CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP026924	Agrobacterium tumefaciens strain 1D1609 chromosome I, complete sequence	0 crisprs	cas3,WYL,csa3,DEDDh	6
CP026925	Agrobacterium tumefaciens strain 1D1609 chromosome II, complete sequence	0 crisprs	DEDDh,csa3	4
CP026927	Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609a, complete sequence	0 crisprs	NA	1
CP026926	Agrobacterium tumefaciens strain 1D1609 plasmid pTi1D1609, complete sequence	0 crisprs	NA	1
CP026928	Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

560995 : 570139

Rhizobium_phage(37.5%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH40592.1\|560995_561439_+	nuclease	G8DH70	Emiliania_huxleyi_virus	1.4e-25	49.1
AVH40593.1\|561534_562014_-	hypothetical protein	NA	NA	NA	NA
AVH40594.1\|562096_562597_-	hypothetical protein	R9TS95	Rhizobium_phage	5.6e-42	55.7
AVH40595.1\|562599_562926_-	hypothetical protein	R9TN87	Rhizobium_phage	2.9e-39	83.3
AVH40596.1\|562948_563626_-	peptidoglycan-binding domain 1 protein	R9TRQ2	Rhizobium_phage	5.1e-123	94.2
AVH40597.1\|564033_564486_-	hypothetical protein	F8TUT1	EBPR_podovirus	1.6e-08	50.0
AVH40598.1\|564485_565451_-\|tail	phage tail fiber protein	Q8HA60	Vibrio_phage	4.9e-10	34.1
AVH40599.1\|565447_565792_-	hypothetical protein	NA	NA	NA	NA
AVH40600.1\|565793_566747_-	hypothetical protein	V5YTB8	Pseudomonas_phage	1.9e-14	39.7
AVH40601.1\|566756_567023_-	hypothetical protein	NA	NA	NA	NA
AVH40602.1\|567132_567384_+	mRNA interferase RelE	NA	NA	NA	NA
AVH40603.1\|567394_567748_+	XRE family transcriptional regulator	NA	NA	NA	NA
AVH40604.1\|568021_570139_-	hypothetical protein	M4QPL5	Sulfitobacter_phage	4.6e-53	32.6

DBSCAN-SWA_2

1003265 : 1013018

Arthrobacter_phage(20.0%)

protease,tail,terminase,head,portal,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH41049.1\|1003265_1004525_+\|terminase	large terminase phage packaging protein	A0A0U4IJ26	Arthrobacter_phage	2.6e-72	42.3
AVH41050.1\|1004654_1004762_-	hypothetical protein	NA	NA	NA	NA
AVH41051.1\|1004972_1005611_+	chitinase	R9U4A9	Rhizobium_phage	6.2e-38	44.4
AVH41052.1\|1005654_1005978_+	stress responsive protein	NA	NA	NA	NA
AVH41053.1\|1006251_1007418_+\|head,portal	phage head portal protein	W8ECU7	Geobacillus_phage	6.6e-62	38.0
AVH41054.1\|1007613_1007934_+	hypothetical protein	NA	NA	NA	NA
AVH41055.1\|1007962_1008535_+\|head,protease	phage prohead protease	A0A0U2BX10	Paracoccus_phage	8.9e-28	44.5
AVH41056.1\|1008565_1009834_+\|capsid	phage phi-C31 major capsid gp36-like protein	Q3HQT0	Burkholderia_phage	3.0e-76	42.4
AVH41057.1\|1010012_1010582_+	hypothetical protein	NA	NA	NA	NA
AVH41058.1\|1010585_1010921_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AVH41059.1\|1010917_1011313_+	hypothetical protein	NA	NA	NA	NA
AVH41060.1\|1011320_1012520_-	MFS permease	NA	NA	NA	NA
AVH41061.1\|1012610_1013018_+\|tail	tail protein	NA	NA	NA	NA

DBSCAN-SWA_3

1532690 : 1541860

Ralstonia_phage(16.67%)

integrase,terminase

attL 1528145:1528161|attR 1546772:1546788

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1528145:1528161	attL	NA	NA	NA	NA
AVH41578.1\|1532690_1533833_+\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.4e-59	37.3
AVH41579.1\|1534105_1534309_+	hypothetical protein	NA	NA	NA	NA
AVH41580.1\|1534626_1535409_+	hypothetical protein	NA	NA	NA	NA
AVH41581.1\|1535596_1535854_+	hypothetical protein	NA	NA	NA	NA
AVH41582.1\|1535981_1536311_+	hypothetical protein	NA	NA	NA	NA
AVH41583.1\|1536467_1538132_+\|terminase	terminase	Q9MCV7	Escherichia_phage	2.0e-91	41.6
AVH41584.1\|1538143_1538407_+	hypothetical protein	NA	NA	NA	NA
AVH41585.1\|1538679_1539846_+	hypothetical protein	K7XS73	uncultured_Mediterranean_phage	2.1e-39	34.1
AVH41586.1\|1539847_1540126_+	hypothetical protein	A0A286S294	Klebsiella_phage	5.1e-05	34.4
AVH41587.1\|1540122_1540668_+	primosome assembly protein PriA	A0A2H4J6Z9	uncultured_Caudovirales_phage	4.2e-27	45.2
AVH41588.1\|1540651_1541860_+	hypothetical protein	A4JWZ9	Burkholderia_virus	4.3e-56	36.1
1546772:1546788	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1751359 : 1759912

uncultured_Mediterranean_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH41779.1\|1751359_1753003_-	lipoprotein	I3PV24	Clostridium_phage	1.2e-11	30.4
AVH41780.1\|1753270_1753924_-	protein-L-isoaspartate O-methyltransferase	A0A1J0MC37	Streptomyces_phage	1.0e-11	35.1
AVH41781.1\|1753920_1754691_-	stationary-phase survival protein	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.6e-24	30.3
AVH41782.1\|1754897_1756181_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.4e-97	45.8
AVH41783.1\|1756282_1757086_-	sec-independent protein translocase protein TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	9.9e-41	39.9
AVH41784.1\|1757082_1757847_-	sec-independent protein translocase protein TatB	NA	NA	NA	NA
AVH41785.1\|1758004_1758211_-	sec-independent protein translocase protein TatA	A0A1B1IVR9	uncultured_Mediterranean_phage	2.1e-08	69.8
AVH41786.1\|1758339_1759074_-	segregation and condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	1.3e-39	47.6
AVH41787.1\|1759063_1759912_-	segregation and condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.1e-34	34.2

DBSCAN-SWA_5

1779324 : 1807326

Rhizobium_phage(59.26%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH41802.1\|1779324_1779582_-	hypothetical protein	W6E8L8	Rhizobium_phage	1.3e-15	48.1
AVH41803.1\|1779578_1780658_-	hypothetical protein	W8EHB5	Pseudomonas_phage	3.1e-29	41.0
AVH41804.1\|1780750_1781995_-	hypothetical protein	NA	NA	NA	NA
AVH41805.1\|1782074_1783943_-	hypothetical protein	B4UTR2	Rhizobium_phage	5.0e-11	44.6
AVH41806.1\|1784016_1784385_-	hypothetical protein	NA	NA	NA	NA
AVH41807.1\|1784395_1785307_-	hypothetical protein	R9U0V1	Rhizobium_phage	2.1e-15	55.8
AVH41808.1\|1785318_1786149_-	hypothetical protein	L7TKX3	Rhizobium_phage	2.1e-49	36.2
AVH41809.1\|1786150_1787050_-	hypothetical protein	L7TN06	Rhizobium_phage	3.5e-71	46.7
AVH41810.1\|1787046_1787412_-	hypothetical protein	L7TJM2	Rhizobium_phage	1.9e-31	59.1
AVH41811.1\|1787408_1788065_-	hypothetical protein	L7TMF3	Rhizobium_phage	8.9e-32	42.4
AVH41812.1\|1788064_1788946_-	hypothetical protein	L7TRC2	Rhizobium_phage	1.9e-101	60.1
AVH41813.1\|1789254_1789818_-	hypothetical protein	L7TN02	Rhizobium_phage	9.7e-43	53.1
AVH41814.1\|1789817_1791455_-	hypothetical protein	A0A068C997	Rhizobium_phage	6.4e-103	57.6
AVH41815.1\|1791621_1792080_-	hypothetical protein	NA	NA	NA	NA
AVH41816.1\|1792152_1792587_-	hypothetical protein	L7TRB4	Rhizobium_phage	6.1e-37	54.5
AVH41817.1\|1792598_1793741_-	hypothetical protein	L7TKV9	Rhizobium_phage	5.1e-115	56.9
AVH41818.1\|1793767_1794250_-	hypothetical protein	L7TMZ9	Rhizobium_phage	8.3e-35	53.6
AVH41819.1\|1794246_1794579_-	hypothetical protein	NA	NA	NA	NA
AVH41820.1\|1794575_1795040_-	hypothetical protein	L7TME2	Rhizobium_phage	3.4e-46	63.0
AVH41821.1\|1795039_1795429_-	hypothetical protein	L7TRB1	Rhizobium_phage	3.3e-26	50.4
AVH41822.1\|1795428_1795620_-	hypothetical protein	NA	NA	NA	NA
AVH41823.1\|1795676_1796138_-	hypothetical protein	NA	NA	NA	NA
AVH41824.1\|1796149_1797118_-	hypothetical protein	A0A2H4J526	uncultured_Caudovirales_phage	4.4e-136	74.1
AVH41825.1\|1797121_1797601_-	hypothetical protein	A0A2H4J1G1	uncultured_Caudovirales_phage	1.6e-46	65.2
AVH41826.1\|1797613_1798765_-	hypothetical protein	A0A059VF71	Pseudomonas_phage	2.7e-47	39.1
AVH41827.1\|1798777_1799584_-	hypothetical protein	A0A1B0VMI8	Pseudomonas_phage	3.3e-36	41.7
AVH41828.1\|1799619_1799814_+	hypothetical protein	NA	NA	NA	NA
AVH41829.1\|1799810_1800467_-	hypothetical protein	A0A2K9V4K7	Staphylococcus_phage	8.1e-25	35.8
AVH41830.1\|1800549_1801371_-	hypothetical protein	L7TMD0	Rhizobium_phage	5.9e-65	48.9
AVH41831.1\|1801370_1802726_-	hypothetical protein	A0A2H4J4I9	uncultured_Caudovirales_phage	4.0e-111	49.4
AVH41832.1\|1802713_1802866_-	hypothetical protein	NA	NA	NA	NA
AVH41833.1\|1802869_1804354_-\|terminase	terminase	A0A1P8VVI4	Erythrobacter_phage	2.8e-97	43.6
AVH41834.1\|1804310_1804685_-	hypothetical protein	NA	NA	NA	NA
AVH41835.1\|1804998_1805259_-	hypothetical protein	NA	NA	NA	NA
AVH41836.1\|1805289_1805625_-	hypothetical protein	A0A088F6V5	Sulfitobacter_phage	1.6e-16	42.2
AVH41837.1\|1806124_1806895_-	hypothetical protein	A0A141GF38	Brucella_phage	1.3e-45	41.0
AVH41838.1\|1806891_1807326_-	hypothetical protein	A0A141GF37	Brucella_phage	1.7e-55	70.6

DBSCAN-SWA_6

1916119 : 1940732

Morganella_phage(20.0%)

holin,tail,terminase,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH41964.1\|1916119_1916845_-\|holin	phosphatidylcholine synthase	NA	NA	NA	NA
AVH41965.1\|1917054_1918263_+	2-octaprenyl-6-methoxyphenol hydroxylase	NA	NA	NA	NA
AVH41966.1\|1918246_1919185_-	malonate transporter	NA	NA	NA	NA
AVH41967.1\|1919219_1919981_-	cytochrome c-type biogenesis protein	NA	NA	NA	NA
AVH41968.1\|1920587_1921853_-	hypothetical protein	NA	NA	NA	NA
AVH41969.1\|1922009_1922450_-	lactoylglutathione lyase	NA	NA	NA	NA
AVH41970.1\|1922642_1923221_+	cold shock protein	A0A1W6JNX5	Morganella_phage	5.1e-07	42.4
AVH41971.1\|1923220_1923703_+	signal peptide protein	NA	NA	NA	NA
AVH41972.1\|1923763_1924012_-	hypothetical protein	NA	NA	NA	NA
AVH41973.1\|1924225_1924495_+	hypothetical protein	NA	NA	NA	NA
AVH41974.1\|1924654_1925851_+	UDP-glucose:ceramide glycosyltransferase	NA	NA	NA	NA
AVH41975.1\|1926142_1926592_-	hypothetical protein	NA	NA	NA	NA
AVH41976.1\|1926598_1927717_-	hypothetical protein	NA	NA	NA	NA
AVH41977.1\|1927860_1928187_-	succinoglycan biosynthesis protein ExoI	NA	NA	NA	NA
AVH41978.1\|1928293_1928482_-	hypothetical protein	NA	NA	NA	NA
AVH41979.1\|1928481_1928937_-	hypothetical protein	NA	NA	NA	NA
AVH41980.1\|1929037_1929592_-	hypothetical protein	NA	NA	NA	NA
AVH41981.1\|1929789_1930566_-	hypothetical protein	NA	NA	NA	NA
AVH41982.1\|1930610_1931042_-	hypothetical protein	NA	NA	NA	NA
AVH41983.1\|1931265_1933971_-\|tail	tail protein	A0A291AUM6	Sinorhizobium_phage	6.0e-58	44.7
AVH41984.1\|1933982_1935617_-\|terminase	terminase	A0A286S1M9	Klebsiella_phage	5.1e-36	30.1
AVH41985.1\|1935609_1936020_-\|terminase	terminase	NA	NA	NA	NA
AVH41986.1\|1936016_1936334_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AVH41987.1\|1936330_1936762_-	hypothetical protein	NA	NA	NA	NA
AVH41988.1\|1936758_1937184_-	hypothetical protein	NA	NA	NA	NA
AVH41989.1\|1937173_1937476_-	DNA-packaging protein	NA	NA	NA	NA
AVH41990.1\|1937818_1937932_+	hypothetical protein	NA	NA	NA	NA
AVH41991.1\|1937893_1938205_-	hypothetical protein	NA	NA	NA	NA
AVH41992.1\|1938201_1938543_-	HNH endonuclease	Q38456	Bacillus_phage	2.2e-18	47.2
AVH41993.1\|1938539_1939157_-	hypothetical protein	NA	NA	NA	NA
AVH41994.1\|1939160_1940732_-\|capsid	capsid protein	A0A141GEW2	Brucella_phage	2.4e-35	32.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP026925

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

659880 : 668523

Salmonella_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH43640.1\|659880_661785_-	cobyrinic acid synthase	J9Q7G6	Salmonella_phage	4.3e-18	30.3
AVH43641.1\|661892_662882_-	cobalamin biosynthesis protein	L7TKP0	Rhizobium_phage	4.9e-42	32.5
AVH43642.1\|662950_663586_-	molecular chaperone DnaJ	A0A2P1ELC3	Moumouvirus	4.0e-05	42.9
AVH43643.1\|663700_663982_+	stress induced morphogen	NA	NA	NA	NA
AVH43644.1\|664094_665159_+\|transposase	transposase	E5E3P6	Burkholderia_phage	4.4e-28	30.4
AVH43645.1\|665451_666585_-	3-dehydroquinate synthase	A9YVT7	Ostreococcus_tauri_virus	2.6e-26	30.2
AVH43646.1\|666590_667172_-	shikimate kinase	NA	NA	NA	NA
AVH43647.1\|667360_667534_+	signal peptide protein	NA	NA	NA	NA
AVH43648.1\|667530_668523_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	1.8e-36	31.0

DBSCAN-SWA_2

1058195 : 1068774

Rhizobium_phage(28.57%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH44011.1\|1058195_1060313_+	hypothetical protein	M4QPL5	Sulfitobacter_phage	4.0e-49	31.5
AVH44012.1\|1060567_1060705_+	hypothetical protein	NA	NA	NA	NA
AVH44013.1\|1060682_1060997_-	hypothetical protein	NA	NA	NA	NA
AVH44014.1\|1061019_1061304_-	hypothetical protein	NA	NA	NA	NA
AVH44015.1\|1061428_1061743_+	hypothetical protein	NA	NA	NA	NA
AVH44016.1\|1061752_1062706_+	hypothetical protein	V5YTB8	Pseudomonas_phage	1.9e-14	39.7
AVH44017.1\|1062707_1063052_+	hypothetical protein	NA	NA	NA	NA
AVH44018.1\|1063048_1064014_+\|tail	phage tail fiber protein	Q8HA60	Vibrio_phage	4.9e-10	33.5
AVH44019.1\|1064013_1064466_+	hypothetical protein	A0A291AUN7	Sinorhizobium_phage	1.2e-11	40.8
AVH44020.1\|1064524_1064710_+	hypothetical protein	NA	NA	NA	NA
AVH44021.1\|1064867_1065545_+	peptidoglycan-binding domain 1 protein	R9TRQ2	Rhizobium_phage	1.3e-123	94.2
AVH44022.1\|1065567_1065894_+	hypothetical protein	R9TN87	Rhizobium_phage	9.5e-43	92.6
AVH44023.1\|1065896_1066070_+	hypothetical protein	NA	NA	NA	NA
AVH44024.1\|1066131_1066458_+	hypothetical protein	NA	NA	NA	NA
AVH44025.1\|1066503_1067058_-	hypothetical protein	NA	NA	NA	NA
AVH44026.1\|1067057_1067519_-	hypothetical protein	NA	NA	NA	NA
AVH44027.1\|1068130_1068490_-	hypothetical protein	NA	NA	NA	NA
AVH44028.1\|1068486_1068774_-	hypothetical protein	A0A141GEY3	Brucella_phage	5.5e-10	46.1

DBSCAN-SWA_3

1442537 : 1483159

Leptospira_phage(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH44338.1\|1442537_1445162_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpB	K4FB40	Cronobacter_phage	1.0e-118	37.4
AVH44339.1\|1445268_1447215_-	peptidase M24	G9BW84	Planktothrix_phage	5.2e-19	43.3
AVH44340.1\|1454596_1454863_+\|transposase	transposase	NA	NA	NA	NA
AVH44341.1\|1454883_1455699_+\|transposase	transposase	S5WIU1	Leptospira_phage	1.1e-44	39.0
AVH44342.1\|1455608_1455902_-	hypothetical protein	NA	NA	NA	NA
AVH44343.1\|1456515_1457226_-	hypothetical protein	NA	NA	NA	NA
AVH44344.1\|1457296_1457743_-	hypothetical protein	NA	NA	NA	NA
AVH44345.1\|1457848_1458280_+\|transposase	transposase	NA	NA	NA	NA
AVH44346.1\|1458399_1458564_-	hypothetical protein	NA	NA	NA	NA
AVH44347.1\|1458708_1459278_-	invertase	A0A219YA40	Aeromonas_phage	4.9e-34	48.3
AVH44348.1\|1459912_1460167_+	prevent-host-death protein	NA	NA	NA	NA
AVH44349.1\|1460758_1461649_-	LysR family transcriptional regulator	NA	NA	NA	NA
AVH44350.1\|1461761_1462934_+	mandelate racemase/muconate lactonizing protein	NA	NA	NA	NA
AVH44351.1\|1462944_1463970_-	LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor	NA	NA	NA	NA
AVH44352.1\|1464207_1465188_+	MFS transporter	NA	NA	NA	NA
AVH44353.1\|1465261_1465741_+	membrane protein	NA	NA	NA	NA
AVH44354.1\|1465779_1467279_+	tripartite tricarboxylate transporter TctA	NA	NA	NA	NA
AVH44355.1\|1467423_1468083_+	hypothetical protein	NA	NA	NA	NA
AVH44356.1\|1468513_1468669_+	hypothetical protein	NA	NA	NA	NA
AVH44357.1\|1468675_1469368_-	hypothetical protein	NA	NA	NA	NA
AVH44358.1\|1469467_1469707_+	hypothetical protein	NA	NA	NA	NA
AVH44359.1\|1469764_1470985_+	DNA-binding protein	NA	NA	NA	NA
AVH44360.1\|1470994_1471645_+	glutamine cyclotransferase	NA	NA	NA	NA
AVH44361.1\|1471641_1472280_+	hypothetical protein	NA	NA	NA	NA
AVH44362.1\|1473717_1474251_+	hypothetical protein	NA	NA	NA	NA
AVH44363.1\|1474257_1475187_-	hypothetical protein	NA	NA	NA	NA
AVH44364.1\|1475317_1477582_+	type VI secretion system secreted protein VgrG	A0A077K8Q4	Ralstonia_phage	9.3e-36	27.3
AVH44365.1\|1477595_1478711_+	DUF2169 family protein	NA	NA	NA	NA
AVH44366.1\|1478707_1480150_+	DUF4150 family protein	NA	NA	NA	NA
AVH44367.1\|1480146_1480725_+	hypothetical protein	NA	NA	NA	NA
AVH44368.1\|1480911_1481649_+	hypothetical protein	NA	NA	NA	NA
AVH44369.1\|1482056_1482872_-\|transposase	transposase	S5WIU1	Leptospira_phage	1.1e-44	39.0
AVH44370.1\|1482892_1483159_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2242158 : 2288580

Shigella_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH45054.1\|2242158_2242560_+\|transposase	transposase	Q76S41	Shigella_phage	1.1e-29	59.5
AVH45055.1\|2242556_2243408_+\|transposase	transposase	A0A1B0Z042	Pseudomonas_phage	5.5e-74	52.8
AVH45056.1\|2243407_2243680_+	hypothetical protein	NA	NA	NA	NA
AVH45057.1\|2243999_2247059_-	FAD-linked oxidase	NA	NA	NA	NA
AVH45058.1\|2247090_2248014_-	GntR family transcriptional regulator	NA	NA	NA	NA
AVH45059.1\|2248000_2249287_-	MFS transporter	NA	NA	NA	NA
AVH45060.1\|2249505_2249991_-	AraC family transcriptional regulator	NA	NA	NA	NA
AVH45061.1\|2250574_2251372_-\|transposase	transposase	NA	NA	NA	NA
AVH45062.1\|2251368_2251731_-\|transposase	transposase	NA	NA	NA	NA
AVH45063.1\|2252903_2253593_-	hypothetical protein	NA	NA	NA	NA
AVH45064.1\|2253652_2254228_-	hypothetical protein	NA	NA	NA	NA
AVH45065.1\|2254386_2255307_-	hypothetical protein	NA	NA	NA	NA
AVH45066.1\|2255315_2255585_-	hypothetical protein	NA	NA	NA	NA
AVH45067.1\|2255581_2257135_-	hypothetical protein	A0A2K9L3I8	Tupanvirus	5.2e-22	24.9
AVH45068.1\|2257131_2257989_-	hypothetical protein	NA	NA	NA	NA
AVH45069.1\|2258122_2259298_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
AVH45070.1\|2259338_2259572_-	hypothetical protein	NA	NA	NA	NA
AVH45071.1\|2259654_2260998_-	multidrug transporter MATE	NA	NA	NA	NA
AVH45072.1\|2261053_2262133_-	hypothetical protein	NA	NA	NA	NA
AVH45073.1\|2262527_2262974_+	nodulation protein N	NA	NA	NA	NA
AVH45074.1\|2262998_2264573_+	hypothetical protein	NA	NA	NA	NA
AVH45075.1\|2264569_2265403_+	peptidase	NA	NA	NA	NA
AVH45076.1\|2265819_2266149_-\|transposase	transposase	U5P429	Shigella_phage	3.3e-35	65.4
AVH45077.1\|2266871_2267549_-	permease	NA	NA	NA	NA
AVH45078.1\|2267898_2268153_+	prevent-host-death protein	NA	NA	NA	NA
AVH45079.1\|2268744_2269635_-	LysR family transcriptional regulator	NA	NA	NA	NA
AVH45080.1\|2269747_2270920_+	mandelate racemase/muconate lactonizing protein	NA	NA	NA	NA
AVH45081.1\|2270930_2271956_-	LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor	NA	NA	NA	NA
AVH45082.1\|2272193_2273174_+	MFS transporter	NA	NA	NA	NA
AVH45083.1\|2273247_2273727_+	membrane protein	NA	NA	NA	NA
AVH45084.1\|2273765_2275265_+	tripartite tricarboxylate transporter TctA	NA	NA	NA	NA
AVH45085.1\|2275409_2276069_+	hypothetical protein	NA	NA	NA	NA
AVH45086.1\|2276418_2276682_-	glutathione S-transferase	NA	NA	NA	NA
AVH45087.1\|2277041_2277503_+	membrane protein	NA	NA	NA	NA
AVH45088.1\|2277499_2278867_+	mercuric reductase	A0A2K5B2C5	Erysipelothrix_phage	2.7e-62	34.8
AVH45089.1\|2279352_2280330_+	non-heme chloroperoxidase	A0A220NRX7	Mycobacterium_phage	3.6e-13	30.4
AVH45090.1\|2280428_2280881_+	endoribonuclease L-PSP	NA	NA	NA	NA
AVH45091.1\|2280953_2281685_+	cation transport protein ChaC	NA	NA	NA	NA
AVH45092.1\|2281671_2282571_-	LysR family transcriptional regulator	NA	NA	NA	NA
AVH45093.1\|2282845_2283370_-	hypothetical protein	NA	NA	NA	NA
AVH45094.1\|2283370_2285383_-	ankyrin repeat protein	NA	NA	NA	NA
AVH45095.1\|2285643_2286390_+	hypothetical protein	NA	NA	NA	NA
AVH45096.1\|2286581_2286782_+	ABC transporter ATPase	NA	NA	NA	NA
AVH45097.1\|2286824_2287520_-	hypothetical protein	NA	NA	NA	NA
AVH45098.1\|2287516_2287906_-	hypothetical protein	NA	NA	NA	NA
AVH45099.1\|2288079_2288580_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP026927

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

194640 : 233348

Leptospira_phage(28.57%)

transposase,integrase

attL 197271:197285|attR 236323:236337

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH45478.1\|194640_197616_+\|transposase	transposase	A0A1B0V7H9	Salmonella_phage	6.6e-191	37.6
197271:197285	attL	NA	NA	NA	NA
AVH45479.1\|197635_198358_-	AcvB	NA	NA	NA	NA
AVH45480.1\|198936_201426_-	two-component VirA-like sensor kinase	Q8QKV7	Ectocarpus_siliculosus_virus	8.1e-09	25.1
AVH45481.1\|201984_202692_+\|transposase	transposase	NA	NA	NA	NA
AVH45482.1\|202740_203178_-	VirK	NA	NA	NA	NA
AVH45483.1\|203449_204625_-	P-450 monooxygenase	NA	NA	NA	NA
AVH45484.1\|204861_205044_+	hypothetical protein	NA	NA	NA	NA
AVH45485.1\|205629_205899_+	hypothetical protein	NA	NA	NA	NA
AVH45486.1\|206189_206696_-\|transposase	transposase	A0A218MNE7	uncultured_virus	6.9e-24	35.8
AVH45487.1\|206692_207799_-\|transposase	transposase IS66	S5VTD3	Leptospira_phage	1.4e-37	37.2
AVH45488.1\|207840_208194_-\|transposase	transposase	S5VXZ8	Leptospira_phage	4.8e-16	39.8
AVH45489.1\|208897_210763_-	hypothetical protein	NA	NA	NA	NA
AVH45490.1\|210752_211097_-	hypothetical protein	NA	NA	NA	NA
AVH45491.1\|211654_212077_-	hypothetical protein	NA	NA	NA	NA
AVH45492.1\|212799_213654_+	hypothetical protein	NA	NA	NA	NA
AVH45493.1\|213643_214579_+	hypothetical protein	NA	NA	NA	NA
AVH45494.1\|214578_215433_+	hypothetical protein	NA	NA	NA	NA
AVH45495.1\|215441_217778_+	hypothetical protein	NA	NA	NA	NA
AVH45496.1\|217774_218575_+	hypothetical protein	A0A1S5SBU1	Streptococcus_phage	1.1e-28	34.2
AVH45497.1\|218789_219956_+	hypothetical protein	NA	NA	NA	NA
AVH45498.1\|219952_220459_+	hypothetical protein	NA	NA	NA	NA
AVH45499.1\|220458_222438_+	hypothetical protein	NA	NA	NA	NA
AVH45500.1\|222518_223322_-	hypothetical protein	NA	NA	NA	NA
AVH45501.1\|223852_224968_-	hypothetical protein	NA	NA	NA	NA
AVH45502.1\|225144_225921_-	hypothetical protein	NA	NA	NA	NA
AVH45503.1\|226010_226805_-	hypothetical protein	NA	NA	NA	NA
AVH45504.1\|226995_228138_-	hypothetical protein	NA	NA	NA	NA
AVH45505.1\|228262_230365_-	hypothetical protein	NA	NA	NA	NA
AVH45506.1\|230454_231135_-	transcriptional regulator	A0A1B1IVT7	uncultured_Mediterranean_phage	5.3e-19	30.4
AVH45507.1\|231137_232091_-	hypothetical protein	NA	NA	NA	NA
AVH45508.1\|232214_233348_+\|integrase	integrase	NA	NA	NA	NA
236323:236337	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. CP026926

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6051 : 60716

Stx2-converting_phage(25.0%)

integrase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH45138.1\|6051_7134_-\|integrase	integrase	NA	NA	NA	NA
AVH45139.1\|7135_7537_-	plasmid stabilization protein	NA	NA	NA	NA
AVH45140.1\|7536_7791_-	prevent-host-death protein	NA	NA	NA	NA
AVH45141.1\|8093_11069_-\|transposase	transposase	A0A1B0V7H9	Salmonella_phage	6.6e-191	37.6
AVH45142.1\|13044_13764_+	type IV secretion system lytic transglycosylase VirB1	NA	NA	NA	NA
AVH45143.1\|13778_14144_+	type IV secretion system protein VirB2	NA	NA	NA	NA
AVH45144.1\|14143_14470_+	type IV secretion system protein VirB3	NA	NA	NA	NA
AVH45145.1\|14469_16839_+	type IV secretion system protein VirB4	NA	NA	NA	NA
AVH45146.1\|16853_17516_+	type IV secretion system protein VirB5	NA	NA	NA	NA
AVH45147.1\|17612_18500_+	type IV secretion system protein VirB6	NA	NA	NA	NA
AVH45148.1\|18533_18701_+	type IV secretion system protein VirB7	NA	NA	NA	NA
AVH45149.1\|18687_19401_+	type IV secretion system protein VirB8	NA	NA	NA	NA
AVH45150.1\|19397_20279_+	type IV secretion system protein VirB9	NA	NA	NA	NA
AVH45151.1\|20275_21409_+	type IV secretion system protein VirB10	NA	NA	NA	NA
AVH45152.1\|21448_22480_+	type IV secretion system protein VirB11	NA	NA	NA	NA
AVH45153.1\|22689_23415_+	two-component response regulator VirG	NA	NA	NA	NA
AVH45154.1\|23473_23857_+	hypothetical protein	NA	NA	NA	NA
AVH45155.1\|23912_24236_-\|transposase	transposase	NA	NA	NA	NA
AVH45156.1\|24239_25895_-\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	1.6e-101	46.8
AVH45157.1\|25940_26288_-\|transposase	transposase	A0A0P0ZDM8	Stx2-converting_phage	1.8e-36	61.7
AVH45158.1\|26284_26692_-\|transposase	transposase	NA	NA	NA	NA
AVH45159.1\|27008_28127_-\|transposase	transposase	NA	NA	NA	NA
AVH45160.1\|28275_29256_-\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	2.9e-66	43.3
AVH45161.1\|29601_30831_+\|integrase	integrase	A0A142K830	Mycobacterium_phage	1.3e-12	29.5
AVH45162.1\|30824_31739_+\|integrase	integrase	NA	NA	NA	NA
AVH45163.1\|31735_32725_+\|integrase	integrase	A0A2L1IV36	Escherichia_phage	2.7e-08	29.1
AVH45164.1\|32732_32924_-	hypothetical protein	NA	NA	NA	NA
AVH45165.1\|32874_33267_-\|transposase	transposase	NA	NA	NA	NA
AVH45166.1\|33392_34001_-	crown gall tumor protein VirC2	NA	NA	NA	NA
AVH45167.1\|34003_34699_-	crown gall tumor protein VirC1	A0A0A8IL09	Aurantimonas_phage	7.8e-10	28.4
AVH45168.1\|34967_35411_+	type IV secretion system T-DNA border endonuclease VirD1	NA	NA	NA	NA
AVH45169.1\|35444_36719_+	type IV secretion system T-DNA border endonuclease VirD2	NA	NA	NA	NA
AVH45170.1\|36738_37344_+	virA/G regulated protein	NA	NA	NA	NA
AVH45171.1\|37372_39343_+	type IV secretion system protein VirD4	NA	NA	NA	NA
AVH45172.1\|39434_41936_+	virA/G regulated protein	NA	NA	NA	NA
AVH45173.1\|42388_42586_+	type IV secretion system chaperone VirE1	NA	NA	NA	NA
AVH45174.1\|42590_44192_+	type IV secretion system single-stranded DNA binding protein VirE2	NA	NA	NA	NA
AVH45175.1\|44257_46276_+	virA/G regulated protein	NA	NA	NA	NA
AVH45176.1\|46523_46718_+	hypothetical protein	NA	NA	NA	NA
AVH45177.1\|46887_47196_+	integration host factor beta subunit	E1XTB6	Salmonella_phage	3.2e-08	37.2
AVH45178.1\|47246_47612_+	hypothetical protein	NA	NA	NA	NA
AVH45179.1\|47625_47928_+	cold shock protein	A0A218MMZ6	uncultured_virus	8.3e-09	44.6
AVH45180.1\|48250_48751_+	amino acid transporter	NA	NA	NA	NA
AVH45181.1\|50438_50969_+	conjugal transfer protein TraF	NA	NA	NA	NA
AVH45182.1\|51006_51261_+	conjugal transfer protein TraB	NA	NA	NA	NA
AVH45183.1\|51487_52096_+	VirF	NA	NA	NA	NA
AVH45184.1\|52788_53031_+	hypothetical protein	NA	NA	NA	NA
AVH45185.1\|53678_54311_+	phosphoglycolate phosphatase	NA	NA	NA	NA
AVH45186.1\|54390_54603_+	hypothetical protein	NA	NA	NA	NA
AVH45187.1\|54976_55504_+	VirH	NA	NA	NA	NA
AVH45188.1\|55587_56526_-\|transposase	transposase	A0A1S7J231	Thermus_phage	2.2e-07	26.2
AVH45189.1\|57164_57878_-\|transposase	IS21 family transposase	A0A059NT77	Lactococcus_phage	1.6e-26	33.8
AVH45190.1\|57867_58752_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	4.6e-07	30.5
AVH45191.1\|59017_59695_+\|transposase	transposase	NA	NA	NA	NA
AVH45192.1\|59895_60021_-	hypothetical protein	NA	NA	NA	NA
AVH45193.1\|60020_60716_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. CP026928

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

21716 : 90336

Salmonella_phage(30.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH45536.1\|21716_24692_+\|transposase	transposase	A0A1B0V7H9	Salmonella_phage	2.1e-189	38.0
AVH45537.1\|24701_25691_-	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA
AVH45538.1\|26311_27187_-	hypothetical protein	NA	NA	NA	NA
AVH45539.1\|27482_28943_+	hypothetical protein	NA	NA	NA	NA
AVH45540.1\|29149_30214_+	hypothetical protein	NA	NA	NA	NA
AVH45541.1\|30447_31263_+	hypothetical protein	NA	NA	NA	NA
AVH45542.1\|31424_32252_+	hypothetical protein	NA	NA	NA	NA
AVH45543.1\|32248_33133_+	hypothetical protein	NA	NA	NA	NA
AVH45544.1\|33338_34550_-	hypothetical protein	NA	NA	NA	NA
AVH45545.1\|34740_36042_+	hypothetical protein	NA	NA	NA	NA
AVH45546.1\|36189_36855_+	hypothetical protein	NA	NA	NA	NA
AVH45547.1\|36960_37074_+	DNA polymerase	NA	NA	NA	NA
AVH45548.1\|37275_37449_+	hypothetical protein	NA	NA	NA	NA
AVH45549.1\|37543_38620_+	hypothetical protein	NA	NA	NA	NA
AVH45550.1\|38607_39477_+	hypothetical protein	NA	NA	NA	NA
AVH45551.1\|39669_40641_+	hypothetical protein	NA	NA	NA	NA
AVH45552.1\|40618_40867_+	hypothetical protein	NA	NA	NA	NA
AVH45553.1\|40869_42678_+	hypothetical protein	NA	NA	NA	NA
AVH45554.1\|42720_43728_-	hypothetical protein	A0A1S6KZX9	Salmonella_phage	4.3e-09	28.5
AVH45555.1\|43756_45070_-	hypothetical protein	NA	NA	NA	NA
AVH45556.1\|45141_46554_-	UvrD/REP helicase domain protein	NA	NA	NA	NA
AVH45557.1\|46546_48277_-	chromosome segregation protein SMC	NA	NA	NA	NA
AVH45558.1\|48974_49157_+	helicase	NA	NA	NA	NA
AVH45559.1\|49368_50331_+	hypothetical protein	NA	NA	NA	NA
AVH45560.1\|50473_51076_+	hypothetical protein	NA	NA	NA	NA
AVH45561.1\|51091_51493_+	hypothetical protein	NA	NA	NA	NA
AVH45562.1\|51592_56698_+	lactate dehydrogenase	I6WLR1	Burkholderia_virus	0.0e+00	43.2
AVH45563.1\|56849_57722_-	hypothetical protein	NA	NA	NA	NA
AVH45564.1\|57718_59482_-	hypothetical protein	NA	NA	NA	NA
AVH45565.1\|59892_61737_+	plasmid partitioning protein	NA	NA	NA	NA
AVH45566.1\|61835_62306_+	hypothetical protein	NA	NA	NA	NA
AVH45567.1\|62302_63193_+	hypothetical protein	A0A1X9SH15	Bradyrhizobium_phage	5.6e-21	35.9
AVH45568.1\|63189_63570_+	hypothetical protein	NA	NA	NA	NA
AVH45569.1\|63960_64560_+	hypothetical protein	NA	NA	NA	NA
AVH45570.1\|65158_65626_-	hypothetical protein	NA	NA	NA	NA
AVH45571.1\|66167_66320_+	ATPase AAA	NA	NA	NA	NA
AVH45572.1\|66599_67232_-	GntR family transcriptional regulator	NA	NA	NA	NA
AVH45573.1\|67329_68406_-	phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein	G3M9Y6	Bacillus_virus	8.1e-30	33.3
AVH45574.1\|68407_69838_-	aldehyde dehydrogenase	NA	NA	NA	NA
AVH45575.1\|69834_70323_-	hypothetical protein	NA	NA	NA	NA
AVH45576.1\|70433_71474_+	hypothetical protein	NA	NA	NA	NA
AVH45577.1\|71537_72338_+	hypothetical protein	NA	NA	NA	NA
AVH45578.1\|72334_73165_+	hypothetical protein	NA	NA	NA	NA
AVH45579.1\|73190_74027_+	hypothetical protein	NA	NA	NA	NA
AVH45580.1\|74023_74977_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
AVH45581.1\|75817_76291_-	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
AVH45582.1\|76290_78084_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.5e-15	34.6
AVH45583.1\|78117_78231_+	hypothetical protein	NA	NA	NA	NA
AVH45584.1\|78383_79115_-	DNA-binding protein	NA	NA	NA	NA
AVH45585.1\|79708_80005_+	hypothetical protein	I1ZBF8	Salisaeta_icosahedral_phage	1.9e-10	68.6
AVH45586.1\|80546_80843_+	hypothetical protein	NA	NA	NA	NA
AVH45587.1\|80928_81456_-	DNA damage-inducible protein DinB	NA	NA	NA	NA
AVH45588.1\|81522_82158_+	TetR family transcriptional regulator	NA	NA	NA	NA
AVH45589.1\|82300_82447_+	hypothetical protein	NA	NA	NA	NA
AVH45590.1\|82489_82765_-	hypothetical protein	NA	NA	NA	NA
AVH45591.1\|82773_84429_-\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	3.5e-101	46.7
AVH45592.1\|84474_84822_-\|transposase	transposase	A0A0P0ZDM8	Stx2-converting_phage	9.2e-36	60.7
AVH45593.1\|84818_85217_-\|transposase	transposase	NA	NA	NA	NA
AVH45594.1\|85533_86652_-\|transposase	transposase	NA	NA	NA	NA
AVH45595.1\|87360_90336_-\|transposase	transposase	A0A1B0V7H9	Salmonella_phage	6.6e-191	37.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026924

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP026925

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP026927

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. CP026926

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

5. CP026928

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection