CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP014112	Escherichia coli strain FDAARGOS_144 plasmid unnamed2, complete sequence	0 crisprs	NA	0
CP014109	Escherichia coli strain FDAARGOS_144 plasmid unnamed3	0 crisprs	NA	0
CP014111	Escherichia coli strain FDAARGOS_144 chromosome, complete genome	0 crisprs	cas3,DEDDh,DinG,csa3	7
CP014110	Escherichia coli strain FDAARGOS_144 plasmid unnamed1, complete sequence	0 crisprs	RT	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

465913 : 513200

Enterobacteria_phage(60.0%)

lysis,head,terminase,portal,capsid,integrase,tRNA,tail

attL 458548:458563|attR 520706:520721

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
458548:458563	attL	NA	NA	NA	NA
AVF98703.1\|465913_467020_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AVF98704.1\|467073_467535_-	NUDIX hydrolase	NA	NA	NA	NA
AVF98705.1\|467544_468198_-	23S rRNA pseudouridine synthase E	NA	NA	NA	NA
AVF98706.1\|468369_469620_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
AVF98707.1\|469733_470876_-\|integrase	integrase	Q77Z02	Phage_21	3.6e-206	100.0
AVF98708.1\|470865_471102_-	excisionase	NA	NA	NA	NA
AVF98709.1\|471241_471481_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.7e-39	96.2
AVF98710.1\|471464_471791_-	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	9.8e-48	95.7
AVF98711.1\|471790_472012_-	conjugal transfer protein TraR	A0A1I9LJM6	Stx_converting_phage	2.3e-32	93.2
AVF98712.1\|472110_472392_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	3.0e-45	95.7
AVF98713.1\|472402_472594_-	hypothetical protein	A0A0P0ZC67	Stx2-converting_phage	1.8e-25	93.7
AVF98714.1\|472566_472749_-	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	1.8e-27	98.3
AVF98715.1\|472745_473426_-	exonuclease	A0A0P0ZCD4	Stx2-converting_phage	1.0e-131	99.6
AVF98716.1\|473422_474208_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
AVF98717.1\|474213_474510_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.1e-48	98.0
AVF98718.1\|474585_474792_-	cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.5e-27	85.1
AVF98719.1\|475267_476131_-	hypothetical protein	M9NYX6	Enterobacteria_phage	1.8e-93	62.1
AVF98720.1\|476197_476953_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.4e-92	75.0
AVF98721.1\|476991_477222_+	transcriptional regulator	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
AVF98722.1\|477291_477831_+	regulator	M9NZI6	Enterobacteria_phage	2.6e-61	66.1
AVF98723.1\|477827_478847_+	Replication protein O	A0A0K2FJ31	Enterobacteria_phage	1.3e-109	67.3
AVF98724.1\|478843_479545_+	Replication protein P	M1FJ72	Enterobacteria_phage	3.0e-126	97.4
AVF98725.1\|479794_484060_+	adhesin	NA	NA	NA	NA
AVF98726.1\|484096_485140_-	alpha/beta hydrolase	NA	NA	NA	NA
AVF98727.1\|485489_485591_+	hypothetical protein	NA	NA	NA	NA
AVF98728.1\|485587_486043_+	hypothetical protein	I6PD71	Cronobacter_phage	4.5e-59	66.2
AVF98729.1\|486042_486213_+	hypothetical protein	K7P7K0	Enterobacteria_phage	5.3e-13	67.9
AVF98730.1\|486205_486496_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	1.3e-46	93.8
AVF98731.1\|486492_486855_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	7.3e-60	95.7
AVF98732.1\|486851_486992_+	hypothetical protein	K7PHH3	Enterobacteria_phage	1.7e-09	72.1
AVF98733.1\|487077_487461_+	antitermination protein	A0A088CD47	Shigella_phage	2.0e-55	82.5
AVF98734.1\|487649_488732_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.6e-166	80.1
AVF98735.1\|489321_489537_+\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	1.5e-33	98.6
AVF98736.1\|489536_490034_+	lysozyme	A5LH83	Enterobacteria_phage	1.7e-91	99.4
AVF98737.1\|490030_490474_+\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	4.3e-70	92.5
AVF98738.1\|490512_490887_+	hypothetical protein	M1FPD9	Enterobacteria_phage	1.5e-47	80.6
AVF98739.1\|490985_491168_-	hypothetical protein	NA	NA	NA	NA
AVF98740.1\|491204_491396_+	hypothetical protein	NA	NA	NA	NA
AVF98741.1\|491477_492026_+\|terminase	phage terminase small subunit	A0A0U2S671	Escherichia_phage	1.0e-57	84.2
AVF98742.1\|491997_493926_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	9.7e-260	66.6
AVF98743.1\|493909_494116_+\|head	phage head-stabilizing protein	K7PM10	Enterobacteria_phage	3.0e-10	55.4
AVF98744.1\|494112_495705_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	4.2e-184	60.9
AVF98745.1\|495694_497200_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	7.9e-100	53.5
AVF98746.1\|497236_497584_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.6e-22	58.1
AVF98747.1\|497641_498670_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	2.7e-115	61.6
AVF98748.1\|498673_499096_+	hypothetical protein	NA	NA	NA	NA
AVF98749.1\|499088_499442_+\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	3.4e-38	65.0
AVF98750.1\|499453_500032_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.7e-79	92.2
AVF98751.1\|500028_500424_+\|tail	phage tail protein	A0A2R9YJI2	Escherichia_phage	5.0e-70	98.5
AVG02762.1\|500431_501172_+\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	4.3e-131	98.4
AVF98752.1\|501187_501610_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-70	95.7
AVF98753.1\|501591_502026_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
AVF98754.1\|502018_504580_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	90.4
AVF98755.1\|504576_504906_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	2.8e-58	97.2
AVF98756.1\|504905_505604_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.1e-132	98.7
AVF98757.1\|505608_506352_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.3e-147	96.8
AVF98758.1\|506249_506921_+\|tail	tail assembly protein	C6ZCZ4	Enterobacteria_phage	9.3e-101	96.4
AVF98759.1\|506981_510464_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
AVF98760.1\|510522_512922_+\|tail	phage tail protein	I1TE37	Escherichia_virus	1.0e-72	38.6
AVF98761.1\|512918_513200_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	2.9e-16	45.7
520706:520721	attR	NA	NA	NA	NA

DBSCAN-SWA_2

830559 : 873560

Enterobacteria_phage(58.54%)

lysis,portal,terminase,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVF99051.1\|830559_833031_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	56.7
AVF99052.1\|833124_833316_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AVF99053.1\|833312_833501_-	division inhibition protein DicB	NA	NA	NA	NA
AVF99054.1\|833756_834002_+	hypothetical protein	NA	NA	NA	NA
AVF99055.1\|833987_834605_-	hypothetical protein	NA	NA	NA	NA
AVF99056.1\|834564_834720_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	2.3e-07	53.2
AVF99057.1\|834912_835371_-	transcriptional regulator	I6PD69	Cronobacter_phage	2.8e-24	46.2
AVF99058.1\|835397_835625_+	transcriptional regulator	NA	NA	NA	NA
AVF99059.1\|835608_836130_+	hypothetical protein	NA	NA	NA	NA
AVF99060.1\|836056_837076_+	hypothetical protein	U5P0A0	Shigella_phage	5.2e-55	60.2
AVF99061.1\|837116_837539_+	DUF977 domain-containing protein	A0A0U2QQN3	Escherichia_phage	6.7e-65	92.1
AVF99062.1\|837535_837769_+	methyltransferase	I6S1S6	Salmonella_phage	2.9e-17	67.9
AVF99063.1\|837822_838488_+	hypothetical protein	NA	NA	NA	NA
AVF99064.1\|839043_839256_+	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	3.9e-29	95.7
AVF99065.1\|839472_839724_+	hypothetical protein	NA	NA	NA	NA
AVF99066.1\|839790_840069_+	hypothetical protein	NA	NA	NA	NA
AVF99067.1\|840070_841120_+	hypothetical protein	U5P0K4	Shigella_phage	4.8e-112	57.0
AVF99068.1\|841133_841886_+	antitermination protein	Q8SBE4	Shigella_phage	1.3e-130	94.8
AVF99069.1\|842561_842777_+	cold-shock protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
AVF99070.1\|843530_843746_+\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	1.1e-31	94.4
AVF99071.1\|843750_844062_+	hypothetical protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
AVF99072.1\|844058_844592_+	lysozyme from lambdoid prophage Qin	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
AVF99073.1\|844588_845086_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
AVF99074.1\|845449_845662_+	cold-shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
AVF99075.1\|845672_845861_+	cold-shock protein	NA	NA	NA	NA
AVF99076.1\|845891_846164_+	hypothetical protein	NA	NA	NA	NA
AVF99077.1\|846335_846509_+	protein GnsB	NA	NA	NA	NA
AVF99078.1\|846660_847071_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.2e-63	89.7
AVF99079.1\|847016_847217_-	hypothetical protein	C6ZCX4	Enterobacteria_phage	4.5e-11	70.0
AVF99080.1\|847371_847578_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	6.7e-26	91.2
AVF99081.1\|848122_849496_+\|transposase	IS4 family transposase ISEc13	NA	NA	NA	NA
AVF99082.1\|849697_850237_+	DUF1441 domain-containing protein	A5LH26	Enterobacteria_phage	1.8e-94	100.0
AVF99083.1\|850245_852345_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	0.0e+00	99.6
AVF99084.1\|852341_852554_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
AVF99085.1\|852553_854062_+\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	1.6e-289	99.8
AVF99086.1\|854006_856034_+	peptidase S14	A5LH30	Enterobacteria_phage	0.0e+00	99.7
AVF99087.1\|856075_856444_+	DUF2190 domain-containing protein	K7PLV6	Enterobacteria_phage	9.7e-52	100.0
AVF99088.1\|856436_856712_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
AVF99089.1\|856723_857314_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.2e-81	80.1
AVF99090.1\|857310_857712_+\|tail	phage tail protein	A0A291AWY2	Escherichia_phage	2.4e-72	99.2
AVF99091.1\|857722_858466_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.6e-130	98.0
AVG02775.1\|858526_858913_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	3.3e-66	100.0
AVF99092.1\|858921_859251_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
AVF99093.1\|859222_862288_+\|tail	phage tail tape measure protein	K7PKI9	Enterobacteria_phage	0.0e+00	98.3
AVF99094.1\|862287_862617_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
AVF99095.1\|862626_863325_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	6.6e-134	99.6
AVF99096.1\|863329_864073_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.2e-150	98.0
AVF99097.1\|863970_864618_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.5e-111	95.8
AVF99098.1\|864678_868092_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.0
AVF99099.1\|868152_870525_+\|tail	phage tail protein	A0A1X7QGG5	Escherichia_phage	1.4e-167	69.3
AVF99100.1\|870524_870806_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	1.6e-17	47.8
AVF99101.1\|870815_871856_+	peptidase S74	A0A0E3M4A9	Enterobacteria_phage	1.4e-124	67.3
AVG02776.1\|871898_872192_+	hypothetical protein	NA	NA	NA	NA
AVF99102.1\|872419_873010_-	DNA invertase	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
AVF99103.1\|873326_873560_-	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3

DBSCAN-SWA_3

1418008 : 1424315

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVF99631.1\|1418008_1418554_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.5e-50	57.3
AVF99632.1\|1418558_1419437_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.1e-106	64.1
AVF99633.1\|1419495_1420395_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.6e-29	35.6
AVF99634.1\|1420394_1421480_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.7e-100	53.6
AVF99635.1\|1421852_1422746_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	1.0e-46	42.0
AVF99636.1\|1422920_1424315_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	8.3e-19	32.2

DBSCAN-SWA_4

1461418 : 1575367

118

Enterobacteria_phage(40.0%)

lysis,holin,head,portal,terminase,transposase,capsid,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVF99666.1\|1461418_1462792_-\|transposase	IS4 family transposase ISEc13	NA	NA	NA	NA
AVF99667.1\|1462808_1463024_+	hypothetical protein	NA	NA	NA	NA
AVG02809.1\|1463203_1463260_-	hypothetical protein	NA	NA	NA	NA
AVF99668.1\|1463538_1464786_+	multidrug transporter subunit MdtA	NA	NA	NA	NA
AVF99669.1\|1464785_1467908_+	multidrug transporter subunit MdtB	NA	NA	NA	NA
AVF99670.1\|1467908_1470986_+	multidrug transporter subunit MdtC	NA	NA	NA	NA
AVF99671.1\|1470986_1472402_+	multidrug transporter subunit MdtD	NA	NA	NA	NA
AVF99672.1\|1472398_1473802_+	two-component system sensor histidine kinase BaeA	W8CYF6	Bacillus_phage	7.0e-34	29.8
AVF99673.1\|1473798_1474521_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	3.7e-31	33.6
AVF99674.1\|1474700_1475033_+	DUF1508 domain-containing protein	NA	NA	NA	NA
AVF99675.1\|1475179_1476541_+	peptidase	Q6DW11	Phage_TP	1.9e-217	99.7
AVG02810.1\|1477040_1477358_-	hypothetical protein	NA	NA	NA	NA
AVF99676.1\|1477773_1478673_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.3e-12	29.0
AVF99677.1\|1478754_1479534_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
AVF99678.1\|1479633_1480674_-	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
AVF99679.1\|1482079_1482364_-	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
AVF99680.1\|1482394_1482847_-	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
AVF99681.1\|1482856_1484119_-	tagatose-bisphosphate aldolase subunit GatZ	NA	NA	NA	NA
AVF99682.1\|1484147_1485002_-	tagatose bisphosphate family class II aldolase	NA	NA	NA	NA
AVF99683.1\|1485228_1486281_-	fructose-bisphosphate aldolase	NA	NA	NA	NA
AVF99684.1\|1486537_1487815_+	MFS transporter	NA	NA	NA	NA
AVF99685.1\|1487811_1488816_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	2.0e-14	28.7
AVF99686.1\|1488812_1489778_+	sugar kinase	NA	NA	NA	NA
AVF99687.1\|1489751_1490498_-	GntR family transcriptional regulator	NA	NA	NA	NA
AVF99688.1\|1490549_1491368_-	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	1.9e-23	38.0
AVF99689.1\|1491432_1492233_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
AVF99690.1\|1492229_1493018_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
AVF99691.1\|1493240_1493513_-	transcriptional regulator	NA	NA	NA	NA
AVF99692.1\|1493633_1494458_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
AVF99693.1\|1494676_1495015_+	nickel/cobalt homeostasis protein RcnB	NA	NA	NA	NA
AVF99694.1\|1495201_1496575_+\|transposase	IS4 family transposase ISEc13	NA	NA	NA	NA
AVF99695.1\|1496654_1497689_-	adhesin	NA	NA	NA	NA
AVF99696.1\|1497704_1500185_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
AVF99697.1\|1500200_1500875_-	fimbrial assembly protein	NA	NA	NA	NA
AVF99698.1\|1500955_1501498_-	hypothetical protein	NA	NA	NA	NA
AVF99699.1\|1502328_1503438_-	protein mrp	NA	NA	NA	NA
AVF99700.1\|1503569_1505603_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	2.3e-54	27.4
AVF99701.1\|1505743_1509532_+	DUF4132 domain-containing protein	NA	NA	NA	NA
AVF99702.1\|1509541_1513174_+	DUF4132 domain-containing protein	NA	NA	NA	NA
AVF99703.1\|1514182_1515271_+	MoxR family ATPase	NA	NA	NA	NA
AVF99704.1\|1515281_1517561_+	hypothetical protein	NA	NA	NA	NA
AVF99705.1\|1517553_1518690_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.6e-161	97.1
AVF99706.1\|1518686_1520690_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.2
AVF99707.1\|1520814_1521276_+	hypothetical protein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
AVF99708.1\|1521316_1521787_-	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
AVF99709.1\|1521833_1522553_-	DNA-binding response regulator	NA	NA	NA	NA
AVF99710.1\|1522549_1524235_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
AVF99711.1\|1524749_1524998_+	damage-inducible protein DinI	H6WZN4	Escherichia_phage	1.8e-30	84.0
AVF99712.1\|1525115_1525412_-	hypothetical protein	NA	NA	NA	NA
AVF99713.1\|1525421_1525700_-	hypothetical protein	A0A0E3GMJ7	Enterobacteria_phage	3.0e-21	46.2
AVF99714.1\|1525696_1527757_-\|tail	phage tail protein	A0A1X7QGG5	Escherichia_phage	1.2e-151	65.5
AVF99715.1\|1527908_1528508_-	Ail/Lom family protein	H6WZM8	Escherichia_phage	6.5e-106	93.0
AVF99716.1\|1528575_1532268_-\|tail	phage tail protein	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	85.6
AVF99717.1\|1532611_1533292_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	3.7e-113	92.9
AVF99718.1\|1533189_1533933_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	6.1e-146	96.4
AVF99719.1\|1533938_1534637_-\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	7.6e-130	97.0
AVF99720.1\|1534636_1534966_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
AVF99721.1\|1534962_1537539_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	84.6
AVF99722.1\|1537519_1537933_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
AVF99723.1\|1537959_1538391_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	67.4
AVF99724.1\|1538409_1539156_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	5.6e-123	93.0
AVF99725.1\|1539163_1539559_-\|tail	phage tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
AVF99726.1\|1539555_1540131_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	3.7e-50	57.8
AVF99727.1\|1540146_1540500_-\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	1.9e-41	70.1
AVF99728.1\|1540492_1540876_-	DNA-packaging protein FI	NA	NA	NA	NA
AVF99729.1\|1540927_1541956_-\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	6.6e-114	61.9
AVF99730.1\|1542013_1542361_-\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	3.7e-21	54.8
AVF99731.1\|1542397_1543903_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.2e-100	53.7
AVF99732.1\|1543892_1545485_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	3.8e-185	61.3
AVF99733.1\|1545481_1545688_-\|tail	phage tail protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
AVF99734.1\|1545671_1547600_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	7.2e-263	66.5
AVF99735.1\|1547571_1548081_-\|terminase	terminase	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
AVF99736.1\|1548484_1548670_+	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	3.2e-19	90.4
AVF99737.1\|1548802_1548943_-	hypothetical protein	NA	NA	NA	NA
AVF99738.1\|1549651_1550173_-	DNA-binding protein	K7P7K9	Enterobacteria_phage	1.5e-93	100.0
AVF99739.1\|1550374_1550812_-\|lysis	lysis protein	A0A088CBQ1	Shigella_phage	2.3e-68	95.2
AVF99740.1\|1551110_1551644_-	lysozyme	Q6H9V6	Enterobacteria_phage	2.1e-100	95.5
AVG02811.1\|1551707_1552058_-	hypothetical protein	B6DZ91	Enterobacteria_phage	6.6e-50	90.2
AVF99741.1\|1552062_1552278_-\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
AVF99742.1\|1552353_1552623_-	DUF826 domain-containing protein	S5MW40	Escherichia_phage	1.8e-10	76.4
AVF99743.1\|1552660_1552843_-	DUF1378 domain-containing protein	A0A2R2Z345	Escherichia_phage	9.4e-24	91.5
AVF99744.1\|1552994_1554956_-	DUF1737 domain-containing protein	A0A0P0ZBH7	Stx2-converting_phage	5.1e-240	64.5
AVF99745.1\|1555726_1556440_-	AraC family transcriptional regulator	NA	NA	NA	NA
AVF99746.1\|1556574_1556772_-	TrmB family transcriptional regulator	S5MQK8	Escherichia_phage	2.6e-27	96.9
AVF99747.1\|1557050_1557668_-	hypothetical protein	NA	NA	NA	NA
AVF99748.1\|1557743_1558115_-	antitermination protein	Q8W638	Enterobacteria_phage	8.3e-35	59.2
AVF99749.1\|1558132_1559122_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.7e-194	99.4
AVF99750.1\|1559129_1559945_-	DNA-binding protein	U5P4K5	Shigella_phage	8.5e-149	99.3
AVF99751.1\|1560107_1560503_-	hypothetical protein	A0A0P0ZD39	Stx2-converting_phage	5.7e-66	98.4
AVF99752.1\|1560499_1560826_-	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	2.7e-53	98.1
AVF99753.1\|1560822_1561476_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.9e-127	99.5
AVF99754.1\|1561475_1561970_-	PerC family transcriptional regulator	A0A291AWV6	Escherichia_phage	7.3e-87	98.1
AVF99755.1\|1561966_1562785_-	helix-turn-helix domain-containing protein	A0A291AWW0	Escherichia_phage	5.2e-122	98.9
AVF99756.1\|1562781_1563006_-	hypothetical protein	A5LH70	Enterobacteria_phage	2.8e-38	98.6
AVF99757.1\|1563002_1564148_-	peptidase	A5LH69	Enterobacteria_phage	3.1e-173	83.5
AVF99758.1\|1564144_1564702_-	hypothetical protein	Q8SBF4	Shigella_phage	5.3e-94	94.1
AVF99759.1\|1564694_1564955_-	XRE family transcriptional regulator	K7PJQ8	Enterobacteria_phage	5.4e-41	100.0
AVF99760.1\|1564926_1565079_-	amino acid permease	NA	NA	NA	NA
AVF99761.1\|1565052_1565745_+	XRE family transcriptional regulator	S5FUZ3	Shigella_phage	6.4e-121	96.1
AVF99762.1\|1565824_1566079_+	hypothetical protein	A0A291AWY6	Escherichia_phage	2.7e-13	97.4
AVF99763.1\|1566180_1566375_-	hypothetical protein	A0A291AWX8	Escherichia_phage	7.1e-30	96.9
AVF99764.1\|1566447_1566810_+	hypothetical protein	U5P4J6	Shigella_phage	2.2e-56	94.2
AVF99765.1\|1566875_1567700_+	DUF2303 domain-containing protein	U5P439	Shigella_phage	6.0e-150	100.0
AVF99766.1\|1567827_1568364_+	HD family hydrolase	U5P0T3	Shigella_phage	4.8e-100	98.3
AVF99767.1\|1568354_1568717_+	hypothetical protein	K7PH61	Enterobacteria_phage	1.5e-65	96.7
AVF99768.1\|1568713_1568917_+	hypothetical protein	K7PLX1	Enterobacteria_phage	1.0e-31	98.5
AVF99769.1\|1568909_1569149_+	hypothetical protein	S5MQM0	Escherichia_phage	9.1e-35	96.2
AVF99770.1\|1569145_1569745_+	hypothetical protein	Q8VNQ2	Enterobacteria_phage	1.2e-104	94.5
AVG02812.1\|1569974_1570262_+	hypothetical protein	G9L6B3	Escherichia_phage	1.4e-53	97.9
AVF99771.1\|1570258_1570777_+	hypothetical protein	A0A088CE95	Shigella_phage	1.3e-65	74.6
AVF99772.1\|1570861_1571104_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	4.3e-32	87.5
AVF99773.1\|1571107_1571242_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	4.2e-21	93.2
AVF99774.1\|1571260_1571515_+	excisionase	Q859D3	Escherichia_coli_phage	3.3e-43	98.8
AVF99775.1\|1571548_1572835_+	DUF3596 domain-containing protein	A0A0N7KZF5	Stx2-converting_phage	9.3e-251	98.8
AVF99776.1\|1572870_1573557_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.9e-101	98.4
AVF99777.1\|1573616_1573724_+	hypothetical protein	NA	NA	NA	NA
AVF99778.1\|1573704_1574436_-	ABC transporter permease	NA	NA	NA	NA
AVF99779.1\|1574440_1575367_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-23	30.8

DBSCAN-SWA_5

1987629 : 2060722

Salmonella_phage(47.06%)

holin,head,terminase,transposase,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG00144.1\|1987629_1988370_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
AVG00145.1\|1988488_1989292_+	inositol monophosphatase	NA	NA	NA	NA
AVG00146.1\|1989436_1990291_+	alpha/beta hydrolase	NA	NA	NA	NA
AVG00147.1\|1990481_1991762_+	stationary phase inducible protein CsiE	NA	NA	NA	NA
AVG00148.1\|1991753_1992893_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
AVG00149.1\|1993262_1993685_+	DoxX family protein	NA	NA	NA	NA
AVG00150.1\|1993759_1995107_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.0e-74	52.1
AVG00151.1\|1995168_1996041_-	aldose 1-epimerase	NA	NA	NA	NA
AVG02823.1\|1996052_1997114_-	alcohol dehydrogenase	NA	NA	NA	NA
AVG00152.1\|1997179_1998178_-	ABC transporter permease	NA	NA	NA	NA
AVG00153.1\|1998202_1999714_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.0e-11	23.0
AVG00154.1\|1999736_2000720_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
AVG00155.1\|2000816_2004098_-	DUF5107 domain-containing protein	NA	NA	NA	NA
AVG00156.1\|2004215_2005409_+	ROK family protein	NA	NA	NA	NA
AVG00157.1\|2005472_2006726_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	7.8e-101	52.7
AVG00158.1\|2007053_2008244_+	flavohemoprotein	NA	NA	NA	NA
AVG00159.1\|2008288_2008627_-	nitrogen regulatory protein P-II 1	NA	NA	NA	NA
AVG00160.1\|2008687_2010022_-	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	3.9e-10	37.3
AVG00161.1\|2010011_2010725_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
AVG00162.1\|2010889_2012317_-	two component system sensor histidine kinase QseE/GlrK	W8CYF6	Bacillus_phage	6.7e-16	24.9
AVG00163.1\|2012892_2016780_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	6.5e-130	59.2
AVG00164.1\|2016794_2016944_-	phosphoribosylglycinamide synthetase	NA	NA	NA	NA
AVG00165.1\|2017037_2018594_+	lytic transglycosylase F	NA	NA	NA	NA
AVG00166.1\|2018590_2019127_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
AVG00167.1\|2019151_2019787_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
AVG00168.1\|2019995_2020844_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AVG00169.1\|2021156_2021423_+	hypothetical protein	A0A0M3ULK3	Salmonella_phage	3.5e-35	81.8
AVG00170.1\|2021723_2022569_+	hypothetical protein	NA	NA	NA	NA
AVG02824.1\|2022918_2023437_+\|tail	phage tail protein	A0A0F7LCR3	Escherichia_phage	3.1e-56	62.6
AVG00171.1\|2023436_2024039_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	1.0e-98	89.0
AVG00172.1\|2024010_2024448_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.4e-49	68.5
AVG00173.1\|2024449_2025136_-	hypothetical protein	A0A0M3ULD8	Salmonella_phage	3.7e-28	70.0
AVG00174.1\|2025135_2025816_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	2.9e-102	77.9
AVG00175.1\|2025812_2027012_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	8.3e-185	83.4
AVG00176.1\|2027011_2027365_-	hypothetical protein	A0A0M4R339	Salmonella_phage	9.0e-55	89.7
AVG00177.1\|2027364_2028117_-	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	2.9e-87	66.3
AVG00178.1\|2028174_2028747_-	DUF2335 domain-containing protein	NA	NA	NA	NA
AVG00179.1\|2029072_2029417_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	2.5e-33	86.8
AVG00180.1\|2029420_2030482_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	7.7e-158	81.7
AVG00181.1\|2030484_2030787_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	1.8e-48	91.0
AVG00182.1\|2030786_2031374_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	6.9e-84	88.5
AVG00183.1\|2031373_2033362_-	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	2.3e-272	74.7
AVG00184.1\|2033351_2033528_-	NTP pyrophosphohydrolase	A0A2H4J1A2	uncultured_Caudovirales_phage	1.4e-11	68.0
AVG00185.1\|2033539_2033992_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	6.1e-56	72.7
AVG00186.1\|2033995_2034436_-	DUF3277 domain-containing protein	A0A2H4J619	uncultured_Caudovirales_phage	4.6e-56	74.7
AVG00187.1\|2034446_2035592_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	8.8e-160	73.5
AVG00188.1\|2035595_2036159_-	hypothetical protein	A0A0M4R331	Salmonella_phage	1.3e-79	75.7
AVG00189.1\|2036133_2036523_-\|head,tail	head-tail adaptor	A0A0M3ULK0	Salmonella_phage	3.3e-66	95.3
AVG00190.1\|2036509_2037064_-	hypothetical protein	A0A0M4S631	Salmonella_phage	2.6e-80	83.7
AVG00191.1\|2037060_2037468_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	8.7e-70	95.6
AVG00192.1\|2037433_2037655_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	7.7e-12	68.6
AVG00193.1\|2037696_2038638_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	2.9e-156	87.2
AVG00194.1\|2038649_2039156_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	1.1e-69	79.3
AVG00195.1\|2039159_2040380_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.2e-199	87.8
AVG00196.1\|2040394_2040925_-\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	1.5e-82	84.6
AVG00197.1\|2041019_2042486_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.8e-261	92.0
AVG00198.1\|2042485_2044108_-	TerL protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	95.4
AVG00199.1\|2044110_2044683_-\|terminase	terminase small subunit	A0A2H4J480	uncultured_Caudovirales_phage	6.1e-61	69.6
AVG00200.1\|2044744_2045269_-	hypothetical protein	K7P6W1	Enterobacteria_phage	1.3e-41	65.4
AVG00201.1\|2045252_2045729_-	lysozyme	Q8SBE0	Shigella_phage	2.1e-86	96.2
AVG00202.1\|2045732_2046074_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.6e-53	92.8
AVG00203.1\|2046519_2046861_-	hypothetical protein	NA	NA	NA	NA
AVG00204.1\|2046892_2047315_-	antitermination protein	Q8W638	Enterobacteria_phage	8.8e-41	63.3
AVG00205.1\|2047596_2049789_-	replication protein	B6SCY1	Bacteriophage	2.7e-173	71.4
AVG00206.1\|2049792_2050005_-	XRE family transcriptional regulator	A0A0R6PHL1	Moraxella_phage	7.9e-06	42.9
AVG00207.1\|2050125_2050749_+	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	3.3e-36	44.8
AVG00208.1\|2051528_2052431_+	hypothetical protein	Q3LZP9	Bacteriophage	6.1e-07	54.4
AVG00209.1\|2052433_2053735_+	DUF2800 domain-containing protein	B6SCX9	Bacteriophage	2.3e-132	55.7
AVG00210.1\|2053750_2054299_+	DUF2815 domain-containing protein	Q775A5	Bordetella_phage	1.6e-66	65.9
AVG02825.1\|2054350_2054992_+	hypothetical protein	H6WRY3	Salmonella_phage	1.8e-69	64.1
AVG00211.1\|2054985_2055675_-	hypothetical protein	NA	NA	NA	NA
AVG00212.1\|2055736_2057800_+	DNA polymerase	Q775A3	Bordetella_phage	7.9e-276	67.8
AVG00213.1\|2057805_2058021_+	hypothetical protein	NA	NA	NA	NA
AVG00214.1\|2058017_2058317_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	5.5e-29	64.2
AVG00215.1\|2058306_2058576_+	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	3.0e-26	65.9
AVG00216.1\|2058581_2059292_-	hypothetical protein	NA	NA	NA	NA
AVG00217.1\|2059330_2060722_+	ATP-dependent helicase	Q3LZN8	Bacteriophage	6.0e-211	72.8

DBSCAN-SWA_6

2190201 : 2197341

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG00344.1\|2190201_2192763_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	2.7e-31	20.8
AVG00345.1\|2192868_2193525_+	serine/threonine protein phosphatase	A0A077SLQ6	Escherichia_phage	6.2e-49	45.2
AVG00346.1\|2193575_2194343_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	9.7e-70	57.4
AVG00347.1\|2194538_2195447_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.9e-117	76.2
AVG00348.1\|2195443_2196706_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
AVG00349.1\|2196702_2197341_+	class II aldolase	A0A077SK32	Escherichia_phage	2.8e-83	75.0

DBSCAN-SWA_7

4381297 : 4465420

101

Shigella_phage(53.03%)

plate,holin,head,protease,terminase,portal,transposase,capsid,integrase,tail

attL 4423942:4423990|attR 4464881:4464929

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG02319.1\|4381297_4382644_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AVG02320.1\|4382646_4383171_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AVG02911.1\|4383167_4384448_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AVG02321.1\|4384464_4385514_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AVG02322.1\|4385477_4387337_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AVG02323.1\|4387324_4387750_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AVG02324.1\|4387754_4389239_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AVG02325.1\|4389261_4389765_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AVG02326.1\|4390470_4390989_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AVG02327.1\|4391209_4393441_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	8.0e-24	25.3
AVG02328.1\|4393453_4394218_+	DUF4123 domain-containing protein	NA	NA	NA	NA
AVG02329.1\|4394745_4394919_+	DUF3304 domain-containing protein	NA	NA	NA	NA
AVG02330.1\|4394888_4395209_+	DUF3304 domain-containing protein	NA	NA	NA	NA
AVG02912.1\|4395223_4395748_+	DUF3304 domain-containing protein	NA	NA	NA	NA
AVG02331.1\|4395732_4396275_+	DUF3304 domain-containing protein	NA	NA	NA	NA
AVG02332.1\|4396259_4398353_+	hypothetical protein	NA	NA	NA	NA
AVG02333.1\|4399620_4400124_+	hypothetical protein	NA	NA	NA	NA
AVG02334.1\|4400190_4400703_+	integrating conjugative element protein	NA	NA	NA	NA
AVG02335.1\|4400973_4401744_-	amidohydrolase	NA	NA	NA	NA
AVG02336.1\|4401897_4402371_+	C-lysozyme inhibitor	NA	NA	NA	NA
AVG02337.1\|4402413_4404858_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
AVG02338.1\|4405097_4405676_+	phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
AVG02339.1\|4405880_4406654_+	class II glutamine amidotransferase	NA	NA	NA	NA
AVG02340.1\|4406624_4407365_-	transpeptidase	NA	NA	NA	NA
AVG02341.1\|4407667_4408426_+	peptidoglycan endopeptidase	A0A1V0DZX6	Clostridioides_phage	1.2e-19	37.7
AVG02342.1\|4408601_4409099_+\|transposase	transposase	NA	NA	NA	NA
AVG02343.1\|4409214_4410954_-	flagellar type III secretion system protein FlhA	NA	NA	NA	NA
AVG02913.1\|4410913_4411684_+	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
AVG02344.1\|4411754_4412810_+	DNA polymerase IV	NA	NA	NA	NA
AVG02345.1\|4412861_4413155_+	antitoxin YafN	NA	NA	NA	NA
AVG02346.1\|4413157_4413556_+	type II toxin-antitoxin system YafO family toxin	NA	NA	NA	NA
AVG02347.1\|4413565_4414018_+	GNAT family N-acetyltransferase	A0A1X9I687	Streptococcus_phage	1.3e-05	27.5
AVG02348.1\|4414195_4415347_+	RNA ligase RtcB family protein	A0A222ZKP1	Mycobacterium_phage	2.5e-29	30.1
AVG02349.1\|4415343_4415958_+	peptide chain release factor H	NA	NA	NA	NA
AVG02350.1\|4416013_4417471_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA
AVG02351.1\|4417731_4418190_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
AVG02352.1\|4418281_4419526_+	esterase FrsA	NA	NA	NA	NA
AVG02353.1\|4419583_4419985_+	sigma factor-binding protein Crl	NA	NA	NA	NA
AVG02354.1\|4420085_4421141_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	3.5e-118	60.6
AVG02355.1\|4421429_4422533_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
AVG02356.1\|4422544_4423798_+	gamma-glutamyl-phosphate reductase	A0A1X9I5D4	Streptococcus_phage	2.6e-96	47.5
4423942:4423990	attL	NA	NA	NA	NA
AVG02914.1\|4424002_4424941_-\|integrase	site-specific integrase	U5P434	Shigella_phage	4.7e-183	99.7
AVG02357.1\|4425042_4425393_-	DNA-binding protein	U5P4J3	Shigella_phage	4.9e-61	100.0
AVG02358.1\|4425392_4425698_-	hypothetical protein	U5P0J0	Shigella_phage	1.5e-50	99.0
AVG02359.1\|4425697_4426060_-	hypothetical protein	U5P092	Shigella_phage	2.1e-67	100.0
AVG02360.1\|4426050_4426587_-	HD family hydrolase	S5MW55	Escherichia_phage	8.2e-100	98.9
AVG02361.1\|4426714_4427539_-	hypothetical protein	U5P439	Shigella_phage	5.0e-149	99.6
AVG02362.1\|4427604_4427967_-	hypothetical protein	Q8SBF8	Shigella_phage	2.5e-60	99.2
AVG02363.1\|4428039_4428234_+	hypothetical protein	A0A291AWX8	Escherichia_phage	2.5e-30	98.4
AVG02364.1\|4428335_4428590_-	hypothetical protein	A0A291AWY6	Escherichia_phage	1.4e-12	94.9
AVG02365.1\|4428669_4429362_-	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	8.3e-121	96.1
AVG02915.1\|4429335_4429488_+	amino acid permease	NA	NA	NA	NA
AVG02366.1\|4429459_4429720_+	XRE family transcriptional regulator	K7PJQ8	Enterobacteria_phage	5.4e-41	100.0
AVG02367.1\|4429712_4430264_+	hypothetical protein	K7PGU3	Enterobacteria_phage	1.0e-97	95.1
AVG02368.1\|4430260_4431409_+	peptidase	A0A0P0ZE80	Stx2-converting_phage	3.1e-165	80.2
AVG02369.1\|4431405_4431630_+	hypothetical protein	A5LH70	Enterobacteria_phage	5.7e-39	100.0
AVG02370.1\|4431626_4432445_+	helix-turn-helix domain-containing protein	A0A291AWW0	Escherichia_phage	8.9e-122	98.9
AVG02371.1\|4432441_4432936_+	PerC family transcriptional regulator	K7PJR0	Enterobacteria_phage	7.3e-87	98.8
AVG02372.1\|4432935_4433589_+	phage N-6-adenine-methyltransferase	A0A0P0ZCC0	Stx2-converting_phage	2.4e-125	98.6
AVG02373.1\|4433585_4433912_+	LexA family transcriptional regulator	U5P451	Shigella_phage	5.9e-53	99.1
AVG02374.1\|4433908_4434298_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
AVG02375.1\|4434317_4435115_+	DNA-binding protein	A0A0P0ZCS0	Stx2-converting_phage	4.4e-150	99.6
AVG02376.1\|4435122_4436112_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.4e-193	99.1
AVG02377.1\|4436129_4436471_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	4.7e-61	99.1
AVG02916.1\|4436492_4436954_-	hypothetical protein	A0A0P0ZCX2	Stx2-converting_phage	1.2e-72	99.3
AVG02378.1\|4437024_4438056_-	hypothetical protein	A0A0P0ZDC5	Stx2-converting_phage	1.3e-189	100.0
AVG02379.1\|4438336_4438663_+\|holin	phage holin, lambda family	U5P0K7	Shigella_phage	1.4e-57	100.0
AVG02380.1\|4438666_4439143_+	lysozyme	S5FV07	Shigella_phage	4.1e-87	97.5
AVG02381.1\|4439126_4439519_+	DUF2570 domain-containing protein	Q8SBD9	Shigella_phage	3.7e-57	91.5
AVG02382.1\|4439702_4440053_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	1.2e-62	94.8
AVG02383.1\|4440169_4440673_+\|terminase	phage terminase small subunit P27 family	U5P067	Shigella_phage	2.3e-88	99.4
AVG02384.1\|4440669_4442403_+\|terminase	terminase	U5P0Q5	Shigella_phage	0.0e+00	98.6
AVG02385.1\|4442414_4442597_+	hypothetical protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
AVG02386.1\|4442596_4443838_+\|portal	phage portal protein	U5P411	Shigella_phage	2.9e-241	98.8
AVG02387.1\|4443779_4444466_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.5e-125	99.6
AVG02388.1\|4444480_4445686_+\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	3.1e-224	99.8
AVG02389.1\|4445735_4445936_+	hypothetical protein	S5FNU1	Shigella_phage	1.7e-26	98.5
AVG02390.1\|4445938_4446262_+\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	1.1e-56	99.1
AVG02391.1\|4446258_4446669_+\|head,tail	head-tail adaptor protein	M1FJ87	Enterobacteria_phage	5.9e-74	97.8
AVG02392.1\|4446643_4447150_+	hypothetical protein	M1FPE2	Enterobacteria_phage	1.7e-91	100.0
AVG02393.1\|4447146_4447707_+	hypothetical protein	M1FQV7	Enterobacteria_phage	1.0e-105	100.0
AVG02394.1\|4447715_4447886_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
AVG02395.1\|4447869_4449366_+\|tail	phage tail protein	U5P0H3	Shigella_phage	1.0e-277	99.6
AVG02396.1\|4449365_4449722_+\|tail	phage tail protein	U5P076	Shigella_phage	2.0e-62	99.2
AVG02397.1\|4449721_4449991_+\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	3.5e-43	100.0
AVG02398.1\|4449957_4450140_+	hypothetical protein	NA	NA	NA	NA
AVG02399.1\|4450132_4451968_+\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	2.9e-306	98.2
AVG02400.1\|4451986_4453357_+	DNA circularization protein	S5FUX4	Shigella_phage	1.1e-252	98.5
AVG02401.1\|4453353_4454433_+\|plate	baseplate protein	U5P0H6	Shigella_phage	5.3e-207	100.0
AVG02402.1\|4454432_4454981_+\|plate	phage baseplate assembly protein V	U5P081	Shigella_phage	5.1e-97	98.9
AVG02403.1\|4454977_4455406_+\|tail	phage tail protein	U5P0R9	Shigella_phage	1.7e-79	98.6
AVG02404.1\|4455392_4456451_+\|plate	phage baseplate protein	U5P424	Shigella_phage	2.8e-200	98.6
AVG02405.1\|4456441_4457026_+	DUF2313 domain-containing protein	O22003	Shigella_phage	1.6e-112	98.5
AVG02406.1\|4457029_4457680_+	hypothetical protein	S5FKM2	Shigella_phage	1.1e-114	98.6
AVG02407.1\|4457636_4458086_+\|tail	tail assembly chaperone	S5FXM8	Shigella_phage	6.9e-76	97.2
AVG02917.1\|4458857_4459670_-	acyltransferase	S5FNR8	Shigella_phage	1.4e-146	98.5
AVG02408.1\|4461935_4462193_-	hypothetical protein	O21944	Shigella_phage	2.1e-45	98.8
AVG02409.1\|4462318_4463395_-	glucosyl transferase	O21944	Shigella_phage	2.6e-182	99.1
AVG02410.1\|4463391_4464321_-	glycosyltransferase	S5FKN0	Shigella_phage	7.9e-175	99.7
AVG02411.1\|4464317_4464680_-	GtrA family protein	U5P0S6	Shigella_phage	2.3e-58	99.2
AVG02412.1\|4465081_4465420_+	DUF4102 domain-containing protein	E5AGD0	Erwinia_phage	4.8e-21	47.7
4464881:4464929	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP014110

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

29048 : 57264

Escherichia_phage(33.33%)

transposase,integrase

attL 30713:30733|attR 55712:55732

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVF98085.1\|29048_30221_+\|transposase	IS21-like element IS21 family transposase	U5N3F9	Enterobacteria_phage	3.5e-228	99.5
AVF98086.1\|30217_31018_+	AAA family ATPase	U5N3V8	Enterobacteria_phage	1.9e-145	99.6
30713:30733	attL	NA	NA	NA	NA
AVF98174.1\|31011_31842_-	DUF1281 domain-containing protein	NA	NA	NA	NA
AVF98087.1\|31879_32149_-	hypothetical protein	NA	NA	NA	NA
AVF98088.1\|32260_33481_-\|transposase	ISL3-like element ISEc53 family transposase	NA	NA	NA	NA
AVF98089.1\|33499_34018_-	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
AVF98090.1\|34152_34401_+	DinI family protein	Q2A098	Sodalis_phage	1.2e-13	48.0
AVF98091.1\|34397_34835_+	peptidase	A0A1W6JNS2	Morganella_phage	1.1e-25	47.6
AVF98092.1\|36109_36538_-	plasmid stability protein	NA	NA	NA	NA
AVF98093.1\|36506_37478_-	plasmid segregation protein parM	A0A222YXF2	Escherichia_phage	9.7e-67	42.9
AVF98094.1\|37706_38351_+	chromosome partitioning protein ParA	A0A222YXS3	Escherichia_phage	8.8e-40	43.5
AVF98095.1\|38344_38620_+	CopG family transcriptional regulator	NA	NA	NA	NA
AVF98096.1\|38757_39567_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	7.8e-54	95.5
AVF98097.1\|39567_39873_-	toxin CcdB	NA	NA	NA	NA
AVF98098.1\|39874_40093_-	antitoxin CcdA	NA	NA	NA	NA
AVF98099.1\|40730_40958_+	hypothetical protein	NA	NA	NA	NA
AVF98100.1\|41744_43118_-\|transposase	IS4 family transposase ISEc13	Q9JMP3	Wolbachia_phage	2.1e-43	29.1
AVF98101.1\|43134_43350_+	hypothetical protein	NA	NA	NA	NA
AVF98102.1\|43972_44614_+	hypothetical protein	NA	NA	NA	NA
AVF98103.1\|44670_44877_+	hypothetical protein	NA	NA	NA	NA
AVF98104.1\|44990_45479_+	hypothetical protein	NA	NA	NA	NA
AVF98105.1\|45788_46766_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	6.1e-101	59.5
AVF98106.1\|47008_47749_-	recombinase	I3WFA4	Macacine_betaherpesvirus	1.6e-24	57.6
AVF98107.1\|47869_48058_-	serine/threonine protein kinase	NA	NA	NA	NA
AVF98108.1\|48424_49594_+	hypothetical protein	NA	NA	NA	NA
AVF98109.1\|50440_50713_-	transcriptional regulator	NA	NA	NA	NA
AVF98110.1\|51955_53926_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
AVF98111.1\|53932_54724_+	DUF4198 domain-containing protein	NA	NA	NA	NA
AVF98112.1\|55462_56245_-\|transposase	transposase	A0A2L1IVB6	Escherichia_phage	2.0e-139	100.0
55712:55732	attR	NA	NA	NA	NA
AVF98113.1\|56241_57264_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	3.2e-201	99.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP014111

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP014110

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection