CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025745	Salmonella enterica strain MFDS1004024 chromosome, complete genome	3 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	0	22	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP025745_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025745_2

984885-986072

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

19 spacers

cas3,cas8e,cse2gr11

The CRISPR arrays of CP025745_2

>merge|CP025745|2|984885-986072|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAATACTATCCTGCAATGCGCTACCACGTTACTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGATAACGCATGGGAGTCCAGATTACAAATTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTGGATACACGCGTTTCAATGGTCAGAGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGCTCTCTAACGACTTCCCCGGAGTACGTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTGTCGGCGTTGCTCACGTGACTATTTCGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGACCGTTATCTGCTGGTTGATACTTCCCCGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGCAGAACGCCGCATCGCCGAACTGGACAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCCGGTTTATCTGCTCCAGACCGATCGACTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCGCGGTGATAGTATGCGGGGAACTATAGACGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAAACGAAGATGACCTTTATTAGAGATATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTGAATCTTTGCGAGTGGGATGATGGCACTGTGTTTCCCGCGCCAGCGGGGATAAACCGCCGCTACGATCTATTCGAATCATAGTGGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTGCGCCGGGATATTGCGCCGCGCCGAGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCTTTTATTCTAATGGGTTAGATAGGGTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAACTGCACCGCCGCTGCCACTGAGTTTGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAACTGCACCGCCGCTGCCACTGAGTTTGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGCAGAATTTACAGGTGTCACTGTTGTCCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGTGGTGTATATCGGTCTTGATGCGTTGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCACGAGGTCTGACGCGGATGTGATGAGTTAGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP025745|2|1|984885-986011|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATACTATCCTGCAATGCGCTACCACGTTACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGATAACGCATGGGAGTCCAGATTACAAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGATACACGCGTTTCAATGGTCAGAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTCTCTAACGACTTCCCCGGAGTACGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGTCGGCGTTGCTCACGTGACTATTTCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTATCTGCTGGTTGATACTTCCCCGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCAGAACGCCGCATCGCCGAACTGGACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCGGTTTATCTGCTCCAGACCGATCGACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGCGGTGATAGTATGCGGGGAACTATAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAACGAAGATGACCTTTATTAGAGATATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGAATCTTTGCGAGTGGGATGATGGCACT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CCGCTACGATCTATTCGAATCATAGTGGTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTTTTATTCTAATGGGTTAGATAGGGTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAGAATTTACAGGTGTCACTGTTGTCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGTGGTGTATATCGGTCTTGATGCGTTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP025745|2|2|984885-986072|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATACTATCCTGCAATGCGCTACCACGTTACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGATAACGCATGGGAGTCCAGATTACAAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGATACACGCGTTTCAATGGTCAGAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTCTCTAACGACTTCCCCGGAGTACGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGTCGGCGTTGCTCACGTGACTATTTCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTATCTGCTGGTTGATACTTCCCCGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCAGAACGCCGCATCGCCGAACTGGACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCGGTTTATCTGCTCCAGACCGATCGACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGCGGTGATAGTATGCGGGGAACTATAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAACGAAGATGACCTTTATTAGAGATATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGAATCTTTGCGAGTGGGATGATGGCACT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CCGCTACGATCTATTCGAATCATAGTGGTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTTTTATTCTAATGGGTTAGATAGGGTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAGAATTTACAGGTGTCACTGTTGTCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGTGGTGTATATCGGTCTTGATGCGTTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCACGAGGTCTGACGCGGATGTGATGAGTTA
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP025745|2|1|984885-986072|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATACTATCCTGCAATGCGCTACCACGTTACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGATAACGCATGGGAGTCCAGATTACAAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGATACACGCGTTTCAATGGTCAGAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTCTCTAACGACTTCCCCGGAGTACGTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGTCGGCGTTGCTCACGTGACTATTTCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTATCTGCTGGTTGATACTTCCCCGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCAGAACGCCGCATCGCCGAACTGGACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCGGTTTATCTGCTCCAGACCGATCGACTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGCGGTGATAGTATGCGGGGAACTATAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAACGAAGATGACCTTTATTAGAGATATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGAATCTTTGCGAGTGGGATGATGGCACT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CCGCTACGATCTATTCGAATCATAGTGGTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTTTTATTCTAATGGGTTAGATAGGGTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACTGCACCGCCGCTGCCACTGAGTTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAGAATTTACAGGTGTCACTGTTGTCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGTGGTGTATATCGGTCTTGATGCGTTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCACGAGGTCTGACGCGGATGTGATGAGTTA
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP025745.1\|AUO50864.1\|987852_989652_+\|Assimilatory-sulfite-reductase-(NADPH)	unknown	unknown	gnl\|CDD\|182862
CP025745.1\|AUO50868.1\|993685_996349_+\|CRISPR-associated-nuclease/helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP025745.1\|AUO50870.1\|997913_998474_+\|hypothetical-protein	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP025745.1\|AUO50867.1\|992287_993241_-\|Secreted-effector-protein-sopD2	unknown	unknown	gnl\|CDD\|185277
CP025745.1\|AUO50855.1\|975762_978408_-\|Putative-outer-membrane-usher-protein-YfcU	unknown	unknown	gnl\|CDD\|185176
CP025745.1\|AUO50863.1\|987055_987418_-\|6-pyruvoyltetrahydropterin-synthase	unknown	unknown	gnl\|CDD\|238264
CP025745.1\|AUO50852.1\|973965_974451_-\|putative-fimbrial-like-protein-YfcQ	unknown	unknown	gnl\|CDD\|185179
CP025745.1\|AUO50856.1\|978541_979129_-\|Fimbria-A-protein	unknown	unknown	gnl\|CDD\|185169
CP025745.1\|AUO50859.1\|982482_983781_+\|Phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
CP025745.1\|AUO50857.1\|979734_980535_+\|ATP-diphosphatase	unknown	unknown	gnl\|CDD\|236569
CP025745.1\|AUO50851.1\|973432_973924_-\|putative-fimbrial-like-protein-YfcP	unknown	unknown	gnl\|CDD\|185168
CP025745.1\|AUO50860.1\|983916_984588_+\|7-carboxy-7-deazaguanine-synthase	unknown	unknown	gnl\|CDD\|275126
CP025745.1\|AUO50853.1\|974450_974951_-\|putative-fimbrial-like-protein-YfcR	unknown	unknown	gnl\|CDD\|185178
CP025745.1\|AUO50854.1\|974976_975750_-\|putative-fimbrial-chaperone-YqiH	unknown	unknown	gnl\|CDD\|185177
CP025745.1\|AUO50862.1\|986539_986968_+\|7,-8-dihydropterin-6-yl-methyl-4-(beta-D--ribofuranosyl)aminobenzene5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|224158
CP025745.1\|AUO50858.1\|980762_982400_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
CP025745.1\|AUO50865.1\|989651_991364_+\|Assimilatory-sulfite-reductase-(NADPH)	unknown	unknown	gnl\|CDD\|237402
CP025745.1\|AUO50866.1\|991465_992200_+\|Phosphoadenylyl-sulfate-reductase-(thioredoxin)	unknown	unknown	gnl\|CDD\|234997
CP025745.1\|AUO50869.1\|996360_997917_+\|hypothetical-protein	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP025745.1\|AUO50861.1\|986169_986517_+\|7,-8-dihydropterin-6-yl-methyl-4-(beta-D--ribofuranosyl)aminobenzene5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|224158

Protein	Function_ID	Function_description	E-value
CP025745.1\|AUO50864.1\|987852_989652_+\|Assimilatory-sulfite-reductase-(NADPH)	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP025745.1\|AUO50868.1\|993685_996349_+\|CRISPR-associated-nuclease/helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP025745.1\|AUO50870.1\|997913_998474_+\|hypothetical-protein	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
CP025745.1\|AUO50867.1\|992287_993241_-\|Secreted-effector-protein-sopD2	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP025745.1\|AUO50855.1\|975762_978408_-\|Putative-outer-membrane-usher-protein-YfcU	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
CP025745.1\|AUO50863.1\|987055_987418_-\|6-pyruvoyltetrahydropterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP025745.1\|AUO50852.1\|973965_974451_-\|putative-fimbrial-like-protein-YfcQ	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.92081e-101
CP025745.1\|AUO50856.1\|978541_979129_-\|Fimbria-A-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.39196e-99
CP025745.1\|AUO50859.1\|982482_983781_+\|Phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP025745.1\|AUO50857.1\|979734_980535_+\|ATP-diphosphatase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
CP025745.1\|AUO50851.1\|973432_973924_-\|putative-fimbrial-like-protein-YfcP	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	2.03151e-109
CP025745.1\|AUO50860.1\|983916_984588_+\|7-carboxy-7-deazaguanine-synthase	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP025745.1\|AUO50853.1\|974450_974951_-\|putative-fimbrial-like-protein-YfcR	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	1.02751e-105
CP025745.1\|AUO50854.1\|974976_975750_-\|putative-fimbrial-chaperone-YqiH	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
CP025745.1\|AUO50862.1\|986539_986968_+\|7,-8-dihydropterin-6-yl-methyl-4-(beta-D--ribofuranosyl)aminobenzene5'-phosphate-synthase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	3.75838e-53
CP025745.1\|AUO50858.1\|980762_982400_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP025745.1\|AUO50865.1\|989651_991364_+\|Assimilatory-sulfite-reductase-(NADPH)	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP025745.1\|AUO50866.1\|991465_992200_+\|Phosphoadenylyl-sulfate-reductase-(thioredoxin)	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
CP025745.1\|AUO50869.1\|996360_997917_+\|hypothetical-protein	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP025745.1\|AUO50861.1\|986169_986517_+\|7,-8-dihydropterin-6-yl-methyl-4-(beta-D--ribofuranosyl)aminobenzene5'-phosphate-synthase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.5931e-40

>CP025745.1|AUO50860.1|983916_984588_+|7-carboxy-7-deazaguanine-synthase
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP025745.1|AUO50859.1|982482_983781_+|Phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP025745.1|AUO50858.1|980762_982400_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP025745.1|AUO50857.1|979734_980535_+|ATP-diphosphatase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP025745.1|AUO50856.1|978541_979129_-|Fimbria-A-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAISDAGKNNIKLGDTYTQAFADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>CP025745.1|AUO50855.1|975762_978408_-|Putative-outer-membrane-usher-protein-YfcU
MLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVISDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKILEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>CP025745.1|AUO50854.1|974976_975750_-|putative-fimbrial-chaperone-YqiH
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTAPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>CP025745.1|AUO50853.1|974450_974951_-|putative-fimbrial-like-protein-YfcR
MLTRWKILVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTIGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>CP025745.1|AUO50852.1|973965_974451_-|putative-fimbrial-like-protein-YfcQ
MERFIVKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>CP025745.1|AUO50851.1|973432_973924_-|putative-fimbrial-like-protein-YfcP
MLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFKGSATVSFEYQ
>CP025745.1|AUO50861.1|986169_986517_+|7,-8-dihydropterin-6-yl-methyl-4-(beta-D--ribofuranosyl)aminobenzene5'-phosphate-synthase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKNKKIVV
>CP025745.1|AUO50862.1|986539_986968_+|7,-8-dihydropterin-6-yl-methyl-4-(beta-D--ribofuranosyl)aminobenzene5'-phosphate-synthase
MMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIVNIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP025745.1|AUO50863.1|987055_987418_-|6-pyruvoyltetrahydropterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP025745.1|AUO50864.1|987852_989652_+|Assimilatory-sulfite-reductase-(NADPH)
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQATASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQNITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP025745.1|AUO50865.1|989651_991364_+|Assimilatory-sulfite-reductase-(NADPH)
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAELGLVGKAPGRYNVHLGGNRMGTRIPRMYRENITESEILDSVDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP025745.1|AUO50866.1|991465_992200_+|Phosphoadenylyl-sulfate-reductase-(thioredoxin)
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP025745.1|AUO50867.1|992287_993241_-|Secreted-effector-protein-sopD2
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWNKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP025745.1|AUO50868.1|993685_996349_+|CRISPR-associated-nuclease/helicase-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP025745.1|AUO50869.1|996360_997917_+|hypothetical-protein
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>CP025745.1|AUO50870.1|997913_998474_+|hypothetical-protein
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD

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Crispr_ID: CP025745_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025745_3

1002242-1003920

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

27 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP025745_3

>merge|CP025745|3|1002242-1003920|CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAGTTTATTACCCCGCCATTTTTCAGTCGTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTACGACGTAAACTGCGCGCCCGGACTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGGCTATCGGGACACAGGCAAACGTCGTGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTGGTTGATGCGTCAAACCTCGCTAACTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGAATAATAAATGGAGTGCCATTTGTAGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGCGATGTTGGCATGGCATTGGTTTACTGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTAGAGCCGTGTGTTAGCAGATAATCAGTATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAGCCGGACCACATTTTTCTTGCCGAACTCACGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTGTTGCCGACGTCGGGCTTAAACACCACTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGACGCTTCACCTGCATCAAATTCTCCTCCAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGGCAACAATTTTAGAGGGGCTGCATTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGACTACATAGATAACCAAAAATCCACTGGCAAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCACGCGGGTTGCGTAACGGATATACGACAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGCAGAACAGCTCTGCTTCCTTTGCGGAGACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGCGCTGTTCTATTGGCGGCAATTCTCTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGACAGCACAGTTGATTACAGCAAAATTTACGGTGTTCCCCGCGTCAGCGGGGATAAACCGACACGCCAGCCAACAATATTAATTTTGTCGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTTGGCGGCAGCCACCTGAGCAACTGTCGGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGCTTCTTAACGAGGAGATTAACAGCGACGTGTGTTCCCCGCGCCAGCGGGGATAAACCGACTGTAGTTGCGGGTCAGGTTCCGGAATATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGATAGGGATCGGTAACTTTGCCATCGATCGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACGAATTGAGACTATTAGAGATTATTCGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAACCCATTAATTAACTAAGCAGTAATAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCACCCAGCGGGTAAACTGATCAGCAGCAGCACGTGTTCCCCGCGCCAGCGGGGATAAACCGAACCCTCAGAAAATAATCCAGACGTTACCGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGAAACAGAAACCGGATATGAGCCATCCATGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAAATGTTCCCCGCGCCAACGGGGATAAACAC

>CP025745|3|3|1002242-1003920|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTATTACCCCGCCATTTTTCAGTCGTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTACGACGTAAACTGCGCGCCCGGACTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCTATCGGGACACAGGCAAACGTCGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGTTGATGCGTCAAACCTCGCTAACTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGAATAATAAATGGAGTGCCATTTGTAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGATGTTGGCATGGCATTGGTTTACTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAGAGCCGTGTGTTAGCAGATAATCAGTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGCCGGACCACATTTTTCTTGCCGAACTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTTGCCGACGTCGGGCTTAAACACCACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCTTCACCTGCATCAAATTCTCCTCCAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGGCAACAATTTTAGAGGGGCTGCATTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTACATAGATAACCAAAAATCCACTGGCAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACGCGGGTTGCGTAACGGATATACGACAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGACAGCACAGTTGATTACAGCAAAATTTACG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ACACGCCAGCCAACAATATTAATTTTGTCGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTTCTTAACGAGGAGATTAACAGCGACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATAGGGATCGGTAACTTTGCCATCGATCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACCCAGCGGGTAAACTGATCAGCAGCAGCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCCTCAGAAAATAATCCAGACGTTACCGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGAAACAGAAACCGGATATGAGCCATCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA
ATGTTCCCCGCGCCAACGGGGATAAACAC

>CP025745|3|2|1002242-1003920|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTATTACCCCGCCATTTTTCAGTCGTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTACGACGTAAACTGCGCGCCCGGACTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCTATCGGGACACAGGCAAACGTCGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGGTTGATGCGTCAAACCTCGCTAACTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGAATAATAAATGGAGTGCCATTTGTAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGATGTTGGCATGGCATTGGTTTACTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAGAGCCGTGTGTTAGCAGATAATCAGTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGCCGGACCACATTTTTCTTGCCGAACTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTTGCCGACGTCGGGCTTAAACACCACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCTTCACCTGCATCAAATTCTCCTCCAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGGCAACAATTTTAGAGGGGCTGCATTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTACATAGATAACCAAAAATCCACTGGCAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACGCGGGTTGCGTAACGGATATACGACAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGACAGCACAGTTGATTACAGCAAAATTTACG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ACACGCCAGCCAACAATATTAATTTTGTCGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCTTCTTAACGAGGAGATTAACAGCGACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATAGGGATCGGTAACTTTGCCATCGATCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACCCAGCGGGTAAACTGATCAGCAGCAGCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCCTCAGAAAATAATCCAGACGTTACCGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGAAACAGAAACCGGATATGAGCCATCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA
ATGTTCCCCGCGCCAACGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP025745.1\|AUO50882.1\|1009075_1009786_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP025745.1\|AUO50872.1\|999556_1000303_+\|CRISPR-system-Cascade-subunit-CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP025745.1\|AUO50876.1\|1003934_1004981_-\|Alkaline-phosphatase-isozyme-conversion-protein	unknown	unknown	gnl\|CDD\|182299
CP025745.1\|AUO50884.1\|1010261_1011311_+\|tRNA-pseudouridine(13)-synthase	unknown	unknown	gnl\|CDD\|234884
CP025745.1\|AUO50871.1\|998487_999546_+\|CRISPR-system-Cascade-subunit-CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP025745.1\|AUO50868.1\|993685_996349_+\|CRISPR-associated-nuclease/helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP025745.1\|AUO50870.1\|997913_998474_+\|hypothetical-protein	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP025745.1\|AUO50875.1\|1001851_1002145_+\|CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP025745.1\|AUO50879.1\|1007575_1008181_+\|Adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP025745.1\|AUO50869.1\|996360_997917_+\|hypothetical-protein	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP025745.1\|AUO50867.1\|992287_993241_-\|Secreted-effector-protein-sopD2	unknown	unknown	gnl\|CDD\|185277
CP025745.1\|AUO50866.1\|991465_992200_+\|Phosphoadenylyl-sulfate-reductase-(thioredoxin)	unknown	unknown	gnl\|CDD\|234997
CP025745.1\|AUO50881.1\|1008745_1009057_+\|Cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP025745.1\|AUO50885.1\|1011291_1012053_+\|5'-nucleotidase	unknown	unknown	gnl\|CDD\|234732
CP025745.1\|AUO50878.1\|1006149_1007589_+\|Sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP025745.1\|AUO50880.1\|1008231_1008555_+\|Inner-membrane-protein-YgbE	unknown	unknown	gnl\|CDD\|371891
CP025745.1\|AUO50877.1\|1005231_1006140_+\|Sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235375
CP025745.1\|AUO50883.1\|1009785_1010265_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP025745.1\|AUO50873.1\|1000284_1000935_+\|hypothetical-protein	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP025745.1\|AUO50874.1\|1000931_1001852_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693

Protein	Function_ID	Function_description	E-value
CP025745.1\|AUO50882.1\|1009075_1009786_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
CP025745.1\|AUO50872.1\|999556_1000303_+\|CRISPR-system-Cascade-subunit-CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.2413e-48
CP025745.1\|AUO50876.1\|1003934_1004981_-\|Alkaline-phosphatase-isozyme-conversion-protein	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP025745.1\|AUO50884.1\|1010261_1011311_+\|tRNA-pseudouridine(13)-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP025745.1\|AUO50871.1\|998487_999546_+\|CRISPR-system-Cascade-subunit-CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.35073e-131
CP025745.1\|AUO50868.1\|993685_996349_+\|CRISPR-associated-nuclease/helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP025745.1\|AUO50870.1\|997913_998474_+\|hypothetical-protein	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
CP025745.1\|AUO50875.1\|1001851_1002145_+\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP025745.1\|AUO50879.1\|1007575_1008181_+\|Adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP025745.1\|AUO50869.1\|996360_997917_+\|hypothetical-protein	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP025745.1\|AUO50867.1\|992287_993241_-\|Secreted-effector-protein-sopD2	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP025745.1\|AUO50866.1\|991465_992200_+\|Phosphoadenylyl-sulfate-reductase-(thioredoxin)	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
CP025745.1\|AUO50881.1\|1008745_1009057_+\|Cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP025745.1\|AUO50885.1\|1011291_1012053_+\|5'-nucleotidase	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
CP025745.1\|AUO50878.1\|1006149_1007589_+\|Sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP025745.1\|AUO50880.1\|1008231_1008555_+\|Inner-membrane-protein-YgbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	6.60724e-48
CP025745.1\|AUO50877.1\|1005231_1006140_+\|Sulfate-adenylyltransferase	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP025745.1\|AUO50883.1\|1009785_1010265_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
CP025745.1\|AUO50873.1\|1000284_1000935_+\|hypothetical-protein	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
CP025745.1\|AUO50874.1\|1000931_1001852_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.05302e-156

>CP025745.1|AUO50875.1|1001851_1002145_+|CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP025745.1|AUO50874.1|1000931_1001852_+|CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLINKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEMGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPESESLGDSGHRGHG
>CP025745.1|AUO50873.1|1000284_1000935_+|hypothetical-protein
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>CP025745.1|AUO50872.1|999556_1000303_+|CRISPR-system-Cascade-subunit-CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHDLPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYSLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLDGRAPDVLREAYRWYQDQFNTLKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP025745.1|AUO50871.1|998487_999546_+|CRISPR-system-Cascade-subunit-CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>CP025745.1|AUO50870.1|997913_998474_+|hypothetical-protein
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>CP025745.1|AUO50869.1|996360_997917_+|hypothetical-protein
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>CP025745.1|AUO50868.1|993685_996349_+|CRISPR-associated-nuclease/helicase-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP025745.1|AUO50867.1|992287_993241_-|Secreted-effector-protein-sopD2
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWNKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP025745.1|AUO50866.1|991465_992200_+|Phosphoadenylyl-sulfate-reductase-(thioredoxin)
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP025745.1|AUO50876.1|1003934_1004981_-|Alkaline-phosphatase-isozyme-conversion-protein
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP025745.1|AUO50877.1|1005231_1006140_+|Sulfate-adenylyltransferase
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP025745.1|AUO50878.1|1006149_1007589_+|Sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFNGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP025745.1|AUO50879.1|1007575_1008181_+|Adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP025745.1|AUO50880.1|1008231_1008555_+|Inner-membrane-protein-YgbE
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIVLHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP025745.1|AUO50881.1|1008745_1009057_+|Cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP025745.1|AUO50882.1|1009075_1009786_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP025745.1|AUO50883.1|1009785_1010265_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP025745.1|AUO50884.1|1010261_1011311_+|tRNA-pseudouridine(13)-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP025745.1|AUO50885.1|1011291_1012053_+|5'-nucleotidase
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: CP025745_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025745_4

2947317-2947445

Orphan

Consensus_repeat	Method
AGCGAGTCAATCCCCCCCTCACCGCCATATTCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025745_4

>merge|CP025745|4|2947317-2947445|CRISPRCasFinder
AGCGAGTCAATCCCCCCCTCACCGCCATATTCAAGAAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCACATATGACCCGAAGGGGCGAGCAAAGCGAGTCAATCCCTCCCTCACCGCCATATTCAAG

>CP025745|4|4|2947317-2947445|CRISPRCasFinder
AGCGAGTCAATCCCCCCCTCACCGCCATATTCAAG	AAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCACATATGACCCGAAGGGGCGAGCAA
AGCGAGTCAATCCCTCCCTCACCGCCATATTCAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP025745.1\|AUO52704.1\|2945911_2946589_+\|uncharacterized-protein	unknown	unknown	gnl\|CDD\|238494
CP025745.1\|AUO52708.1\|2950449_2950770_-\|ATP-dependent-Clp-protease-adapter-protein-ClpS	unknown	unknown	gnl\|CDD\|178809
CP025745.1\|AUO52706.1\|2947478_2947937_-\|hypothetical-protein	unknown	unknown	unknown
CP025745.1\|AUO52711.1\|2953387_2954506_-\|Macrolide-export-protein-MacA	unknown	unknown	gnl\|CDD\|183211
CP025745.1\|AUO52701.1\|2943702_2943921_+\|Translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
CP025745.1\|AUO52700.1\|2942686_2943391_+\|Leucyltransferase	unknown	unknown	gnl\|CDD\|234720
CP025745.1\|AUO52709.1\|2951093_2951315_+\|Cold-shock-like-protein-7.0	unknown	unknown	gnl\|CDD\|184960
CP025745.1\|AUO52710.1\|2951444_2953391_-\|Macrolide-export-ATP-binding/permease-protein-MacB	unknown	unknown	gnl\|CDD\|182528
CP025745.1\|AUO52702.1\|2944011_2944923_-\|Iron-regulated-virulence-regulatory-protein-IrgB	unknown	unknown	gnl\|CDD\|184959
CP025745.1\|AUO52698.1\|2939153_2940920_+\|ATP-binding/permease-protein	unknown	unknown	gnl\|CDD\|236870
CP025745.1\|AUO52697.1\|2938071_2939040_+\|Thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
CP025745.1\|AUO52695.1\|2932933_2936896_-\|DNA-translocase	unknown	unknown	gnl\|CDD\|236669
CP025745.1\|AUO52714.1\|2957458_2958358_+\|Lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
CP025745.1\|AUO52696.1\|2937030_2937525_-\|Leucine-responsive-regulatory-protein	unknown	unknown	gnl\|CDD\|183009
CP025745.1\|AUO52712.1\|2954651_2955602_+\|uncharacterized-protein	unknown	unknown	gnl\|CDD\|225537
CP025745.1\|AUO52707.1\|2948142_2950419_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|236828
CP025745.1\|AUO52699.1\|2940920_2942642_+\|ATP-binding/permease-protein	unknown	unknown	gnl\|CDD\|236865
CP025745.1\|AUO52703.1\|2945031_2945892_+\|Putative-quercetin-2,3-dioxygenase	unknown	unknown	gnl\|CDD\|224655
CP025745.1\|AUO52713.1\|2955598_2957257_-\|uncharacterized-protein	unknown	unknown	gnl\|CDD\|226121
CP025745.1\|AUO52715.1\|2958501_2960154_+\|Hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391

Protein	Function_ID	Function_description	E-value
CP025745.1\|AUO52704.1\|2945911_2946589_+\|uncharacterized-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	2.52811e-61
CP025745.1\|AUO52708.1\|2950449_2950770_-\|ATP-dependent-Clp-protease-adapter-protein-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.53033e-48
CP025745.1\|AUO52711.1\|2953387_2954506_-\|Macrolide-export-protein-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
CP025745.1\|AUO52701.1\|2943702_2943921_+\|Translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
CP025745.1\|AUO52700.1\|2942686_2943391_+\|Leucyltransferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	2.02896e-141
CP025745.1\|AUO52709.1\|2951093_2951315_+\|Cold-shock-like-protein-7.0	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	5.83011e-48
CP025745.1\|AUO52710.1\|2951444_2953391_-\|Macrolide-export-ATP-binding/permease-protein-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
CP025745.1\|AUO52702.1\|2944011_2944923_-\|Iron-regulated-virulence-regulatory-protein-IrgB	gnl\|CDD\|184959	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional.	0
CP025745.1\|AUO52698.1\|2939153_2940920_+\|ATP-binding/permease-protein	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP025745.1\|AUO52697.1\|2938071_2939040_+\|Thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
CP025745.1\|AUO52695.1\|2932933_2936896_-\|DNA-translocase	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
CP025745.1\|AUO52714.1\|2957458_2958358_+\|Lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	1.91685e-118
CP025745.1\|AUO52696.1\|2937030_2937525_-\|Leucine-responsive-regulatory-protein	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	1.61477e-117
CP025745.1\|AUO52712.1\|2954651_2955602_+\|uncharacterized-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	2.48108e-129
CP025745.1\|AUO52707.1\|2948142_2950419_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
CP025745.1\|AUO52699.1\|2940920_2942642_+\|ATP-binding/permease-protein	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP025745.1\|AUO52703.1\|2945031_2945892_+\|Putative-quercetin-2,3-dioxygenase	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	2.82417e-104
CP025745.1\|AUO52713.1\|2955598_2957257_-\|uncharacterized-protein	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
CP025745.1\|AUO52715.1\|2958501_2960154_+\|Hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0

>CP025745.1|AUO52704.1|2945911_2946589_+|uncharacterized-protein
MSSPANFNGLRPVIDVNDSVMLLIDHQSGLFQTVGDMPMPELRARAAALAKMATLAKMPVITTASVPQGPNGPLIPEIHANAPHAQYIARKGEINAWDNEDFVKAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITLARIVQAGVVPMDTAAVASELQGTWNREDAAAWADVYTQVFPAYQLLIESYSKAQDVVKNNEMLDSQR
>CP025745.1|AUO52703.1|2945031_2945892_+|Putative-quercetin-2,3-dioxygenase
MKQITGVYTAPRPHWVGDGFPVRSLFSYQSHAQQLSPFLLLDYAGPHTFTPGNEKRGVGEHPHRGFETVTIVYSGEVEHRDSTGRGGVIGPGDVQWMTAGAGILHEEFHSDAFTRRGGELEMVQLWVNLPMKDKMTTPGYQSITHDVIPTVTLPDDAGVVRVIAGRYEETKGPAHTFSPLNVWDMRLQRNRQLTLAQPEGWSTALVVLKGNITVNGTTPVNEAQLVVLSQQGKTLHLEASSDASVLLLSGEPLNEPIVGYGPFVMNTKQEIAEAVRDFNSGRFGQI
>CP025745.1|AUO52702.1|2944011_2944923_-|Iron-regulated-virulence-regulatory-protein-IrgB
MIKTDLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVTEVGQTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPVTLLHVHIGPMLAKFMARYPDVSLQLEATNRRVDVVGEGVDVAIRVRPRPFEDSDLVMRVLADRGHRLFASPDLIARMGIPSAPAELSHWPGLSLASGKHIHRWELYGPQGARAEVHFTPRMITTDMLALREAAMAGVGLVQLPVLMVKEQLAAGELVAVLEEWEPRREVIHAVFPSRRGLLPSVRALVDFLTEEYARMVEE
>CP025745.1|AUO52701.1|2943702_2943921_+|Translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>CP025745.1|AUO52700.1|2942686_2943391_+|Leucyltransferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQHGIFPWFSPGDPILWWSPDPRAVLWPEKFHLSRSMKRFHNASPYRVTLNYAFDRVIDGCANHRDEGTWITRGIEEAYRRLHELGHAHSIEVWRDRELVGGMYGVSQGALFCGESMFSRQENASKTALLVFCAEFIRHGGKLIDCQVLNNHTASLGAIEIPRRDYLDHLAALRQQPLASRFWVPRTLFLPRK
>CP025745.1|AUO52699.1|2940920_2942642_+|ATP-binding/permease-protein
MRALLPYLTLYKRHKWMLTLGIALAILTLLASIGLLTLSGWFLSASAIAGFAGIYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYQQGELLNRIVADVDTLDHLYLRVISPLVGAFVVIMIVTLGLSVLDVTLAITLGGIMLLTLFIMPPVFYRAGKNTGQNLTHLRGQYRQQLTSWLQGQAELTIFGASKRYRAQMEATELQWHEAQRRQSELTALSQALMLLIGALAVMLMLWMASGGVGGNTQPGALIALFVFCALAAFESLAPVTGAFQHLGQVIASALRITELTEQKPEVTFPQAETPAPEKVTLTLRDVSFRYPDQPINALNALSLQANPGEHVAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDLPLSSLSESALRRTISVVPQRVHLFSATLRDNLLLAAPNASDEALSDMLRRVGLENLLEDSGLNSWLGEGGRLLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESEMLELLADVMREKTILMVTHRLRGLARFDQIIVMDDGRIIERGTHAELLAGQGRYYQFKQRL
>CP025745.1|AUO52698.1|2939153_2940920_+|ATP-binding/permease-protein
MNKTRQKELTRWLKQQSVISQRWLNISRLLGFMSGVLIVAQAWIMARILQHMIMENIPREALLLPFILLILIFVLRAWVVWLRERVGFHAGQHIRFEIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVCVPLLIVAAIFPSNWAAALILLGTAPLIPLFMAMVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAETESIRAASQDFRQRTMEVLRLAFLSSGVLEFFTSLSIALVAVYFGFSYLGELNFGHYGTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFLETPLAHPARGEVELAENEPVTIDAVNLIITSPEGKTLAGPLNFSLAAGERAVLVGRSGSGKSSLLNVLSGFLSYQGSLRINGVELRDLSPESWRQHLSWVGQNPQLPAATLRENVLLARPDASEQELYAALDAAWVSEFLPLLPQGVDTPLGNHASRLSVGQAQRVAVARALLNPCQLLLLDEPAASLDAHSEQRVMQALKAASKRQTTLMVTHQLEDLADWDAIWVMQDGAIVEQGSYAELSAANGAFATLLAHRQEDI
>CP025745.1|AUO52697.1|2938071_2939040_+|Thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHAAKFETEIIFDYINNVDLQNRPFRLTGDSAEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGLRLRDTQQSDNIETLDIAGLFVAIGHSPNTALFEGQLELENGYIKVQSGTHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADASK
>CP025745.1|AUO52696.1|2937030_2937525_-|Leucine-responsive-regulatory-protein
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>CP025745.1|AUO52695.1|2932933_2936896_-|DNA-translocase
MSQEYTEDKDVTLTKLSSGRRLLEALLILIALFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGAPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSTDDYIDYFAVSLRLIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIMLLCIWAAGLTLFTGWSWVSIAEKLGGWLLNILTFASNRTRRDDTWVDDEEYDDEYDEETDGVQRESRRARILRGALARRKRLAEKFSNPRGRQTDAALFSGKRMDDDEDIQYSARGVAADPDDVLFSGNRATQPEYDEYDPLLNGHSVTEPVAAAAAATAVTQTWAASADPIMQTPPMPGAEPVVAQPTVEWQPVPGPQTGEPVIAPAPEGYQPHPQYAQPQEAQSAPWQQPVPVASAPQYAATPATAAEYDSLAPQETQPQWQAPDAEQHWQPEPVYQPEPIAAEPSHMPPPVIEQPVATEPEPDTEETRPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKENVPVKPTVSVAPSIPPVEAVAAAASLDAGIKSGALAAGAAAAAPAFSLATGGAPRPQVKEGIGPQLPRPNRVRVPTRRELASYGIKLPSQRIAEEKAREAELNQYETGAQLTDEEIDAMHQDELARQFAQSQQHRYGETYQHDTQQAEDDDTAAEAELARQFAASQQQRYSGEQPAGAQPFSLDDLDFSPMKVLVDEGPHEPLFTPGVMPESTPVQQPVAPQPQQPVAPQPQYQQPQQPVAPQPQYQQPQYQQPQQPVAPQPQYQQPQPQYQQPQQPVAPQPQYQQPQQPTAPQDSLIHPLLMRNGDSRPLQRPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRENPSPLTVVLGKDIAGDPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWSVNEMERRYKLMSALGVRNLAGYNEKIAEAARMGRPIPDPYWKPGDSMDVQHPVLEKLPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYSGPNSTMPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGGGGFDGGEELDALFDQAVNFVTQKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSAQGHNGNREVLAPPPFE
>CP025745.1|AUO52706.1|2947478_2947937_-|hypothetical-protein
MTRCARPSGSLLAGSSFVQLAAPLLSPSLGLAPSGPEQALFKNAPGVFVPNPGRWFSSPLSLGDIYKQKARTSVQALNLNMAVRGGLTRCARPSGSLLAGSSFVQLAAPLLSPSLGLAPSGPEQALFKNAPGVFVSNPGRWFSSPLSLGGYI
>CP025745.1|AUO52707.1|2948142_2950419_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDIVNFISHGTRKDEPSQSSDLGNQPTGDEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDNAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMGEIKKVFTPEFRNRLDNIIWFDHLSGEVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNALTYGFQSAQKHKPEAAH
>CP025745.1|AUO52708.1|2950449_2950770_-|ATP-dependent-Clp-protease-adapter-protein-ClpS
MGKTNDWLDFDQLVEDSVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>CP025745.1|AUO52709.1|2951093_2951315_+|Cold-shock-like-protein-7.0
METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASVIVPIEAEAVA
>CP025745.1|AUO52710.1|2951444_2953391_-|Macrolide-export-ATP-binding/permease-protein-MacB
MTALLELCNVSRSYPSGEEQVAVLKDISLQIHAGEMVAIVGVSGSGKSTLMNILGCLDKPTSGTYRVAGRDVSTLDPDALAQLRREHFGFIFQRYHLLSHLTAAQNVEIPAVYAGIERKKRQARARELLLRLGLSDRVDYPPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILRQLRDRGHTVIIVTHDPLIAAQAERIIEIHDGKIVHNPPAQEKKREQGVDAAVVNTAPGWRQFASSFREALSMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRAMGTNTIDIHPGKDFGDDNPQYRQALKYDDLVAIQKQPWVNSATPSVSKSLRLRYGNIDIAVNANGVSGDYFNVYGMSFREGNTFNAVQQQDRAQVVVLDANTRRQLFPNKANVVGEVVLAGNMPVIVIGVAEEKPSMYGNSNLLQVWLPYSTMSDRIMGQSWLNSITVRVKDGVDSDQAEQQLTRLLTLRHGKKDFFTWNMDSVLKTAEKTTYTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGISLSMFIAFMLQLFLPGWEIGFSLTALASAFLCSTFTGILFGWLPARNAARLDPVDALARE
>CP025745.1|AUO52711.1|2953387_2954506_-|Macrolide-export-protein-MacA
MRAKGKKFKKRYLVIILILLVGGMAGWRMINAPLPTYQTLIVRPGDLEQSVLATGKLDALRKVDVGAQVSGQLKTLLVSIGDNVKKDQLLGVIDPDQAENQIKEVEATLMELNAERQQAAAELKLARVTLARQQQLAKTQAVSQQDLDTAATEMAVKQARIGTIDAQIKRNRASLDTAKTNLEYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLRAGQKAWFTIAGDPQTRYEGVLKDILPTPEKINDAIFYYARFEVPNPKRILRLDMTAQVYIQLMDVKNVLIIPLAALGEPVGGNRYKVALLRNGEKREREVVIGERNDTDVEVVKGLEAGDEVIIGESRPGATP
>CP025745.1|AUO52712.1|2954651_2955602_+|uncharacterized-protein
MTQLTDNTWYTSDYISPLQLFIRLTRGQLQPGKFWRKASFRRKFLIRSLVMPRATSQLLTNLTQWPELNTLLARQPRLPIRLHRPYMAVNIKRDFALDALCFHYQQMRQLLSREQQVSYLSQYGLNLAKFETKTGELFQLDLVSLVSLDKEGESTIVVRDAQLRILAEITFTLCRFNQQRTLFIGGLQGAANDVPHEIIQQATKACHGLFPKRIVMEALCQFAQVFQAEKIIAVSNDAHVYRSWRYMDKKTQMHADYDAFWESLGGERIKGNYYTLPLAIARKSEAEIASKKRAEYRRRYALLDSVVEQVPATFKR
>CP025745.1|AUO52713.1|2955598_2957257_-|uncharacterized-protein
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPELDLYHFVREDFWFPPGDIKGREHHLHIILTFRETQPGRHRVRRYRALEACWSPCEDDFHRIFYRLEGECGADGSVMTLRSFLNSDGQPLPVENINDQVRHLVRLMPVLRLRDARFMRRIRNGTVPNVPDVEVTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEHYFSEQGAGQARHRLMRRRSQNEQRSWRYLDIINRMIDKPGSRSHRVILLGLFSTLLQAKGTLRLHKDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRIATTNSGELLSLTPVEHVVRLVRESSRVAAWRLGPGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPALDMEHFMYRQGFADVFHRVAQLPPNVPMNTRKIITKAIHRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMFSRVVWLARGRAD
>CP025745.1|AUO52714.1|2957458_2958358_+|Lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRHKAALQLINRLLSWIVYLILFFMGISLAFLDNLASNLVAIFHYSAVSITIILLCNIAALLWLERILPWRHHHQQEKLPSRIAMALESLQLCGVVVLGFVIGLSGLSVLQHATEASEYTLIFLLFLVGIQLRNSGMTLKQIVLNRRGMMVAVVVVASSLLGGVINAFILDLPLKTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELLAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGVEIVPAAIVHGFILSLLVPLLMAFFSA
>CP025745.1|AUO52715.1|2958501_2960154_+|Hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINHDVDNFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLSVDANAHCDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECAMEIGQMNFKVMSILDAGETTKYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLAQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGSYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLVGGCDGARGERNYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFFTPDLLAILNEKFGLRSVTTVEEDMKQLLSA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP025745_3	3.4\|1002454\|32\|CP025745\|CRISPRCasFinder,CRT	1002454-1002485	32	NZ_KU963390	Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence	11380-11411	0	1.0
CP025745_3	3.4\|1002454\|32\|CP025745\|CRISPRCasFinder,CRT	1002454-1002485	32	NZ_KU963390	Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence	51216-51247	0	1.0
CP025745_3	3.4\|1002454\|32\|CP025745\|CRISPRCasFinder,CRT	1002454-1002485	32	NZ_CP010193	Escherichia coli strain M8 plasmid B, complete genome	13579-13610	0	1.0
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	NZ_CP010173	Escherichia coli strain H8 plasmid A, complete sequence	43964-43995	2	0.938
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	NZ_CP021729	Escherichia coli strain Combat11I9 plasmid pCombat11I9-3, complete sequence	74371-74402	2	0.938
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	NZ_CP046005	Escherichia coli strain 1919D3 plasmid p1919D3-2, complete sequence	16994-17025	2	0.938
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	MG592476	Vibrio phage 1.104.O._10N.286.49.A12, partial genome	53386-53417	2	0.938
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	MG592538	Vibrio phage 1.171.O._10N.261.52.F12, partial genome	52140-52171	2	0.938
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	MG592428	Vibrio phage 1.046.O._10N.286.52.E3, partial genome	57590-57621	2	0.938
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	CP054337	Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence	29797-29828	4	0.875
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	NZ_CP021537	Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence	42949-42980	4	0.875
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	NZ_CP026938	Escherichia coli strain CFS3292 plasmid pCFS3292-3, complete sequence	78817-78848	4	0.875
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	NZ_MH844525	Escherichia coli strain SCEC128 plasmid pSCEC128, complete sequence	28593-28624	4	0.875
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	NZ_MH580301	Escherichia coli strain 1107 plasmid p1107-99K, complete sequence	9058-9089	4	0.875
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	NZ_CP042508	Leclercia adecarboxylata strain E1 plasmid pE1_003, complete sequence	12322-12353	4	0.875
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	NZ_CP040893	Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence	56847-56878	4	0.875
CP025745_3	3.4\|1002454\|32\|CP025745\|CRISPRCasFinder,CRT	1002454-1002485	32	NC_011148	Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid, complete sequence	16491-16522	4	0.875
CP025745_3	3.6\|1002576\|32\|CP025745\|CRISPRCasFinder,CRT	1002576-1002607	32	NZ_CP041251	Raoultella electrica strain DSM 102253 plasmid unnamed4, complete sequence	4814-4845	4	0.875
CP025745_3	3.10\|1002820\|32\|CP025745\|CRISPRCasFinder,CRT	1002820-1002851	32	NC_021559	Prochlorococcus phage P-SSM3 genomic sequence	102367-102398	5	0.844
CP025745_3	3.26\|1003799\|32\|CP025745\|CRISPRCasFinder,CRT	1003799-1003830	32	NZ_CP022304	Thalassococcus sp. S3 plasmid pS3A, complete sequence	1984-2015	5	0.844
CP025745_3	3.4\|1002454\|32\|CP025745\|CRISPRCasFinder,CRT	1002454-1002485	32	NC_017903	Escherichia coli Xuzhou21 plasmid pO157_Sal, complete sequence	7494-7525	6	0.812
CP025745_3	3.10\|1002820\|32\|CP025745\|CRISPRCasFinder,CRT	1002820-1002851	32	MN694803	Marine virus AFVG_250M814, complete genome	36099-36130	6	0.812
CP025745_3	3.26\|1003799\|32\|CP025745\|CRISPRCasFinder,CRT	1003799-1003830	32	NZ_CP023072	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence	328890-328921	6	0.812
CP025745_2	2.7\|985280\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985280-985311	32	KX657793	Mycobacterium phage DarthPhader, complete genome	27141-27172	7	0.781
CP025745_2	2.8\|985341\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985341-985372	32	NZ_CP006990	Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence	478474-478505	7	0.781
CP025745_2	2.8\|985341\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985341-985372	32	NZ_CP013556	Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence	716796-716827	7	0.781
CP025745_2	2.8\|985341\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985341-985372	32	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	633092-633123	7	0.781
CP025745_2	2.8\|985341\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985341-985372	32	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	493788-493819	7	0.781
CP025745_2	2.8\|985341\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985341-985372	32	NZ_CP013567	Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence	716796-716827	7	0.781
CP025745_2	2.8\|985341\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985341-985372	32	NZ_CP021127	Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence	443317-443348	7	0.781
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	NC_017385	Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence	198251-198282	7	0.781
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	NZ_CP012910	Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence	46733-46764	7	0.781
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	NC_014626	Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence	6403-6434	7	0.781
CP025745_2	2.18\|985951\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985951-985982	32	MF495478	Aeromonas salmonicida plasmid pS121-1b, complete sequence	117450-117481	7	0.781
CP025745_2	2.18\|985951\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985951-985982	32	NZ_CP038450	Aeromonas media strain R50-22 plasmid pAeme6, complete sequence	31198-31229	7	0.781
CP025745_2	2.18\|985951\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985951-985982	32	NZ_CP022170	Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence	125043-125074	7	0.781
CP025745_3	3.18\|1003310\|32\|CP025745\|CRISPRCasFinder,CRT	1003310-1003341	32	MH651182	Gordonia phage Neville, complete genome	14047-14078	7	0.781
CP025745_2	2.6\|985219\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985219-985250	32	MN693945	Marine virus AFVG_250M952, complete genome	30837-30868	8	0.75
CP025745_2	2.6\|985219\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985219-985250	32	MT773554	Myoviridae sp. isolate BML_2 genomic sequence	32798-32829	8	0.75
CP025745_2	2.14\|985707\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985707-985738	32	MK448563	Streptococcus satellite phage Javan601, complete genome	3004-3035	8	0.75
CP025745_2	2.14\|985707\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985707-985738	32	MK448565	Streptococcus satellite phage Javan603, complete genome	3286-3317	8	0.75
CP025745_2	2.14\|985707\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985707-985738	32	MK448571	Streptococcus satellite phage Javan609, complete genome	3004-3035	8	0.75
CP025745_2	2.14\|985707\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985707-985738	32	MK448575	Streptococcus satellite phage Javan612, complete genome	3004-3035	8	0.75
CP025745_2	2.14\|985707\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985707-985738	32	MK448567	Streptococcus satellite phage Javan605, complete genome	3004-3035	8	0.75
CP025745_2	2.14\|985707\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985707-985738	32	MK448574	Streptococcus satellite phage Javan611, complete genome	2668-2699	8	0.75
CP025745_2	2.14\|985707\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985707-985738	32	MK448578	Streptococcus satellite phage Javan615, complete genome	2609-2640	8	0.75
CP025745_2	2.14\|985707\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985707-985738	32	MK448577	Streptococcus satellite phage Javan614, complete genome	2586-2617	8	0.75
CP025745_2	2.14\|985707\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985707-985738	32	MK448573	Streptococcus satellite phage Javan610, complete genome	3036-3067	8	0.75
CP025745_2	2.14\|985707\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985707-985738	32	MK448568	Streptococcus satellite phage Javan606, complete genome	3004-3035	8	0.75
CP025745_2	2.14\|985707\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985707-985738	32	MK448570	Streptococcus satellite phage Javan608, complete genome	3036-3067	8	0.75
CP025745_2	2.14\|985707\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985707-985738	32	MK448564	Streptococcus satellite phage Javan602, complete genome	3286-3317	8	0.75
CP025745_2	2.14\|985707\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985707-985738	32	MK448566	Streptococcus satellite phage Javan604, complete genome	3004-3035	8	0.75
CP025745_2	2.15\|985768\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985768-985799	32	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	48479-48510	8	0.75
CP025745_2	2.16\|985829\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985829-985860	32	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	48479-48510	8	0.75
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	227163-227194	8	0.75
CP025745_2	2.18\|985951\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985951-985982	32	NZ_CP048109	Klebsiella michiganensis strain BD177 plasmid unnamed1	11553-11584	8	0.75
CP025745_2	2.19\|986012\|32\|CP025745\|CRISPRCasFinder,CRT	986012-986043	32	JX434031	Pseudomonas phage JBD24, complete genome	2242-2273	8	0.75
CP025745_3	3.5\|1002515\|32\|CP025745\|CRISPRCasFinder,CRT	1002515-1002546	32	NZ_CP024786	Nostoc flagelliforme CCNUN1 plasmid pNFSY01, complete sequence	14571-14602	8	0.75
CP025745_3	3.5\|1002515\|32\|CP025745\|CRISPRCasFinder,CRT	1002515-1002546	32	NZ_CP026687	Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM5, complete sequence	3635-3666	8	0.75
CP025745_3	3.15\|1003127\|32\|CP025745\|CRISPRCasFinder,CRT	1003127-1003158	32	NZ_CP049029	Fluviibacterium aquatile strain SC52 plasmid pSC52_1, complete sequence	198521-198552	8	0.75
CP025745_3	3.17\|1003249\|32\|CP025745\|CRISPRCasFinder,CRT	1003249-1003280	32	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	290305-290336	8	0.75
CP025745_2	2.7\|985280\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985280-985311	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	1179902-1179933	9	0.719
CP025745_2	2.11\|985524\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985524-985555	32	MN694334	Marine virus AFVG_250M1054, complete genome	5152-5183	9	0.719
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	1162182-1162213	9	0.719
CP025745_3	3.5\|1002515\|32\|CP025745\|CRISPRCasFinder,CRT	1002515-1002546	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	64408-64439	9	0.719
CP025745_3	3.5\|1002515\|32\|CP025745\|CRISPRCasFinder,CRT	1002515-1002546	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	88752-88783	9	0.719
CP025745_3	3.10\|1002820\|32\|CP025745\|CRISPRCasFinder,CRT	1002820-1002851	32	MN693670	Marine virus AFVG_250M508, complete genome	3528-3559	9	0.719
CP025745_3	3.10\|1002820\|32\|CP025745\|CRISPRCasFinder,CRT	1002820-1002851	32	MN693662	Marine virus AFVG_250M383, complete genome	3578-3609	9	0.719
CP025745_3	3.10\|1002820\|32\|CP025745\|CRISPRCasFinder,CRT	1002820-1002851	32	MN694314	Marine virus AFVG_250M513, complete genome	34322-34353	9	0.719
CP025745_3	3.13\|1003004\|33\|CP025745\|CRISPRCasFinder,CRT	1003004-1003036	33	NC_014825	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence	201147-201179	9	0.727
CP025745_3	3.17\|1003249\|32\|CP025745\|CRISPRCasFinder,CRT	1003249-1003280	32	NZ_CP017833	Butyrivibrio hungatei strain MB2003 plasmid pNP6, complete sequence	3577-3608	9	0.719
CP025745_3	3.26\|1003799\|32\|CP025745\|CRISPRCasFinder,CRT	1003799-1003830	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1929932-1929963	9	0.719
CP025745_3	3.26\|1003799\|32\|CP025745\|CRISPRCasFinder,CRT	1003799-1003830	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1709399-1709430	9	0.719
CP025745_2	2.5\|985158\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985158-985189	32	MN694012	Marine virus AFVG_250M887, complete genome	22169-22200	10	0.688
CP025745_2	2.7\|985280\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985280-985311	32	NZ_KU140623	Sinorhizobium sp. M14 plasmid pSinB, complete sequence	129526-129557	10	0.688
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	NZ_CP010682	Phaeobacter piscinae strain P14 plasmid pP14_a, complete sequence	38809-38840	10	0.688
CP025745_2	2.13\|985646\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985646-985677	32	NZ_CP010644	Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence	38859-38890	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	KX349325	Cyanophage S-RIM12 isolate W1_24_0910, complete genome	14478-14509	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	KX349322	Cyanophage S-RIM12 isolate Sn_31_0910, complete genome	14481-14512	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	KX349320	Cyanophage S-RIM12 isolate RW_29_1109, complete genome	14619-14650	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	KX349310	Cyanophage S-RIM12 isolate RW_01_0310, complete genome	14374-14405	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	KX349321	Cyanophage S-RIM12 isolate Sn_07_0910, complete genome	14374-14405	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	KX349324	Cyanophage S-RIM12 isolate W1_12_0610, complete genome	14571-14602	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	KX349314	Cyanophage S-RIM12 isolate RW_07_1112, complete genome	14619-14650	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	KX349316	Cyanophage S-RIM12 isolate RW_22_0110, complete genome	14619-14650	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	KJ019063	Synechococcus phage ACG-2014c isolate Syn7803C97, complete genome	164294-164325	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	KJ019027	Synechococcus phage ACG-2014c isolate Syn7803C43, complete genome	166603-166634	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	KX349315	Cyanophage S-RIM12 isolate RW_14_0101, complete genome	14625-14656	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	KX349317	Cyanophage S-RIM12 isolate RW_25_0210, complete genome	14625-14656	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	NC_019444	Synechococcus phage S-MbCM6, complete genome	166612-166643	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	KJ019128	Synechococcus phage ACG-2014c isolate Syn7803US88, complete genome	166709-166740	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	NC_015285	Prochlorococcus phage Syn33, complete genome	14618-14649	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	KX349309	Cyanophage S-RIM12 isolate Np_22_1112, complete genome	14613-14644	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	KX349319	Cyanophage S-RIM12 isolate RW_28_1109, complete genome	14604-14635	10	0.688
CP025745_2	2.17\|985890\|32\|CP025745\|PILER-CR,CRISPRCasFinder,CRT	985890-985921	32	KX349318	Cyanophage S-RIM12 isolate RW_27_0310, complete genome	14685-14716	10	0.688
CP025745_3	3.10\|1002820\|32\|CP025745\|CRISPRCasFinder,CRT	1002820-1002851	32	MN694051	Marine virus AFVG_250M33, complete genome	34372-34403	10	0.688
CP025745_3	3.27\|1003860\|32\|CP025745\|CRISPRCasFinder,CRT	1003860-1003891	32	CP054927	Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence	47822-47853	11	0.656

1. spacer 3.4|1002454|32|CP025745|CRISPRCasFinder,CRT matches to NZ_KU963390 (Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence) position: , mismatch: 0, identity: 1.0

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
tttggttgatgcgtcaaacctcgctaactttg	Protospacer
********************************

2. spacer 3.4|1002454|32|CP025745|CRISPRCasFinder,CRT matches to NZ_KU963390 (Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence) position: , mismatch: 0, identity: 1.0

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
tttggttgatgcgtcaaacctcgctaactttg	Protospacer
********************************

3. spacer 3.4|1002454|32|CP025745|CRISPRCasFinder,CRT matches to NZ_CP010193 (Escherichia coli strain M8 plasmid B, complete genome) position: , mismatch: 0, identity: 1.0

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
tttggttgatgcgtcaaacctcgctaactttg	Protospacer
********************************

4. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010173 (Escherichia coli strain H8 plasmid A, complete sequence) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagccgaaaa	Protospacer
*********************** *****.**

5. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021729 (Escherichia coli strain Combat11I9 plasmid pCombat11I9-3, complete sequence) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagccgaaaa	Protospacer
*********************** *****.**

6. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046005 (Escherichia coli strain 1919D3 plasmid p1919D3-2, complete sequence) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagccgaaaa	Protospacer
*********************** *****.**

7. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MG592476 (Vibrio phage 1.104.O._10N.286.49.A12, partial genome) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgcagggatattgcgccgagccgagaa	Protospacer
******** ************** ********

8. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MG592538 (Vibrio phage 1.171.O._10N.261.52.F12, partial genome) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatactgcgccgagccgagaa	Protospacer
***************.******* ********

9. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MG592428 (Vibrio phage 1.046.O._10N.286.52.E3, partial genome) position: , mismatch: 2, identity: 0.938

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgcagggatattgcgccgagccgagaa	Protospacer
******** ************** ********

10. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to CP054337 (Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***.

11. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021537 (Escherichia coli strain AR_0119 plasmid unitig_3, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***.

12. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026938 (Escherichia coli strain CFS3292 plasmid pCFS3292-3, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***.

13. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH844525 (Escherichia coli strain SCEC128 plasmid pSCEC128, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***.

14. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH580301 (Escherichia coli strain 1107 plasmid p1107-99K, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattgcgccgagcagaggc	Protospacer
*********************** ** ***.

15. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042508 (Leclercia adecarboxylata strain E1 plasmid pE1_003, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattacgccgcgcagtcaa	Protospacer
*****************.******** *  **

16. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040893 (Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence) position: , mismatch: 4, identity: 0.875

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
gcgtgcgccgggatattacgccgcgcagtcaa	Protospacer
*****************.******** *  **

17. spacer 3.4|1002454|32|CP025745|CRISPRCasFinder,CRT matches to NC_011148 (Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid, complete sequence) position: , mismatch: 4, identity: 0.875

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
cctgattgatgcttcaaacctcgctaactttg	Protospacer
..**.******* *******************

18. spacer 3.6|1002576|32|CP025745|CRISPRCasFinder,CRT matches to NZ_CP041251 (Raoultella electrica strain DSM 102253 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.875

gagcgatgttggcatggcattggtttactgta	CRISPR spacer
gggtgatgtaggtatggcattggtttactgta	Protospacer
*.*.***** **.*******************

19. spacer 3.10|1002820|32|CP025745|CRISPRCasFinder,CRT matches to NC_021559 (Prochlorococcus phage P-SSM3 genomic sequence) position: , mismatch: 5, identity: 0.844

gacgct-tcacctgcatcaaattctcctccagt	CRISPR spacer
-acactatcacctgcagcaaattctgctccaga	Protospacer
 **.** ********* ******** ******

20. spacer 3.26|1003799|32|CP025745|CRISPRCasFinder,CRT matches to NZ_CP022304 (Thalassococcus sp. S3 plasmid pS3A, complete sequence) position: , mismatch: 5, identity: 0.844

gcagaaacagaaaccggatatgagcc-atccat	CRISPR spacer
gaagagacagaaaccggctatgagctgatcca-	Protospacer
* ***.*********** *******. *****

21. spacer 3.4|1002454|32|CP025745|CRISPRCasFinder,CRT matches to NC_017903 (Escherichia coli Xuzhou21 plasmid pO157_Sal, complete sequence) position: , mismatch: 6, identity: 0.812

tttggttgatgcgtcaaacctcgctaactttg	CRISPR spacer
ccttattgatgcttctaacctcgctaactttg	Protospacer
..* .******* ** ****************

22. spacer 3.10|1002820|32|CP025745|CRISPRCasFinder,CRT matches to MN694803 (Marine virus AFVG_250M814, complete genome) position: , mismatch: 6, identity: 0.812

gacgcttcacctgcatcaaattctcctccagt--	CRISPR spacer
aacccttcacctgcatcatattct--tccaggcg	Protospacer
.** ************** *****  *****

23. spacer 3.26|1003799|32|CP025745|CRISPRCasFinder,CRT matches to NZ_CP023072 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence) position: , mismatch: 6, identity: 0.812

gcagaaacagaaaccggatatgagccatccat	CRISPR spacer
tgacgaacagaaaccggatatgaggcatccct	Protospacer
  * .******************* ***** *

24. spacer 2.7|985280|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KX657793 (Mycobacterium phage DarthPhader, complete genome) position: , mismatch: 7, identity: 0.781

ccgcagaacgccgcatcgccgaactggacaaa	CRISPR spacer
cgttcgaccgccgcatagccgaactggacaag	Protospacer
*  . ** ******** **************.

25. spacer 2.8|985341|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

26. spacer 2.8|985341|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

27. spacer 2.8|985341|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

28. spacer 2.8|985341|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

29. spacer 2.8|985341|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

30. spacer 2.8|985341|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 7, identity: 0.781

tgccggtttatctgctccagacc--gatcgacta	CRISPR spacer
tgccggtctatctgctcctgaccaaggccgat--	Protospacer
*******.********** ****  *..***.

31. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NC_017385 (Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

gcgtg-cgccgggatattgcgccgcgccgagaa	CRISPR spacer
-catgccgccgcgatattgccccgcgccgccag	Protospacer
 *.** ***** ******** ********  *.

32. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012910 (Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

gcgtg-cgccgggatattgcgccgcgccgagaa	CRISPR spacer
-catgccgccgcgatattgccccgcgccgccag	Protospacer
 *.** ***** ******** ********  *.

33. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NC_014626 (Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence) position: , mismatch: 7, identity: 0.781

gcgtg-cgccgggatattgcgccgcgccgagaa	CRISPR spacer
-catgccgccgcgatattgccccgcgccgccag	Protospacer
 *.** ***** ******** ********  *.

34. spacer 2.18|985951|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MF495478 (Aeromonas salmonicida plasmid pS121-1b, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtggtgtatatcggtcttgatgcgttgtc	CRISPR spacer
gcagtggtctatatcggtctggatgccatgac	Protospacer
*  ***** *********** *****  ** *

35. spacer 2.18|985951|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038450 (Aeromonas media strain R50-22 plasmid pAeme6, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtggtgtatatcggtcttgatgcgttgtc	CRISPR spacer
gcagtggtctatatcggtctggatgccatgac	Protospacer
*  ***** *********** *****  ** *

36. spacer 2.18|985951|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022170 (Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtggtgtatatcggtcttgatgcgttgtc	CRISPR spacer
gcagtggtctatatcggtctggatgccatgac	Protospacer
*  ***** *********** *****  ** *

37. spacer 3.18|1003310|32|CP025745|CRISPRCasFinder,CRT matches to MH651182 (Gordonia phage Neville, complete genome) position: , mismatch: 7, identity: 0.781

ccttggcggcagccacctgagcaactgtcggg	CRISPR spacer
caatctcggcagtcacctgagcaactgtcaag	Protospacer
*  *  ******.****************..*

38. spacer 2.6|985219|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MN693945 (Marine virus AFVG_250M952, complete genome) position: , mismatch: 8, identity: 0.75

accgttatctgctggttgatacttccccgagc---	CRISPR spacer
gccgttatcggctggtttatactt---aaagcaaa	Protospacer
.******** ******* ******    .***

39. spacer 2.6|985219|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MT773554 (Myoviridae sp. isolate BML_2 genomic sequence) position: , mismatch: 8, identity: 0.75

accgttatctgctggttgatacttccccgagc	CRISPR spacer
aacattatctgctggttgatagtttccataat	Protospacer
* *.***************** **.**  *..

40. spacer 2.14|985707|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MK448563 (Streptococcus satellite phage Javan601, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

41. spacer 2.14|985707|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MK448565 (Streptococcus satellite phage Javan603, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

42. spacer 2.14|985707|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MK448571 (Streptococcus satellite phage Javan609, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

43. spacer 2.14|985707|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MK448575 (Streptococcus satellite phage Javan612, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

44. spacer 2.14|985707|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MK448567 (Streptococcus satellite phage Javan605, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

45. spacer 2.14|985707|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MK448574 (Streptococcus satellite phage Javan611, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

46. spacer 2.14|985707|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MK448578 (Streptococcus satellite phage Javan615, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

47. spacer 2.14|985707|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MK448577 (Streptococcus satellite phage Javan614, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

48. spacer 2.14|985707|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MK448573 (Streptococcus satellite phage Javan610, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

49. spacer 2.14|985707|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MK448568 (Streptococcus satellite phage Javan606, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

50. spacer 2.14|985707|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MK448570 (Streptococcus satellite phage Javan608, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

51. spacer 2.14|985707|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MK448564 (Streptococcus satellite phage Javan602, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

52. spacer 2.14|985707|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MK448566 (Streptococcus satellite phage Javan604, complete genome) position: , mismatch: 8, identity: 0.75

tccttttattctaatgggttagatagggtaga	CRISPR spacer
gaaatttattctaacgagttagatagggttgc	Protospacer
    **********.*.************ *

53. spacer 2.15|985768|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 8, identity: 0.75

aaaactgcaccgccgctgccactgagtttgct	CRISPR spacer
gatgtagcacagccgctgccactgattttggt	Protospacer
.* .. **** ************** **** *

54. spacer 2.16|985829|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 8, identity: 0.75

aaaactgcaccgccgctgccactgagtttgct	CRISPR spacer
gatgtagcacagccgctgccactgattttggt	Protospacer
.* .. **** ************** **** *

55. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 8, identity: 0.75

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
gtgtcgtatttacaggtgtcacggttttccct	Protospacer
*.*. * *************** *** ***

56. spacer 2.18|985951|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048109 (Klebsiella michiganensis strain BD177 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

ggcgtggtgtatatcggtcttgatgcgttgtc	CRISPR spacer
gccgtggtgtatatcggcctcgatgcactcag	Protospacer
* ***************.**.*****..*

57. spacer 2.19|986012|32|CP025745|CRISPRCasFinder,CRT matches to JX434031 (Pseudomonas phage JBD24, complete genome) position: , mismatch: 8, identity: 0.75

gtcacgaggtctgacgcggatgtgatg--agtta	CRISPR spacer
tcggcgaggtctgccgcgaatgtgatggcagt--	Protospacer
 . .********* ****.********  ***

58. spacer 3.5|1002515|32|CP025745|CRISPRCasFinder,CRT matches to NZ_CP024786 (Nostoc flagelliforme CCNUN1 plasmid pNFSY01, complete sequence) position: , mismatch: 8, identity: 0.75

gcggaataataaatggagtgccatttgtagca	CRISPR spacer
gttgaataataaatgcagtgccttttcttcta	Protospacer
*. ************ ****** *** *  .*

59. spacer 3.5|1002515|32|CP025745|CRISPRCasFinder,CRT matches to NZ_CP026687 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM5, complete sequence) position: , mismatch: 8, identity: 0.75

gcggaataataaatggagtgccatttgtagca	CRISPR spacer
gttgaataataaatgcagtgccttttcttcta	Protospacer
*. ************ ****** *** *  .*

60. spacer 3.15|1003127|32|CP025745|CRISPRCasFinder,CRT matches to NZ_CP049029 (Fluviibacterium aquatile strain SC52 plasmid pSC52_1, complete sequence) position: , mismatch: 8, identity: 0.75

ttgcgctgttctattggcggcaattctctgaa----	CRISPR spacer
ccgcgctgttcaattggcggcgat----tgaagcgc	Protospacer
..********* *********.**    ****

61. spacer 3.17|1003249|32|CP025745|CRISPRCasFinder,CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 8, identity: 0.75

acacgccagccaacaatattaattttgtcgtc	CRISPR spacer
aaaaatgggccatcaatattaattttgtcgtt	Protospacer
* * .. .**** ******************.

62. spacer 2.7|985280|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ccgcagaacgccgcatcgccgaactggacaaa	CRISPR spacer
ccgcagaacgccgcattgccggacctcattcc	Protospacer
****************.****.**.  *.

63. spacer 2.11|985524|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MN694334 (Marine virus AFVG_250M1054, complete genome) position: , mismatch: 9, identity: 0.719

tgctgaatctttgcgagtgggatgatggcact	CRISPR spacer
aggttcggctttgcgagttggctgatggcacc	Protospacer
 * *  . ********** ** *********.

64. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
tcgcgcgccgggatattgcgcagcgtgaacgc	Protospacer
 **.***************** ***. .* .

65. spacer 3.5|1002515|32|CP025745|CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gcggaataataaatggagtgccatttgtagca	CRISPR spacer
cgctaataataaatggaatgccatgtggggcg	Protospacer
    *************.****** ** .**.

66. spacer 3.5|1002515|32|CP025745|CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gcggaataataaatggagtgccatttgtagca	CRISPR spacer
cgctaataataaatggaatgccatgtggggcg	Protospacer
    *************.****** ** .**.

67. spacer 3.10|1002820|32|CP025745|CRISPRCasFinder,CRT matches to MN693670 (Marine virus AFVG_250M508, complete genome) position: , mismatch: 9, identity: 0.719

gacgcttcacctgcatcaaattctcctccagt	CRISPR spacer
tagccttcacctgcgtcaaattcttctaatct	Protospacer
 *  **********.*********.**    *

68. spacer 3.10|1002820|32|CP025745|CRISPRCasFinder,CRT matches to MN693662 (Marine virus AFVG_250M383, complete genome) position: , mismatch: 9, identity: 0.719

gacgcttcacctgcatcaaattctcctccagt	CRISPR spacer
tagccttcacctgcgtcaaattcttctaatct	Protospacer
 *  **********.*********.**    *

69. spacer 3.10|1002820|32|CP025745|CRISPRCasFinder,CRT matches to MN694314 (Marine virus AFVG_250M513, complete genome) position: , mismatch: 9, identity: 0.719

gacgcttcacctgcatcaaattctcctccagt	CRISPR spacer
tagccttcacctgcgtcaaattcttctaatct	Protospacer
 *  **********.*********.**    *

70. spacer 3.13|1003004|33|CP025745|CRISPRCasFinder,CRT matches to NC_014825 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence) position: , mismatch: 9, identity: 0.727

cgcacgcgggttgcgtaacggatatacgacagc	CRISPR spacer
gttcagcggtttgcgtaaaggatatacgaccac	Protospacer
  .  **** ******** *********** .*

71. spacer 3.17|1003249|32|CP025745|CRISPRCasFinder,CRT matches to NZ_CP017833 (Butyrivibrio hungatei strain MB2003 plasmid pNP6, complete sequence) position: , mismatch: 9, identity: 0.719

acacgccagccaacaatattaattttgtcgtc	CRISPR spacer
gcctgacagccaaaaacattaattttgtcagg	Protospacer
.* .* ******* **.************.

72. spacer 3.26|1003799|32|CP025745|CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaaacagaaaccggatatgagccatccat	CRISPR spacer
ggtcacccagaaaccggaaatgagccagccga	Protospacer
*   *  *********** ******** **.

73. spacer 3.26|1003799|32|CP025745|CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaaacagaaaccggatatgagccatccat	CRISPR spacer
ggtcacccagaaaccggaaatgagccagccga	Protospacer
*   *  *********** ******** **.

74. spacer 2.5|985158|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to MN694012 (Marine virus AFVG_250M887, complete genome) position: , mismatch: 10, identity: 0.688

cttgtcggcgttgctcacgtgactatttcgca	CRISPR spacer
ggtacttacgttgctcacgtaactattacgcc	Protospacer
  *... .************.****** ***

75. spacer 2.7|985280|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU140623 (Sinorhizobium sp. M14 plasmid pSinB, complete sequence) position: , mismatch: 10, identity: 0.688

ccgcagaacgccgcatcgccgaactggacaaa	CRISPR spacer
cgatcgaacagcgcatcgccgaactggaagcg	Protospacer
* .. ****. ***************** . .

76. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010682 (Phaeobacter piscinae strain P14 plasmid pP14_a, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
cggtgccccaggatattgcgccgcgcatgccg	Protospacer
  **** **.****************  .  .

77. spacer 2.13|985646|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010644 (Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtgcgccgggatattgcgccgcgccgagaa	CRISPR spacer
cggtgccccaggatattgcgccgcgcacgccg	Protospacer
  **** **.****************  .  .

78. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KX349325 (Cyanophage S-RIM12 isolate W1_24_0910, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

79. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KX349322 (Cyanophage S-RIM12 isolate Sn_31_0910, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

80. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KX349320 (Cyanophage S-RIM12 isolate RW_29_1109, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

81. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KX349310 (Cyanophage S-RIM12 isolate RW_01_0310, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

82. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KX349321 (Cyanophage S-RIM12 isolate Sn_07_0910, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

83. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KX349324 (Cyanophage S-RIM12 isolate W1_12_0610, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

84. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KX349314 (Cyanophage S-RIM12 isolate RW_07_1112, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

85. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KX349316 (Cyanophage S-RIM12 isolate RW_22_0110, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

86. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KJ019063 (Synechococcus phage ACG-2014c isolate Syn7803C97, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
cagaagaatttactggtgtcactggtgagttt	Protospacer
  * ********* ********** **  .

87. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KJ019027 (Synechococcus phage ACG-2014c isolate Syn7803C43, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
cagaagaatttactggtgtcactggtgagttt	Protospacer
  * ********* ********** **  .

88. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KX349315 (Cyanophage S-RIM12 isolate RW_14_0101, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

89. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KX349317 (Cyanophage S-RIM12 isolate RW_25_0210, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

90. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NC_019444 (Synechococcus phage S-MbCM6, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
cagaagaatttactggtgtcactggtgagttt	Protospacer
  * ********* ********** **  .

91. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KJ019128 (Synechococcus phage ACG-2014c isolate Syn7803US88, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

92. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to NC_015285 (Prochlorococcus phage Syn33, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

93. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KX349309 (Cyanophage S-RIM12 isolate Np_22_1112, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

94. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KX349319 (Cyanophage S-RIM12 isolate RW_28_1109, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

95. spacer 2.17|985890|32|CP025745|PILER-CR,CRISPRCasFinder,CRT matches to KX349318 (Cyanophage S-RIM12 isolate RW_27_0310, complete genome) position: , mismatch: 10, identity: 0.688

gcgcagaatttacaggtgtcactgttgtccgg	CRISPR spacer
ctgaagaatttactggtgtcactggtgagttt	Protospacer
 .* ********* ********** **  .

96. spacer 3.10|1002820|32|CP025745|CRISPRCasFinder,CRT matches to MN694051 (Marine virus AFVG_250M33, complete genome) position: , mismatch: 10, identity: 0.688

gacgcttcacctgcatcaaattctcctccagt	CRISPR spacer
tagccttcaccagcatcaaattcttctaagcg	Protospacer
 *  ******* ************.**  .

97. spacer 3.27|1003860|32|CP025745|CRISPRCasFinder,CRT matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

aggggcgttccgcagtcggcaagggctgaaaa	CRISPR spacer
tcgggcatcccgcagtcggcaagggtgcggcg	Protospacer
  ****.*.****************.  .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

663475 : 700381

Salmonella_phage(60.0%)

plate,tail,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUO50552.1\|663475_664477_-	Integrase	A0A218M4I3	Erwinia_phage	1.7e-191	98.5
AUO50553.1\|664476_665148_-	Repressor protein CI	A0A218M4J1	Erwinia_phage	1.0e-67	66.0
AUO50554.1\|665184_665448_+	Protein apl	A0A218M4I5	Erwinia_phage	1.3e-42	98.9
AUO50555.1\|665478_665988_+	Regulatory protein CII	A0A0M4QWN1	Salmonella_phage	4.3e-90	99.4
AUO50556.1\|665995_666223_+	Protein fil	A0A0M4RTI3	Salmonella_phage	2.1e-36	97.3
AUO50557.1\|666209_666410_+	Protein dhr	A0A0M5M7U3	Salmonella_phage	2.3e-31	100.0
AUO50558.1\|666479_666707_+	putative 8.8 kDa protein in GpA 5'region	A0A0M3UL87	Salmonella_phage	6.8e-32	100.0
AUO50559.1\|666706_666931_+	putative 8.5 kDa protein in gpA 5'region	Q6K1F5	Salmonella_virus	1.5e-34	98.6
AUO50560.1\|666952_667546_-	hypothetical protein	NA	NA	NA	NA
AUO50561.1\|667667_669791_+	Replication A protein	Q6K1F3	Salmonella_virus	0.0e+00	97.7
AUO50562.1\|669908_670349_+	SOS operon TUM protein	A0A218M4I0	Erwinia_phage	8.3e-66	92.0
AUO50563.1\|670431_671163_+	hypothetical protein	Q37850	Escherichia_phage	2.0e-125	92.6
AUO50564.1\|671270_671933_+	hypothetical protein	NA	NA	NA	NA
AUO50565.1\|672304_673309_-	hypothetical protein	NA	NA	NA	NA
AUO50566.1\|673386_674433_-\|portal	putative portal protein	S4TNX7	Salmonella_phage	4.4e-190	99.4
AUO50567.1\|674432_676202_-	Terminase, ATPase subunit	S4TT96	Salmonella_phage	0.0e+00	100.0
AUO50568.1\|676367_677222_+	Capsid assembly scaffolding protein	A0A0M3UL81	Salmonella_phage	9.9e-148	100.0
AUO50569.1\|677298_678366_+	Capsid protein	A0A0M4R4W2	Salmonella_phage	5.8e-198	99.4
AUO50570.1\|678369_679119_+	Terminase, endonuclease subunit	Q6K1I5	Salmonella_virus	5.8e-128	98.0
AUO50571.1\|679212_679719_+	Head completion/stabilization protein	S4TNY1	Salmonella_phage	5.0e-91	99.4
AUO50572.1\|679718_679922_+\|plate	Baseplate protein X	A0A0M3ULF4	Salmonella_phage	3.6e-32	100.0
AUO50573.1\|679925_680222_+	Holin	Q6K1I2	Salmonella_virus	5.8e-47	100.0
AUO50574.1\|680208_680706_+	Lysozyme	S4TUB1	Salmonella_phage	1.2e-92	99.4
AUO50575.1\|680702_681116_+	putative spanin, inner membrane subunit	S4TRW3	Salmonella_phage	6.4e-44	98.5
AUO50576.1\|681102_681261_+	putative spanin, outer lipoprotein subunit	S4TNY4	Salmonella_phage	7.6e-22	98.1
AUO50577.1\|681223_681691_+	Tail completion protein	S4TTA5	Salmonella_phage	1.1e-84	100.0
AUO50578.1\|681683_682133_+	Tail completion protein S	S4TP59	Salmonella_phage	4.2e-73	99.3
AUO50579.1\|682201_682843_+	Spike protein	Q6K1H6	Salmonella_virus	8.5e-112	97.2
AUO50580.1\|682839_683187_+\|plate	Baseplate protein W	A0A0M4RE59	Salmonella_phage	7.2e-57	98.3
AUO50581.1\|683193_684102_+\|plate	Baseplate protein J	A0A1J0I2M3	Salmonella_phage	3.1e-160	99.7
AUO50582.1\|684094_684625_+\|plate	Baseplate protein	Q6K1H3	Salmonella_virus	4.1e-104	100.0
AUO50583.1\|684635_686612_+\|tail	putative tail fiber protein	S4TP62	Salmonella_phage	0.0e+00	98.8
AUO50584.1\|686624_687173_+	Tail fiber assembly protein	S4TUB9	Salmonella_phage	9.9e-101	100.0
AUO50585.1\|687307_688486_+	Tail sheath protein	S4TRX2	Salmonella_phage	2.4e-221	99.0
AUO50586.1\|688501_689020_+\|tail	Major tail tube protein	S4TNZ0	Salmonella_phage	6.5e-94	100.0
AUO50587.1\|689082_689418_+	Tail assembly protein E'	S4TTB2	Salmonella_phage	1.4e-52	100.0
AUO50588.1\|689562_692007_+	putative tape measure protein	A0A0M3UL85	Salmonella_phage	0.0e+00	92.1
AUO50589.1\|692021_692507_+	hypothetical protein	Q6K1G5	Salmonella_virus	2.3e-85	99.4
AUO50590.1\|692503_693673_+\|plate	putative baseplate hub protein	A0A0M5M5V5	Salmonella_phage	5.6e-210	97.4
AUO50591.1\|693739_693958_+	Late control B protein	A0A2I8TV89	Erwinia_phage	9.5e-39	98.6
AUO50592.1\|694316_694823_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
AUO50593.1\|694946_696929_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	9.0e-35	33.7
AUO50594.1\|696943_698689_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
AUO50595.1\|698924_699140_-	30S ribosomal protein S21	NA	NA	NA	NA
AUO50596.1\|699367_700381_+	N(6)-L-threonylcarbamoyladenine synthase	A0A0R6PI74	Moraxella_phage	2.8e-109	59.5

DBSCAN-SWA_2

1706978 : 1716149

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUO51501.1\|1706978_1707926_+	Spermidine/putrescine import ATP-binding protein PotA	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8
AUO51502.1\|1707909_1708641_+	Glycine betaine uptake system permease protein	NA	NA	NA	NA
AUO51503.1\|1708621_1708729_-	UPF0387 membrane protein YohO	NA	NA	NA	NA
AUO51504.1\|1708788_1709520_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AUO51505.1\|1709742_1711428_+	Histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
AUO51506.1\|1711424_1712144_+	Chemotaxis response regulator protein-glutamate methylesterase of group 1 operon	NA	NA	NA	NA
AUO51507.1\|1712190_1712658_+	uncharacterized protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AUO51508.1\|1712714_1713245_-	putative lipoprotein YehR	NA	NA	NA	NA
AUO51509.1\|1713416_1713875_-	putative lipoprotein YehR	Q9EYF5	Enterobacteria_phage	2.4e-52	71.9
AUO51510.1\|1714115_1716149_-\|tRNA	Methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_3

1889955 : 1897223

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUO51670.1\|1889955_1890375_+	Protein UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AUO51671.1\|1890377_1891646_+	Protein UmuC	I6RSM4	Salmonella_phage	3.5e-226	91.7
AUO51672.1\|1892100_1892313_+	Cold shock-like protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AUO51673.1\|1892771_1893983_-	Outer membrane protein S1	Q1MVN1	Enterobacteria_phage	4.4e-109	56.2
AUO51674.1\|1894632_1894944_+	Inner membrane protein YedR	NA	NA	NA	NA
AUO51675.1\|1895023_1895719_+	uncharacterized protein	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
AUO51676.1\|1895792_1897223_+	DNA (cytosine-5-)-methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_4

2000489 : 2007922

Salmonella_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUO51785.1\|2000489_2000720_-	DNA-directed DNA polymerase	H9C187	Pectobacterium_phage	2.9e-14	60.3
AUO51786.1\|2000857_2001232_+	Protein YobA	NA	NA	NA	NA
AUO51787.1\|2001232_2002108_+	Inner membrane protein YebZ	NA	NA	NA	NA
AUO51788.1\|2002124_2002478_+	uncharacterized protein	NA	NA	NA	NA
AUO51789.1\|2002860_2003940_-	Integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.3e-99	52.2
AUO51790.1\|2003936_2005043_-	Exodeoxyribonuclease	Q9QF34	Lambdoid_phage	1.4e-53	65.0
AUO51791.1\|2005073_2005304_+	hypothetical protein	Q8HA86	Salmonella_phage	1.4e-27	92.1
AUO51792.1\|2005357_2005891_+	Protein gp55	A0A291LBG9	Klebsiella_phage	5.4e-11	43.0
AUO51793.1\|2006147_2006315_-	hypothetical protein	NA	NA	NA	NA
AUO51794.1\|2006622_2006886_+	hypothetical protein	Q9EYD0	Enterobacteria_phage	2.0e-19	59.8
AUO51795.1\|2007040_2007922_+	Tail fiber assembly protein like protein from lambdoid prophage Fels-1	A0A0M4RTP2	Salmonella_phage	3.7e-65	75.4

DBSCAN-SWA_5

2809747 : 2876127

Salmonella_phage(47.06%)

head,capsid,tail,integrase,protease,terminase

attL 2838654:2838669|attR 2879494:2879509

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUO52580.1\|2809747_2811508_+\|protease	Putative Lon protease like protein	NA	NA	NA	NA
AUO52581.1\|2811576_2812095_+	3-hydroxyacyl-[acyl-carrier-protein] dehydratase	NA	NA	NA	NA
AUO52582.1\|2812617_2813181_-	putative lipoprotein YmbA	NA	NA	NA	NA
AUO52583.1\|2813177_2814818_-	Paraquat-inducible protein	NA	NA	NA	NA
AUO52584.1\|2814822_2816076_-	Paraquat-inducible protein	NA	NA	NA	NA
AUO52585.1\|2816090_2817998_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
AUO52586.1\|2818010_2820119_-	23S rRNA (guanine(2445)-N(2))-methyltransferase	NA	NA	NA	NA
AUO52587.1\|2820217_2821327_+	uncharacterized protein	NA	NA	NA	NA
AUO52588.1\|2821323_2821866_-	Cell division protein ZapC	NA	NA	NA	NA
AUO52589.1\|2822031_2823042_-	Dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
AUO52590.1\|2823249_2825862_-	Membrane alanyl aminopeptidase	A0A0P0IY26	Acinetobacter_phage	3.7e-20	22.8
AUO52591.1\|2826225_2826495_+	Virulence protein MsgA	S4TNM0	Salmonella_phage	3.9e-42	98.9
AUO52592.1\|2827489_2827771_+	hypothetical protein	NA	NA	NA	NA
AUO52593.1\|2828362_2829829_+	hypothetical protein	Q9MBM1	Phage_Gifsy-1	1.2e-254	98.6
AUO52594.1\|2830658_2831240_-	Tail fiber assembly protein like protein from lambdoid prophage Qin	A0A0M4RTP2	Salmonella_phage	3.3e-94	88.9
AUO52595.1\|2831239_2833735_-	Tail fiber protein	E5G6P0	Salmonella_phage	7.3e-159	76.1
AUO52596.1\|2833788_2834031_-	hypothetical protein	NA	NA	NA	NA
AUO52597.1\|2834069_2837432_-	Tip attachment protein	K7PKJ2	Enterobacteria_phage	0.0e+00	79.5
AUO52598.1\|2837493_2838000_-	Tail tip assembly protein	A5LH42	Enterobacteria_phage	5.4e-69	79.2
AUO52599.1\|2838038_2838776_-	Tail tip assembly protein K	K7PLW1	Enterobacteria_phage	9.8e-128	84.2
2838654:2838669	attL	NA	NA	NA	NA
AUO52600.1\|2838782_2839481_-	Tail tip protein	A0A1B5FP81	Escherichia_phage	1.6e-103	75.9
AUO52601.1\|2839490_2839820_-	Tail tip protein	A5LH39	Enterobacteria_phage	7.3e-43	71.3
AUO52602.1\|2839822_2842918_-	Tape measure protein	A0A291AWX1	Escherichia_phage	4.8e-277	61.7
AUO52603.1\|2842889_2843204_-	Tail assembly protein GT	A5LH37	Enterobacteria_phage	2.3e-30	62.9
AUO52604.1\|2843224_2843620_-	hypothetical protein	A5LH36	Enterobacteria_phage	2.3e-30	56.5
AUO52605.1\|2843670_2844414_-	Tail tube protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
AUO52606.1\|2844424_2844826_-	Tail tube terminator protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
AUO52607.1\|2844822_2845401_-	Tail completion protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
AUO52608.1\|2845387_2845765_-\|tail	Head-tail joining protein	A0A0K2FJB7	Enterobacteria_phage	1.5e-28	55.6
AUO52609.1\|2845775_2846141_-	putative 13.5 kDa protein in GP7-GP8 intergenic region	NA	NA	NA	NA
AUO52610.1\|2846198_2847227_-\|capsid	Major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
AUO52611.1\|2847281_2847629_-	Head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
AUO52612.1\|2847641_2849138_-\|tail	Head-tail preconnector protein GP5	A0A0K2FI53	Enterobacteria_phage	1.1e-96	52.2
AUO52613.1\|2849127_2850747_-	Portal protein	K7P6U7	Enterobacteria_phage	9.8e-189	62.8
AUO52614.1\|2850704_2850908_-\|head,tail	Lambda prophage-derived head-to-tail joining protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
AUO52615.1\|2850891_2852823_-\|terminase	terminase, large subunit gp2	A0A0K2FJ14	Enterobacteria_phage	1.3e-259	65.9
AUO52616.1\|2852794_2853340_-	Terminase, small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
AUO52617.1\|2853625_2854027_+	Inhibitor of g-type lysozyme	NA	NA	NA	NA
AUO52618.1\|2854283_2854787_-	hypothetical protein	NA	NA	NA	NA
AUO52619.1\|2855115_2855586_-	Putative Rz endopeptidase from lambdoid prophage DLP12	A0A0M4RD57	Salmonella_phage	6.5e-69	90.8
AUO52620.1\|2855582_2856035_-	Lysozyme	A0A0M4R365	Salmonella_phage	4.6e-80	98.7
AUO52621.1\|2856018_2856354_-	hypothetical protein	A0A0M3ULK9	Salmonella_phage	4.1e-57	100.0
AUO52622.1\|2856836_2856986_+	hypothetical protein	Q9MBM0	Phage_Gifsy-2	4.6e-21	100.0
AUO52623.1\|2857316_2857454_-	hypothetical protein	NA	NA	NA	NA
AUO52624.1\|2857670_2858120_+	hypothetical protein	NA	NA	NA	NA
AUO52625.1\|2858255_2858381_-	hypothetical protein	NA	NA	NA	NA
AUO52626.1\|2858779_2859577_-	hypothetical protein	A0A0M4S661	Salmonella_phage	4.0e-151	99.6
AUO52627.1\|2859709_2860321_-	Protein ninG	A0A0M4RU10	Salmonella_phage	4.2e-92	99.5
AUO52628.1\|2860323_2860530_-	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
AUO52629.1\|2860529_2861132_-	hypothetical protein	S4TTI0	Salmonella_phage	2.8e-109	99.0
AUO52630.1\|2861531_2861765_-	DNA-damage-inducible protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
AUO52631.1\|2861905_2862013_-	hypothetical protein	NA	NA	NA	NA
AUO52632.1\|2862012_2862339_-	hypothetical protein	NA	NA	NA	NA
AUO52633.1\|2862481_2863699_-	hypothetical protein	J9Q803	Salmonella_phage	3.1e-118	53.3
AUO52634.1\|2864009_2864255_-	hypothetical protein	Q5G8U9	Enterobacteria_phage	3.0e-33	88.9
AUO52635.1\|2864254_2864575_-	hypothetical protein	H6WRY0	Salmonella_phage	6.7e-25	65.5
AUO52636.1\|2864571_2864919_-	hypothetical protein	H6WRX9	Salmonella_phage	4.5e-59	100.0
AUO52637.1\|2864929_2865679_-	DNA replication protein DnaC	H6WRX8	Salmonella_phage	7.3e-139	99.2
AUO52638.1\|2865681_2866659_-	Replication protein 15	H6WRX7	Salmonella_phage	1.9e-163	100.0
AUO52639.1\|2866749_2867070_-	hypothetical protein	A0A0M4RU01	Salmonella_phage	1.3e-52	100.0
AUO52640.1\|2867089_2867326_-	hypothetical protein	A0A0M4QX15	Salmonella_phage	9.0e-27	73.1
AUO52641.1\|2867535_2867826_+	hypothetical protein	K7PM35	Enterobacteria_phage	1.7e-30	69.8
AUO52642.1\|2867931_2868873_+	hypothetical protein	NA	NA	NA	NA
AUO52643.1\|2868899_2869106_-	hypothetical protein	K7P7I0	Enterobacteria_phage	4.3e-17	69.1
AUO52644.1\|2869393_2869510_+	hypothetical protein	NA	NA	NA	NA
AUO52645.1\|2869502_2869673_+	hypothetical protein	K7PGY4	Enterobacteria_phage	9.7e-07	49.0
AUO52646.1\|2869757_2870045_+	hypothetical protein	H6WRX2	Salmonella_phage	3.0e-48	100.0
AUO52647.1\|2870171_2873099_+	Exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	99.8
AUO52648.1\|2873109_2874219_+	hypothetical protein	H6WRX0	Salmonella_phage	3.5e-206	99.7
AUO52649.1\|2874261_2874501_+	hypothetical protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AUO52650.1\|2874541_2874790_+	hypothetical protein	S4TND0	Salmonella_phage	4.7e-42	100.0
AUO52651.1\|2874834_2876127_+\|integrase	Putative lambdoid prophage Qin defective integrase	S4TSP2	Salmonella_phage	3.4e-253	100.0
2879494:2879509	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4354775 : 4375224

Burkholderia_phage(42.11%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUO53975.1\|4354775_4355123_-	DNA-binding protein RdgB	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
AUO53976.1\|4355699_4355987_+	hypothetical protein	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
AUO53977.1\|4356022_4356595_+	hypothetical protein	Q5ZQZ1	Pseudomonas_phage	5.2e-60	59.9
AUO53978.1\|4356607_4356922_+	hypothetical protein	Q6QIC4	Burkholderia_phage	1.1e-19	48.2
AUO53979.1\|4357082_4357538_+	hypothetical protein	NA	NA	NA	NA
AUO53980.1\|4357534_4357732_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
AUO53981.1\|4357721_4359149_+	Tail sheath protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
AUO53982.1\|4359148_4359673_+	hypothetical protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
AUO53983.1\|4359724_4360042_+	hypothetical protein	NA	NA	NA	NA
AUO53984.1\|4360226_4362581_+	putative tape measure protein	A4JWL0	Burkholderia_virus	4.0e-66	30.9
AUO53985.1\|4362580_4363534_+	hypothetical protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
AUO53986.1\|4363533_4363743_+	hypothetical protein	A4JWL2	Burkholderia_virus	2.8e-16	58.8
AUO53987.1\|4363730_4364774_+	hypothetical protein	A4JWL3	Burkholderia_virus	6.5e-77	45.9
AUO53988.1\|4364783_4365506_+	hypothetical protein	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
AUO53989.1\|4366192_4367122_+	Dolichyl-phosphate beta-D-mannosyltransferase	S5FKN0	Shigella_phage	7.9e-151	84.1
AUO53990.1\|4367121_4368669_+	hypothetical protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
AUO53991.1\|4368832_4369192_+	hypothetical protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
AUO53992.1\|4369182_4370298_+	hypothetical protein	Q6QI99	Burkholderia_phage	3.1e-101	52.2
AUO53993.1\|4370290_4370923_+\|plate	Baseplate protein	Q6QI98	Burkholderia_phage	1.1e-23	56.4
AUO53994.1\|4370925_4372695_+\|tail	putative tail fiber protein	A0A0M3ULH6	Salmonella_phage	3.2e-52	40.5
AUO53995.1\|4372699_4373305_+	hypothetical protein	NA	NA	NA	NA
AUO53996.1\|4373301_4373757_+	hypothetical protein	NA	NA	NA	NA
AUO53997.1\|4374495_4375224_+	hypothetical protein	A0A077SLK3	Escherichia_phage	7.3e-35	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025745

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection