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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP026211 Citrobacter sp. CFNIH10 plasmid pCIT-eb1a, complete sequence 0 crisprs RT,csa3 0 0 1 0
CP026216 Citrobacter sp. CFNIH10 chromosome, complete genome 1 crisprs WYL,DEDDh,cas3,RT,csa3,DinG 0 1 14 0
CP026214 Citrobacter sp. CFNIH10 plasmid pCIT-dfda, complete sequence 0 crisprs NA 0 0 0 0
CP026215 Citrobacter sp. CFNIH10 plasmid pCIT-ce4a, complete sequence 0 crisprs NA 0 0 0 0
CP026213 Citrobacter sp. CFNIH10 plasmid pKPC-933d, complete sequence 0 crisprs csa3,RT 0 0 2 0
CP026210 Citrobacter sp. CFNIH10 plasmid pKPC-2fe2, complete sequence 0 crisprs DEDDh 0 0 1 0
CP026212 Citrobacter sp. CFNIH10 plasmid pCIT-a850, complete sequence 0 crisprs csa3,RT 0 0 4 0

Results visualization

1. CP026210
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 28088 : 48205 20 Escherichia_phage(37.5%) transposase,protease,integrase attL 34084:34143|attR 35393:35534
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP026216
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026216_2 3657741-3657864 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP026216_2 2.1|3657784|38|CP026216|CRISPRCasFinder 3657784-3657821 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947

1. spacer 2.1|3657784|38|CP026216|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaaaatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.******.*****************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 389333 : 457332 60 Vibrio_phage(40.0%) plate,tRNA,protease,integrase attL 409776:409794|attR 438101:438119
DBSCAN-SWA_2 703248 : 710927 10 Pseudoalteromonas_phage(16.67%) NA NA
DBSCAN-SWA_3 984740 : 994433 8 Stx2-converting_phage(50.0%) transposase NA
DBSCAN-SWA_4 1729020 : 1748230 20 Bacteriophage(25.0%) tRNA,transposase,integrase,holin attL 1724153:1724167|attR 1752539:1752553
DBSCAN-SWA_5 2398376 : 2407967 8 uncultured_Mediterranean_phage(33.33%) transposase NA
DBSCAN-SWA_6 2978236 : 3027935 60 Cronobacter_phage(67.5%) transposase,integrase,holin,capsid,tail,terminase,portal,head attL 2975601:2975615|attR 3018331:3018345
DBSCAN-SWA_7 3042570 : 3154649 117 Cronobacter_phage(50.0%) transposase,integrase,holin,capsid,tail,terminase,portal,protease,head attL 3055130:3055150|attR 3124680:3124700
DBSCAN-SWA_8 3188456 : 3301290 119 Enterobacteria_phage(31.15%) transposase,tRNA,holin,integrase,capsid,tail,terminase,portal,protease,head attL 3294671:3294730|attR 3308973:3309039
DBSCAN-SWA_9 3329518 : 3362369 45 Vibrio_phage(67.65%) plate,transposase,tail,head NA
DBSCAN-SWA_10 4109024 : 4173237 80 Shigella_phage(46.51%) transposase,tail,plate,protease,head NA
DBSCAN-SWA_11 4202246 : 4289836 104 Enterobacteria_phage(32.2%) transposase,tRNA,holin,capsid,tail,terminase,portal,protease,head NA
DBSCAN-SWA_12 4357662 : 4406096 70 Enterobacteria_phage(25.93%) integrase,tail,terminase,lysis,coat attL 4357407:4357428|attR 4406121:4406142
DBSCAN-SWA_13 4610584 : 4619007 9 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_14 4821378 : 4904914 101 Shigella_phage(32.73%) tRNA,holin,integrase,capsid,tail,terminase,portal,plate,protease,head attL 4865123:4865143|attR 4905110:4905130
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP026211
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 25988 : 31156 8 Escherichia_phage(66.67%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. CP026212
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 98534 113 Escherichia_phage(13.04%) integrase,protease,transposase attL 18424:18439|attR 81264:81279
DBSCAN-SWA_2 102820 : 107129 5 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_3 110646 : 112170 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_4 118498 : 123096 7 Wolbachia_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
5. CP026213
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 142860 : 160637 23 Escherichia_phage(40.0%) integrase,transposase attL 143462:143521|attR 156894:157714
DBSCAN-SWA_2 171901 : 202879 35 Salmonella_phage(27.27%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage