2 and VipA, for ClpV-interacting proteins. VipB and VipA proteins interact very closely to form the shaft of the pathogenic penetrating needle system.	4.63847e-65
CP026674.1\|AVD85891.1\|312659_313652_-\|fumarylacetoacetate-hydrolase	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	5.06249e-43
CP026674.1\|AVD85881.1\|301163_302831_-\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
CP026674.1\|AVD85877.1\|292713_292977_-\|PAAR-domain-containing-protein	gnl\|CDD\|269829	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family of mostly beta- and gamma-proteobacteria, and forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). Most members contain C-terminal domain extensions corresponding to several uncharacterized domains such as S-type pyocin, DUF2235, DUF2345 and cytotoxic proteins. However, these terminal domains are exposed to solution, and do not distort the binding site of VgrG. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes.	2.00223e-31

>CP026674.1|AVD85881.1|301163_302831_-|AMP-binding-protein
MSQPSYTRGRQDRPLLTQTIGQAFDATVARCADGEALVARHQGLRYTWRQLAEQVEMHARALMALEVNTGDRVGIWSPNCAQWCILQLASAKVGAILVNINPAYRVGELEYVLRQSGCRWLVCADAFKTSDYHAMVQELVPELASATAGELACERLPDLRGVISLAATPPVGFLPWQALAERAGQVSAQACVARQQSLQFDQPVNIQYTSGTTGAPKGATLSHYNILNNGFMVGESLGLTERDRMVIPVPLYHCFGMVMANLGCITHGSTMIYPNDAFDAELTLRAVAQERASILYGVPTMFIAMLDHPSRAQMDLSTLRSGIMAGATCPIEVMRRVIDQMHMAEVQIAYGMTETSPVSLQTGPDDDLELRVTTVGRTQPQLETKLVDQEGRIVPRGEIGELCTRGYSVMLGYWDNTQATVDAIDPAGWMHTGDLAVMDDAGYVRIVGRNKDMIIRGGENIYPRELEEFFYTHPAVADAQVIGIPCNKYGEEVVAWIKLHPGHSATVEELQAWCKARIAHFKVPRHYRFVDEFPMTVTGKVQKFRMREISMAELG
>CP026674.1|AVD85880.1|298775_300794_-|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase
MTRNEPFESVPMANDHPDQAISLSQALLAPRIVIEDTSPVLDAGTFAAKAISGQPVTVSSKVYSDGHDRLAVTLLWRQAHSRRWHCVPMHSPGNDLWLAEFTPVELGLHLFSIEAWIDPFATYCHDLEKKYHAGVEVSLELEEGRLMLGKGLERSDGALRKEIQTLLDSLPTLPADDQVALLLDANTARLMSEAEHRSYLTRSTEFPLDVDREAALFASWYELFPRSITDSPDRHGTFNDVHARLPMIRDMGFDVLYFPPIHPIGTQYRKGRNNALRAEPGDPGSPYAIGSHEGGHEAIHPQLGSRDDFRRLVAAAAEHGLEIALDFAIQCSQDHPWLKEHPGWFSWRPDGTIRYAENPPKKYQDIVNVDFYAPEAVPSLWLALRDVVVGWVEEGVKTFRVDNPHTKPLPFWQWLIANVRSQHPEVIFLAEAFTRPAMMARLGKVGYAQSYTYFTWRNTKQELREYFEQLNQPPWSQCYRPNFFVNTPDINPFFLHSSGRAGFLIRAALATMGSGLWGMYSGFELCESTPLPGKEEYMDSEKYEIRPRDFTQPGNIIAEIAQLNRIRRQNRALQTHLGVAFFNCWNDNILYFAKRTPERDNFILVAVSLDPHNAQEASFELPLWELGLDDNADTLGEDLMTGHRWTWHGKTQWMRIEPWHSPFGIWRIEKAH
>CP026674.1|AVD85879.1|295319_298631_-|maltose-alpha-D-glucosyltransferase
MAKRSRPAAFIDDPLWYKDAVIYQLHVKSFFDANNDGIGDFPGLINKLDYIAELGVNTLWLLPFYPSPRRDDGYDIAEYKAVHPDYGSMADAKRFIAEAHKRGLRVITELVINHTSDQHPWFQRARHAKRGSKARDFYVWSDDDQKYDGTRIIFLDTEKSNWTWDPVAGQYFWHRFYSHQPDLNFDNPQVLKAVIGVMRFWLDMGVDGLRLDAIPYLIERDGTNNENLPETHQVLKAIRAEIDANYPDRMLLAEANQWPEDTHPYFGEGDGDECHMAFHFPLMPRMYMALAMEDRFPITDILRQTPEIPANCQWAIFLRNHDELTLEMVTDRERDYLWNYYAEDRRARINLGIRRRLAPLLQRDRRRIELLTSLLLSMPGTPTLYYGDELGMGDNIYLGDRDGVRTPMQWSPDRNGGFSKADPQRLVLPPIMDPLYGYQTVNAEAQSHDPHSLLNWNRRLLAVRKQQKAFGRGTFKMLTPSNRRILAYLREYTDANGNTEVILCVANVSRAAQAAELELSPYADMVPVEMLGGSAFPPIGQLPFLLTLPPYAFYWFLLTSHDRMPSWHIQPSEGLPELTTLVLRKRMEELLDAPCRDTLETAILPQYLPKRRWFAGKEGPLDQVQLSYGVRLATATTPVLLSEIEVRSEDTVTRYQLPFGLLPEEQITTALPQQLALSRVRRGRQVGLITDAFVLEPFIRAVLRNCEAGTRLPCTAGELRFERTDLLAAAGLSEESQVRYLGAEQSNSSVVVADRVVLKLIRRVNAGVHPELEMSAYLTAAGFTNISPLLAWVSRVDEQGTPHLLMIAQGYLSNQGDAWAWTQNTLERAIRDQMEPSSNTPDAHADALAELNGFAALLGQRLGEMHLLLARPSDDPAFTPRPSDARDSKRWSEQITAELARALDLLAQHRDSLDADSQALVDDLQQQRDGLAQHIDNLARQAQGGLLMRVHGDLHLGQVLVVQGDAYLIDFEGEPARPLDERRAKHSPYKDVTGVLRSFDYAAAMILRSASAVDLSDAARQARQRVARQYLHQSRHAFVEAYGLATAAMPHAWQQAEGERAALELFCLEKAAYEITYEAENRPSWLAVPLHGLHGLISTWGES
>CP026674.1|AVD85878.1|293108_295319_-|1,4-alpha-glucan-branching-protein-GlgB
MNATTRENGGLRQRDLDALARAEHADPFAVLGPHGDGTGGSFVRAFLPNALNARVLARHDGQVLADMVQGSLPGLFTAHLDEAQPYLLQIGWAGGEQVTEDPYSFGPQLGDMDLYLFAEGNHRDLSGRFGAQPTQVDGVAGVCFSVWAPNARRVSVVGDFNNWDGRRHPMRLRHSTGVWELFVPRIGVGETYKFEVLGKEGVLPLKADPLARATELPPSTASKVADALSHPWQDHDWMAHRAQRHAYSAPLSIYELHAGSWRCELDDAGEIARYYNWRELAERLVPYVQELGFTHIELMPIMEHPFGGSWGYQPLSLFAPTSRYGSAEDFAAFVDACHQGGIGVILDWVPAHFPTDEHGLARFDGTALYEYDNPLEGFHQDWNTLIYNLGRNEVRGFMMASALHWLKHFHIDGLRVDAVASMLYRDYSRKSGEWVPNRHGGRENLEAIDFIRHLNGVAAHEAPGALIIAEESTAWPGVSQPIQQGGLGFAYKWNMGWMHDTLHYIQNDPIHRTYHHNEMSFGLIYAYSEHFILPISHDEVVHGKHSLIDKMPGDRWQKFANLRAYLTFMWTHPGKKLLFMGCEFGQWREWNHDDELDWYLLQYPEHQGVQRLVSDLNRLYRNLPQLHEQDCQPQGFQWLIGDDAHNSVYAWLRWSSQGDPLLVVANFTPVPREGYRIGVPFGERWQELLNSDAELYAGSNVGNLGAVDCEAVASHGQPVSLSLNLPPLGVLVMRPA
>CP026674.1|AVD85877.1|292713_292977_-|PAAR-domain-containing-protein
MKDIIRLGDSTTHGGKVLGSFGNTNVNGKPIAGVGHMVSCPLCKGVFPIVEGSATYSVDGIPVALDGHKTACGAALIASGPKSVVAS
>CP026674.1|AVD85876.1|290322_291879_-|type-VI-secretion-system-protein-TssA
MSYSSKLTARFAALASNAIAPGSFVGEDVRFSSEFEALEAELGKAQSIHASGQVDWLKILEGGETLLREQSKDLRVGAWLTWALYQRESYAGLLAGLGMLRQLCEQHWETVHPQKARTRSAAIGWLVPRLEQALDSDIAIKEQLPLFQQMVEHLAGLEAFLSQQLGTDAPMLLPLCRSLKNQVQRSASNEPPAGSVGAIVNQVKQAATQLFTPGEPVESEKDAGKALRAQQEQGRQLCVWWQRQKATDLRALRLNRTLLWLPIEAVPERNAENVTALRGVPVDKLKSYRDRFEQGAYADLLVELENSVAKAPFWFDGQRMVWECCQALNVEAGMREVEMNFASLLQRLPMLIELKFHDGTPFADPETRAWIASQVSPHLQAVVAQPVVESSERQAPWEEALEAAIPVLRKDGLKKAVQQLKQQMQGCHGGRERFFWQLSQARLCFTAKKYELAKTQLEALDLQLCQSGLDAWEPDLSLQVLHLLHTCCELLPQNHVVRERKDEIYRRLCHLDLEVVLE
>CP026674.1|AVD85875.1|289788_290289_-|type-VI-secretion-system-contractile-sheath-small-subunit
MAKEGSVAPKERINVTFKPATGGAQEEIELPLKLLAIGDYTLRADDRKIEDRKPISIDKMNFDEVLAKQELSMTLAVPNRLQEGAESDELAVSLRINSMKDFNPASLVEQVPELKKLMELREALVALKGPLGNAPAFRKAIEGVLADDASRERVLGELGINATPDA
>CP026674.1|AVD85874.1|288288_289761_-|type-VI-secretion-system-contractile-sheath-large-subunit
MSTAAQQQSAENSEFSILDSIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNDGEPVKKALVDRMIAEIDAKLSRQMDEILHHADFQAMESAWRGLQLLVDRTNFRENIKIEILNVSKQDLLDDFEDSPEVMQAGLYKHIYTAEYGQFGGQPVGAVIANYFLSPSSPDVKLMQYVSSVACMSHAPFIAAAGPKFFGLESFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDSRYIGLTVPRFLLRNPYDPEENPVKSFVYRETVANSHEHYLWGNTAFAFGTKLTDSFAKFRWCPNIIGPQSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFIALTMRKGSDNAAFFSANSVQKPKFFGISAEGKTAELNYKLGTQLPYMMIVNRLAHYIKVLQREQLGSWKERTDLELELNKWIRQYVADQENPSAEVRGRRPLRAAQVIVSDVEGEPGWYRVSLNVRPHFKYMGADFTLSLVGKLDKE
>CP026674.1|AVD85873.1|287858_288281_-|type-VI-secretion-system-baseplate-subunit-TssE
MTSGYGSLFERLSGEAGKRANWRREDAAMASVAAHLAKMLSTRAGSVQTLADYGLPDLNDMRLSLHDALSQARQAIEHFIEAYEPRLSDVRVISRPRDHDQLKLAFSIEGQLEVNGIKRQVSFAARLDGSGQVSVGQGDW
>CP026674.1|AVD85872.1|285942_287730_-|type-VI-secretion-system-baseplate-subunit-TssF
MSFNHYYQSELTALRQLGRRFAERSPALAPYLGQAGRDPDVERLLEGFAFLTGRLRQKLDDELPELTHSLMLLLWPNYMRPLPAFSILQFDPLRQAGPALLVERDTPVEGRPIDGVSCRFRTCYPTEVLPLKLSALNYSLNGQGALLSLRLDMNCDGHVGDVKLSRLRLHLAGERYISQMLYLSLLRGLAGIELIALCSNGKPLLNDAGDPLVLKARDAKVHPVGFAEEEALIPYPLNTFRGYRFLQEYFAFQDKFLFVDVTGLDVLQRLPEETLKQVHGVEVRFDIRKAEAQRLRPTLDNVKLYCTPIVNLFKHDALPIRLDGKQDEYLLLPAELDPEHCGVFSVDGVTGWSPGGLGYQEYVPFESFEHDPSFDVPHSRSHYSLRQRSSLLHDGLDTYLSFGVHGGEFHETLSIELTCTNQNLPRRLKLGDICMLSEQTPEFLTFRNITAVTSSYAPPLNRDFLWKLISNMSLNYLSLADVDALKVILETYDLPRYYDQHAEKVSRRLLGGLKSIRHQHVDRLHRGLPLRGLRTELTIDPEGYIGEGDLFVFASVLNEFFALYASLNSYHELRVKSTQGEVYQWTPRMGLQPLL
>CP026674.1|AVD85882.1|303049_304213_+|isovaleryl-CoA-dehydrogenase
MHYPSLNFALGETIDMLRDQVRTFVAAELAPRAAQIDHDNLFPADMWRKFGDMGLLGITVPEEYGGAGLGYLAHVVSMEEISRGSASVALSYGAHSNLCVNQINRNGSHEQKLKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKRGDHYVLNGSKTWITNGPDANTYVIYAKTDLDKGPHGITAFIVERDWKGFSRSNKFDKLGMRGSNTCELFFDGVEVPQENILGQLNGGVRVLMSGLDYERVVLSGGPTGIMQSCMDLVVPYIHDRKQFGQSIGEFQLIQGKIADMYTQLNASRAYLYAVAQACDRGETTRKDAAGVILYTAERATQMALEAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
>CP026674.1|AVD85883.1|304232_305840_+|methylcrotonoyl-CoA-carboxylase
MAILHTQINPRSAEFASNSAAMLEQVQALRSLLAQVSQGGGPKAQERHTSRGKLLPRERIDRLLDTGSPFLEIGQLAAHEVYGEDVPAAGLIAGIGRVEGVECMIVANDATVKGGSYYPLTVKKHLRAQTIALQNRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSALGIAQIAVVMGSCTAGGAYVPAMADEAIMVRQQATIFLAGPPLVRAATGEVVSAEDLGGADVHCRTSGVADHYADNDEHALALARRSVANLNWHKLGKLQRQTPIAPLYSAEELYGVVPADAKQPFDVREVIARLVDGSVFDEFKALFGTTLVCGFAHLHGYPVAILANNGILFAEAAQKGAHFIELACQRGIPLLFLQNITGFMVGKKYEEGGIAKHGAKLVTAVACAQVPKFTVIIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGVMGAEQAAGVLAQVKREQSERSGQPFSAEDEARLKQPILDQYEHQGHPYYSSARLWDDGVIDPAQTRDVLGLALSASLNAPIEQSRFGIFRM
>CP026674.1|AVD85884.1|305843_306659_+|gamma-carboxygeranoyl-CoA-hydratase
MSDFSTLEVIRDPRGFATLWLSREDKNNAFNALMIRELIVALDQLAEDASLRFLLLRGRGRHFSAGADLAWMQQSAQLDFNTNLDDARELGELMYALHRLKAPTLAVVQGAAFGGALGLISCCDMAIGAEDAQLCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFSGVRAHELGLLAQVYPAAELDAQVEAWVANLLQNSPQALRVTKDLLREVDDGELSPALRRYCENTIARIRVSAEGQEGLRAFLEKRRPAWQNDDKKEPRP
>CP026674.1|AVD85885.1|306655_308608_+|3-methylcrotonyl-CoA-carboxylase
MSRPTLTTLLVANRGEIACRVMRTAKSMGLTTVAVHSATDRDARHSREADIRVDLGGTKAAESYLVIDKLLAAAKASGAQAIHPGYGFLSENATFARAIEQAGLIFLGPPASAIDAMGSKSAAKALMEAAGVPLVPGYHGEAQDLETFRAAAERIGYPVLLKASAGGGGKGMKVVEGESQLADALASAQREAQSSFGDSRMLVEKYVLKPRHVEIQVFADQHGNCLYLNERDCSIQRRHQKVVEEAPAPGLSPELRQAMGEAAVRAAQAIGYVGAGTVEFLLDARGEFFFMEMNTRLQVEHPVTEAITGLDLVAWQIRVACGEPLPITQAEVPLMGHAIEVRLYAEDPANEFLPATGTLTLYRESAPGEGRRVDSGVSEGDVVSPFYDPMLSKLIAWGQDREQARLRLLAMLNEFAIGGLKTNINFLRRILAHPAFAEAELDTGFIPRHQDVLLPAPQALPATFWEAAAEAWLLGQAPHERADDAGSPWREHNGLRLGLPARSSLHLLSGGQAQAVALERSAASTWQLDGEQLCQDHDGMRRRHLAVRKGSTLFLRWEGEVHAVEAFDPIAEAEASHGHQGGLTAPMNGSIVRVLVELGQRVEAGAALVVLEAMKMEHSIRAPHAGTVKALFCQEGDMVSEGTALVELAE
>CP026674.1|AVD85886.1|308683_309391_-|Cro/Cl-family-transcriptional-regulator
MFIERSKAVRIVPAMNMDKWIALVRERMEELDISQEQLAERVGVSQGSVGHWLCKRRQPRVDSMNRVFVELGMPHYHVSMQLRVLGRVGEDPGSYTLDEVDDDQDLMQYIVCFRYPVLGWEQVGSSTAESSTVFEQTDYLAQGKAFWLPVENDAMSTNTGRSVPQGMRVLVDPGLEAVPGKLVVARLPGKSAILRELAEEGGQRYLKALNNSYPALLCEEGCEFLGVVVQAHGVF
>CP026674.1|AVD85887.1|309479_309791_+|hypothetical-protein
MKPSKKDETDLDSEAARRALDYYLNPNPTRPTAQNKIWTLHEGVTGEQAQEHAIALLRCAAATAQETAQHQQGTQRELTFALMHMMDMARALLEHKRSVQTGL
>CP026674.1|AVD85888.1|310223_310739_+|DUF4880-domain-containing-protein
MSRSLLPVEHSPHAVAGPTDDALLHGLKRLPRRVQQVFLLNRLDQLDFPCIATRLGLPLSSVERHMIQALQCARPRGDALARLAGHWYVRLQNPQASACERIDFRRWLDADPAHLQAFHETELCWRSLLAPARALGHDGWYRQGRAALSLGGCSIAVGLGIAALLLLGLSA
>CP026674.1|AVD85889.1|310903_311686_-|cyclase-family-protein
MSISARRLLDLSVTLDNNPYTDPPPLLPKIDYMDHQQGWPEMAAMFPGLRKEDLPGDESWAAERLQITTHSGTHMDAPWHYASTTDGGKPAFGIDELPLEWCLQPGVKLDMRHLPDGHVVSAAEVEAELARIGHELQPLDIVLVNTRAGSLFGQPGYLEAGVGMGREATLYLLERGVRVVGTDAWSWDAPFKYTRERFIASGDASIIWEGHKAGRDIGYGQMEKLANLEKLPPFGFLVSCFPYKIRRASAGFVRAVAIFT
>CP026674.1|AVD85890.1|311682_312669_-|epimerase
MRVMITGANGFVGRQLVRRLLDRGQLRGQRIEALLLLDQVLDGLPEDTRLRCHTGNITDAALLRRILADGVDVVFHLVSVPGGAAEAQYELGYQVNLQASLELLNQLRNRCRPPVLVYASSVAVYGGELPLRMDEGQPASPQLSYAAHKRMVEIALQDLSRRGEVDGRALRLPGIVARPREPNGLRSAFMSDLLHAYAAGDAYTCPVSPDARAWWMSANCCVDNLLRAAELEEPGNQRIWQLPVLHLSIAQVLAGLATSFGEANGARISFAPDPQLQAQFGSYPPLRTPQARELGFCHDGSVAALLRNALDLPLRRSNRATHRKGIPA
>CP026674.1|AVD85891.1|312659_313652_-|fumarylacetoacetate-hydrolase
MKLATLDDGSRDGRLLVVARDLGQAVDASDIAANLQVALENWPQVEARLQQRYQQLNDNTARGRFDLDLTRLAAPLPRASQWLDGSCFLSHGELMQKAFNLDPIEGVEHTPLIYQGASDDFLGPCADIPLPSEAHGIDFEGEFAVLLDDVPMGCLAEQALQHVRLVLQLNDVSLRALAPREMKTGFGFLQAKPASTFAPVAVTPDELGDAWREGRVHLPLQVEWNGQWFGHPHGGTMHFGFHQLIAHAALTRRLSAGTLIGSGTVSNADRSVGSACIAERRAIETIATGAPRTAFMRFGDRVRMEARGLSGEVLFGAIDQRVVQGGGPCA

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Crispr_ID: CP026674_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026674_2

371054-371132

Orphan

Consensus_repeat	Method
GAGTCGGCGGTTTTGGTCTGTTTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026674_2

>merge|CP026674|2|371054-371132|CRISPRCasFinder
GAGTCGGCGGTTTTGGTCTGTTTCGACTCTGATCCGATTCGGACCACTTCAGCCGAGTCGGCTGTTTTGGTCTGTTTCG

>CP026674|2|2|371054-371132|CRISPRCasFinder
GAGTCGGCGGTTTTGGTCTGTTTCG	ACTCTGATCCGATTCGGACCACTTCAGCC
GAGTCGGCTGTTTTGGTCTGTTTCG

Protein	Signature genes	Signature genes Name	Protein_function
CP026674.1\|AVD85939.1\|367558_367882_-\|phage-holin,-lambda-family	unknown	unknown	gnl\|CDD\|368287
CP026674.1\|AVD85947.1\|376329_376776_-\|structural-protein-P5	unknown	unknown	gnl\|CDD\|222880
CP026674.1\|AVD85942.1\|369277_370000_-\|hypothetical-protein	unknown	unknown	unknown
CP026674.1\|AVD90723.1\|373169_373394_-\|hypothetical-protein	unknown	unknown	unknown
CP026674.1\|AVD85938.1\|367220_367559_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|224321
CP026674.1\|AVD85950.1\|379131_379446_-\|hypothetical-protein	unknown	unknown	unknown
CP026674.1\|AVD85949.1\|378255_379131_-\|hypothetical-protein	unknown	unknown	unknown
CP026674.1\|AVD85946.1\|375808_376333_-\|DUF2514-domain-containing-protein	unknown	unknown	gnl\|CDD\|287666
CP026674.1\|AVD85935.1\|362371_362971_+\|tail-assembly-protein	unknown	unknown	gnl\|CDD\|227067
CP026674.1\|AVD85943.1\|370011_370329_-\|hypothetical-protein	unknown	unknown	unknown
CP026674.1\|AVD85936.1\|363938_365237_-\|phage-portal-protein	unknown	unknown	gnl\|CDD\|273677
CP026674.1\|AVD90724.1\|376834_377230_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367075
CP026674.1\|AVD85945.1\|372781_373090_-\|hypothetical-protein	unknown	unknown	unknown
CP026674.1\|AVD90722.1\|371343_372279_+\|integrase	unknown	unknown	gnl\|CDD\|271181
CP026674.1\|AVD85937.1\|365387_367067_-\|terminase	unknown	unknown	gnl\|CDD\|226974
CP026674.1\|AVD85940.1\|367978_368236_-\|hypothetical-protein	unknown	unknown	unknown
CP026674.1\|AVD85944.1\|372585_372792_-\|hypothetical-protein	unknown	unknown	unknown
CP026674.1\|AVD85948.1\|377427_378240_-\|phage-tail-protein	unknown	unknown	unknown
CP026674.1\|AVD85941.1\|368278_369274_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225232
CP026674.1\|AVD85934.1\|361907_362330_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP026674.1\|AVD85939.1\|367558_367882_-\|phage-holin,-lambda-family	gnl\|CDD\|368287	pfam05106, Phage_holin_3_1, Phage holin family (Lysis protein S). This family represents one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.	1.20207e-39
CP026674.1\|AVD85936.1\|363938_365237_-\|phage-portal-protein	gnl\|CDD\|273677	TIGR01537, portal_protein, phage portal protein, HK97 family. This model represents one of several distantly related families of phage portal protein. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. It functions as a dodecamer of a single polypeptide of average mol. wt. of 40-90 KDa. [Mobile and extrachromosomal element functions, Prophage functions].	4.16352e-113
CP026674.1\|AVD90724.1\|376834_377230_-\|hypothetical-protein	gnl\|CDD\|367075	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK. This family contains bacterial and phage tail fibre assembly proteins. E.coli contains several members of this family although the function of these proteins is uncertain. Using the lambda phage members as examples, there are both gptfa and gpK tail proteins here. GpK forms part of the TTC or tail-tip complex that is located at the distal end of the tail. TTCs form the platform on which the tail-tube proteins self-assemble and are also the attachment point for fibers or receptor-binding proteins that mediate phage-adsorption to the surface of the host cell. TTC assembly starts with gpJ, which is also known as the central tail fibre and is involved in host-cell adsorption. It is the C-terminus of gpJ that interacts with the lamB receptor on host cells. A number of intermediates including gpK then interact with gpJ during tail morphogenesis.	1.50287e-12
CP026674.1\|AVD90722.1\|371343_372279_+\|integrase	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	1.76383e-36
CP026674.1\|AVD85935.1\|362371_362971_+\|tail-assembly-protein	gnl\|CDD\|227067	COG4723, COG4723, Phage-related protein, tail component [Function unknown].	1.3435e-47
CP026674.1\|AVD85938.1\|367220_367559_-\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	2.26407e-07
CP026674.1\|AVD85946.1\|375808_376333_-\|DUF2514-domain-containing-protein	gnl\|CDD\|287666	pfam10721, DUF2514, Protein of unknown function (DUF2514). This family is conserved in bacteria and some viruses. The function is not known.	4.35126e-26
CP026674.1\|AVD85941.1\|368278_369274_-\|hypothetical-protein	gnl\|CDD\|225232	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only].	8.31869e-27
CP026674.1\|AVD85937.1\|365387_367067_-\|terminase	gnl\|CDD\|226974	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only].	5.21923e-171
CP026674.1\|AVD85947.1\|376329_376776_-\|structural-protein-P5	gnl\|CDD\|222880	PHA02564, V, virion protein; Provisional.	1.93404e-45

>CP026674.1|AVD85943.1|370011_370329_-|hypothetical-protein
MRKSHGPAFKKAVIDLDECPLCRGRAVTQGVFHELPCDYCNASGWVAAATGDALALDELVTQLSMRLRAALRQIEQLKNPQASGPEGTYQGSNRRGAGGTNYTGD
>CP026674.1|AVD85942.1|369277_370000_-|hypothetical-protein
MIYNSVSGAVVAALAAGEKGAAKGQAWQKLYKAAEEEGGCLASLGGQSGGFDRAQVDYWLSARLHHLLIPRHWQALNAKYATSKGKKLQGISSIAPLIASPAPQLFIYKAVTAWAVPKLKGARRKGPRSVSVEIPLNAPEWRRNNLVNAALAAGQAERKKAEALADDLIVLPDIFYDMNTWDLNGTSEPTRRRWRAGIKNTLDEMVAEALAQVETILIAEGLLLDLFGAQMRGCQSVMGG
>CP026674.1|AVD85941.1|368278_369274_-|hypothetical-protein
MQDLETLRTGYQDVLPRAERLKNAVIAELLELFQKSGVALGVPIESRVKAWASIAEKLDRKRMVLSSIHDLTDLIGIRVILLFKKDLDAVRTILSQNFELISSEDTGERLGESEFGYQSHHYLLKIPATWLSVPTWSGFGGFTLEFQVRTMAQHIWAAASHKLQYKQESGVPHPIRRSINRVSALLETVDLEIQRVLDERDAYKGNVLVSTDYDLVDDSDLNVDNLALILSEIYPRANRAEFENYSELLSDMLELGVKSQAEARKIFRRHYERTMAAEKMHVADGVGDFDEEPDTRPTGVYFKHVGLAREALRGEFGEEIFRSKQLTTVSD
>CP026674.1|AVD85940.1|367978_368236_-|hypothetical-protein
MTNLLSGAVATPIQVGVLAGIVAIGLILLFISNLMYAKVHEPSVADESTKEVTGMKTLDSAVLKTSQDVGAGIVSSLIVALIRAF
>CP026674.1|AVD85939.1|367558_367882_-|phage-holin,-lambda-family
MPNMPEKDPGLWAAVLAWALAHQPQMYAAGLSVAIAALRVVYGGGTRRQMMLEGALCGLITLALVPLLEWMGLPQGMATFAGGAVGFMGVEKLRGYSDLFLSRKAQG
>CP026674.1|AVD85938.1|367220_367559_-|HNH-endonuclease
MARLKTLGPRIKESAGSRVKLVSPGSWRSGMTSSQRGYDYKWQKAREQYLRDNPLCVYCERNGRTTAARVVDHIIAHRGDMVLFWDQTNWQGLCKPCHDSVKQAEEAAGLSG
>CP026674.1|AVD85937.1|365387_367067_-|terminase
MLWTTACPDWWRRLAASESIIPEPLFPQEAEESLEVFKGLRIVDAPGSPTIESACAPWVLAFAGAVFGSYNSETGERLIREFMLCIPKKNSKSTIAAAIMLTALVRNWRMSAEFIILAPTKEIADNAFVPAKDMVNNDDELKDLLHVQPHLRLITHRETGATLKVVAADSDVVGGKKAVGVLIDEAWLFGKNPKAADMIREATGGLLSRPEGFVIWLTTQSNEPPAGVFRSKLNYARGVRDGRINDNRFLPIIYEFSKEMIDSGDARKPENFHLVNPNMGFSVDRPTLERLFMQAEIDGEAELRGFLAKHLNIEIGLALMSDAWVGAEFWEPQAATWLNLNEILERCEVIDVGGDGGGLDDLLGLAVVGREASTRRWFHWAHAWAHPSVLERRKSEAPRLKDLEAVGDLTIVKRIGEDVEQFAAIVARINETGLLDKVGLDPAGIGSVLDALADAGVEEDKIVGISQGWKLTGAIKTTERKLAEGTLLHCGQPLMAWSCGNAKGVPSANAFLITKQASGTAKIDPLMATFNAVSLISLNPEGRGGMDNFMAGIRDPLIA
>CP026674.1|AVD85936.1|363938_365237_-|phage-portal-protein
MIKTLSQALGAAAAKPSASMSEWLGRSIKLSDGGFWGAFLGAQSSSGKTVSVDKAMRLSTVWACVRIISTSVAGLPLSIYRRMPDGSRESARDFPLYDVVHTSPNEDMAAFHFWQAVVASMLLWGNAYCEIHRSAGRVIALDFLMPSRVDLEFDDDGRLRYFFRPRKGARREIVRQNMLHIPAFTLDGRIGLSAIRYGADVFGSAMSADDAANSTFRNGMMPTVAFSVDKTLNPAQRVEFREYVKTISGALNAGKSPVLEQGVKPEMIGINPADAQLLESRGHSIEEICRWFGVPPWMVMKTDKGSNWGTGLEQQQIAFLTYCIMSFTAPIEQCVNKWCMTAVDRINFYSEFSLEAFLRADSSGRAAYLSTMAQNGFITRNEGRRKDNMPHMPGGDVLTVQSNLVPLDQLGKQDDGQAARAALMNWLQQPEK
>CP026674.1|AVD85935.1|362371_362971_+|tail-assembly-protein
MTAVLMSSRMTTIKLSGALAKKFGRIHQRLIDSGTVKEVFSALKATLPGFEEEIRRLDSKGLRFAIFRNGKNIGQKDFERSGSQEVRIVPVIRGSKRAGVLQTIIGVVMIVAGAFLSATPFGAPLMSAGIGLVAGGVIQMLSPQAKGLSQSAASENLPSYAFGSAKNTTASGNPVPICIGERRWGGAIISASIEAHDKT
>CP026674.1|AVD85934.1|361907_362330_+|hypothetical-protein
MRILVGALGLVLLAGCSTSATPVQQAELVPKDELYAYQAAPAGTSGSLTVVRDSGALGSGCDIVVYVEGRKSAKVGPGQRATFYLPPGQPNLGIGLSGSGLCGGMAVRSITARVEPGKESFYRISGDMSGVYIGPYIDYN
>CP026674.1|AVD90722.1|371343_372279_+|integrase
MRGGDLVAEVLGESSVTLGEFLVTYERDVLPPRELAKATLDLYAVRFKQIRAEFAERPIDQITIRMIAEFLEPLTPRASNQARAILIDLFNHAAAKGLCPDNPAANTIPRIEKKQRKRHTLEGLKAIRDKSPRWLKNAIDLALITAQRRGDILDMKFEDVRDGYLYVVQNKTEKASDAGWLKIKVTDQLGEVLSRCRDDILSPYLVHRRPERKKKREGKDHWTKVDERFLTRAFKDARDAAGCYSDLKEEEMPGFHEVRALSLHLYKRAGKDGQKIAGHTTEGMTRNYQKGHEDVVWSEVEADLDIGEIAG
>CP026674.1|AVD85944.1|372585_372792_-|hypothetical-protein
MATSLPPAWLAELNDQGALVTDPDGRAAVLDEMAYAARRRREVDACDLVDMLEIVESARLWALDGSDL
>CP026674.1|AVD85945.1|372781_373090_-|hypothetical-protein
MYFLVVRRRVRGVAIPADQLRKVKPLKADIHIGEHHSEVLGRVATQAWVFNPTPSGDIIPRLLDAKVNGMAQLGMNINGVEEVDGVLYAQSWWCRAEGSYGN
>CP026674.1|AVD90723.1|373169_373394_-|hypothetical-protein
MGKRSFIGMVEAGEPLIRQAIEAMKDYHGAQDRGAPAEEVERLRLLAESLFEAVSDYQARVIAKARGKDLPPMH
>CP026674.1|AVD85946.1|375808_376333_-|DUF2514-domain-containing-protein
MKILVIRLGLLALVLASYWGAYQHGRSVERAESGLVSAQRDSGDRLAEVLGERGARAEEQRRATAQEEARAHAREEHQVADVGAAAADAAGQRMRGDAANLAAIVSCPGTDTAAVARGQAATRAAMVLSDLLARADERAGELAKAYDRARIAGEQCEREYDALVAKRAAVSARE
>CP026674.1|AVD85947.1|376329_376776_-|structural-protein-P5
MTIPRGVRNNNPGNIDFNPRNAWQGQLGLEVGVPKPRFARFDTPENGIRALGKLLINYRGKDGMSGVGGKGIDTVLETIHRWAPANENDTKAYAAAVAKRLGVGIADPINIKNLATLRGMVISIIIHENGGNPYDAAVIDEGVLRALV
>CP026674.1|AVD90724.1|376834_377230_-|hypothetical-protein
MLPHSADAPQAARFPVDLYPADGQVQLPGLELGERLASTDGVIDWSQAITAEAKAQAAADQLLATVTADLAQRRAVADAVIAPLQDAVELEEATEAEVALLREWKRYRLTLIRLPEQEGYPTSIDWPAPPA
>CP026674.1|AVD85948.1|377427_378240_-|phage-tail-protein
MPWYRTGTVAIAAGQNTVTGTGTSFSANARVGDAFLGPDGNWYEVTNIASATVLSILPAYKGSTVSGGAYAVVPVQGYDKSLRDAINAIVQQWGATLAGLGAVSTENVLPVSKGGTGGTTQADARTGLGLKKAAVADIVGTVSQSGGTPTGAIYERGSNANGEYTAYADGTLECFARVECTYSLANLLVGPWTYPKAFSSATYVPVVEVTVMQPAAADITPVTSAELSAQVAVVGYASASPRVWKSPGTSNNFTSASKVTVGVTAKGRWF
>CP026674.1|AVD85949.1|378255_379131_-|hypothetical-protein
MSAGLKVFKEDGSLLFDTEKITYGLLKSGYMTLLVNWPRLDYRSANLPPNQGSSYAESSITDAIHGFSVTGAVAPIVFIVGSGISCGSSRSGDTTTFYYIGASPSTKYYYFDTMRDTLSGAGLKCYDEAGTLTFNSLQYPLNIVATVSAPAPPTPTVVNGTANYGVPFAGATKLATRFINSGPYYCVARVFISVGSGEFAAATTFSRSFGQGRMDGMSAPGSPFPAYSNQQAHMDGAYGASGGIYFMSCDAARTTMYWGAPVTYNNYYGIPTDKYPEALIIKTDNLPFPFN
>CP026674.1|AVD85950.1|379131_379446_-|hypothetical-protein
MSTGLKVYDPNGLVLLDMTSSISQMMGYVDTGAANGSLSIPLPPAGKELFYAITELSAQNKYLGKRPGVTLTVGASSATLAWQYSYAGGWGFYSLNCRIHYGYH

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Crispr_ID: CP026674_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026674_3

3360412-3360519

Orphan

Consensus_repeat	Method
CCTACGTTTGTTTCGGGCCAGTAACGGCAGTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026674_3

>merge|CP026674|3|3360412-3360519|CRISPRCasFinder
CCTACGTTTGTTTCGGGCCAGTAACGGCAGTGACGGGCGCGCGCGACTCGTAGCGCATCGCGAGCAAGGCTCGCGCCTACGTTTGTTTCGGGCCAGTAACGGCAGTGA

>CP026674|3|3|3360412-3360519|CRISPRCasFinder
CCTACGTTTGTTTCGGGCCAGTAACGGCAGTGA	CGGGCGCGCGCGACTCGTAGCGCATCGCGAGCAAGGCTCGCG
CCTACGTTTGTTTCGGGCCAGTAACGGCAGTGA

Protein	Signature genes	Signature genes Name	Protein_function
CP026674.1\|AVD90832.1\|3356538_3357597_+\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	unknown	unknown	gnl\|CDD\|185333
CP026674.1\|AVD88542.1\|3365023_3365842_+\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852
CP026674.1\|AVD88534.1\|3354244_3355201_-\|iron-dicitrate-transport-regulator-FecR	unknown	unknown	gnl\|CDD\|236622
CP026674.1\|AVD88545.1\|3368855_3370370_+\|RND-transporter	unknown	unknown	gnl\|CDD\|273830
CP026674.1\|AVD88535.1\|3355187_3355703_-\|RNA-polymerase-subunit-sigma	unknown	unknown	gnl\|CDD\|171561
CP026674.1\|AVD88532.1\|3350445_3351606_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
CP026674.1\|AVD88547.1\|3371456_3372476_+\|DUF2955-domain-containing-protein	unknown	unknown	gnl\|CDD\|371403
CP026674.1\|AVD88544.1\|3367745_3368843_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|182881
CP026674.1\|AVD88543.1\|3365941_3367663_+\|glutathione-regulated-potassium-efflux-system-protein-KefB	unknown	unknown	gnl\|CDD\|235131
CP026674.1\|AVD88529.1\|3346912_3347524_+\|lysine-transporter-LysE	unknown	unknown	gnl\|CDD\|273358
CP026674.1\|AVD88533.1\|3351676_3354148_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|227114
CP026674.1\|AVD88538.1\|3360625_3362056_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143428
CP026674.1\|AVD88541.1\|3364297_3364918_+\|hydrolase	unknown	unknown	gnl\|CDD\|238494
CP026674.1\|AVD88539.1\|3362069_3363569_-\|nitrate-reductase	unknown	unknown	gnl\|CDD\|224374
CP026674.1\|AVD88530.1\|3347759_3348683_-\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226235
CP026674.1\|AVD88546.1\|3370366_3371467_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
CP026674.1\|AVD88540.1\|3363665_3364055_-\|DUF4440-domain-containing-protein	unknown	unknown	gnl\|CDD\|379209
CP026674.1\|AVD88531.1\|3348873_3350088_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
CP026674.1\|AVD88536.1\|3355876_3356503_+\|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl\|CDD\|223200
CP026674.1\|AVD88537.1\|3357653_3360056_+\|DUF3772-domain-containing-protein	unknown	unknown	gnl\|CDD\|225803

Protein	Function_ID	Function_description	E-value
CP026674.1\|AVD90832.1\|3356538_3357597_+\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	gnl\|CDD\|185333	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada.	4.91096e-144
CP026674.1\|AVD88542.1\|3365023_3365842_+\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	1.08826e-140
CP026674.1\|AVD88534.1\|3354244_3355201_-\|iron-dicitrate-transport-regulator-FecR	gnl\|CDD\|236622	PRK09774, PRK09774, fec operon regulator FecR; Reviewed.	1.04237e-65
CP026674.1\|AVD88545.1\|3368855_3370370_+\|RND-transporter	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.78118e-73
CP026674.1\|AVD88535.1\|3355187_3355703_-\|RNA-polymerase-subunit-sigma	gnl\|CDD\|171561	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional.	1.37796e-55
CP026674.1\|AVD88532.1\|3350445_3351606_+\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.15731e-73
CP026674.1\|AVD88547.1\|3371456_3372476_+\|DUF2955-domain-containing-protein	gnl\|CDD\|371403	pfam11168, DUF2955, Protein of unknown function (DUF2955). Some members in this family of proteins with unknown function annotate the proteins as membrane protein. However, this cannot be confirmed.	2.63858e-25
CP026674.1\|AVD88544.1\|3367745_3368843_+\|AI-2E-family-transporter	gnl\|CDD\|182881	PRK10983, PRK10983, AI-2E family transporter YdiK.	1.64227e-36
CP026674.1\|AVD88543.1\|3365941_3367663_+\|glutathione-regulated-potassium-efflux-system-protein-KefB	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	1.33077e-158
CP026674.1\|AVD88529.1\|3346912_3347524_+\|lysine-transporter-LysE	gnl\|CDD\|273358	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein. [Transport and binding proteins, Amino acids, peptides and amines].	2.17781e-35
CP026674.1\|AVD88533.1\|3351676_3354148_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|227114	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism].	0
CP026674.1\|AVD88538.1\|3360625_3362056_-\|aldehyde-dehydrogenase	gnl\|CDD\|143428	cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.	0
CP026674.1\|AVD88541.1\|3364297_3364918_+\|hydrolase	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	2.81726e-71
CP026674.1\|AVD88539.1\|3362069_3363569_-\|nitrate-reductase	gnl\|CDD\|224374	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism].	4.58788e-77
CP026674.1\|AVD88530.1\|3347759_3348683_-\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	6.22244e-49
CP026674.1\|AVD88546.1\|3370366_3371467_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	3.12066e-69
CP026674.1\|AVD88540.1\|3363665_3364055_-\|DUF4440-domain-containing-protein	gnl\|CDD\|379209	pfam13474, SnoaL_3, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	9.0002e-16
CP026674.1\|AVD88531.1\|3348873_3350088_+\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.23599e-100
CP026674.1\|AVD88536.1\|3355876_3356503_+\|DNA-3-methyladenine-glycosylase	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	7.39615e-55
CP026674.1\|AVD88537.1\|3357653_3360056_+\|DUF3772-domain-containing-protein	gnl\|CDD\|225803	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	4.82355e-168

>CP026674.1|AVD88537.1|3357653_3360056_+|DUF3772-domain-containing-protein
MRRVSLARYCLGVIALMLALATPAWSAPATPVSNLAGGELPVLAEDASLDQLNERLDFIRQGVTSNANDDLLSQLRQAAIQVQRQADVLSSQRATDVQKLDDQLKVIGPAQPDEPQSLAQQRKQLEAEHKAVLAEQEQATKLTQSARDLSTQIVNLRRSQFNSQVTSRAASPLSPAFWQTLIRPTEEDVLRLRDLRSEAADAVASAFSAEHRWLFITSLVAAILVWTLVRRVLERLLADAMVRWLPEGRLRRSALALSVSLATLGTIAGSVSLLRWGLESSAELGADLASLTNHILTLVVFSAFISGLGRAMLMLQRPSWRLPPIHDEVASALGWFPKLLALALMVMLTQERINSVIGSSLALTVATNGLTALVVALIFSAALLRYRRTLRKHELERPTGLAGLIPFVIVVWVGLILLALLAGYLTLAYFLTAKLLWISVVATCAYLLTTFLGDLCETLLSPRQPGGLALASALGLAPRHQAQASTILAGIGRTALLFLALLLALMPSGTSPGELLLSLGDWDGTGGKVLGNLNIVPQDILLALVMFFGGLFGIRVVKRWLSERLLPETDMDAGMRASLVTLVGYLGFLFLAMLVMSTLRINLTSLTWVVSALSVGIGFGLQQIVQNFISGLILLTERPVKVGDWVSLAGVEGDIRRINVRATEIQMSDRSTVIVPNSQFISQNVRNVTMGNALGVVGISLTLPLETDANRVRELLLAAYREHESILDAPASSVTFKDLTASGMVIAVSGYVAGPRQVSGTRSDLLFTILGRLRDEGISLSSPQSMVLVQEGARPADEQA
>CP026674.1|AVD90832.1|3356538_3357597_+|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada
MSLYITDAQRWQAVQSRDSAAADDFVYAVRTTQVYCRPGCKSRMAKRENVVFFDDAAAAQAAGYRPCRRCGVDHDAAAARRTQLIARACRLIEAGDSAANLDQLAAQLAVSPFHLHRLFKAETGLTPKAYAAAFRARALREQLGDEQRSMTEAIYEAGYNSNSRFYETAGQRLGMLPKAYKAGGAGATIRFALGECSLGAILVAQSEKGICAILLGDDPEALLHELQDQFPKASLIGGDSEFERLVAEVVGFVEAPSIGLALPLDVQGTAFQERVWQALREVPAGSRVSYTDIAERIGAPKAMRAVAQACAANRIAVAIPCHRVVRRDGDVSGYRWGVERKVQLLTRETALS
>CP026674.1|AVD88536.1|3355876_3356503_+|DNA-3-methyladenine-glycosylase
MILADLSPEAFSEATDYLASLDPDWARHIAATGPCLHQATPEREPYEALVRAIAYQQLHARAAEAILARLLALFPDVAFPEPSQLLATTPEVMRACGFSASKLATIHGIAQARMDGVIPDRQEALSLTDDALIERLVALRGVGRWTVEMLLIYCLERSDILPVDDFGVREGYRRLKGWDKAPTPAQLRSLGGAWSPYRTVAAWYLWRA
>CP026674.1|AVD88535.1|3355187_3355703_-|RNA-polymerase-subunit-sigma
MQMNDTLKPTEVALLYQSHHAWLRGWLRSRVGCHEHAADLAQDTFVRLLRARQVSPLKEPRAYLSSIARGLMIDQFRRRALERAYLESLATLPEAEIPSEEHRLVILDTLERLDRALQQLKPRVRQAFLLAQLDGLSIAQIALRLDVSRATVERDLAKALGVCYRLRYADL
>CP026674.1|AVD88534.1|3354244_3355201_-|iron-dicitrate-transport-regulator-FecR
MPTSDSTPNQAQVDQAIDWLVRLRFDTPSPRTRQRFQQWLASHPHNAHAWERVSHLSDELAGLPSELSRRTLEGSQRQRISRRDHLKLLAVLAVGSSLGWAAREPLGLPALLADTHTSTGERRQLLGSDGSRIQLNTASAIDLRYSDTQRELTLVHGEVSLACNANDNRPFLLGTRIGALSTRDGHLLLRENDQGVLLAVRSGEVTMFPDSSAPRRVQPGEVLQVASAASYAPATLYADPWGWTDGVLSVQQMPLGEFVAELSRYRPGLLRCAPEVAGLKVSGTYQLADTERILLLLARSLPVRVVYRTRYWVSIGAV
>CP026674.1|AVD88533.1|3351676_3354148_-|TonB-dependent-siderophore-receptor
MIHPCSPRNDRLRHAVRAAVFGLGLGAGLAASVTALAAPASQRQQLDWRIAAGPLAPALDQLARQGGLNLSFDANSLQGKTTQGVQGRHDAAQALSILLQGSDVQVQQEGDNSFLLIPAMDVGDALELGATSISSNRLGETTENTGSYTTGAVTIGKIPQSLRHTPQSVSVVTRQRIDDQNITNLTNLLEQTPGVVVNYTDSERVQYFSRGFLIDAIQYDGATVVQSSGGGSFIQSDSAFIDRAEVLRGATGMLRGAGNPSGTVNLVRKRPTHEFQASGTATLGSWNAQRYVADISGPLTDTGNVRGRVIAVHDDRDLFQDSRMERKEAFGGSLAFDLDDSTTLTTGFEWTKLDATGAWGNLPADYDGSPLPLGRSTYLGADWNRWDRSNLNTYAELEHHFDNDWTLKLMALRSHFELDDNGFKQTYMTRAPARLNPTNNPYLMQYQVTEGDGGESLQNNLSATLNGPFDLFGRTHELMLGVERIRNDSYASGTNRVVYSDVVDIRDWDPRTSLDEPTITDIPHPVRTRTTQQAVHATWRISLADPLTAIIGARANWYDYEQENNAGASGKFSVDEKIVPYAALIYDLNDNFSVYASYTEIFNPQTVVDKNNKVLDPIVGEAYETGIKGEFYDGRLNTSLAFFRINQVGTPIDDTSVPIGCNGSTGYCKIASGKSRSEGIDLEISGEVLPGWQVTGGYTYNTTEYVKNTAQTNGDAIRTTDPEHMLRVFTSYRLPGTLDAWTIGAGVQAQSDIYSQSGSAKATQAGYAVYNGLLKYRINDNYSVQLNANNLFDKHYYRQIGTTATGYYWGDPRNVSVTLRGSF
>CP026674.1|AVD88532.1|3350445_3351606_+|MFS-transporter
MNMRLLAGLLFAVSVVGFSLGASLPLVSLRLHEAGAGTLEIGIISAIPAAGMMLSAFLVDACCRHLTRRVIYLLSFSLCTLSIALLEWAFDSMLWLALLRLGLGVGMGIAIILGESWVNELCPDHNRGKIMALYATSFTGFQVLGPAMLAIIGANSPWITGVVTACYGLALLCILLTVPNDHVEHGDEGEKSFGLAGFFRVAPALCVAVLFFSFFDAVVLSLLPVYATSHGFAVGVAALMVTVVFAGDMVFQLPLGWLADRVERTGLHLVCGLVAMSIGIALPWLLQMTWLLWPLLVLLGAVAGGIYTLALVLIGQRFKGQDLVTANASVGLLWGVGSLVGPLVSGAAMDVAPHGLPMALALMAGMFVCFARQSYRRAGKLRALAD
>CP026674.1|AVD88531.1|3348873_3350088_+|MFS-transporter
MATSSASTASASGSASHANPLVMRIIAFCALAHLINDLIQSVLPAIYPMLKANYDLSFAQIGLITLTFQITASLLQPWVGFFTDRRPTPNLLPMGTLCTLVGIVMLAFVGSFPMILLASALVGIGSSTFHPETSRIARLASGGRFGLAQSTFQVGGNAGSAFGPLLAAAIVIPFGQSHVAWFGLAGLFFFGVTLMLRRWYKDHLSQAKARKAVQAAHGISRQRVIAALIVLGLLVFSKYFYMASFTSYFTFYLIEKFDLSVASSQLHLFLFLGAVAAGTFFGGPIGDRIGRKAVIWFSILGVAPFTLALPYADLFWTTVLSVVIGFILASAFSAIVVYAQELVPGSVGMIAGVFFGLMFGFGGIGAALLGYVADLRGIEYVYGVCSYLPLFGLLAVFLPNTGKR
>CP026674.1|AVD88530.1|3347759_3348683_-|peptide-ABC-transporter-substrate-binding-protein
MPAQQTQREAQQQALEWFSRMRQPGCDDIERREFAAWCQDPLNAHAYAELEALWQHLQPPQVRPRPLPATPRRSHLGKAMALLCLLLAGALVYLYWPLMQRWGSELHTEAGERRSVRLADGSTLHLDSASAMNVDLRSRTRQLQLVQGQVYLEVMLDGRAMDLQVDDARIQVFGSRLMVARHADHDEVVVINGKAMVIQGGDQRMVSSGERVTFNQARIDTVQKVDIDRATAWRSGALRVTDMPLGQVLERLAGYQGRRVWLMDQQAAYRRISGDFSLDRAQDSLDKLAAAQRLTLNGLLGHWLIVR
>CP026674.1|AVD88529.1|3346912_3347524_+|lysine-transporter-LysE
MNELVAIAVFTVLAVISPGADFAMVTRTSYAQGRKAGLAAALGIALGVQVHVLYTVLGIAVIISRSPTLFMGMKVLGAGYLIYLGYQSLTNTRRIRLEGGSSRAGMLQAMRTGFLTNAFNPKTLLFVISAYTQVVKPGSALQLDFAYGAFMSFAHWAWFSLVAVFFSSEGLRRAMIERQRMVDRMIGVALIGLGLAVAISGVR
>CP026674.1|AVD88538.1|3360625_3362056_-|aldehyde-dehydrogenase
MTHSHYIAGRWVEGQGSDCITVNDPSLGQPFAELRAASVAQVDQAVAAARQALTTWKAVSAAARAAFLRGFAEQLGQRREELIGLQMRNNGKPRHEAEIDLDDAVATFAYYADLAEQLPAKNRDVPLAAPGFTARTRLEPVGVVGLIVPWNFPLVTSAWKLAPALAAGCTVVLKPSEVTPLIEQAYGQIADTLGLPAGVLNIVNGKAETGAALSGHNGLDKLSFTGSNSVGSQVMRSASAQCRPVTLELGGKSAIVVFDDCDVDQAVDWIVAGITWNAGQMCSATSRLLVQDGIADALLPRLQQALDKLRVGNPLIEEVDMGPLTSQAQWLKVASYFATAREEGLQCLAGGKALDRDGWFVSPTLYAEVPKDSRLWTEEIFGPVLCARRFSTEAQAIAEANDSRFGLVATVCSADLERAERVADALEVGHVWINSVQAVFVETSWGGTKGSGIGRELGPWGLSGYLSVKHVTRCLG
>CP026674.1|AVD88539.1|3362069_3363569_-|nitrate-reductase
MSHSTGIETNGVEQIPDDQRDASPLDLFRLIFGGANTFATAVLGSFPVLFGLSFQAGVWAIVLGVGVGSLILAPMGLFGALNGTNNAVSSGAHFGVHGRIVGSFLSLLTAVAFFSLSVWSSGDALVGGAKRLAGLPETDLTLGLAYGLFAVLVLVVCIFGFRFMLWVNKIAVWASSLLFLLGIFAFAGPFDADFAGSVNLGQPGFWAAFVGAAILAMSNPVSFGAFLGDWSRYIPRETPKARIMLAVIAAQVATLIPFLFGLCTATLVASQAPDYIAANNYVGGLLAISPSWFFLPVCLIAVIGGMSTGTTALYGTGLDMSSVFPRLLSRAGATLLIGVAAIAFIFIGRFTFNLVQSVSTFAVLIITCTSPWMVIMILGLITRRGFYHADDLQVFTRGQRGGHYWFLHGWNWRGMGAWIPSAAVGLCFVNLPGQFVGPLGDLAGGIDLSLPVTLGLAGVLYLILLNVFPEPAGVYGPNGPRWVPSKRTPHLPVTTAEMA
>CP026674.1|AVD88540.1|3363665_3364055_-|DUF4440-domain-containing-protein
MDQTLQVRQAAADLVEAFASNDTARYFACFSEDATFLFHTLPQPLLSRRAYEDLWAQWQAEGFAVLACRSSNVHVSLQGDVAVFMHDVATHIRMADQEHQLAERETIVFRRQGERWLACHEHLSVVTAA
>CP026674.1|AVD88541.1|3364297_3364918_+|hydrolase
MTFQYKRLDKNDAAVLLVDHQAGLLSLVRDIDPDRFKNNVLALSDLAKYFKLPTILTTSFETGPNGPLVPELKAQFPDAPYIARPGNINAWDNEDFVKAVKATGKKQLIIAGVVTEVCVAFPALSALEEGFEVFVVTDASGTFNELTRDSAWRRMEAAGAQLMTWFGVACELHRDWRNDIEGLGTLFSNHIPDYRNLMTSYNKLAK
>CP026674.1|AVD88542.1|3365023_3365842_+|polyphosphate-kinase-2
MSKSAKKKATQSSDEKLSGKDYEKALKSLHVELVKLQEWVVAKGLKVCIVFEGRDGAGKGGTIKAITERVSPRVFRVVALPAPTEREKTQMYVQRYLGHLPAAGEVVIFDRSWYNRAGVERVMGFCTEEQANKFLTVVPLFEKMMVESGIILIKYWLEVSAEEQTRRLQDRINDGRKLWKLSPMDLKSYSRWDDYTHARDEMFAASDSSWAPWFMAHSNDKRRARLNIISHLLSRIEYKDVTREEIVKLPKRGKIGKYKSVDYPFKVVPERF
>CP026674.1|AVD88543.1|3365941_3367663_+|glutathione-regulated-potassium-efflux-system-protein-KefB
MPHDGSLLQATVVFLLAVVLLVPLAQRLKLGAVPGYLLAGILIGPSMLGLINHPENVSRLSEMGVVMLLFVIGLELSPRRLWTMRRSLFGVGSLQVALTAVVLGLLAYLVFGQPRAAAIVLGLGLALSSTAFGLQVLAERRELGKPQGRLAVSILLFQDIAAIPLIAVVPLLGTGISPPEEGSWPLLAVALGVGLVIVTGRYLLQPVFRWTVGSGLHELSTATALLVVLGTAWVMEHVGVSMALGAFLAGVVMADSPFRHELESQVEPLKGLLLGLFFVGVGMTADLRLLLSMPVQVLGLTVLLVGVKLPLLFMLGRTAGGLERAQALCLAVVLASGGEFAFVVFKLALEHRVLEQQVHDLLVLAITLSMAVVPLVMMALARQLRDDATVAAAAAALPEVDETPQVVVAGLGRMGGAIVRMLHGEGVRLVALDTSIESVSRSSEPDGPLVFFGDPSRSEILRAARVDQAKLVIVATDDPQANLKAADVLAHLYPQTPVIAAARDSQEALRLLAMGVDPVRETFHSSLEMARRALIALGYSEEQASAWVQRYQRQEARRLLDQQHGKGDFPGAR
>CP026674.1|AVD88544.1|3367745_3368843_+|AI-2E-family-transporter
MQSGFKLDSALSRGLLDVLIKAGLVAALVIFAFQVFEPFLELMLWAVILAVTLYPLYSRIKRRIGLKNGYVATLVVLLVLVVLLVPIYLVVVSIGESVHSLVALLKEGGWSVPAPPESVAGWPLIGPRLYAFWQSASESLAPVMNNLMPHLKGVGLSMLGAAASAGGAFLLFIGAVIISGVIMAFGERGEIAAQRIAMRVSGEERGKPLAKLCTATIRAVAQGVIGIAFIQMLLIGVGFVVKGVPGAGMLAIVVLMLGIAQAPATLVTVPVIIYVFNVEGFTAATIVFAVYTFVAGLADNVLKPLLLGRGVDVPMPVVLIGALGGMVVKGIIGLFIGPVILGVAYVLFWQWVALQVPEQPVPPAA
>CP026674.1|AVD88545.1|3368855_3370370_+|RND-transporter
MPKRCHGLILLLVLTGCSQVGPDFAAPQDRWLQGWSTPLLEQTGRTAPTPDLSRWWAVFADPTLDALIAEADAQNTNLRVAGLRIVEARAQLAIVQTGRYPQLQQLRAQSLYLKQDQSGTPTARDSVFWQSSLGFDIAWEVDFWGRFSRAIESADAAYFASQANYADAMVLLRAQVADTYFGLRTAEARLAIAQENARRQARSLEITERLFRHGENDELDWQQARTQYLATQATIPEFQNQVNALRNVLCSLIGRPPGPLPELEARHGQLPLPDRAVLQDVPANLLQRRPDIRAAEQAVAAQSALVGVAEADLYPSLSLLGSIGWSFVTANHVPDTFDLAAGPSLIWNPFDYGRRKNAVRVEDARLQQLIERYHQNVRDAAREADDAASGLVRSLESAGIRQQASQAAQRSLSLASSQYREGFADFQRVLDAQQLLLQQQDGYLVSRGNAVSSLVSLYKALGGGWEQVGEPIPPATRQQMQQRTDWGTLLDGPAPEHQETGTRR
>CP026674.1|AVD88546.1|3370366_3371467_+|HlyD-family-secretion-protein
MSDAQGTPPTPAAPDRGMRWVLLLIVVSLVWYLLADRFTPYTQQARLQAYVVPVSAEVAGQIRRVAVGNNQEVRRGDVLFELDPEQYRIALARAEADLDTMRRQIGAHTAGIDSAQAALVAAQANERKARQDAERLKRLIDEDPGTVSVRRLEGAQATRDQAISQVAAARAEVERAREQQGGAEADNAQLRSAAANVQKARLDLARTVVRAEANGLITDLRTDVGHYVAAGSPMMTLIAIHDLWISADMTENNLGYLQSGTPVLVVLDALPGKVLRGRVRSIGRGVSVGQSTPPGSLPTVQNSREWLRSAQRFPVIVELERDQLQSAAGLRVGGQAEVMALPREGNPLNLLARVFMWLMSWMSYAY
>CP026674.1|AVD88547.1|3371456_3372476_+|DUF2955-domain-containing-protein
MPIELRRLRALRLAWGTALCLAVSFGLGLPVPILAPVFAVLLLAMRSQPLPLRAAPLLALLVLLSCGSGLLLIPLLRHAPVSGVLVVGTGVYLVLRYALLGGNGLLANLLVIGLTMIAAAGTSDFTLALSVVEAMAKGMLLATLGCALAHLLFPEPADAPVPSPPARLNDNEVGWVALRATLIVMPAFLLALIAPDTFMPLIMKSVSLGQQAGETHARHASRELIGSTLLAGALAILLWGALGLFVHLWMFFLWGLLFCLWQARRLYQAVMTQQTPAFWISCLTTFLILLGQSVQDSAAGQDVYRAFAVRMALFVAVSLYASAMLIWIDRRRARQVVTP

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Crispr_ID: CP026674_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026674_4

4996683-4996825

Orphan

Consensus_repeat	Method
CCGTAGCCGCTGCCGCAGGCTGCTCAGGCCCTGTGCCTCGCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026674_4

>merge|CP026674|4|4996683-4996825|CRISPRCasFinder
CCGTAGCCGCTGCCGCAGGCTGCTCAGGCCCTGTGCCTCGCTGAAGATTTCCAGTGTACTCAGAGCCCCGCGCAGCCTGACGGCAGCGGCTACAACGGTCCGTAGCCGCTGCCGCAGGCTGCGCAGGCCCTGTGCCTCGCTGA

>CP026674|4|4|4996683-4996825|CRISPRCasFinder
CCGTAGCCGCTGCCGCAGGCTGCTCAGGCCCTGTGCCTCGCTGA	AGATTTCCAGTGTACTCAGAGCCCCGCGCAGCCTGACGGCAGCGGCTACAACGGT
CCGTAGCCGCTGCCGCAGGCTGCGCAGGCCCTGTGCCTCGCTGA

Protein	Signature genes	Signature genes Name	Protein_function
CP026674.1\|AVD89954.1\|4992767_4993565_-\|ketoacyl-reductase	unknown	unknown	gnl\|CDD\|187602
CP026674.1\|AVD89958.1\|4996877_4997759_-\|phytanoyl-CoA-dioxygenase	unknown	unknown	gnl\|CDD\|368580
CP026674.1\|AVD89956.1\|4994331_4995120_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|187602
CP026674.1\|AVD89965.1\|5005041_5006205_-\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341472
CP026674.1\|AVD89957.1\|4995285_4996653_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180401
CP026674.1\|AVD89951.1\|4990382_4991450_+\|peptidase-M42	unknown	unknown	gnl\|CDD\|349907
CP026674.1\|AVD89948.1\|4988306_4988789_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377163
CP026674.1\|AVD89967.1\|5008303_5010853_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225461
CP026674.1\|AVD89955.1\|4993683_4993947_-\|hypothetical-protein	unknown	unknown	unknown
CP026674.1\|AVD89966.1\|5006527_5008177_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|235730
CP026674.1\|AVD89960.1\|4998937_5000260_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|223080
CP026674.1\|AVD89961.1\|5000448_5001477_+\|spermidine/putrescine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270307
CP026674.1\|AVD89964.1\|5003509_5005000_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
CP026674.1\|AVD89962.1\|5001550_5002348_-\|3-oxoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|180440
CP026674.1\|AVD89953.1\|4992221_4992620_-\|response-regulator	unknown	unknown	gnl\|CDD\|381145
CP026674.1\|AVD89952.1\|4991446_4991905_+\|DNA-methylase	unknown	unknown	gnl\|CDD\|238013
CP026674.1\|AVD89950.1\|4989893_4990076_+\|hypothetical-protein	unknown	unknown	unknown
CP026674.1\|AVD89963.1\|5002526_5003513_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
CP026674.1\|AVD89949.1\|4989157_4989418_-\|hypothetical-protein	unknown	unknown	unknown
CP026674.1\|AVD89959.1\|4998011_4998905_+\|acetylxylan-esterase	unknown	unknown	gnl\|CDD\|223999

Protein	Function_ID	Function_description	E-value
CP026674.1\|AVD89954.1\|4992767_4993565_-\|ketoacyl-reductase	gnl\|CDD\|187602	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR. This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	4.46725e-66
CP026674.1\|AVD89958.1\|4996877_4997759_-\|phytanoyl-CoA-dioxygenase	gnl\|CDD\|368580	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH). This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins, ectoine hydroxylases and a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalyzing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterized by the accumulation of phytanic acid in plasma and tissues.	2.81925e-30
CP026674.1\|AVD89956.1\|4994331_4995120_-\|short-chain-dehydrogenase	gnl\|CDD\|187602	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR. This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	3.64403e-66
CP026674.1\|AVD89957.1\|4995285_4996653_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180401	PRK06105, PRK06105, aminotransferase; Provisional.	0
CP026674.1\|AVD89951.1\|4990382_4991450_+\|peptidase-M42	gnl\|CDD\|349907	cd05657, M42_glucanase_like, M42 Peptidase, endoglucanase-like subfamily. Peptidase M42 family, glucanase (endo-1,4-beta-glucanase or endoglucanase)-like subfamily. Proteins in this subfamily are co-catalytic metallopeptidases, found in archaea and bacteria. They show similarity to cellulase and endo-1,4-beta-glucanase (endoglucanase) which typically bind two zinc or cobalt atoms. Some of the enzymes exhibit typical aminopeptidase specificity, whereas others are also capable of N-terminal deblocking activity, i.e. hydrolyzing acylated N-terminal residues. Many of these enzymes are assembled either as tetrahedral dodecamers or as octahedral tetracosameric structures, with the active site located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers.	5.45872e-74
CP026674.1\|AVD89948.1\|4988306_4988789_+\|hypothetical-protein	gnl\|CDD\|377163	pfam03928, Haem_degrading, Haem-degrading. Haem_bdg is a bacterial protein that is up-regulated in response to haemin- and peroxide-based oxidative stress. It interacts with the SenS/SenR two-component signal transduction system. Iron binds to surface-exposed lysine residues of an octomeric assembly of the protein.	2.0352e-23
CP026674.1\|AVD89966.1\|5006527_5008177_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|235730	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.	0
CP026674.1\|AVD89960.1\|4998937_5000260_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|223080	COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism].	1.02323e-143
CP026674.1\|AVD89961.1\|5000448_5001477_+\|spermidine/putrescine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270307	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic binding domain that serves as the primary high-affinity receptor of an uncharacterized ABC-type polyamine transporter from Rhodopseudomonas palustris Cga009 and related proteins from other bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	9.25103e-73
CP026674.1\|AVD89964.1\|5003509_5005000_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	3.79793e-84
CP026674.1\|AVD89962.1\|5001550_5002348_-\|3-oxoacyl-ACP-reductase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	6.53035e-77
CP026674.1\|AVD89959.1\|4998011_4998905_+\|acetylxylan-esterase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	1.62439e-18
CP026674.1\|AVD89952.1\|4991446_4991905_+\|DNA-methylase	gnl\|CDD\|238013	cd00056, ENDO3c, endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases.	4.4651e-06
CP026674.1\|AVD89965.1\|5005041_5006205_-\|alcohol-dehydrogenase	gnl\|CDD\|341472	cd08193, HVD, 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.	0
CP026674.1\|AVD89963.1\|5002526_5003513_-\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	6.37116e-71
CP026674.1\|AVD89953.1\|4992221_4992620_-\|response-regulator	gnl\|CDD\|381145	cd18161, REC_hyHK_blue-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinase/response regulators similar to Pseudomonas savastanoi blue-light-activated histidine kinase. Typically, two-component regulatory systems (TCSs) consist of a sensor (histidine kinase) that responds to specific input(s) by modifying the output of a cognate response regulator (RR). TCSs allow organisms to sense and respond to changes in environmental conditions. Hybrid sensor histidine kinase (HK)/response regulators contain all the elements of a classical TCS in a single polypeptide chain. Pseudomonas savastanoi blue-light-activated histidine kinase is a photosensitive HK and RR that is involved in increased bacterial virulence upon exposure to light. RRs share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	9.08061e-09
CP026674.1\|AVD89967.1\|5008303_5010853_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225461	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription].	2.6555e-63

>CP026674.1|AVD89957.1|4995285_4996653_-|aspartate-aminotransferase-family-protein
MPLNPLAQKDIDYHLHSYTDARAHQEKGPLIIERGEGVFVIDDQGNRYLEAMAGLWSTALGFSEQRLVDAAHRQLQTLPFYHTFSHKSHPASIALAEKLIALAPVPMSKVYFTNSGSEANDVLVKLVWYRNNAIGQPLRKTFISRQGAYHGVTGLSASLTGLASVHQGFDLPLPGFLHVSTPHFYRHGLPGETEEQFADRLADELEALISREGAHTIAAFVAEPLMGAGGVIVPPRTYWEKIQQVCRRHDVLVIADEVICGFGRTGKLFGCETFGIQPDAMVLSKQLSSSYQPIAAVLINDALYQGIADQSHAQGALGTGFTASGHPVAAAVALENVRIIETDQLVAHAARMGTLLHAGLAALRAHPLVGDVRGCGLIAGVELVRDPASKVAVESVGRLGKFFTAQAQVNGLIVRGIGDTVALCPPLIINEAEIALLLERFTLTLEQTQASAAMA
>CP026674.1|AVD89956.1|4994331_4995120_-|short-chain-dehydrogenase
MTQEFAGKVVVISGGSRGIGFGIAAAFAERGAQTVLAASSEDNLRAAADKIEKSGGLRPDTCAADLRTDTGCQQVYEGVAARFGRCDILVNSAGATRAGAFLELPTDAWQDGFALKFFGCVNLCRLFWPLLRTAGGHVVNIIGGAARTPDPGFLIGGSVNAAMHNFTKGLSGQGKLEGVNVNAIHPGLTETDRVEQLFKQRAATSGKTVDQERTAQVEREGLVRLGKPEDVAQLAVFLCGEQARHIQGTAIAVDGGGTPGVY
>CP026674.1|AVD89955.1|4993683_4993947_-|hypothetical-protein
MAHSLCPFFNGPHNFQPEVELPGIGHTDVQTDSSSDLIRAEIENAEPILKALDARLEAVEFDPLLASCVDAASAEVVQATSHGARGR
>CP026674.1|AVD89954.1|4992767_4993565_-|ketoacyl-reductase
MDLGITGRVALITGASGGIGQATARLLSEEGVLLVLTDRDEGALQAAFANLPGERLLVAADVTNQQAVNQVVADGESLFGKIDIVVHTAGVTGAKGDPLELSDADYEEAWQTDFFSSVRVARATIPRMRSRGWGRFVCITSENAAQPYYDEAVYNVAKAALAAWVKNLSYKEAEHGVLCNTVAPAFIETGMTNDMMRKRAEKLGVSFEQAVESFLKEERPGIVQQRRGQPEEVAAVIALLVSHRGSFINGSNVRVDGGSVQAVQQ
>CP026674.1|AVD89953.1|4992221_4992620_-|response-regulator
MMNSSLNSFRLEGDIVVVEDDPLLRRLMGDILADLSDTCHSFQNCDDALVYLLQSGGCAAVVADHDVPGQLHGAEFLGMVAEKRPGTATVLMSGFALEDIPVKPGIVCLAKPWSAESLIRALESFAEPVTDT
>CP026674.1|AVD89952.1|4991446_4991905_+|DNA-methylase
MIAITAADLGIDINEPGGNGLFKWLLASFLIGKRIRTSVAVKAFHRLVDQERVGTPEQLAKRSHAQLVRWLGEAGYARYDESTARRLRVLGQRVSEELQPQLRALGTGVHRVADFEQWLLSFEGVGPKTVEIFMREAAETLNDASADLLMPS
>CP026674.1|AVD89951.1|4990382_4991450_+|peptidase-M42
MHPTQLLEELLHARAPGGEEEEVRVICERELREYCDETWVDDAGNLIGLIRADNAPTEQAQAARSGMLIMAHLDEIAMAVRTINVDGSLQVTALGGANPVNFGMCPVDILGGAAVLPGVLSFGSMHLTRQSPQGADVQDGNVHWRDVHVVTRQSRRQLEEQGIRAGTRVVLSQHWRKPFYFQDAIGAHFMDDRAPVTAVLQAAAMVARTRSRLPQDTYFAFTTMEEETNAGALFAAHHLPCRTAVAVEVGPIATEYGTELSENPIVVVGDEKGHYTRSVTDALIAATQQACYTPQSALLVDFTSDASAILAVGALGRAGCIAIPTENTHGFEVVLPAGIEACAKCLTRFLMQGQT
>CP026674.1|AVD89950.1|4989893_4990076_+|hypothetical-protein
MKTTRLIGLACCVFMLHGCFNETDHPAQGADRGKASVQMQKPNAPTGEATPAGEPGKANQ
>CP026674.1|AVD89949.1|4989157_4989418_-|hypothetical-protein
MIDWVQWPAMAVTIFAAWFTGSTQARRRIIGFWCFILSNALWVIWGWHDHAYALIALEVALGAMNLRGFKKNLGMRQDGDKDASRR
>CP026674.1|AVD89948.1|4988306_4988789_+|hypothetical-protein
MKTLCKKTAAAVAAALLLTGFATEASAITTVPVLQDSDVQKIVDAAKKSMALNHTKGCIAVADADGQLLFMQRQEGSAPDCLESAEAKVRTAARFQETTNTFYKMLNQNKLVTVAVPGMAPLPGGEPIRYNGVVIGSVAVSTPDGELDLKVVADALAAIQ
>CP026674.1|AVD89958.1|4996877_4997759_-|phytanoyl-CoA-dioxygenase
MSATEVQAPAKMREVPSGTSPEIVKRIIDEDGGVIIKGLFKDQVDRFNADMDPIVAGWAAGYDGPDWMAEFAGKKTKRITQLIRRSKTFREEMLDHEVMLSYIDTLMLETSDAYWMNAAQIIEIQPGEKAQFLHRDLENYPVFRNYGPSGPEVMCNCIIAISDYTEEMGATRVIPGSHKWPDYNDRERMDNTPSIAAVMEKGDAMVFSGKVVHGGGANVSDRPRRALTLAFCPGWLVPEEAYPFAVPMEMARTLSKRAQQMIGFRSMHNQKLGGGTLWSLDYVELAKVLELDK
>CP026674.1|AVD89959.1|4998011_4998905_+|acetylxylan-esterase
MRTDISFKTTDGLTLKGWLFTPQNGASRHPAIVMAHGFTAVKEQYLDRYAEVFAAQGFAVLVYDNRNFGASEGQPRQEADPLLQVRDYRDAITYVSSLDDVDAARIGIWGSSYSGGHVLQVAAFDRRVKCVSSQVPAISGSADVRMAVRPDLMPGLIEAFEADRAARYAGDHALVMEVVNEDPKSDCALPGQDCFDFFTGSQRSVAPAWRNEVTLKSIEMLNEYEPGYAVDRISPTPLQMIVALKDTVTVPDAALKAYESALQPKNLVLLKCGHFDPYLSEFEASSTAAVEWFKRHL
>CP026674.1|AVD89960.1|4998937_5000260_+|glutamate-1-semialdehyde-2,1-aminomutase
MSAKWPENHSQSKTLYDRASKVMPGGITRILPWQEPFPVYAGSGSGAYVTDVDGTRRLDLLNNFASLIHGHAHPAIVAAIQEQVTKGTAFTLPTEPEVVLAETICSRAESFEWIRFSNSGTEAVMCAIKAARALTGRSKIVKCEGVYHGSYDYAEVSLDSSPENWGVDPTSTGYSKGVPDGVKNDVVVIPFNDAEAAERIILANRDDIAAIIIDPAPSYFGFVPVSQAFIEMIRRVSTEIGAVFILDEVITFRVHSGGAQTRFNIKPDLTVLAKIIGGGFPVGAVAGSRKFMQVFDHREGKPLLPWSGTFTANPITMTAGKIALDLYTQAESDRMDVLGDRLRAGVTRAFANAGFPGQVTGFSSMFMVFGHQRQVQDYRSGYSSKEEMKWVSALQRNLVLEGYHIAKTGKAFLSTVMTVEDVDGFIEATERAAKLAVAQR
>CP026674.1|AVD89961.1|5000448_5001477_+|spermidine/putrescine-ABC-transporter-substrate-binding-protein
MLLKTTTAALAGLIAAQAVAADDLTVVSFGGANKVAQIKAFYAPWEQHSSSKVIAGEYNGEMARLKVMVDSRSVGWDVVEVELPELARGCDEGLFESLPEELFGSPSHYVSGAIQPCGVAFFIWSTVLAYNADKLTVAPTGWADFWDLRKYPGKRGLRKTAKFTLEFAWMADGVRPAEVYQILATKAGQDRAFVKLDQIKPFIEWWEAGAQPAQYLMSGDVVMSAAYNGRISAAQKESSLKVVWAGGIYDFDARAIPKGSKNVEAAKRFINFTLEPAQQQRFAQAIAYGPANLEAISQLDKSILEGLPTAEDHISQQVQNSTPFWADYGETLEQRFNAWVAK
>CP026674.1|AVD89962.1|5001550_5002348_-|3-oxoacyl-ACP-reductase
MRFNKKVAIVTGSSSGNGRAIALALAAEGAQLVCSDLSKSARPEGFEKDLHIDTDDLIRQNGGEAIFVKANVSSYTDMDNLVQEAVKRFGRLDIMINNAGVAVELKTIVEETEADYDLTMNVNTKGTWLGCKFAITQMMKQEVSDSGTRGKIVNISSIGGLVGLAQEASYCASKGAVNNLTRQLAVDFAQHKINVNAVCPGFLATAMVRQELNDPEIKTLLEDLTPWPRIGNVEDVSKAVTFLASEDAQWMTGSLLTVDGAYTAQ
>CP026674.1|AVD89963.1|5002526_5003513_-|alpha/beta-hydrolase
MSDLIAQAIPLEQVAADAVGLVQAFRDGGEISFQDVPLAQARDNYLKACAVNGLAAERVAEVRTLDYPVTGGTASLRVYRPLGIPTAAVTPVVVFIHGGGWVIGNLDSHDSICRSLANRTHATVIAVQYRLAPEHRFPVPLDDCFAAIEYITDKACELGVDPKRTLLAGDSAGGNMATVLANDPACQALGMTFKGQALFYPVTDLTASQPSYQRITRGFPLTAASMHWFRAQYTAPGEDWHDARLSPLLHAEGRRQPPLFILTVGHDPLADEGIAYASAAARAGTEVEHQHLPWHAHGVLTSAGKIATGHRILTQAARFIARKLGTDN
>CP026674.1|AVD89964.1|5003509_5005000_-|NAD(P)/FAD-dependent-oxidoreductase
MLNTAQKPYDIVILGAGFGGLGMGAQLKMQGIDNFIILERGARIGGVWRDNAYPGAACDTESHLYCYSFHPHLRVSKMYADRDELLNYMDSLANRYALMQHVKLNSELSQANWDEQTNTWAFELADGTQVQGRFFVPAWGQLNKPAIPAFKGLDSFAGDYFHSAQWPEGLDLTGKKVASIGAAASAVQYVPEVAKQASHLTVFQRSANWIMPRNQIVFTPEQLDAYAADPSLFEESRRNLHAFRENGFARTRHGTEAQQEGIAMATGHLAAQVPDAALRAKLTPDYEFACKRILRSDDYYPALMRSNVSLETAAVDHFVPEGIVDKNGLLHELDTVIFGTGFESQAFQGDLQVTGAQGQTLHQRWEQGAEAYLGMTVPGFPNMFMIYGPNTNLNHNSIITMLEIQQRYIIQAVQGLADNPHTALDVKVDNFNTYNDSLQTNMQSSAFSSDCSSWYKNAAGKVINNWSGTVDEYKALAADWNLDDYHLLSAKETAHP
>CP026674.1|AVD89965.1|5005041_5006205_-|alcohol-dehydrogenase
MSIFKPFTFDTVGSIVAEWGAARRLGELLGAWTEQRNLLIVTDKFLHTAGLLDAAKASLQAAGFSISVFDDVVADPPEAVLHDCVGQARAAGVNLVLGLGGGSSMDIAKLAAVLIPSQQALADLYGIGKVKGTRLPLVQIPTTAGTGSEVTNITILTTGETTKMGVVSNQLYADKVILDAELTTGLPPLITAATGIDAMVHAIEAYTSRHRKNPVSDALAREALRLLAGNLVTACEDGKNRLAREAMLLGATLAGQAFANAPVAAVHALAYPLGGHYHIPHGLSNALMLGPVLRFNLSAAAPLYAELGDVLLGPSTTTITSRATRFVEFMENLMNQSGAPRRLRDVKVTEDSLALLAHDAMKQERLLMNNPVEVREADALALYKKAF
>CP026674.1|AVD89966.1|5006527_5008177_+|long-chain-fatty-acid--CoA-ligase
MTLPHQPKFLPATASCKPSPLLIGGLLETGLRAAGDNQIVYRNQVRHDYTTFHRRVHQLAHALSALGVVAGDTVAVLDWDSHRYLECFFAIPMLGAVLHTVNVRLAPEQVQFTMAHAEDTLVLAHRDFIPLLETIAGQLPMVRGYLLCEDDGGAVPTSLPVLGEYEALLAAQPGHYPFPEFDENAVATLFYTTGTTGNPKGVYFTHRQLVLHTLAGASAHASAGAALLNRDKVYLPITPMFHVHAWGVPYIATMMGCQQVYPGRYEAGLLASLIVDERVDYSHCVPTLLAMVLDAAQASGADLSGWHVLIGGAALSAGLARRAQGMNVDVRGAYGMSETCPIVSLTCLPAEFSELQAEQQLHWRCSAGVIAPLVQMKLVDEHQQPVAQDGQQVGQLLIRSPWLTPGYFKDPINSERLWEDGWLHTGDVASIDARGLVHIHDRLKDLIKTGGEWISSLDIESLISRHPHVSECAVVGVPDARWGERPVALLVQAAASPPLDAEALKVHLTGFVAQGALSKWAIPTEVRVVAAIPRTSVGKLDKKLIRAQF
>CP026674.1|AVD89967.1|5008303_5010853_+|helix-turn-helix-transcriptional-regulator
MAQIAAALQGDATLVLLRAPLGYGKSLLLSQLAEQRGAALGFLRIDRADNDPVHFIGHLYHLLLKRAVPVDMDKDQAWAAIRSHLDGLVAPFTLCLDDLHLLRSARVVGYLEALLHQPPPYLHLVAASEGAPALGLSHLRRDNRLRLLGPRELALDGEETQQVLLAQGVSLQPAFVYRLQAGSEGWISGVLFWCSAYRELPLLDPSAEHLELAVQGSYQHIGEFIEEDVLRCLPQALVRFIEHTSVVSAFDLELATVLTEDTQVEAPLRKLLQLDLFIEERMGERLRYQYHPALRLTVLQRLRRRRPERLLQLHQRAADWLLANAFYAQAVSQYGRAKNTEALMRTVEQHTFDLLREGEINAIVDFLGHALRDSETDHLNLAMTEASALIVTNDIQRTRACIGVLKRLGGPSVERVMQTIAFLRSHLAWLGGNLRHGVDVARIALERYPQANAATAILHANSAACLAALGRLEDARLQNDQALQQLSALGFKGYTHRLHLQAGLIELAQGKTEQARQRFFEGGLAPGAGNFYDAFLHLGQGLVLMQRNALSAAALSLARAEKIAMDFPHGAALAQIFHYQACLFDALGDAPRAVAKWDQARRLAQDFGQWRVYRLAGAWRVRHAVRHGDQAFLLSWLHEWHWCNRQYGEDLQPDELLAYAWVQRHLGQRAVVNQRVQALGELAREHQHHRLRLDIVLLQASVALDQHDQPQAMHLLDEAVALACEHQFGHLLHYEGAALSDLFQQLLAPEARKQYELQRALPDARQLQQWLPSLVNPLQSAQRLIEPVTRREREVLQRMARGQGNAQIAESLFVSLSTVKTHINNLFRKLEVNDRDEALRKARSVGLLS

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Crispr_ID: CP026674_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026674_5

5647121-5647195

Orphan

Consensus_repeat	Method
TGTTAAGTTCAAGTTGCTCGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026674_5

>merge|CP026674|5|5647121-5647195|CRISPRCasFinder
TGTTAAGTTCAAGTTGCTCGGGTGGCAGAGGACGATTGGCAGACCTGCGACTGTTAAGTTCAAGTGGCTCGGGTG

>CP026674|5|5|5647121-5647195|CRISPRCasFinder
TGTTAAGTTCAAGTTGCTCGGGTG	GCAGAGGACGATTGGCAGACCTGCGAC
TGTTAAGTTCAAGTGGCTCGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
CP026674.1\|AVD90492.1\|5643778_5644789_-\|NADH-oxidase	unknown	unknown	gnl\|CDD\|99805
CP026674.1\|AVD90494.1\|5645343_5646702_-\|benzoate-1,2-dioxygenase-large-subunit	unknown	unknown	gnl\|CDD\|132273
CP026674.1\|AVD90491.1\|5642857_5643619_-\|1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate-dehydrogenase	unknown	unknown	gnl\|CDD\|183772
CP026674.1\|AVD90489.1\|5640323_5641445_-\|muconate-cycloisomerase	unknown	unknown	gnl\|CDD\|239434
CP026674.1\|AVD90490.1\|5641474_5642803_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273327
CP026674.1\|AVD90499.1\|5652753_5654109_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379933
CP026674.1\|AVD90488.1\|5639912_5640203_-\|muconolactone-delta-isomerase	unknown	unknown	gnl\|CDD\|213786
CP026674.1\|AVD90502.1\|5657565_5658087_-\|acyloxyacyl-hydrolase	unknown	unknown	gnl\|CDD\|378181
CP026674.1\|AVD90500.1\|5654289_5655180_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|236871
CP026674.1\|AVD90485.1\|5636290_5637541_-\|outer-membrane-porin,-OprD-family	unknown	unknown	gnl\|CDD\|335381
CP026674.1\|AVD90498.1\|5651783_5652575_-\|histidinol-phosphatase	unknown	unknown	gnl\|CDD\|238819
CP026674.1\|AVD90486.1\|5637615_5638815_-\|benzoate-transporter	unknown	unknown	gnl\|CDD\|281578
CP026674.1\|AVD90926.1\|5658284_5659031_-\|dioxygenase	unknown	unknown	gnl\|CDD\|227609
CP026674.1\|AVD90496.1\|5650608_5650908_+\|hypothetical-protein	unknown	unknown	unknown
CP026674.1\|AVD90501.1\|5655336_5657478_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
CP026674.1\|AVD90925.1\|5649065_5649797_-\|hypothetical-protein	unknown	unknown	unknown
CP026674.1\|AVD90493.1\|5644861_5645347_-\|benzoate-1,2-dioxygenase-small-subunit	unknown	unknown	gnl\|CDD\|132276
CP026674.1\|AVD90495.1\|5647803_5648760_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
CP026674.1\|AVD90487.1\|5638958_5639873_-\|catechol-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|274134
CP026674.1\|AVD90497.1\|5651416_5651653_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP026674.1\|AVD90492.1\|5643778_5644789_-\|NADH-oxidase	gnl\|CDD\|99805	cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.	2.03173e-140
CP026674.1\|AVD90494.1\|5645343_5646702_-\|benzoate-1,2-dioxygenase-large-subunit	gnl\|CDD\|132273	TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13). [Energy metabolism, Other].	0
CP026674.1\|AVD90491.1\|5642857_5643619_-\|1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate-dehydrogenase	gnl\|CDD\|183772	PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional.	0
CP026674.1\|AVD90489.1\|5640323_5641445_-\|muconate-cycloisomerase	gnl\|CDD\|239434	cd03318, MLE, Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.	0
CP026674.1\|AVD90490.1\|5641474_5642803_-\|MFS-transporter	gnl\|CDD\|273327	TIGR00895, transport_protein, benzoate transport. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	6.99965e-103
CP026674.1\|AVD90499.1\|5652753_5654109_+\|hypothetical-protein	gnl\|CDD\|379933	pfam17164, DUF5122, Domain of unknown function (DUF5122) beta-propeller.	0.000240419
CP026674.1\|AVD90488.1\|5639912_5640203_-\|muconolactone-delta-isomerase	gnl\|CDD\|213786	TIGR03221, muco_delta, muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol. [Energy metabolism, Other].	4.68579e-54
CP026674.1\|AVD90502.1\|5657565_5658087_-\|acyloxyacyl-hydrolase	gnl\|CDD\|378181	pfam09411, PagL, Lipid A 3-O-deacylase (PagL). PagL is an outer membrane protein with lipid A 3-O-deacylase activity. It forms an 8 stranded beta barrel structure.	5.97457e-33
CP026674.1\|AVD90500.1\|5654289_5655180_+\|universal-stress-protein	gnl\|CDD\|236871	PRK11175, PRK11175, universal stress protein UspE; Provisional.	2.86903e-32
CP026674.1\|AVD90485.1\|5636290_5637541_-\|outer-membrane-porin,-OprD-family	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	0
CP026674.1\|AVD90498.1\|5651783_5652575_-\|histidinol-phosphatase	gnl\|CDD\|238819	cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases. These enzymes may dephosphorylate fructose-1,6-bisphosphate, inositol monophospate, 3'-phosphoadenosine-5'-phosphate, or similar substrates.	3.91341e-119
CP026674.1\|AVD90486.1\|5637615_5638815_-\|benzoate-transporter	gnl\|CDD\|281578	pfam03594, BenE, Benzoate membrane transport protein.	5.4621e-147
CP026674.1\|AVD90926.1\|5658284_5659031_-\|dioxygenase	gnl\|CDD\|227609	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism].	2.92486e-16
CP026674.1\|AVD90501.1\|5655336_5657478_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	8.96705e-92
CP026674.1\|AVD90493.1\|5644861_5645347_-\|benzoate-1,2-dioxygenase-small-subunit	gnl\|CDD\|132276	TIGR03232, benzo_1_2_benB, benzoate 1,2-dioxygenase, small subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family should all act on benzoate, but several have additional known activities on various benozate analogs. Some members actually may be named more suitably according to such alternate an activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).	5.70889e-104
CP026674.1\|AVD90495.1\|5647803_5648760_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	7.69854e-22
CP026674.1\|AVD90487.1\|5638958_5639873_-\|catechol-1,2-dioxygenase	gnl\|CDD\|274134	TIGR02439, Catechol_12-dioxygenase_1, catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol. [Energy metabolism, Other].	1.21149e-170

>CP026674.1|AVD90494.1|5645343_5646702_-|benzoate-1,2-dioxygenase-large-subunit
MSLGFDYLNAMLEDDREKGVYRCKREMFTDPRLFDLEMKHIFEGNWIYLAHESQIPEKNDFLTLTMGRQPIFIARNKDGELNAFLNACSHRGAMLCRHKRGNRSSYTCPFHGWTFNNSGKLLKVKDPSNAGYPDSFNCDGSHDLTKVARFESYRGFLFGSLNADVKPLVEHLGESAKIIDMIVDQSPEGLEVLRGASSYIYEGNWKLTAENGADGYHVSSVHWNYAATQNQRKQRESGEEIKTMSAGSWAKQGGGFYSFDHGHLLLWTRWANPEDRPAYERREQLAADFGQARADWMIENSRNLCLYPNVYLMDQFSSQIRIARPISVNKTEITIYCIAPKGESADARAKRIRQYEDFFNVSGMATPDDLEEFRSCQTGYGGGIGWNDMSRGAEHWVEGADDAAREIELKPLLSGVRTEDEGLFVLQHKYWQETMLKALEQEQRLIPVEAVQ
>CP026674.1|AVD90493.1|5644861_5645347_-|benzoate-1,2-dioxygenase-small-subunit
MSLHDTVRDFLYREARYLDDAQWDLWLELYAADVTFWMPSWDDDDTLTEDPQSEISLIWYGNRGGLEDRVFRIKTERSSATVPDTRTSHNISNIEIVEQGEGSCQVRFNWHTLSFRYKTTDSYFGTSFYTLDLCGEQPLIKAKKVVLKNDYVRQVIDIYHI
>CP026674.1|AVD90492.1|5643778_5644789_-|NADH-oxidase
MSFQIALNFEDGVTRFIEASGHETVADAAYRQGINIPLDCRDGACGTCKCKAESGQYDLGDNFIDDALSEDEIAEGYVLTCQMRAESDCVVRIPASSQVCKTEQASFEAAISDVRQLSESTIALSIKGESLSRLAFLPGQYVNLKVPGSDQSRAYSFSSLQKDGEVSFLIRNVPGGLMSSFLCGLAKAGDSMSLTGPLGSFYLRPIQRPLLLLAGGTGLAPFTAMLERIAEQGSAHPLHLIYGVTNDFDLVELDRLQALAARIPNFTFSACVANPQSQYPRKGYVTQHIEPRHLNDGDVDVYLCGPPPMVEAVSQYIREQGITPANFFYEKFAAAA
>CP026674.1|AVD90491.1|5642857_5643619_-|1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate-dehydrogenase
MNNRFQGKVALVTGAAQGIGRGVCWRLKAEGAQVVAVDRSELVHELAGEGMLTLTADLEQYSDCARVMASAVETFGRLDILINNVGGTIWAKPFEHYEVEQIEAEVRRSLFPTLWCCHAALPYMLERASGAIVNVSSIATRGVNRVPYGAAKGGVNALTACLAFETAGRGIRVNATAPGGTEAPPRRVPRNSAEQSEQEKVWYQQIVDQTLDSSLMKRYGSIDEQVGAILFLACDEASYITGVTLPVGGGDLG
>CP026674.1|AVD90490.1|5641474_5642803_-|MFS-transporter
MRTLDVQPIIDNARFTPFHWMVMAWCGLLLIFDGYDLFIYGVVLPVIMKEWGLTPLQAGALGSYALFGMMFGALVFGSLADRIGRKKGIAICFALFSTATILNGFASSPSEFGIYRFFAGLGCGGLMPNAVALMNEYAPKRLRSTLVAIMFSGYSLGGMLSAGVGIFMLPRLGWASMFFAAAVPLLLLPVILHYLPESIGFLVRKGRTEQARALLKRLDPSCDVQPDDVLQAHDRNGKGASVVALFRDGLAVRTLALWLAFFCCLLMVYALSSWLPKLMANAGYSLGSSLSFLLALNFGGMAGAILGGWLGDRFNLVKVKVAFFIAAAVSISLLGVNSPMPVLYLLIFIAGATTIGTQILLYAGAAQLYGLSVRSTGLGWASGIGRNGAIVGPLLGGALMGINLPLQLNFIAFAIPGAVAALAMAVHLASGRRDGIAAPAQA
>CP026674.1|AVD90489.1|5640323_5641445_-|muconate-cycloisomerase
MTSPIIERLEAIIVDLPTIRPHKLAMHTMQHQTLVVLRLRCSDGVEGIGEATTIGGLAYGYESPEGIKANIDAHLAPALIGLPADNINSAMLKLDKMAKGNTFAKSGIESALLDAQGKRLGVPVSELLGGRVRDSLEVAWTLASGDTARDIAEAEHMLQVRRHRVFKLKIGANPLEQDLKHVVAIKRELGERASVRVDVNQYWDESQALRACQVLGDSGIDLIEQPISRINRRGQVRLNQRSPAPIMADESIESVEDAFSLAADGAASVFALKIAKNGGPRAVLRTAQIAEAAGIALYGGTMLEGSIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIVNEPPQYHDFQLHVPRAPGLGLSLDEQRLARFARR
>CP026674.1|AVD90488.1|5639912_5640203_-|muconolactone-delta-isomerase
MLFHVKMTVKLPVDMDPAKAAQLKADEKELAQRLQHEGTWRHLWRIAGHYANYSVFDVPSVEALHDTLMQLPLFPYMDIEVDGLCRHPSSIHSDDR
>CP026674.1|AVD90487.1|5638958_5639873_-|catechol-1,2-dioxygenase
MTVKISHTAEIQKFFEEAAGFGNDDGSPRLKRIIQRLLHDTARLIEDLDITDDEFWLAVDYLNRLGGRGEAGLLVAGLGIEHFLDLLQDAKDAEAGLLGGTPRTIEGPLYVAGAPIAQGEVRMDDGSEEGVATVMFLEGQVLDPQGQPLPGATVDLWHANTKGTYSFFDQSQSAYNLRRRIITDAEGRYRARSIVPSGYGCDPQGPTQECLDLLGRHGQRPAHIHFFISAPGHRHLTTQINLAGDKYLWDDFAYATRDGLVGEVVFHESAEGRHAELKFDFQLQKATDNDAEQRSGRPRALQQG
>CP026674.1|AVD90486.1|5637615_5638815_-|benzoate-transporter
MKDLFKDCSMSAIVAGCIATLISYAGPLVIIFHAAEAATLSHGLLSSWVWAVSMGSAVLGGVLSLRYRVPVVIAWSIPGAALLVTALPQLGIEQAVGAYLVANLFLLLIGMSGAFDRIIAHLPGSIAAGMQAGILFSFGTEVFRALPTQPVLVLAMFVTYLLMRRVQPRYAVAAVLCVGAAVTVASGAFRSEALVLQLATPQWITPQFSLPAVFSLALPMALVALTGQFMPGMAVLRTAGYSTPASPLISASALGGALLAPFGCHGLNLAAVTASLCTGHEAHEDPRRRYVAAVCGSVLYLLLGIAGATLMSLFAAFPAALIAALAGLALYGAISEALARSLAEPVERDAGLFTFLVTASGVSFLGLSAAFWGLLFGLLAHALLRWRRPQVLGALRRNP
>CP026674.1|AVD90485.1|5636290_5637541_-|outer-membrane-porin,-OprD-family
MNHTPCVALGLTLLSQPLLAADGGFFEDAKATLSARNYYFSRDFSDIVGANQQSKAEEWAQGFILDFKSGYTPGTVGLGVDALGLLGIKLDSSPDRVNTGLLPVQGDGRAADEYSRLAPTFKARLSKTELRVGELQPNLPVLTFSDIRLLPPTYQGMSLSSAELDGLTVQAGHLSSSHLRNEAGDGKMNAMLGHVPQRQAQSDAFNYAGGDYAFNANQSSVSLWYGQLQDIYEQGFVGLKHSKPLGDWVLSANLGYFTAHEDGDALLGNIDNQAFFSLFTARRGGHSFHVGYQGIYGDSPFPRVFANVSPLGNEVPTYEFASTDERSYQVRYDYNFAAMGIPGLTATVRYITGDNVDTGRDYEGRDRERDLDLGYAVQSGVFKGLGIRLRNAMARSNYRSDIDENRVTLVYTWQLF
>CP026674.1|AVD90495.1|5647803_5648760_-|AraC-family-transcriptional-regulator
MESRLLSERSSVFHHADPYAVSDYVNQHVGHHCIGLSRTTHPQASLSHRKFAELDLCRISYGGSVRVTSPALETIYHLQVLLNGNCLWRGHQREHHLVPGELLLINPDDPVDLTYSEDCEKFILKVPTHLLDSICAEQRWQRPDGGVRFLRNHYRLEELDGFVNLMAMVCHEAEVSDSLPRVQSHYSQIVASKLLTLMSTNIRRESLSAPQAGLERILDYIERNLKLELSAEALAEQACMSLRSLYTLFDKHLGTTPKHYVRQRKLERVHACLSDPTCSVRSVTEVALDYGFLHLGRFSEVYRQQFGELPSQTFKRRG
>CP026674.1|AVD90925.1|5649065_5649797_-|hypothetical-protein
MVVRKTQFLRRLLLAGTLMSLGACTQQQGRDIVSQLGDGKPSELFQTSVDRLATLSMRDNLQSLYLLMNKLYLRNPNQVKLSGYLDAATAERQIRHAIEQRQPLAQLGNRRDLAALSYALSPEFRGDRVGAFIYAIGSMLITAHGGRTAFYMTDTIDPLFINNAARNIEKATWMLSQRQDANGVLLLFSNEISEEGSNLSFAVEFGKIVARLDLLAELLDERYRRIGLNYAQSLLLMNFLPVQ
>CP026674.1|AVD90496.1|5650608_5650908_+|hypothetical-protein
MRREVTGMDARQALRPRRGRSARSSRSKPGAREPRSAAQGPDDRSQTFLVTFWGVCQKVTRCKSGKVIERRLGKWICSRIQKPKLQTSKHRFKGGIQIA
>CP026674.1|AVD90497.1|5651416_5651653_+|hypothetical-protein
MRREVTGMDARQALRPRRGRSARSSRSKPGAREPRSAAQGPDDRSQTFLVTFWGVCQKVTRCKSGKVIERRLGKWICS
>CP026674.1|AVD90498.1|5651783_5652575_-|histidinol-phosphatase
MSLSVEQIGEFRAFAEQLADAAALAIKPYFRASLDVEDKGGRLYDPVTVADKAAEDAMRELIQARYPEHGILGEELGTALGSSPLHWVLDPIDGTRAFITGLPLWGTLIALNDGSRPVVGVMNQPFTGERFVGTPEGAWGNKTLLKTRACSDLASATLMCTTPDMFDIPARKAAFEAVAGKARLMRYGGDCYAYCMLASGFVDVIVEASLQPYDVQALMPIIEGAGGVITAWDGSSAQHGGCVVACGDPKLHAQVLEMLRYAM
>CP026674.1|AVD90499.1|5652753_5654109_+|hypothetical-protein
MNTNEGAGYLDKSYGNQGEASVPPLPPKNPDKETLQVYPYTSADDGSMVFYGYDTDDVTTREKGVFTRLGADGQWDEATGHVEVSKKQSSPLPYEVFNFNAMTFAKYKNEERYLAASTVIYAGDTDKAAVHVAVGAYDRTFSPVAGFGDDGIALPSPPFKKENTLLPEALVKTLGYNEFQKAVDYRYKPKLALIDDRIITVFPGSVATWEAQDDDLWCALLDAATGAPVPGLGEDGKSSQLKLPRINGQALVPYHVAFMADGGFVVVGQADGAIHLQRYQPNALPDTSFGVQGSIKIPDSGNANRAGLAIHKDVIVASVSVWPSITTSTHLHGYTVQGEPIAQFTREVRGDLEGGQVFDHLQFDTQGRLLLAGTRTYRSGDDPEAQSSLHVARLNVDGTVDNDFGKNGFSELNVYHAAANGIHVDESGVRILTLMPITIGAFYEKVAKFQV
>CP026674.1|AVD90500.1|5654289_5655180_+|universal-stress-protein
MSQFKRLFVMLGPQMRHTPALQRAAALAESSGALLDINVFVDDVDTFGLMSDGRERERLLSDNRQWLADEAEQLTNSGLDVSTELLLTRDPLASALEQVERLGCDLLIKDVQHEPVLKRLLVTPLDWQLLKDSPVAVHLVSDIRLPLPRQVAAAVDLNSHGAGEHLDEQVIRSAHALALQCNAELHLLHVCDATKTHIADFGAGTVTMPGFDGSVRTAQRAAFNRLGDHHEIPLERRHFLEGPAIRAIAEFVNHSRADVIVMGSHRHDAMQTFLGGTTAHVLEHPLCNVLAIKATR
>CP026674.1|AVD90501.1|5655336_5657478_+|TonB-dependent-siderophore-receptor
MRRTFVSLCVLHAVSAQAWAEPDPQSEPVQIELQALSITSSADSERADGPVTGYKATRSASATRTDTALHETPQSVSVVPKDVLTDTGATRLQDGLDYAGGVGRANNFGGQGLTTFTVRGFTTGEFYRNGFPINRGYPNAPDANTVERLEVIRGPATSLYGRGDPGGTFNVVSKQPLPESHVTLGSQLDDQGMQRATLDATGPLTQDGNLAYRLNVLGEGGDSFRDNVESERYSVAPVLSWQVNDATKIVFEGDFMRNNHPLDRGLTRLPNQLGSASRDTNVWGKGSDNMLHNDNNMAQLRFEHALNEDWTLGGGTQWLDGSLKGNAIEANGLQADGRTLGRNFNYRHLEWRDRDYQLNLTGHFDTAGFSHTLLTGIEYEDYDYNSIILRSAGGKTDYPIDLFDPVYDQSRPALTRTTTHDKENLKTWAFFIQDQVALTERLKALAGVRFERFEHDYVNKLNKAGDFDKGENGVTPRFGLLYDLTDTVAVYANTARSFKPNSGAPAGGSGRGFDPEKGKSYELGVKWEALDRQLSVDAAIYHIVKENVLANDPNDPTGTYKIAAGEVRSRGLDINIAGNITPEWRVIGGYAYVDAEVTKDTSLPTGTRLANIPRNSFSLLNTYEFQDGLAKGLGLGVGVKYVDDRQGQTAATTYTMEQYTVVDLLSFYQVNEHVRLNLDLKNVFDKGYDEGAFNNYVYPGEPRTVQAGVSYTF
>CP026674.1|AVD90502.1|5657565_5658087_-|acyloxyacyl-hydrolase
MKTRLAASLAAAVLALAGANLAQAAQVSGAVGATGQGDMTYRIGLSFDWDKKWLESSTGYLSGYWDAAYTYWEGGEASGAHSLSFSPVFTYEFSGFTYTPYIEAGIGLAAFSKTDVGDQRLGSAVNFEDRIGFGLKLPGEQKVGIRAMHYSNAGLKQPNDGIESYSLFYSKGF
>CP026674.1|AVD90926.1|5658284_5659031_-|dioxygenase
MNLERQLKSLDEQGYVLIPNVLDPLRVALVRCAIDDLQPIHWDYQGLLEHYKCVFNRNPLWLPFLDLPPLISLAEAVLGHDCHVIGQTAWRSHPGYPGMALHLDHLPMALPAWLREHGDFTQPIQILTAQLYLTDVDQSLGPTWVVPGSHRAGRTPREGERQWQGREAEPVLCKAGDALVFRSDLWHSGGANLSESRDRDMLQVHYGRRMVAQKFSPYLAWRFNPEVLEHATPRQRRLLGEHDEAEYD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

361907 : 421722

Pseudomonas_phage(46.88%)

terminase,integrase,portal,holin,tail

attL 352697:352745|attR 424375:424423

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
352697:352745	attL	NA	NA	NA	NA
AVD85934.1\|361907_362330_+	hypothetical protein	A0A1B0VMH3	Pseudomonas_phage	2.0e-53	70.0
AVD85935.1\|362371_362971_+\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	3.9e-66	68.5
AVD85936.1\|363938_365237_-\|portal	phage portal protein	H2BDA8	Pseudomonas_virus	9.0e-185	71.2
AVD85937.1\|365387_367067_-\|terminase	terminase	S4TSQ6	Salmonella_phage	2.8e-194	61.0
AVD85938.1\|367220_367559_-	HNH endonuclease	A0A2H4PHY5	Pseudomonas_phage	2.8e-21	60.3
AVD85939.1\|367558_367882_-\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	3.8e-28	63.2
AVD85940.1\|367978_368236_-	hypothetical protein	NA	NA	NA	NA
AVD85941.1\|368278_369274_-	hypothetical protein	NA	NA	NA	NA
AVD85942.1\|369277_370000_-	hypothetical protein	A0A1B0VMF2	Pseudomonas_phage	2.2e-79	65.6
AVD85943.1\|370011_370329_-	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	1.1e-30	61.9
AVD90722.1\|371343_372279_+\|integrase	integrase	A0A2D1GN00	Marinobacter_phage	3.0e-49	37.0
AVD85944.1\|372585_372792_-	hypothetical protein	NA	NA	NA	NA
AVD85945.1\|372781_373090_-	hypothetical protein	A0A2H4JER5	uncultured_Caudovirales_phage	2.4e-35	72.2
AVD90723.1\|373169_373394_-	hypothetical protein	A0A2H4JG60	uncultured_Caudovirales_phage	8.0e-25	75.7
AVD85946.1\|375808_376333_-	DUF2514 domain-containing protein	A0A2H4J3Q6	uncultured_Caudovirales_phage	4.9e-41	77.4
AVD85947.1\|376329_376776_-	structural protein P5	A0A2R3UAM8	Myoviridae_environmental_samples	1.8e-36	57.5
AVD90724.1\|376834_377230_-	hypothetical protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	2.8e-36	64.1
AVD85948.1\|377427_378240_-\|tail	phage tail protein	A0A0S2SY45	Pseudomonas_phage	1.2e-46	45.2
AVD85949.1\|378255_379131_-	hypothetical protein	NA	NA	NA	NA
AVD85950.1\|379131_379446_-	hypothetical protein	NA	NA	NA	NA
AVD85951.1\|379442_382910_-	host specificity protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	55.4
AVD85952.1\|382965_383550_-\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	8.1e-77	76.8
AVD85953.1\|383592_384012_-	hypothetical protein	J9Q806	Salmonella_phage	2.3e-25	42.5
AVD85954.1\|384188_384452_+	hypothetical protein	NA	NA	NA	NA
AVD85955.1\|384674_385430_-	hydrolase Nlp/P60	A0A2H4J1J7	uncultured_Caudovirales_phage	9.7e-123	78.5
AVD85956.1\|385432_386182_-\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	1.1e-121	77.5
AVD85957.1\|386191_386530_-\|tail	phage tail protein	A0A2H4JI07	uncultured_Caudovirales_phage	4.0e-44	72.3
AVD85958.1\|386529_389931_-\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	4.1e-205	53.3
AVD90725.1\|389934_390186_-	hypothetical protein	A0A2H4JBP7	uncultured_Caudovirales_phage	2.3e-28	77.8
AVD85959.1\|390248_390632_-	hypothetical protein	A0A2H4IYQ5	uncultured_Caudovirales_phage	3.7e-38	58.3
AVD85960.1\|390641_391301_-\|tail	phage tail protein	A0A0S2SYG8	Pseudomonas_phage	4.1e-85	72.4
AVD85961.1\|391340_391769_-	hypothetical protein	A0A2H4J5P1	uncultured_Caudovirales_phage	2.3e-68	94.2
AVD85962.1\|391765_392437_-	hypothetical protein	A0A2H4J0Q3	uncultured_Caudovirales_phage	6.7e-59	53.6
AVD85963.1\|392439_392826_-	hypothetical protein	A0A2H4IZB5	uncultured_Caudovirales_phage	6.8e-40	63.8
AVD85964.1\|392827_393196_-	hypothetical protein	A0A0S2SYB7	Pseudomonas_phage	5.4e-26	53.5
AVD85965.1\|393195_393492_-	hypothetical protein	A0A0H5BBX8	Pseudomonas_phage	1.0e-06	53.3
AVD85966.1\|393533_394502_-	hypothetical protein	A0A0H5ARK0	Pseudomonas_phage	1.4e-142	79.8
AVD85967.1\|394511_395258_-	hypothetical protein	A0A0H5AWD1	Pseudomonas_phage	2.7e-93	77.2
AVD85968.1\|395409_396486_-	hypothetical protein	A0A0H5BBX3	Pseudomonas_phage	1.7e-96	51.5
AVD85969.1\|396485_397898_-	DNA-binding protein	A0A0H5AWC7	Pseudomonas_phage	3.0e-173	64.6
AVD85970.1\|397894_399214_-\|terminase	terminase	A0A0S2SYF1	Pseudomonas_phage	1.5e-248	93.4
AVD85971.1\|399188_399665_-	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	3.5e-70	82.9
AVD85972.1\|399695_400307_-	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	1.3e-85	71.4
AVD85973.1\|400327_400543_-	hypothetical protein	NA	NA	NA	NA
AVD85974.1\|400602_400839_+	hypothetical protein	NA	NA	NA	NA
AVD85975.1\|400876_401146_-	hypothetical protein	A0A1B0VME7	Pseudomonas_phage	1.1e-17	58.8
AVD85976.1\|401145_401457_-	peptidase M48, Ste24p	A0A1B0VME9	Pseudomonas_phage	2.2e-17	52.3
AVD85977.1\|401948_402245_+	hypothetical protein	NA	NA	NA	NA
AVD85978.1\|402271_402952_-	hypothetical protein	A0A2H4IZI6	uncultured_Caudovirales_phage	4.2e-109	98.7
AVD85979.1\|403067_403670_-	ninG protein	L7TH85	Pseudomonas_virus	2.1e-56	55.3
AVD85980.1\|403660_403984_-	hypothetical protein	A0A2H4J249	uncultured_Caudovirales_phage	5.0e-12	45.0
AVD85981.1\|403980_404451_-	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	6.1e-59	65.4
AVD85982.1\|405072_405333_-	hypothetical protein	A0A2H4J0W8	uncultured_Caudovirales_phage	1.9e-25	61.8
AVD85983.1\|405329_406136_-	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	3.3e-60	52.3
AVD85984.1\|406122_407049_-	helix-turn-helix domain-containing protein	A0A1B0VME0	Pseudomonas_phage	7.6e-53	69.6
AVD85985.1\|407045_407513_-	hypothetical protein	NA	NA	NA	NA
AVD85986.1\|407509_408373_-	transporter	Q8W644	Enterobacteria_phage	9.6e-50	41.6
AVD85987.1\|408460_408673_-	hypothetical protein	A0A2H4J8V2	uncultured_Caudovirales_phage	1.5e-17	66.2
AVD85988.1\|408692_408896_-	hypothetical protein	A0A2H4J528	uncultured_Caudovirales_phage	7.7e-27	92.5
AVD85989.1\|408928_409132_-	hypothetical protein	W6MWX8	Pseudomonas_phage	4.6e-11	58.2
AVD85990.1\|409254_409941_+	peptidase	W6MVG5	Pseudomonas_phage	1.7e-73	62.4
AVD85991.1\|410016_410517_+	hypothetical protein	NA	NA	NA	NA
AVD85992.1\|410935_411367_+	hypothetical protein	A0A2I6PHZ0	Pseudomonas_phage	4.2e-06	96.2
AVD85993.1\|411719_412118_+	hypothetical protein	W8VT00	Pseudomonas_phage	1.4e-16	58.8
AVD85994.1\|412145_412748_+	hypothetical protein	A0A2I7RAN1	Vibrio_phage	1.1e-28	39.2
AVD85995.1\|412879_413308_+	hypothetical protein	A0A1B0VMC3	Pseudomonas_phage	1.1e-17	42.0
AVD85996.1\|413304_413532_+	hypothetical protein	A0A2H4IZT6	uncultured_Caudovirales_phage	7.1e-05	36.0
AVD85997.1\|413982_415107_+	hypothetical protein	A0A1B0VN89	Pseudomonas_phage	1.1e-53	66.1
AVD85998.1\|415114_415873_+	single-stranded DNA-binding protein	A0A125RNR3	Pseudomonas_phage	9.6e-46	46.3
AVD85999.1\|415876_416494_+	exonuclease	A0A1B0VMB3	Pseudomonas_phage	1.1e-100	84.4
AVD86000.1\|416501_417014_+	hypothetical protein	A0A2H4J7C8	uncultured_Caudovirales_phage	1.8e-11	33.1
AVD86001.1\|417262_417625_+	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	2.8e-11	46.6
AVD86002.1\|417694_419533_+	DNA methyltransferase	Q5QF27	Pseudomonas_virus	1.5e-246	64.2
AVD86003.1\|419546_420272_+	hypothetical protein	NA	NA	NA	NA
AVD86004.1\|420363_420786_+	hypothetical protein	NA	NA	NA	NA
AVD86005.1\|420785_421055_+	hypothetical protein	A0A2H4J399	uncultured_Caudovirales_phage	6.9e-23	68.5
AVD86006.1\|421093_421306_+	hypothetical protein	NA	NA	NA	NA
AVD86007.1\|421302_421722_+	DUF2591 domain-containing protein	A0A125RNP6	Pseudomonas_phage	1.3e-15	36.8
424375:424423	attR	NA	NA	NA	NA

DBSCAN-SWA_2

628668 : 678011

Pseudomonas_phage(32.14%)

head,integrase,terminase,tRNA

attL 637081:637095|attR 677420:677434

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVD86176.1\|628668_629100_-	muraminidase	A0A0S2SYD0	Pseudomonas_phage	3.1e-57	77.3
AVD86177.1\|629098_630382_+	hypothetical protein	NA	NA	NA	NA
AVD86178.1\|630378_631203_+	hypothetical protein	NA	NA	NA	NA
AVD86179.1\|631218_632688_-	hypothetical protein	A0A2I7QLN8	Vibrio_phage	5.6e-26	37.2
AVD86180.1\|632838_633693_-	hypothetical protein	A0A2H4N7B0	Pectobacterium_phage	1.9e-21	58.2
AVD86181.1\|633694_634336_-	hypothetical protein	N0DSE2	Edwardsiella_phage	2.6e-68	61.0
AVD86182.1\|634332_635550_-	hypothetical protein	A0A291LBS4	Klebsiella_phage	2.1e-143	64.8
AVD86183.1\|635542_635890_-	hypothetical protein	N0DP77	Edwardsiella_phage	1.3e-37	71.9
AVD86184.1\|635886_636543_-	hypothetical protein	A0A2H4N7C1	Pectobacterium_phage	2.0e-63	58.0
AVD86185.1\|636553_637969_-	hypothetical protein	N0DQR5	Edwardsiella_phage	1.5e-108	44.2
637081:637095	attL	NA	NA	NA	NA
AVD86186.1\|637971_638274_-	hypothetical protein	L0MZ23	Edwardsiella_phage	2.6e-34	68.8
AVD86187.1\|638273_638933_-	hypothetical protein	L0MX82	Edwardsiella_phage	3.7e-62	57.3
AVD86188.1\|638935_640279_-	hypothetical protein	NA	NA	NA	NA
AVD86189.1\|640439_640841_-	hypothetical protein	N0DSC4	Edwardsiella_phage	2.7e-23	48.3
AVD86190.1\|640844_641252_-	hypothetical protein	B5AX66	Iodobacteriophage	1.6e-55	76.3
AVD86191.1\|641264_642407_-	hypothetical protein	L0MYG2	Edwardsiella_phage	1.4e-141	67.0
AVD86192.1\|642425_642971_-	hypothetical protein	B5AX63	Iodobacteriophage	1.6e-50	58.5
AVD86193.1\|642967_643336_-	hypothetical protein	A0A2H4N7F0	Pectobacterium_phage	2.2e-35	58.1
AVD86194.1\|643332_643932_-	hypothetical protein	L0MXE9	Edwardsiella_phage	3.9e-58	59.2
AVD86195.1\|643931_644351_-	DUF4054 domain-containing protein	L0MXZ2	Edwardsiella_phage	3.2e-43	61.4
AVD86196.1\|644396_644714_-	hypothetical protein	NA	NA	NA	NA
AVD86197.1\|644779_645811_-	hypothetical protein	H9C0E5	Vibrio_phage	1.5e-129	71.2
AVD86198.1\|645814_646309_-	hypothetical protein	H9C117	Vibrio_phage	2.1e-41	59.3
AVD86199.1\|646311_647475_-	hypothetical protein	L0MX79	Edwardsiella_phage	1.0e-94	56.7
AVD86200.1\|647499_648315_-\|head	phage head morphogenesis protein	B5AX44	Iodobacteriophage	1.0e-77	55.1
AVD86201.1\|648436_649825_-	hypothetical protein	A0A1I9SES0	Klebsiella_phage	2.2e-165	67.8
AVD86202.1\|649840_651391_-\|terminase	terminase	E5AGA3	Erwinia_phage	4.6e-135	47.2
AVD86203.1\|651390_651864_-	hypothetical protein	A0A125RNL6	Pseudomonas_phage	1.2e-46	68.5
AVD86204.1\|651895_652507_-	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	2.9e-85	71.4
AVD86205.1\|652527_652743_-	hypothetical protein	NA	NA	NA	NA
AVD86206.1\|652802_653039_+	hypothetical protein	NA	NA	NA	NA
AVD86207.1\|653076_653346_-	hypothetical protein	A0A1B0VME7	Pseudomonas_phage	1.1e-17	58.8
AVD86208.1\|653345_653657_-	peptidase M48, Ste24p	A0A1B0VME9	Pseudomonas_phage	6.5e-17	50.5
AVD86209.1\|653798_654389_-	hypothetical protein	A0A0S2SYA9	Pseudomonas_phage	6.5e-66	58.8
AVD86210.1\|654504_655107_-	ninG protein	A0A0U1VZM0	Pseudomonas_phage	2.4e-55	56.3
AVD86211.1\|655097_655397_-	LuxR family transcriptional regulator	A0A1W6JTA9	Pseudomonas_phage	1.8e-08	44.4
AVD86212.1\|655393_655864_-	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	1.2e-59	66.0
AVD86213.1\|656015_656777_-	Replication protein P	A0A2D1GNB3	Pseudomonas_phage	3.5e-72	60.8
AVD86214.1\|656773_657550_-	hypothetical protein	A0A2D1GNQ6	Pseudomonas_phage	1.9e-25	49.6
AVD86215.1\|657546_658284_-	phage antirepressor protein	A0A059VF66	Pseudomonas_phage	1.0e-100	74.7
AVD86216.1\|658428_658668_+	hypothetical protein	NA	NA	NA	NA
AVD86217.1\|658828_659023_-	hypothetical protein	NA	NA	NA	NA
AVD86218.1\|659054_659261_-	hypothetical protein	NA	NA	NA	NA
AVD86219.1\|659279_659480_-	hypothetical protein	A0A2H4J115	uncultured_Caudovirales_phage	6.3e-13	59.4
AVD86220.1\|659510_659726_-	XRE family transcriptional regulator	K7PMD5	Enterobacterial_phage	1.0e-13	53.5
AVD86221.1\|659829_660636_+	XRE family transcriptional regulator	A0A2D1GNH0	Pseudomonas_phage	6.8e-66	49.3
AVD86222.1\|660638_660869_+	hypothetical protein	NA	NA	NA	NA
AVD86223.1\|660923_661259_+	hypothetical protein	NA	NA	NA	NA
AVD86224.1\|661412_661796_+	hypothetical protein	NA	NA	NA	NA
AVD86225.1\|661859_662441_-	hypothetical protein	NA	NA	NA	NA
AVD86226.1\|662527_662854_-	hypothetical protein	A0A2D1GND3	Pseudomonas_phage	1.2e-29	66.7
AVD86227.1\|663309_663627_+	hypothetical protein	NA	NA	NA	NA
AVD86228.1\|663656_663869_+	hypothetical protein	A0A2H4JGV5	uncultured_Caudovirales_phage	1.7e-16	63.6
AVD86229.1\|663914_664133_+	hypothetical protein	NA	NA	NA	NA
AVD86230.1\|664601_664964_+	hypothetical protein	A0A2H4JGG9	uncultured_Caudovirales_phage	1.6e-19	73.4
AVD86231.1\|664960_665221_+	hypothetical protein	A0A0S2SY95	Pseudomonas_phage	3.5e-24	58.1
AVD86232.1\|665241_665655_+	hypothetical protein	NA	NA	NA	NA
AVD86233.1\|665651_665846_+	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	1.1e-14	59.7
AVD86234.1\|665842_666058_+	hypothetical protein	NA	NA	NA	NA
AVD86235.1\|666054_666258_+	hypothetical protein	NA	NA	NA	NA
AVD86236.1\|666542_667274_+	hypothetical protein	A0A2H4J2D5	uncultured_Caudovirales_phage	2.7e-114	85.6
AVD86237.1\|667270_667834_+	hypothetical protein	A0A2H4IZG3	uncultured_Caudovirales_phage	3.5e-93	95.2
AVD86238.1\|667841_668354_+	hypothetical protein	A0A2H4J7C8	uncultured_Caudovirales_phage	4.0e-11	33.7
AVD86239.1\|668357_668552_+	hypothetical protein	NA	NA	NA	NA
AVD86240.1\|668593_668941_+	hypothetical protein	A0A2H4J0L9	uncultured_Caudovirales_phage	2.4e-44	83.5
AVD86241.1\|668915_669278_+	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	1.1e-12	48.9
AVD86242.1\|669346_670057_+	HNH endonuclease	A0A1S5SDS7	Streptococcus_phage	3.6e-18	28.6
AVD86243.1\|670049_670271_+	hypothetical protein	NA	NA	NA	NA
AVD86244.1\|670283_671024_+	hypothetical protein	A0A2L0V0X4	Agrobacterium_phage	1.5e-06	42.6
AVD86245.1\|671114_671303_+	hypothetical protein	NA	NA	NA	NA
AVD86246.1\|671299_671521_+	hypothetical protein	A0A2H4J399	uncultured_Caudovirales_phage	1.0e-11	56.3
AVD86247.1\|671517_671730_+	hypothetical protein	NA	NA	NA	NA
AVD90735.1\|671735_672134_+	hypothetical protein	J7I4M3	Pseudomonas_phage	4.9e-09	34.7
AVD86248.1\|672130_672484_+	hypothetical protein	NA	NA	NA	NA
AVD86249.1\|672530_672842_+	hypothetical protein	NA	NA	NA	NA
AVD86250.1\|672893_673391_+	hypothetical protein	A0A1B0VM52	Pseudomonas_phage	2.0e-36	61.5
AVD86251.1\|673428_674163_+	serine/threonine protein phosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.5e-88	63.7
AVD86252.1\|674364_674646_+	Pyocin activator protein PrtN	A0A2K8HN48	Pseudomonas_phage	1.3e-32	78.7
AVD86253.1\|674614_675757_-\|integrase	integrase	L7TP61	Pseudomonas_virus	8.2e-166	75.5
AVD90736.1\|675890_676865_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
AVD86254.1\|677084_678011_+	transaldolase	A0A1D8KMI9	Synechococcus_phage	1.1e-11	35.4
677420:677434	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2726111 : 2823272

100

uncultured_Caudovirales_phage(27.27%)

capsid,terminase,integrase,transposase,portal,tail,holin,head,protease

attL 2785295:2785341|attR 2801232:2801278

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVD87983.1\|2726111_2728115_+\|holin	high-affinity choline transporter BetT	A0A2I7QNT1	Vibrio_phage	1.3e-20	27.0
AVD87984.1\|2728177_2729011_-	taurine dioxygenase	NA	NA	NA	NA
AVD87985.1\|2729058_2729889_-	taurine ABC transporter permease TauC	NA	NA	NA	NA
AVD87986.1\|2729885_2730680_-	taurine ABC transporter ATP-binding subunit	G3M9Y6	Bacillus_virus	1.8e-31	36.8
AVD87987.1\|2730704_2731676_-	taurine ABC transporter substrate-binding protein	NA	NA	NA	NA
AVD87988.1\|2732177_2733518_+	outer membrane porin, OprD family	NA	NA	NA	NA
AVD87989.1\|2733681_2734320_+	peroxiredoxin	NA	NA	NA	NA
AVD87990.1\|2734780_2735374_+	NADPH-dependent FMN reductase	NA	NA	NA	NA
AVD87991.1\|2735467_2736433_+	sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
AVD87992.1\|2736492_2737641_+	alkanesulfonate monooxygenase, FMNH(2)-dependent	NA	NA	NA	NA
AVD87993.1\|2737651_2738449_+	aliphatic sulfonate ABC transporter permease SsuC	NA	NA	NA	NA
AVD87994.1\|2738445_2739258_+	aliphatic sulfonates ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.7e-28	40.1
AVD87995.1\|2739289_2739505_+	transporter	NA	NA	NA	NA
AVD87996.1\|2739543_2740176_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AVD87997.1\|2740175_2741768_-	glutamate--cysteine ligase	NA	NA	NA	NA
AVD87998.1\|2741949_2742333_-	PaaI family thioesterase	NA	NA	NA	NA
AVD87999.1\|2742332_2744660_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
AVD88000.1\|2744889_2745630_+	two-component system response regulator OmpR	W8CYM9	Bacillus_phage	3.5e-32	36.7
AVD88001.1\|2745751_2747065_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	4.7e-08	24.2
AVD88002.1\|2747190_2748096_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	3.6e-39	34.0
AVD88003.1\|2748092_2748575_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
AVD88004.1\|2748684_2749086_+	RNA-binding protein	NA	NA	NA	NA
AVD88005.1\|2749185_2749980_-	phosphatase PAP2 family protein	NA	NA	NA	NA
AVD88006.1\|2750091_2750991_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
AVD88007.1\|2751170_2752718_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	1.0e-126	46.7
AVD88008.1\|2752944_2753385_+	acyl-CoA thioesterase	NA	NA	NA	NA
AVD88009.1\|2753441_2753921_-	hypothetical protein	NA	NA	NA	NA
AVD88010.1\|2754159_2756505_-	CbbBc protein	NA	NA	NA	NA
AVD88011.1\|2756510_2757341_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
AVD88012.1\|2757515_2757956_+	peptidoglycan-binding protein LysM	G3MBQ1	Bacillus_virus	2.8e-05	45.9
AVD88013.1\|2758019_2758682_-	GMP/IMP nucleotidase	NA	NA	NA	NA
AVD88014.1\|2758746_2759313_+	ADP compounds hydrolase NudE	NA	NA	NA	NA
AVD88015.1\|2759309_2760137_+	3'(2'),5'-bisphosphate nucleotidase	NA	NA	NA	NA
AVD88016.1\|2760179_2760635_-	thioesterase	NA	NA	NA	NA
AVD88017.1\|2760631_2762041_-	Fis family transcriptional regulator	W8CYM9	Bacillus_phage	4.6e-09	29.5
AVD88018.1\|2762037_2763852_-	sensor histidine kinase	NA	NA	NA	NA
AVD88019.1\|2763932_2764478_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.5e-51	57.5
AVD88020.1\|2764876_2765983_+	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	3.9e-104	50.0
AVD88021.1\|2766169_2766367_+	hypothetical protein	NA	NA	NA	NA
AVD88022.1\|2766809_2768132_+	outer membrane porin, OprD family	NA	NA	NA	NA
AVD88023.1\|2768160_2769831_-	FMN-binding glutamate synthase family protein	NA	NA	NA	NA
AVD88024.1\|2769978_2771355_-	HAMP domain-containing protein	NA	NA	NA	NA
AVD88025.1\|2771347_2772067_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.8e-30	33.8
AVD90804.1\|2772223_2774503_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
AVD88026.1\|2774842_2775082_+	type II toxin-antitoxin system antitoxin, RelB/DinJ family	A0A2H4JBG1	uncultured_Caudovirales_phage	1.2e-29	82.3
AVD88027.1\|2775071_2775371_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	6.1e-36	81.9
AVD88028.1\|2775492_2776348_+\|transposase	DDE transposase	A0A0N9SHJ4	Paenibacillus_phage	8.1e-17	38.8
AVD88029.1\|2776902_2777241_+	hypothetical protein	NA	NA	NA	NA
AVD88030.1\|2777230_2778319_+	hypothetical protein	A0A075BTZ7	Microcystis_phage	3.6e-09	38.6
AVD90805.1\|2778319_2779222_-	hypothetical protein	NA	NA	NA	NA
AVD90806.1\|2779241_2780030_-	hypothetical protein	NA	NA	NA	NA
AVD88031.1\|2780091_2781057_-	thymidylate synthase	A0A1G5SB41	Enterococcus_phage	4.8e-26	33.0
AVD88032.1\|2781070_2781373_-	DUF4031 domain-containing protein	A0A0M7QF68	Escherichia_phage	9.8e-10	38.6
AVD88033.1\|2781704_2781980_-	hypothetical protein	NA	NA	NA	NA
AVD90807.1\|2781976_2782957_-\|integrase	integrase	NA	NA	NA	NA
AVD88034.1\|2783887_2784229_-\|integrase	integrase	G8DCP8	Silicibacter_phage	3.2e-09	42.2
AVD88035.1\|2784360_2784711_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AVD88036.1\|2784707_2785031_-	transcriptional regulator	NA	NA	NA	NA
2785295:2785341	attL	NA	NA	NA	NA
AVD88037.1\|2785439_2786615_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	6.9e-75	40.5
AVD88038.1\|2786611_2786824_-	hypothetical protein	NA	NA	NA	NA
AVD88039.1\|2787030_2787585_-	hypothetical protein	W8VMA8	Pseudomonas_phage	1.3e-23	39.6
AVD88040.1\|2787581_2787833_-	hypothetical protein	NA	NA	NA	NA
AVD88041.1\|2787829_2788243_-	single-stranded DNA-binding protein	NA	NA	NA	NA
AVD88042.1\|2788239_2788524_-	hypothetical protein	NA	NA	NA	NA
AVD88043.1\|2788590_2788884_-	hypothetical protein	NA	NA	NA	NA
AVD88044.1\|2788897_2791633_-	bifunctional DNA primase/helicase	A0A2H4J936	uncultured_Caudovirales_phage	0.0e+00	63.4
AVD88045.1\|2791777_2792506_-	hypothetical protein	NA	NA	NA	NA
AVD88046.1\|2792502_2793336_-	peptidoglycan-binding protein	Q9ZXL6	Pseudomonas_virus	2.5e-87	61.6
AVD88047.1\|2793332_2793647_-\|holin	phage holin, lambda family	A0A2H4JFM8	uncultured_Caudovirales_phage	1.4e-22	53.0
AVD88048.1\|2793683_2793896_-\|tail	phage tail protein	A0A2H4J946	uncultured_Caudovirales_phage	9.3e-23	76.9
AVD88049.1\|2793895_2794372_-\|head	head completion/stabilization protein	Q9ZXM1	Pseudomonas_virus	2.1e-43	57.6
AVD88050.1\|2794469_2795171_-\|terminase	terminase	Q9ZXM2	Pseudomonas_virus	7.2e-64	60.6
AVD88051.1\|2795174_2796245_-\|capsid	phage major capsid protein, P2 family	A0A2H4JCR7	uncultured_Caudovirales_phage	3.6e-139	72.8
AVD88052.1\|2796278_2797127_-\|capsid	phage capsid protein	A0A2H4J928	uncultured_Caudovirales_phage	1.2e-84	59.9
AVD90808.1\|2797279_2799031_+\|terminase	terminase	A0A2H4JGK4	uncultured_Caudovirales_phage	2.7e-269	79.9
AVD88053.1\|2799030_2800074_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	2.0e-155	77.9
AVD88054.1\|2800107_2800509_-	hypothetical protein	NA	NA	NA	NA
AVD90809.1\|2801407_2801656_-	hypothetical protein	NA	NA	NA	NA
2801232:2801278	attR	NA	NA	NA	NA
AVD88055.1\|2802172_2802439_+	hypothetical protein	NA	NA	NA	NA
AVD88056.1\|2802444_2802717_+	DUF3077 domain-containing protein	NA	NA	NA	NA
AVD90810.1\|2803044_2804250_-	methyltransferase	NA	NA	NA	NA
AVD88057.1\|2804322_2805012_-	ABC transporter permease	NA	NA	NA	NA
AVD88058.1\|2805011_2805704_-	ABC transporter permease	NA	NA	NA	NA
AVD88059.1\|2805759_2806512_-	amino acid ABC transporter	NA	NA	NA	NA
AVD88060.1\|2806523_2807297_-	ATP-binding protein	G3M9Y6	Bacillus_virus	2.9e-21	32.4
AVD88061.1\|2807903_2809292_+	GABA permease	NA	NA	NA	NA
AVD88062.1\|2809434_2809878_-	hypothetical protein	NA	NA	NA	NA
AVD88063.1\|2809931_2810921_-	polyphosphate kinase 2	NA	NA	NA	NA
AVD88064.1\|2811317_2811590_-	oxidative damage protection protein	NA	NA	NA	NA
AVD88065.1\|2811586_2812654_-	adenine DNA glycosylase	NA	NA	NA	NA
AVD88066.1\|2812650_2814888_-	AsmA family protein	NA	NA	NA	NA
AVD88067.1\|2815209_2816868_+	MFS transporter	NA	NA	NA	NA
AVD90811.1\|2817082_2817676_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
AVD88068.1\|2817676_2818315_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
AVD88069.1\|2818315_2818576_+	DUF2164 domain-containing protein	NA	NA	NA	NA
AVD88070.1\|2818603_2819341_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
AVD88071.1\|2819351_2820122_+	imidazole glycerol phosphate synthase cyclase subunit	NA	NA	NA	NA
AVD88072.1\|2820218_2821397_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.2e-24	36.2
AVD88073.1\|2821393_2822239_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
AVD88074.1\|2822324_2823272_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

DBSCAN-SWA_4

4639247 : 4647731

uncultured_Caudovirales_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVD89606.1\|4639247_4640735_-	DNA cytosine methyltransferase	A0A2I7QRH3	Vibrio_phage	8.9e-104	48.4
AVD89607.1\|4640868_4641951_+	hypothetical protein	NA	NA	NA	NA
AVD89608.1\|4642344_4642524_+	hypothetical protein	NA	NA	NA	NA
AVD89609.1\|4642597_4642894_+	hypothetical protein	NA	NA	NA	NA
AVD89610.1\|4642971_4643220_+	hypothetical protein	NA	NA	NA	NA
AVD89611.1\|4643260_4643674_-	hypothetical protein	A0A0U4JNY7	Pseudomonas_phage	1.8e-38	59.5
AVD89612.1\|4643872_4644271_+	hypothetical protein	NA	NA	NA	NA
AVD89613.1\|4644286_4644598_-	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	5.7e-21	52.0
AVD89614.1\|4644572_4644920_-	hypothetical protein	A0A2H4J0L9	uncultured_Caudovirales_phage	6.3e-45	83.5
AVD89615.1\|4644961_4645156_-	hypothetical protein	NA	NA	NA	NA
AVD89616.1\|4645158_4645698_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	8.4e-44	52.0
AVD89617.1\|4645706_4646378_-	DNA polymerase III subunit epsilon	A0A059VJT9	Pseudomonas_phage	2.0e-95	71.3
AVD89618.1\|4646374_4647241_-	AAA family ATPase	A0A1B1P9H8	Acinetobacter_phage	6.2e-73	60.6
AVD89619.1\|4647515_4647731_-	hypothetical protein	A0A2H4J1S2	uncultured_Caudovirales_phage	6.7e-13	56.9

DBSCAN-SWA_5

4652056 : 4686106

Pseudomonas_phage(64.1%)

transposase,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVD90882.1\|4652056_4652722_-	phage repressor protein	A0A2H4J868	uncultured_Caudovirales_phage	8.2e-49	63.6
AVD89626.1\|4652810_4653020_+	Rha family transcriptional regulator	H2BD64	Pseudomonas_phage	5.5e-20	71.6
AVD89627.1\|4653052_4653253_+	hypothetical protein	A0A2H4J528	uncultured_Caudovirales_phage	3.7e-29	97.0
AVD89628.1\|4653272_4653485_+	hypothetical protein	A0A2H4J8V2	uncultured_Caudovirales_phage	1.1e-18	70.6
AVD89629.1\|4653543_4653750_+	hypothetical protein	NA	NA	NA	NA
AVD89630.1\|4653769_4653979_+	hypothetical protein	NA	NA	NA	NA
AVD89631.1\|4654052_4654304_+	hypothetical protein	H2BD65	Pseudomonas_phage	8.1e-18	63.3
AVD89632.1\|4654585_4655440_+	transporter	F1C5A3	Cronobacter_phage	7.8e-36	42.1
AVD89633.1\|4655436_4655688_+	hypothetical protein	F8TVH0	EBPR_siphovirus	1.4e-14	52.9
AVD89634.1\|4655684_4656161_+	hypothetical protein	A0A2H4J7V6	uncultured_Caudovirales_phage	5.9e-25	60.4
AVD89635.1\|4656157_4656937_+	helix-turn-helix domain-containing protein	A0A1W6JTD5	Pseudomonas_phage	1.1e-44	64.4
AVD89636.1\|4656933_4657695_+	Replication protein P	A0A2D1GNB3	Pseudomonas_phage	1.9e-73	64.1
AVD89637.1\|4657846_4658317_+	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	9.5e-60	66.0
AVD89638.1\|4658313_4658637_+	hypothetical protein	A0A2H4J249	uncultured_Caudovirales_phage	6.4e-15	45.9
AVD89639.1\|4658627_4659230_+	ninG protein	A0A0U1VZM0	Pseudomonas_phage	1.0e-53	55.8
AVD89640.1\|4659226_4659493_+	hypothetical protein	NA	NA	NA	NA
AVD89641.1\|4659608_4660289_+	hypothetical protein	A0A2H4IZI6	uncultured_Caudovirales_phage	2.5e-109	98.7
AVD89642.1\|4660827_4661139_+	peptidase M48, Ste24p	A0A1B0VME9	Pseudomonas_phage	2.2e-17	52.3
AVD89643.1\|4661138_4661408_+	hypothetical protein	A0A1B0VME7	Pseudomonas_phage	1.1e-17	58.8
AVD89644.1\|4661445_4661682_-	hypothetical protein	NA	NA	NA	NA
AVD89645.1\|4661741_4661957_+	hypothetical protein	NA	NA	NA	NA
AVD89646.1\|4661977_4662589_+	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	1.7e-85	71.4
AVD89647.1\|4662619_4663096_+	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	3.5e-70	82.9
AVD89648.1\|4663070_4664390_+\|terminase	terminase	A0A0S2SYF1	Pseudomonas_phage	5.3e-249	93.6
AVD89649.1\|4664386_4665799_+	DNA-binding protein	A0A0H5AWC7	Pseudomonas_phage	7.8e-174	64.6
AVD89650.1\|4665798_4666875_+	hypothetical protein	A0A0H5BBX3	Pseudomonas_phage	1.2e-97	52.4
AVD89651.1\|4667026_4667773_+	hypothetical protein	A0A0H5AWD1	Pseudomonas_phage	3.5e-93	77.2
AVD89652.1\|4667782_4668751_+	hypothetical protein	A0A0H5ARK0	Pseudomonas_phage	1.1e-142	79.8
AVD89653.1\|4668792_4669089_+	hypothetical protein	A0A0H5BBX8	Pseudomonas_phage	1.0e-06	53.3
AVD89654.1\|4669088_4669460_+	hypothetical protein	A0A0S2SYB7	Pseudomonas_phage	6.8e-29	56.7
AVD89655.1\|4669461_4669845_+	glutamate 5-kinase	A0A059VA70	Pseudomonas_phage	2.1e-25	47.6
AVD89656.1\|4669847_4670237_+	hypothetical protein	A0A059VF88	Pseudomonas_phage	3.8e-30	52.4
AVD89657.1\|4670233_4670641_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
AVD89658.1\|4670640_4670832_+	hypothetical protein	NA	NA	NA	NA
AVD89659.1\|4670897_4672067_+	Ig domain-containing protein	A0A059VG08	Pseudomonas_phage	5.4e-56	40.1
AVD89660.1\|4672124_4672568_+	hypothetical protein	NA	NA	NA	NA
AVD90883.1\|4672735_4672930_+	hypothetical protein	NA	NA	NA	NA
AVD89661.1\|4672944_4675809_+\|tail	tail length tape measure protein	A0A2H4J107	uncultured_Caudovirales_phage	2.9e-95	32.8
AVD89662.1\|4675805_4676261_+\|transposase	transposase	B5WZT5	Pseudomonas_phage	5.1e-34	45.5
AVD89663.1\|4676257_4676764_+	hypothetical protein	B5WZT6	Pseudomonas_phage	4.5e-39	47.5
AVD89664.1\|4676773_4677169_+	hypothetical protein	A0A2H4PI57	Pseudomonas_phage	2.3e-38	58.0
AVD89665.1\|4677165_4679877_+	hypothetical protein	A0A0H5ART3	Pseudomonas_phage	2.0e-287	55.7
AVD89666.1\|4679935_4681726_+	hypothetical protein	A0A0U4B0B2	Pseudomonas_phage	2.2e-40	45.7
AVD89667.1\|4681792_4683736_-	hypothetical protein	B5WZU0	Pseudomonas_phage	5.9e-55	36.3
AVD89668.1\|4684022_4684208_+	hypothetical protein	NA	NA	NA	NA
AVD89669.1\|4684265_4684709_+	structural protein P5	A0A2H4J6R1	uncultured_Caudovirales_phage	3.8e-34	52.3
AVD89670.1\|4684705_4685239_+	DUF2514 domain-containing protein	NA	NA	NA	NA
AVD89671.1\|4685281_4685506_+	hypothetical protein	A0A2H4JG60	uncultured_Caudovirales_phage	1.3e-27	82.4
AVD89672.1\|4685586_4685895_+	hypothetical protein	A0A2H4JER5	uncultured_Caudovirales_phage	2.4e-35	72.2
AVD89673.1\|4685884_4686106_+	hypothetical protein	A0A2H4J7A7	uncultured_Caudovirales_phage	3.0e-08	49.3

DBSCAN-SWA_6

4757372 : 4766859

uncultured_Caudovirales_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVD89740.1\|4757372_4758653_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.2e-94	45.3
AVD89741.1\|4758653_4760045_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
AVD89742.1\|4760077_4761037_-	glutathione-dependent reductase	NA	NA	NA	NA
AVD89743.1\|4761131_4762148_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.4e-153	78.5
AVD89744.1\|4762144_4762480_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	4.4e-43	75.7
AVD89745.1\|4762476_4762773_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.0e-27	64.6
AVD89746.1\|4762772_4763132_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.5e-36	65.0
AVD89747.1\|4763133_4763526_-	sulfurtransferase TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.9e-53	79.1
AVD89748.1\|4763609_4763858_-	hypothetical protein	NA	NA	NA	NA
AVD89749.1\|4763850_4764633_-	ABC transporter	NA	NA	NA	NA
AVD89750.1\|4764799_4765507_+	DNA-binding response regulator	NA	NA	NA	NA
AVD89751.1\|4765572_4766859_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	2.5e-09	22.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026674

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection