CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP026697	Citrobacter koseri strain AR_0025 chromosome, complete genome	0 crisprs	DEDDh,cas3,PD-DExK,DinG,cas6f	5
CP026699	Citrobacter koseri strain AR_0025 plasmid unitig_3_pilon, complete sequence	0 crisprs	NA	0
CP026698	Citrobacter koseri strain AR_0025 plasmid unitig_2_pilon, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

200084 : 212163

Liberibacter_phage(50.0%)

integrase

attL 206235:206250|attR 219733:219748

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVE57057.1\|200084_203147_-	DEAD/DEAH box helicase	A0A220A398	Liberibacter_phage	0.0e+00	70.4
AVE57058.1\|203146_204292_-	restriction endonuclease subunit S	A0A240FAT6	Liberibacter_phage	7.7e-63	71.1
AVE57059.1\|204292_205792_-	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	7.9e-209	79.3
AVE57060.1\|205788_207288_-	DNA methylase	A0A220A2U4	Liberibacter_phage	1.2e-225	76.6
206235:206250	attL	NA	NA	NA	NA
AVE57061.1\|207287_207515_-	XRE family transcriptional regulator	A0A0E3U244	Fusobacterium_phage	5.1e-11	42.5
AVE57062.1\|207755_209021_-\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	1.6e-82	42.7
AVE57063.1\|209505_210525_+	NAD(P)-dependent alcohol dehydrogenase	A0A2K9L7I1	Tupanvirus	6.4e-45	31.1
AVE57064.1\|210660_212163_+	ATP-binding protein	A0A248XCZ8	Klebsiella_phage	1.0e-83	44.6
219733:219748	attR	NA	NA	NA	NA

DBSCAN-SWA_2

3459639 : 3505481

Salmonella_phage(24.44%)

holin,terminase,integrase,tail,coat

attL 3455113:3455128|attR 3510896:3510911

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3455113:3455128	attL	NA	NA	NA	NA
AVE59922.1\|3459639_3461658_-	hypothetical protein	B1GS50	Salmonella_phage	4.9e-36	51.5
AVE59923.1\|3461707_3464425_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	58.9
AVE59924.1\|3464421_3464802_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.0e-56	77.0
AVE59925.1\|3464871_3465384_-	DUF4823 domain-containing protein	NA	NA	NA	NA
AVE59926.1\|3465442_3465931_-	ArsR family transcriptional regulator	A0A286S2B1	Klebsiella_phage	2.2e-59	70.7
AVE59927.1\|3465927_3466392_-	hypothetical protein	A0A286S298	Klebsiella_phage	2.2e-48	55.7
AVE59928.1\|3466449_3466674_+	hypothetical protein	NA	NA	NA	NA
AVE59929.1\|3466698_3469578_-\|tail	phage tail protein	A0A2H4J107	uncultured_Caudovirales_phage	1.2e-104	39.0
AVE59930.1\|3469672_3470227_+	hypothetical protein	NA	NA	NA	NA
AVE61269.1\|3470247_3470415_-	hypothetical protein	NA	NA	NA	NA
AVE59931.1\|3470564_3471032_-	hypothetical protein	NA	NA	NA	NA
AVE59932.1\|3471093_3472257_-	Ig domain-containing protein	A0A059VG08	Pseudomonas_phage	7.3e-61	42.1
AVE59933.1\|3472281_3472674_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
AVE59934.1\|3472670_3473303_-	hypothetical protein	A0A2H4J0Q3	uncultured_Caudovirales_phage	1.7e-11	31.9
AVE59935.1\|3473304_3473688_-	glutamate 5-kinase	A0A059VA70	Pseudomonas_phage	7.5e-23	48.0
AVE59936.1\|3473689_3474100_-	protein singed	A0A0H5AUF0	Pseudomonas_phage	4.6e-10	38.2
AVE59937.1\|3474553_3475696_-\|coat	P22 coat - protein 5 family protein	G8C7P7	Escherichia_phage	9.6e-90	48.2
AVE59938.1\|3475786_3476551_-	hypothetical protein	G8C7P6	Escherichia_phage	5.4e-89	68.5
AVE59939.1\|3476654_3477767_-	hypothetical protein	I6PD76	Cronobacter_phage	1.2e-116	56.3
AVE59940.1\|3477753_3479157_-	DNA-binding protein	G8C7P4	Escherichia_phage	1.1e-188	70.4
AVE59941.1\|3479161_3480463_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.5e-150	61.0
AVE59942.1\|3480443_3481430_-\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	1.5e-30	36.1
AVE59943.1\|3481540_3481978_+	hypothetical protein	NA	NA	NA	NA
AVE59944.1\|3482092_3482299_+	HEAT repeat domain-containing protein	NA	NA	NA	NA
AVE59945.1\|3482394_3482754_-	hypothetical protein	NA	NA	NA	NA
AVE59946.1\|3482818_3483013_-	hypothetical protein	K7PM01	Enterobacterial_phage	1.9e-14	79.5
AVE59947.1\|3482969_3483239_-	hypothetical protein	G8C7W1	Escherichia_phage	1.6e-16	59.8
AVE59948.1\|3483246_3483876_-	endolysin	G8C7W0	Escherichia_phage	2.2e-96	82.3
AVE59949.1\|3484032_3484314_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	5.1e-37	80.4
AVE59950.1\|3484300_3484696_-	hypothetical protein	K7PHB9	Enterobacterial_phage	3.5e-55	87.0
AVE59951.1\|3485014_3485482_-	heat-shock protein	NA	NA	NA	NA
AVE59952.1\|3485979_3486777_-	antitermination protein	A0A0M4S661	Salmonella_phage	9.2e-132	85.7
AVE59953.1\|3486766_3486913_-	hypothetical protein	H6WRZ0	Salmonella_phage	4.0e-17	87.5
AVE59954.1\|3486909_3487266_-	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	1.4e-58	87.3
AVE59955.1\|3487262_3487553_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	4.3e-47	92.7
AVE59956.1\|3487555_3487762_-	hypothetical protein	S4TNP0	Salmonella_phage	1.7e-21	69.1
AVE59957.1\|3487761_3488358_-	DUF1367 domain-containing protein	A0A0U2RT94	Escherichia_phage	2.3e-55	51.3
AVE59958.1\|3488395_3488644_-	hypothetical protein	K7PHG9	Enterobacteria_phage	8.0e-42	98.8
AVE59959.1\|3488760_3488994_-	DNA damage-inducible protein I	K7PM44	Enterobacteria_phage	9.2e-32	85.7
AVE59960.1\|3489219_3489615_-	hypothetical protein	NA	NA	NA	NA
AVE61270.1\|3489720_3490125_+	tolA family protein	NA	NA	NA	NA
AVE59961.1\|3491234_3492008_-	hypothetical protein	K7PHA5	Enterobacterial_phage	3.1e-39	74.0
AVE59962.1\|3492004_3492592_-	hypothetical protein	Q858D1	Salmonella_phage	6.0e-11	37.8
AVE59963.1\|3492588_3492900_-	hypothetical protein	NA	NA	NA	NA
AVE59964.1\|3492916_3493612_-	phage replication protein	G8C7U6	Escherichia_phage	1.4e-59	48.7
AVE59965.1\|3493608_3494607_-	replication protein	A5VW95	Enterobacteria_phage	2.8e-53	72.9
AVE61272.1\|3494721_3495216_-	regulator	K7PJT7	Enterobacteria_phage	1.6e-41	60.1
AVE59966.1\|3495266_3495500_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	6.0e-31	83.1
AVE61271.1\|3495603_3495990_+	transcriptional regulator	A0A0M4R5D1	Salmonella_phage	1.5e-55	88.1
AVE59967.1\|3496343_3497240_+	hypothetical protein	A0A0R6PIN1	Moraxella_phage	1.8e-30	32.5
AVE61273.1\|3497274_3497484_-	fumarate hydratase FumD	I6R0R9	Salmonella_phage	3.6e-27	91.3
AVE59968.1\|3497866_3498178_-	hypothetical protein	NA	NA	NA	NA
AVE61274.1\|3498270_3498543_+	hypothetical protein	NA	NA	NA	NA
AVE59969.1\|3498663_3498849_+	DUF1482 domain-containing protein	NA	NA	NA	NA
AVE59970.1\|3498858_3499017_+	hypothetical protein	K7P7H7	Enterobacteria_phage	1.8e-18	82.7
AVE59971.1\|3499038_3499392_+	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	2.0e-46	76.9
AVE59972.1\|3499519_3502513_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	0.0e+00	77.8
AVE59973.1\|3502525_3503635_+	enterohemolysin	H6WRX0	Salmonella_phage	5.5e-183	87.5
AVE59974.1\|3503675_3503915_+	DUF4060 domain-containing protein	M9P0E0	Enterobacteria_phage	1.2e-26	75.6
AVE59975.1\|3503979_3504195_+	hypothetical protein	A0A0U2RY08	Escherichia_phage	1.3e-19	59.2
AVE59976.1\|3504194_3505481_+\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	2.1e-109	50.1
3510896:3510911	attR	NA	NA	NA	NA

DBSCAN-SWA_3

4094507 : 4195946

Escherichia_phage(37.93%)

integrase,holin,transposase

attL 4127325:4127340|attR 4196237:4196252

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVE60488.1\|4094507_4096541_-\|holin	high-affinity choline transporter BetT	A0A2I7QNT1	Vibrio_phage	6.4e-20	26.3
AVE61305.1\|4096715_4096907_-	hypothetical protein	NA	NA	NA	NA
AVE60489.1\|4096823_4097417_+	transcriptional regulator BetI	NA	NA	NA	NA
AVE60490.1\|4097430_4098903_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
AVE60491.1\|4098916_4100593_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	6.8e-60	30.8
AVE60492.1\|4100698_4101817_+	glutamate--cysteine ligase	NA	NA	NA	NA
AVE60493.1\|4101882_4102131_+	DUF1158 domain-containing protein	NA	NA	NA	NA
AVE60494.1\|4102059_4103685_-	enterochelin esterase	NA	NA	NA	NA
AVE61306.1\|4103842_4105987_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
AVE60495.1\|4106023_4106365_-	RamA family antibiotic efflux transcriptional regulator	NA	NA	NA	NA
AVE60496.1\|4106394_4107495_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
AVE60497.1\|4107717_4108422_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVE60498.1\|4111318_4111675_-	cupin domain-containing protein	NA	NA	NA	NA
AVE60499.1\|4112077_4112782_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AVE60500.1\|4112867_4113890_+	DNA helicase UvrD	NA	NA	NA	NA
AVE60501.1\|4113902_4114118_-	hypothetical protein	NA	NA	NA	NA
AVE60502.1\|4114142_4114373_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AVE60503.1\|4114369_4114786_+	PIN domain-containing protein	NA	NA	NA	NA
AVE60504.1\|4115331_4116252_-	carbohydrate kinase	NA	NA	NA	NA
AVE60505.1\|4116248_4117619_-	hypothetical protein	NA	NA	NA	NA
AVE60506.1\|4117696_4118716_-	ribose ABC transporter permease	NA	NA	NA	NA
AVE60507.1\|4118702_4120235_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.9e-16	29.5
AVE60508.1\|4120299_4121253_-	LacI family transcriptional regulator	NA	NA	NA	NA
AVE60509.1\|4121539_4122571_-	LacI family transcriptional regulator	NA	NA	NA	NA
AVE60510.1\|4122759_4122990_+	hypothetical protein	NA	NA	NA	NA
AVE60511.1\|4123076_4123274_+	hypothetical protein	NA	NA	NA	NA
AVE60512.1\|4123278_4123809_+	chromosome partitioning protein ParB	E3SJD0	Synechococcus_phage	6.8e-06	36.8
AVE60513.1\|4124084_4125116_+\|transposase	IS630 family transposase ISEc33	NA	NA	NA	NA
AVE60514.1\|4125937_4126861_-\|transposase	IS5/IS1182 family transposase	Q9MCT5	Escherichia_phage	4.9e-177	99.7
4127325:4127340	attL	NA	NA	NA	NA
AVE60515.1\|4129602_4130586_+\|integrase	integrase	A0A1P8DJ76	Virus_Rctr85	1.3e-47	39.4
AVE60516.1\|4130679_4131135_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
AVE60517.1\|4131206_4131602_+	mercuric ion transporter MerT	NA	NA	NA	NA
AVE60518.1\|4131617_4131893_+	mercuric transporter periplasmic component	NA	NA	NA	NA
AVE60519.1\|4131920_4132346_+	mercury transport protein MerC	NA	NA	NA	NA
AVE60520.1\|4132384_4134070_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
AVE60521.1\|4134087_4134453_+	transcriptional regulator	NA	NA	NA	NA
AVE60522.1\|4134449_4134686_+	mercury resistance protein	NA	NA	NA	NA
AVE61307.1\|4134669_4134807_-	mercury resistance protein	NA	NA	NA	NA
AVE60523.1\|4134751_4134964_+	DUF3330 domain-containing protein	NA	NA	NA	NA
AVE60524.1\|4135093_4135651_+	resolvase	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
AVE60525.1\|4136192_4136897_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVE60526.1\|4136984_4137989_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AVE60527.1\|4140624_4141329_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVE60528.1\|4141655_4142156_+	ferritin	NA	NA	NA	NA
AVE60529.1\|4142308_4142434_+	ABC transporter	NA	NA	NA	NA
AVE60530.1\|4142814_4143183_+	hypothetical protein	NA	NA	NA	NA
AVE60531.1\|4145255_4145960_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVE60532.1\|4149158_4149863_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	5.8e-138	99.1
AVE60533.1\|4150619_4151591_-	chromosome partitioning protein ParB	Q1MVJ4	Enterobacteria_phage	1.4e-113	68.9
AVE60534.1\|4151587_4152793_-	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.1e-205	89.2
AVE60535.1\|4153155_4153788_+	serine recombinase	NA	NA	NA	NA
AVE60536.1\|4153841_4154042_+	hypothetical protein	NA	NA	NA	NA
AVE60537.1\|4154188_4155139_+\|transposase	ISNCY family transposase	Q2A0A7	Sodalis_phage	5.0e-76	55.6
AVE60538.1\|4155135_4155747_-	DUF2913 domain-containing protein	NA	NA	NA	NA
AVE61309.1\|4155743_4156139_-	hypothetical protein	NA	NA	NA	NA
AVE61308.1\|4156191_4156953_-	DNA polymerase III subunit epsilon	K7RFY5	Vibrio_phage	3.8e-26	36.7
AVE60539.1\|4157681_4157984_+	cytoplasmic protein	NA	NA	NA	NA
AVE61310.1\|4158057_4158342_-	hypothetical protein	NA	NA	NA	NA
AVE60540.1\|4158810_4159701_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AVE60541.1\|4160093_4161683_+	PTS glucose transporter subunit IIB	NA	NA	NA	NA
AVE60542.1\|4161760_4162204_+	ribose 5-phosphate isomerase B	NA	NA	NA	NA
AVE60543.1\|4162200_4162872_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
AVE60544.1\|4163313_4164294_+\|transposase	IS5/IS1182 family transposase	A0A077SK28	Escherichia_phage	3.4e-184	98.5
AVE60545.1\|4164332_4164485_-	ABC transporter	NA	NA	NA	NA
AVE60546.1\|4164739_4164937_-	hypothetical protein	NA	NA	NA	NA
AVE61311.1\|4165921_4166572_-	type 1 fimbrial protein	NA	NA	NA	NA
AVE60547.1\|4166586_4167561_-	fimbrial protein	NA	NA	NA	NA
AVE60548.1\|4167551_4170038_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
AVE60549.1\|4170049_4170751_-	molecular chaperone	NA	NA	NA	NA
AVE60550.1\|4170846_4171446_-	ferrous iron transporter B	NA	NA	NA	NA
AVE60551.1\|4173186_4173783_-	resolvase	A0A0A7NPV4	Enterobacteria_phage	1.7e-21	36.6
AVE60552.1\|4173946_4174315_-	hypothetical protein	NA	NA	NA	NA
AVE60553.1\|4175015_4177019_+\|holin	high-affinity choline transporter BetT	A0A2I7QNT1	Vibrio_phage	2.0e-21	26.2
AVE60554.1\|4177082_4178360_+	DUF2254 domain-containing protein	NA	NA	NA	NA
AVE60555.1\|4178567_4179548_+\|transposase	IS5/IS1182 family transposase	A0A077SK28	Escherichia_phage	1.8e-185	99.1
AVE61312.1\|4179586_4179706_-	ABC transporter	NA	NA	NA	NA
AVE60556.1\|4180481_4181477_+	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	1.1e-28	28.4
AVE60557.1\|4181492_4182416_+	ribokinase	NA	NA	NA	NA
AVE60558.1\|4182479_4183901_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA
AVE60559.1\|4183897_4184575_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
AVE60560.1\|4185602_4185986_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	3.0e-11	50.0
AVE60561.1\|4185982_4186330_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.7e-59	95.7
AVE60562.1\|4186379_4187915_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	2.0e-260	87.7
AVE60563.1\|4189150_4190833_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	8.5e-10	37.0
AVE60564.1\|4191194_4191899_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVE60565.1\|4195241_4195946_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
4196237:4196252	attR	NA	NA	NA	NA

DBSCAN-SWA_4

4200127 : 4257255

Escherichia_phage(29.17%)

integrase,transposase

attL 4202849:4202908|attR 4254542:4255901

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVE60568.1\|4200127_4201108_-\|transposase	IS5/IS1182 family transposase	A0A077SK28	Escherichia_phage	1.8e-185	99.1
AVE61314.1\|4201109_4201289_+	hypothetical protein	NA	NA	NA	NA
AVE60569.1\|4201327_4202308_-\|transposase	IS5/IS1182 family transposase	A0A077SK28	Escherichia_phage	1.2e-184	98.5
4202849:4202908	attL	NA	NA	NA	NA
AVE60570.1\|4202934_4203939_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AVE61315.1\|4204193_4204379_+	hypothetical protein	NA	NA	NA	NA
AVE61316.1\|4204529_4205039_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA
AVE60571.1\|4206210_4206441_+	thioredoxin family protein	NA	NA	NA	NA
AVE60572.1\|4206718_4206922_-	hypothetical protein	NA	NA	NA	NA
AVE60573.1\|4207003_4207831_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.9e-51	40.3
AVE60574.1\|4207848_4209327_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.9e-194	73.2
AVE60575.1\|4209833_4210856_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AVE60576.1\|4212189_4214154_+	GGDEF domain-containing protein	G3MA91	Bacillus_virus	1.6e-20	35.6
AVE60577.1\|4214245_4214455_-	hypothetical protein	NA	NA	NA	NA
AVE60578.1\|4215320_4216007_+	hypothetical protein	NA	NA	NA	NA
AVE60579.1\|4216003_4216465_+	hypothetical protein	NA	NA	NA	NA
AVE60580.1\|4216477_4217644_+	beta-aspartyl-peptidase	NA	NA	NA	NA
AVE60581.1\|4218798_4219107_-	hypothetical protein	Q716C1	Shigella_phage	6.7e-14	48.8
AVE60582.1\|4219475_4219952_+	hypothetical protein	NA	NA	NA	NA
AVE60583.1\|4219962_4221501_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.0e-299	99.8
AVE60584.1\|4221550_4221898_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
AVE60585.1\|4221894_4222275_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
AVE60586.1\|4222402_4223608_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.0e-09	36.2
AVE60587.1\|4223707_4224025_+	hypothetical protein	NA	NA	NA	NA
AVE60588.1\|4224045_4224348_+	hypothetical protein	NA	NA	NA	NA
AVE60589.1\|4224712_4225117_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.6e-68	97.8
AVE60590.1\|4225113_4225347_+	hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	8.3e-33	100.0
AVE60591.1\|4225494_4227885_-	hypothetical protein	NA	NA	NA	NA
AVE60592.1\|4227862_4229806_-	site-specific DNA-methyltransferase	Q1MVP0	Enterobacteria_phage	4.4e-26	25.3
AVE60593.1\|4229908_4230457_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	8.4e-76	85.5
AVE60594.1\|4230620_4233629_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	64.5
AVE60595.1\|4233734_4234013_-	hypothetical protein	NA	NA	NA	NA
AVE60596.1\|4234233_4234563_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2I6TCA4	Escherichia_phage	3.1e-17	43.1
AVE60597.1\|4234543_4234825_+	XRE family transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
AVE60598.1\|4235102_4236083_+\|transposase	IS5/IS1182 family transposase	A0A077SK28	Escherichia_phage	4.0e-185	98.8
AVE60599.1\|4236405_4237014_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AVE60600.1\|4237390_4239202_+	beta-glucuronidase	B9U1V4	Vaccinia_virus	1.1e-302	79.8
AVE60601.1\|4239198_4240572_+	MFS transporter	NA	NA	NA	NA
AVE60602.1\|4240620_4241886_+	glucuronide uptake porin UidC	NA	NA	NA	NA
AVE60603.1\|4242187_4243372_+	mannonate dehydratase	NA	NA	NA	NA
AVE60604.1\|4243478_4244948_+	fructuronate reductase	H8ZJP8	Ostreococcus_tauri_virus	6.9e-48	29.8
AVE60605.1\|4244967_4246398_+	glucuronate isomerase	NA	NA	NA	NA
AVE60606.1\|4246615_4247404_+	GntR family transcriptional regulator	NA	NA	NA	NA
AVE60607.1\|4247551_4248256_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVE60608.1\|4248477_4248792_-\|transposase	transposase	NA	NA	NA	NA
AVE60609.1\|4248730_4249744_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AVE60610.1\|4249888_4250386_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
AVE60611.1\|4250793_4251585_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
AVE60612.1\|4251748_4252096_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AVE60613.1\|4252089_4252929_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
AVE60614.1\|4252858_4253038_-	hypothetical protein	NA	NA	NA	NA
AVE60615.1\|4253056_4253329_+	hypothetical protein	NA	NA	NA	NA
AVE60616.1\|4253510_4254515_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AVE60617.1\|4254742_4255948_+	chromate transporter	NA	NA	NA	NA
4254542:4255901	attR	NA	NA	NA	NA
AVE60618.1\|4255958_4256264_+	PadR family transcriptional regulator	NA	NA	NA	NA
AVE60619.1\|4256279_4256462_-	resolvase	NA	NA	NA	NA
AVE61317.1\|4256490_4257255_+\|transposase	IS6 family transposase IS6100	A0A077SL39	Escherichia_phage	4.3e-86	65.7

DBSCAN-SWA_5

4260593 : 4292239

Salmonella_phage(36.36%)

integrase,transposase

attL 4268907:4268923|attR 4288210:4288226

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVE60624.1\|4260593_4261298_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVE60625.1\|4261530_4262391_+	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
AVE60626.1\|4262403_4262946_+	tunicamycin resistance protein	NA	NA	NA	NA
AVE60627.1\|4263427_4263619_-	hypothetical protein	NA	NA	NA	NA
AVE60628.1\|4263624_4263870_+	hypothetical protein	NA	NA	NA	NA
AVE60629.1\|4263920_4265057_+	DUF3883 domain-containing protein	NA	NA	NA	NA
AVE60630.1\|4265171_4266542_+\|transposase	IS1182 family transposase ISCfr1	NA	NA	NA	NA
AVE60631.1\|4267362_4268223_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AVE60632.1\|4268698_4271584_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.1e-190	39.9
4268907:4268923	attL	NA	NA	NA	NA
AVE60633.1\|4271709_4272324_+	recombinase family protein	E5FFF9	Burkholderia_phage	2.3e-37	48.6
AVE60634.1\|4272388_4273517_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.6e-52	41.1
AVE60635.1\|4273624_4274428_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	4.9e-24	34.3
AVE60636.1\|4274427_4275264_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
AVE61318.1\|4277222_4277615_+	cysteine hydrolase	NA	NA	NA	NA
AVE60637.1\|4277752_4278637_+	EamA family transporter	NA	NA	NA	NA
AVE60638.1\|4278668_4279868_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
AVE60639.1\|4279946_4280624_+	TetR family transcriptional regulator	NA	NA	NA	NA
AVE60640.1\|4280655_4280811_-	replication initiator protein	NA	NA	NA	NA
AVE60641.1\|4280801_4281506_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVE60642.1\|4281539_4282031_-	hypothetical protein	NA	NA	NA	NA
AVE60643.1\|4282137_4282875_+	resolvase	NA	NA	NA	NA
AVE60644.1\|4282871_4283096_+	hypothetical protein	NA	NA	NA	NA
AVE60645.1\|4283306_4284800_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AVE60646.1\|4284830_4285082_+	hypothetical protein	NA	NA	NA	NA
AVE60647.1\|4284975_4285278_-	phosphoglucosamine mutase	NA	NA	NA	NA
AVE60648.1\|4285364_4286180_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
AVE60649.1\|4286509_4286686_+\|integrase	integrase	T1S9J3	Salmonella_phage	1.0e-06	68.6
AVE60650.1\|4286867_4287872_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AVE60651.1\|4287950_4290917_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.9
4288210:4288226	attR	NA	NA	NA	NA
AVE60652.1\|4290919_4291480_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	2.1e-50	88.6
AVE60653.1\|4291534_4292239_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP026698

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

9338 : 74015

Stx2-converting_phage(33.33%)

integrase,transposase

attL 13451:13510|attR 69625:72061

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVE61348.1\|9338_11348_+	hypothetical protein	G8DH78	Emiliania_huxleyi_virus	1.6e-26	30.4
AVE61349.1\|11390_11822_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
AVE61350.1\|11818_12547_+	psiA family protein	NA	NA	NA	NA
AVE61351.1\|12543_12867_+	theronine dehydrogenase	I3UM57	Rhodobacter_phage	6.0e-13	38.1
13451:13510	attL	NA	NA	NA	NA
AVE61352.1\|13491_15027_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	2.0e-260	87.7
AVE61353.1\|15076_15424_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.7e-59	95.7
AVE61354.1\|15420_15804_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	4.1e-13	36.3
AVE61355.1\|16360_16735_+	hypothetical protein	A0A248SL90	Klebsiella_phage	2.2e-27	62.7
AVE61356.1\|16788_17076_+	hypothetical protein	NA	NA	NA	NA
AVE61357.1\|17122_17467_+	hypothetical protein	NA	NA	NA	NA
AVE61358.1\|17552_17816_+	hypothetical protein	NA	NA	NA	NA
AVE61359.1\|17858_18689_+	N-6 DNA methylase	H7BVT3	unidentified_phage	3.4e-12	37.9
AVE61360.1\|19315_19846_+	antirestriction protein	NA	NA	NA	NA
AVE61361.1\|19892_20369_-	lytic transglycosylase	NA	NA	NA	NA
AVE61362.1\|20800_21193_+	conjugal transfer protein TraM	NA	NA	NA	NA
AVE61363.1\|21381_22071_+	PAS fold family protein	NA	NA	NA	NA
AVE61364.1\|22157_22382_+	TraY domain-containing protein	NA	NA	NA	NA
AVE61365.1\|22439_22790_+	type IV conjugative transfer system pilin TraA	NA	NA	NA	NA
AVE61366.1\|22940_23246_+	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
AVE61367.1\|23260_23827_+	type IV conjugative transfer system protein TraE	NA	NA	NA	NA
AVE61368.1\|23813_24557_+	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA
AVE61369.1\|24543_25938_+	conjugal transfer protein TraB	NA	NA	NA	NA
AVE61370.1\|25959_26499_+	type IV conjugative transfer system protein TraV	NA	NA	NA	NA
AVE61371.1\|26618_26843_+	conjugal transfer protein TraR	NA	NA	NA	NA
AVE61372.1\|26846_27032_+	hypothetical protein	NA	NA	NA	NA
AVE61373.1\|27015_27417_+	hypothetical protein	NA	NA	NA	NA
AVE61374.1\|27406_27973_+	conjugal transfer protein TraP	NA	NA	NA	NA
AVE61375.1\|27965_30596_+	type IV secretion system protein TraC	NA	NA	NA	NA
AVE61376.1\|30592_30940_+	type-F conjugative transfer system protein TrbI	NA	NA	NA	NA
AVE61377.1\|30939_31587_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
AVE61417.1\|31589_32576_+	conjugal transfer protein TraU	NA	NA	NA	NA
AVE61378.1\|32592_33222_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
AVE61379.1\|33218_35072_+	type-F conjugative transfer system mating-pair stabilization protein TraN	NA	NA	NA	NA
AVE61380.1\|35103_35292_+	hypothetical protein	NA	NA	NA	NA
AVE61381.1\|35322_36072_+	type-F conjugative transfer system pilin assembly protein TraF	NA	NA	NA	NA
AVE61382.1\|36088_36337_+	type-F conjugative transfer system pilin chaperone TraQ	NA	NA	NA	NA
AVE61383.1\|36326_36881_+	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA
AVE61384.1\|36873_37302_+	conjugal transfer protein TrbF	NA	NA	NA	NA
AVE61385.1\|37288_38659_+	conjugal transfer protein TraH	NA	NA	NA	NA
AVE61386.1\|38658_41481_+	conjugal transfer protein TraG	NA	NA	NA	NA
AVE61387.1\|41502_41934_+	entry exclusion protein	NA	NA	NA	NA
AVE61388.1\|42008_42683_+	sel1 repeat family protein	NA	NA	NA	NA
AVE61389.1\|42833_43865_+\|transposase	IS630 family transposase ISEc33	NA	NA	NA	NA
AVE61390.1\|43971_46173_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
AVE61391.1\|46172_51413_+	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
AVE61392.1\|51414_52152_+	type-F conjugative transfer system pilin acetylase TraX	NA	NA	NA	NA
AVE61393.1\|52218_52938_+	conjugal transfer protein	NA	NA	NA	NA
AVE61394.1\|52930_53722_+	disulfide bond formation protein DsbA	NA	NA	NA	NA
AVE61395.1\|53869_54415_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.0e-20	33.1
AVE61396.1\|54566_54845_+	replication protein	NA	NA	NA	NA
AVE61397.1\|54774_54981_-	hypothetical protein	NA	NA	NA	NA
AVE61418.1\|55063_55141_+	RepA leader peptide Tap	NA	NA	NA	NA
AVE61398.1\|55121_55997_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
AVE61399.1\|58129_59152_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AVE61400.1\|59911_60055_+	serine/threonine protein kinase	NA	NA	NA	NA
AVE61401.1\|60229_60970_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
AVE61419.1\|61295_62273_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.2e-101	61.3
AVE61402.1\|63140_63410_+	DUF1778 domain-containing protein	NA	NA	NA	NA
AVE61403.1\|63413_63944_+	N-acetyltransferase	NA	NA	NA	NA
AVE61404.1\|64075_64969_+\|transposase	IS5/IS1182 family transposase	Q38213	Escherichia_phage	4.3e-154	86.8
AVE61405.1\|65907_66114_+\|transposase	transposase	NA	NA	NA	NA
AVE61406.1\|66070_67222_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	9.8e-42	35.3
AVE61407.1\|67330_67714_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	4.1e-13	36.3
AVE61408.1\|67710_68058_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.7e-59	95.7
AVE61409.1\|68107_69643_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	2.0e-260	87.7
AVE61410.1\|69699_71058_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	1.3e-117	47.5
AVE61411.1\|71883_73050_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	1.1e-218	94.3
69625:72061	attR	NA	NA	NA	NA
AVE61412.1\|73049_74015_+	plasmid-partitioning protein	I3WF22	Macacine_betaherpesvirus	8.8e-137	77.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026697

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP026698

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection