CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	3 crisprs	cas8b1,cas7b,cas5,cas3,DEDDh,c2c4_V-U1,cas14j	1	14	3
CP013846	Clostridium botulinum strain A634 plasmid pRSJ19_1, complete sequence	0 crisprs	NA	0	0	0
CP013845	Clostridium botulinum strain A634 chromosome, complete genome	0 crisprs	DEDDh,csa3,DinG,WYL,cas3	0	2	8

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP013844_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP013844_1

33100-33654

TypeI-B

Consensus_repeat	Method
GTCATCCAACAATATAAGATATTTTTAAAT	PILER-CR
ATCCAACAATATAAGATATTTTTAAAT	CRISPRCasFinder
ATNNNANAANATAAGATNTTTTTAAAT	CRT
ATCCAACAATATAAGATATTTTTAAAT	CRISPRCasFinder

8 spacers

cas5,cas7b,cas8b1,cas3

The CRISPR arrays of CP013844_1

>merge|CP013844|1|33100-33654|PILER-CR,CRISPRCasFinder,CRT,CRISPRCasFinder
GTCATCCAACAATATAAGATATTTTTAAATAATTACTCAAGGAAAAATACTGCTTTAGAAAACTTCGTCATCCAACAATATAAGATATTTTTAAATCGTCTAATTGGATCAAAAACTCTATTAACTTTTTGAGTTATCCAACAATATAAGATATTTTTAAATTAATTATTTGTTGCAATCTATATATAATAAATATGAGTTATCCAACAATATAAGATATTTTTAAATATGAATGACAATCGCTATACATGTAGAACAATAGAGTTATCAAATAATATAAGATGTTTTTAAACTCGTATAGTTTTTCTGTTAAAGGAATTTTTCTTTTGTTATGAATATAGCATATGATGTTTTTAAATTACGATGCTGACGCCTCTGAAATTGAAATAGTTACAGTTATTAAATAATATAAGATATTTTTAAATTAGAATATGGAATAAGACATTCTTTAAAGATGATGAGTTATAATAAAACATTATATGTTTTTAAATTTTAATAGAATAATAAGTTTTCAAGCCTTTAAGAGTTATAATACAACATTGTGTGTTTTTAAAT

>CP013844|1|1|33100-33327|PILER-CR
GTCATCCAACAATATAAGATATTTTTAAAT	AATTACTCAAGGAAAAATACTGCTTTAGAAAACTTC
GTCATCCAACAATATAAGATATTTTTAAAT	CGTCTAATTGGATCAAAAACTCTATTAACTTTTTGA
GTTATCCAACAATATAAGATATTTTTAAAT	TAATTATTTGTTGCAATCTATATATAATAAATATGA
GTTATCCAACAATATAAGATATTTTTAAAT

>CP013844|1|1|33103-33393|CRISPRCasFinder
ATCCAACAATATAAGATATTTTTAAAT	AATTACTCAAGGAAAAATACTGCTTTAGAAAACTTCGTC
ATCCAACAATATAAGATATTTTTAAAT	CGTCTAATTGGATCAAAAACTCTATTAACTTTTTGAGTT
ATCCAACAATATAAGATATTTTTAAAT	TAATTATTTGTTGCAATCTATATATAATAAATATGAGTT
ATCCAACAATATAAGATATTTTTAAAT	ATGAATGACAATCGCTATACATGTAGAACAATAGAGTT
ATCAAATAATATAAGATGTTTTTAAACTCGTATAGTTTTTCTGTTAAAGGAATTTTTCTTTTGTTATGAATATAGCATATGATGTTTTTAAATTACGATGCTGACGCCTCTGAAATTGAAATAGTTACAGTTATTAAATAATATAAGATATTTTTAAAT	TAGAATATGGAATAAGACATTCTTTAAAGATGATGAGTT


>CP013844|1|1|33103-33654|CRT
ATCCAACAATATAAGATATTTTTAAAT	AATTACTCAAGGAAAAATACTGCTTTAGAAAACTTCGTC
ATCCAACAATATAAGATATTTTTAAAT	CGTCTAATTGGATCAAAAACTCTATTAACTTTTTGAGTT
ATCCAACAATATAAGATATTTTTAAAT	TAATTATTTGTTGCAATCTATATATAATAAATATGAGTT
ATCCAACAATATAAGATATTTTTAAAT	ATGAATGACAATCGCTATACATGTAGAACAATAGAGTT
ATCAAATAATATAAGATGTTTTTAAAC	TCGTATAGTTTTTCTGTTAAAGGAATTTTTCTTTTGTTA
TGAATATAGCATATGATGTTTTTAAAT	TACGATGCTGACGCCTCTGAAATTGAAATAGTTACAGTT
ATTAAATAATATAAGATATTTTTAAAT	TAGAATATGGAATAAGACATTCTTTAAAGATGATGAGTT
ATAATAAAACATTATATGTTTTTAAAT	TTTAATAGAATAATAAGTTTTCAAGCCTTTAAGAGTT
ATAATACAACATTGTGTGTTTTTAAAT

>CP013844|1|2|33498-33590|CRISPRCasFinder
	AATTACTCAAGGAAAAATACTGCTTTAGAAAACTTCGTC
ATCCAACAATATAAGATATTTTTAAAT	CGTCTAATTGGATCAAAAACTCTATTAACTTTTTGAGTT
ATCCAACAATATAAGATATTTTTAAAT	TAATTATTTGTTGCAATCTATATATAATAAATATGAGTT
ATCCAACAATATAAGATATTTTTAAAT	ATGAATGACAATCGCTATACATGTAGAACAATAGAGTT
ATCAAATAATATAAGATGTTTTTAAACTCGTATAGTTTTTCTGTTAAAGGAATTTTTCTTTTGTTATGAATATAGCATATGATGTTTTTAAATTACGATGCTGACGCCTCTGAAATTGAAATAGTTACAGTTATTAAATAATATAAGATATTTTTAAAT	TAGAATATGGAATAAGACATTCTTTAAAGATGATGAGTT
ATAATAAAACATTATATGTTTTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP013844.1\|AUN01444.1\|32186_32936_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
CP013844.1\|AUN01437.1\|25537_26491_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378235
CP013844.1\|AUN01436.1\|25212_25407_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01449.1\|38714_40184_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01452.1\|42042_43329_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222893
CP013844.1\|AUN01445.1\|33770_36236_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|273707
CP013844.1\|AUN01447.1\|37585_38086_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|372510
CP013844.1\|AUN01440.1\|28293_28530_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01441.1\|28720_29467_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273848
CP013844.1\|AUN01448.1\|38132_38585_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01439.1\|27658_28111_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01438.1\|26663_27455_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01454.1\|45200_45554_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01443.1\|31255_32185_+\|hypothetical-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
CP013844.1\|AUN01442.1\|29480_31253_+\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	unknown
CP013844.1\|AUN01435.1\|24753_25029_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01450.1\|40167_41229_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01446.1\|36972_37560_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367091
CP013844.1\|AUN01453.1\|43708_44893_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370826
CP013844.1\|AUN01451.1\|41616_41898_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP013844.1\|AUN01444.1\|32186_32936_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	8.29076e-27
CP013844.1\|AUN01437.1\|25537_26491_+\|hypothetical-protein	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	4.16898e-07
CP013844.1\|AUN01443.1\|31255_32185_+\|hypothetical-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.65004e-17
CP013844.1\|AUN01452.1\|42042_43329_+\|hypothetical-protein	gnl\|CDD\|222893	PHA02587, 30, DNA ligase; Provisional.	1.84323e-49
CP013844.1\|AUN01445.1\|33770_36236_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	6.31332e-26
CP013844.1\|AUN01446.1\|36972_37560_+\|hypothetical-protein	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	5.85927e-26
CP013844.1\|AUN01441.1\|28720_29467_+\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	3.46554e-07
CP013844.1\|AUN01447.1\|37585_38086_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|372510	pfam13176, TPR_7, Tetratricopeptide repeat.	0.00142647
CP013844.1\|AUN01453.1\|43708_44893_+\|hypothetical-protein	gnl\|CDD\|370826	pfam10134, RPA, Replication initiator protein A. Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.	9.56918e-06

>CP013844.1|AUN01444.1|32186_32936_+|type-I-B-CRISPR-associated-protein-Cas5
MECLKFDLGGKTAFFKKPEINDVNFTFSNIHKIATLGMIGAIIGLNGRQQSKENGKIKFYETLKSIELSIVPFSPYFSKTYTIFNNATGFANKSASKHGATQNIKQQWLTNPKWTIYLKQGALDNTIWGKIKKYFLQGNYVYEPYLGGRPHIANITNVNLIDIDNIKNKEDIYKVDSLVKYNEIIDIDSQVYENCEDEYSYCLKEYTPIKLDDRGLYITEKMLHTNYEIYEVKNTNNFYKYNNNILYFI
>CP013844.1|AUN01443.1|31255_32185_+|hypothetical-protein
MKMNNRVYGVTGIGVRNNNFNAGFDKTPKTLSNGTIFGAHQALKYPNRVFWDKLGEKVFYLKSYTEDGNVKKINERFQELFQMEDKDIQAVKSNLFKCVDVMNHGAAYTGNVSVDIRGAVQINNGDNKYELTTIDIFNILSPFGNKNSEKDTKQSSLGDTVVTDEAHYVYSINVNPFEYDKYIGTIEGFEGYTREAYDLFKEASLIAVSDYNSASKTGCQNEFTIFVELKDEMQGKFNLNELGQYIKVYNSENSNKRIYDLTILTEILNSGNISKDIKSIEIYYNPYTLELLENIENAKRFNIITREEI
>CP013844.1|AUN01442.1|29480_31253_+|hypothetical-protein
MFKELIDEIGYNNILEYCENANLQNGIYIKINKDGNIEDKNIIEIENDKKDIENIELINWFKQRNCYSNYIDSNKAIVQRGKGVKTPKIVTSCNCYSVFFNVATILKNSKKMEMSLDKYCKNMITEYFDALINNIMNDKNGLSSIFKSNNIKSYMKKNKTTITKMIKKFFMNEYLLAQDKHRKKCINETKEILIQNIFVLINKLSNVKNIDKKKIKIFIDSEVDDYKKEYLLYLKPRIFLNNENNLILDDKIYGLSSELFTINSKKPLLKTNANLTDIPCLISIKGAIKYRNLIVYLKGNLSKTRELGYDLIFDKDGINVFDIIPFNKKDKLELKPLIIKDYLNKSFDTVEINNKKSLENSFNYFLDGNLYSNKINDNSKAKSFVVMYRDIISNYVYKDIDRDFLYALPKILNQLLNANLNPKKNVFDIMKCFNFRLSLLEYFKNNEKGEVIMKLNNDLKERLRDINTFTINSREEFIYICGQLGYYLNSRSKASPENKKMMLVNTYINCNNIELLKRKLQQDISKYSYDIQLNNDRFKKIIEQISLFKFDNNSISSSEKDYLLAGLFGNNLVYYEKKNNNKNNNNMEGK
>CP013844.1|AUN01441.1|28720_29467_+|hypothetical-protein
MLNKNYELRIKIYLLRDIPLEDANEILSKAIDYTMLLNKNLRPIHTNKGFKHYSFSTPYPVESDRVYKKDRIYSFMIRDYSKQKIKDFQSVFSKLRLNEFVVLTTEIKEYHKKRISHIYTITPTVLTLLEEEVPDKLKTIKTKQKCWVKGCNHLLLIDRIENNLIKKYKDLTQKDIVVNNDIIESVEITNKVPIKINYKDSAIIGNKFKITFAQNELTQEIANLSVVEGILEKNSSLGCGFVKPAFVE
>CP013844.1|AUN01440.1|28293_28530_+|hypothetical-protein
MTNSLKNTIDTDKNREAVNRAKKAIKQYELELKSLDIQMTKNNIILDKYINSDEYKDNLKEIQELEDRERELDKESKK
>CP013844.1|AUN01439.1|27658_28111_+|hypothetical-protein
MEKIKFIYIDVEEETKEIKQLLDKGLIKYFYGKDSNEPDFIFLSENEDIIKSSITSEYRISNILRQLIIMFDGSNINIRNLWGDEINLDYKTLLNLMKENLNSYLSEDTQELIYQAEIPADKLTNIINQNGKEQLQMQIEDLLMESKKVI
>CP013844.1|AUN01438.1|26663_27455_+|hypothetical-protein
MEIKNIQQLIELKKLKWSNPYTQRDFEVNSIDEFKYLLENYLNKFAFGVTYNTFKYTIFKEDDYIYIRNNDTYKFKNGYTGNITEEYTLKENSIDNIIDFIISSPDKNDKRRTRIKFIYIDVDDITDEMKQLLDKGLMKYFYGKNSCEPEFIYLAENEHIIKNTLTAEYCILDFASKLSEIFDCTDMTVRNIWNDEISFYHGRIEDLISDNLYGYIPESKQKEIFNTENPSNKLRTIFNEIGREQLRIQIKDLLKEINRAEFI
>CP013844.1|AUN01437.1|25537_26491_+|hypothetical-protein
MIKNMKNKEFLEKLNMKEMISTQINSWELMLKKKGLKDKTIERKLNNLIYFYMHLTALRKDKERIKIDNISNIAFEYVRDGYFSEDNIDNEGCYGYRRNIYCNLREGFNFIYQGYFKNKIEVINDLIEEQKEVLEDVSKNKWFNVVGIKDDRETIQTKIIEELGLKVYFDKENNPYVLSHETAELIGKKHKDVTKAIRLILDRFTRAKKIALVENVDISMIEDHYTYNTNNGGTKDVITYRLSKDLVINYILGMSGDKYFDFKIKYQSAFNYIEREYKKLLEEHSTLKDSFLKMYNNIRKRNRDLLIKEHNKKAKSK
>CP013844.1|AUN01436.1|25212_25407_+|hypothetical-protein
MNKTLKLKQFNNKIYLYNRKNPVTVGKEIKIIFHDAIVFSGQVTKENISEIQKMITYSDNYIIN
>CP013844.1|AUN01435.1|24753_25029_+|hypothetical-protein
MEILSHNSDGKKDIKGIERCKKVYNSTISNKSYIKVNVLGKTWRVKKEAQNKWLKVAKVEDLIRDNLNDVLGALSVGITGVLIYFIMAMYY
>CP013844.1|AUN01445.1|33770_36236_+|CRISPR-associated-helicase/endonuclease-Cas3
MDKYLSRPNEDLIIHLNLTINNYNNYCKTNNLDKIIKNIISKLLQENNIKNEEASKQVYEMFINSIWLHDIGKINPYFQAYISNPNFKDYEFNNENKKHSILSSLIYLNIYYGKIKDVIYSKNRRENKNIKILLYDLLISFAYCISKHHTSLKDFDSIIFFNKLDNTVIQNNLLINNLNIDKEFIKKLKQINYKDVVYTNEFTKYILIKLCYSSIVTCDFLAVYNFYNKKQFHTNAINKNKLKQFNDKYNNLDIIKSIRNYPYNKDKLGKLNKMRTEMFLESESNLMKCISDNIFYLEAPTGSGKSNTSLNLALNILNNSKQFNKIISVNPYNAISEQTYNNTRNSLLIDDKDVVLINSQTEIIESDIEDETHYSKDFLDNQLLNYPVSIISHVKLFKALFSNNRIDNLMLFNIINSVIIIDEVQSYKNNLWIHIINSFKQFSDLLNFKIIIMSATLPKMDCLLEDKTYISNLIHNKNYYYNYFKNRVSLNFNLLNIKQFNKNILCDKINIEIKNNKRILVEFIKNKTANEIYNYYKQKFKSADYLVFNITSNCNSLYKQNVLKLINEKDDKNNFVNQKILVICTQTIEAGVDIDMDVGFKDISLLDSDEQFCGRINRNFKREGVVYFFHLDKITDVYKDDYRCERNLLNEQWQHLLITKQFNKFYELNYKRLLEEEKLNKDYYTYKNNLRTIQFEEIDKTMTLIDEQNCNLYLYCKLKLKDITIDSKNMFNKYIELKKDCNMDYSKKMIKLSKLKKWLGLFTYKFKVFNKNKPSIYNDYIDNYYILENPNEYIDIKEGFINEFSLFNMNKYIEDCNGLFL
>CP013844.1|AUN01446.1|36972_37560_+|hypothetical-protein
MLNNKIFMKRRGDIVYVDLGNPKGTNQGGKRPCIIVPNNKCTEHSTSIQIIPITSKLNKKRLPTHIFIKKDELNGLNEDSLILVEQTDLISTSQILSVVGRASDEIMRKVNAKLKIQFDLDKPDVNRIKAKIKTLKEMESYILKHNENSEELLNILKFQVSDFRDYCQEYNLNCSQYYVSKFNIINRYFQRNIAA
>CP013844.1|AUN01447.1|37585_38086_+|tetratricopeptide-repeat-protein
MVYTLLKMKIREMYLEKKYEECNKKLTDLYRELIRDNQITLAEQNQLIWYYYFYKSNIFKNQNNLKDSLSFCLKSFRYITFKDKFNTEYKGTLFLLANIYKELNKKQKAIKTYEYLLRITKDKQYEMIFENINNLRQNSNVITFTNKQNKKYDSNKENNFKFCCYF
>CP013844.1|AUN01448.1|38132_38585_+|hypothetical-protein
MKNKIRFIHDNQIKTGYIKTNLNKFKKEFILVEKGKNRYRIPIENLITTENELEINKKLLKHQIDNYISKYNLTIQWVNDTLKVSSILDEWFIEPSKNNLLILQHINKKNKDAKGKFHKQGIFYNYFSALRHIAEHDKTKLGIDFSNKSA
>CP013844.1|AUN01449.1|38714_40184_+|hypothetical-protein
MIENKDYNYDRLIREITGCLSLKQFLMKKPFVIKELENKVNEERINNLFNQDIQIDMLDTRELYLITETFYKMLLDEEFISKLNEFQQQLQKDLNPELYFTEDEIRQYKNSVLPVEEEQDFKTVVFKNVKFMKEGIYSTVDDFNYILDLREKGILFYNINCQRETEKYEWRGTYVEKAKVFSKSIKEISESMYQDKYIPTYIAINVPSNGEEDFHVIDKENGLYDIIIKINKNTSLNLIDGNHRTTGGSLARNMCRRKGKEFLLNMGIQIMNLDPSSARQYIFQESKKNPLDETLTKAMEKTIENEIADYMNKGESPLAGKLGRELKDVKTLNKLTPLYVFAEGLKHFELDELDLIRKNKVKRFLKDFFNCILSFHKDKRRDRELSIEDMLKNKKLKEKKSEEEGYELNMNMFRGYLYIAAKLFNDPNWIEKIDTILKKIDYKKGGALEDMHLFKNEMSKTNIKKLEEYLENILSEVEESGENENVRKN
>CP013844.1|AUN01450.1|40167_41229_+|hypothetical-protein
MSEKIRDFTSLNKLYFRELDERKKEYINFLKNEQDLQDITVDNYTNQIYKIRAFEEIIDRDRTIEYFTLDEISKLLENMTFSSESSAIAYKNRILDYLKFCTEHYGIQKDIGLLNTISQKEFIQGLVNKRLKYLKYVTEGTLYEAVQDLVNPQDRLMALLIYEGVKGTNHADLINIKKEQYDKENKILEYIEQDTGKTKQLRCNEFLSDEIEKTILSDTYYFKNGKGTGRHDMSDIVNSPYLVAPTAQLNARMNNYSGQQVYGQTIQSRILKIFKHFLDINGQHITVQSLYHSGIVNRMVKLTEEKYAGQKLKKVDFVKYIEQNEKLKLQAGYRLYDIYENLYNLFKNDIISF
>CP013844.1|AUN01451.1|41616_41898_+|hypothetical-protein
MEVKLMNYLKGNKGYGITISEIGGDEKFLEDMCYKHNTNLKRIEILGKNEFLEMDKYIIKMENIVNIEEDISNISIFTESETENKEIIIENWD
>CP013844.1|AUN01452.1|42042_43329_+|hypothetical-protein
MKNNLKECLEILKSIGNDSSRIAKETILKENKDNQLLKDILFFLYNPYIVTGISTKKLNKKVKLEVDNKLNTIIDVMDFLKTNNTGTDEHIKVIQNWINNQDLQYQDILKQLVTKSLKIGITSKTINKIHKNFIPEFNVMLAEKYHENINRVKGKFIITTKLDGNRMVLVKENGAIKTFSRQGQLIEGLIDIIEDAKQLQDNMVYDGEILLKNDKNLDSKQLFQETQKIIRKKDIKKTNLIFNIFDMMPLDEFKQGVSINDTLTRKNQLHDILESLETNWVKEVPMLYVGEDINKIDELLNIAVQNGEEGIMINLVDSKYQCKRTKDLLKVKIMNSSDCKIIGYEEGTGRNEGVLGAFIIDYKGHNVKVGSGYTDEDRKMFWENKDAFIEKIIEVQYFEETKNQNGGISLRFPVYKCIRNDKIEPSYF
>CP013844.1|AUN01453.1|43708_44893_+|hypothetical-protein
MDKKEEEQEVETISLKSNQSINESNLMVIPFISMKKTKVKVLERYWISNGVRRGIKVVGSGEHGCPTIAELDVLLALFRILIKNVGFKYEYNRTTGKVSLPKTIHFTYQELSKELGYKTYGGALKKKLENSVKCLNEATIYSDLGLRDVEAGDYIYDFEGEDSFRILEDYKSFSYTKRKKKGEKIGDAKQVKSMQSVTISDFFFKNICNNYFKIYNYNQYLMLTKGVAKKLYLLLNQWSRGYEKYLTYIKLYDMLSLDVAKNENNEEIDKKKAYYYNRIIKDALDELTTVKFIQDYDIRTNDGINLIFNINKRNKNRFLDKYNDEKEIINRLQEIGLTLKEWTKYYRLDNQEYVKALLRYVDYKIENKNDIRDVLKFTIDGLKSENYDVKEFIG
>CP013844.1|AUN01454.1|45200_45554_+|hypothetical-protein
MDIINGIEIYSISKEAYKTYKEQAKQGRNASSEIIRRKLTALVINAVERKRIFKNKFTCRFGGFVMVVNEDTKMIEVLFWDNFKTHKSTAPRKSVDNLLETYKKLGLSKSGDELLVA

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Crispr_ID: CP013844_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP013844_2

36376-36474

TypeI-B

Consensus_repeat	Method
ATTATCACATAACATATAATGTTTTTAAATTAT	CRISPRCasFinder

1 spacers

cas3,cas5,cas7b,cas8b1

The CRISPR arrays of CP013844_2

>merge|CP013844|2|36376-36474|CRISPRCasFinder
ATTATCACATAACATATAATGTTTTTAAATTATAAAGCAATAGCACTTTCAATGTCTTTTTGCTTATTATCATATAACATATAATGTTTTTAAATTATG

>CP013844|2|3|36376-36474|CRISPRCasFinder
ATTATCACATAACATATAATGTTTTTAAATTAT	AAAGCAATAGCACTTTCAATGTCTTTTTGCTT
ATTATCATATAACATATAATGTTTTTAAATTATG

Protein	Signature genes	Signature genes Name	Protein_function
CP013844.1\|AUN01444.1\|32186_32936_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
CP013844.1\|AUN01437.1\|25537_26491_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378235
CP013844.1\|AUN01436.1\|25212_25407_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01451.1\|41616_41898_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01445.1\|33770_36236_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|273707
CP013844.1\|AUN01449.1\|38714_40184_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01441.1\|28720_29467_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273848
CP013844.1\|AUN01447.1\|37585_38086_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|372510
CP013844.1\|AUN01448.1\|38132_38585_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01439.1\|27658_28111_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01455.1\|45827_46142_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01438.1\|26663_27455_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01454.1\|45200_45554_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01443.1\|31255_32185_+\|hypothetical-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
CP013844.1\|AUN01442.1\|29480_31253_+\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	unknown
CP013844.1\|AUN01440.1\|28293_28530_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01450.1\|40167_41229_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01446.1\|36972_37560_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367091
CP013844.1\|AUN01453.1\|43708_44893_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370826
CP013844.1\|AUN01452.1\|42042_43329_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222893

Protein	Function_ID	Function_description	E-value
CP013844.1\|AUN01444.1\|32186_32936_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	8.29076e-27
CP013844.1\|AUN01437.1\|25537_26491_+\|hypothetical-protein	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	4.16898e-07
CP013844.1\|AUN01443.1\|31255_32185_+\|hypothetical-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.65004e-17
CP013844.1\|AUN01452.1\|42042_43329_+\|hypothetical-protein	gnl\|CDD\|222893	PHA02587, 30, DNA ligase; Provisional.	1.84323e-49
CP013844.1\|AUN01445.1\|33770_36236_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	6.31332e-26
CP013844.1\|AUN01446.1\|36972_37560_+\|hypothetical-protein	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	5.85927e-26
CP013844.1\|AUN01441.1\|28720_29467_+\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	3.46554e-07
CP013844.1\|AUN01447.1\|37585_38086_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|372510	pfam13176, TPR_7, Tetratricopeptide repeat.	0.00142647
CP013844.1\|AUN01453.1\|43708_44893_+\|hypothetical-protein	gnl\|CDD\|370826	pfam10134, RPA, Replication initiator protein A. Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.	9.56918e-06

>CP013844.1|AUN01445.1|33770_36236_+|CRISPR-associated-helicase/endonuclease-Cas3
MDKYLSRPNEDLIIHLNLTINNYNNYCKTNNLDKIIKNIISKLLQENNIKNEEASKQVYEMFINSIWLHDIGKINPYFQAYISNPNFKDYEFNNENKKHSILSSLIYLNIYYGKIKDVIYSKNRRENKNIKILLYDLLISFAYCISKHHTSLKDFDSIIFFNKLDNTVIQNNLLINNLNIDKEFIKKLKQINYKDVVYTNEFTKYILIKLCYSSIVTCDFLAVYNFYNKKQFHTNAINKNKLKQFNDKYNNLDIIKSIRNYPYNKDKLGKLNKMRTEMFLESESNLMKCISDNIFYLEAPTGSGKSNTSLNLALNILNNSKQFNKIISVNPYNAISEQTYNNTRNSLLIDDKDVVLINSQTEIIESDIEDETHYSKDFLDNQLLNYPVSIISHVKLFKALFSNNRIDNLMLFNIINSVIIIDEVQSYKNNLWIHIINSFKQFSDLLNFKIIIMSATLPKMDCLLEDKTYISNLIHNKNYYYNYFKNRVSLNFNLLNIKQFNKNILCDKINIEIKNNKRILVEFIKNKTANEIYNYYKQKFKSADYLVFNITSNCNSLYKQNVLKLINEKDDKNNFVNQKILVICTQTIEAGVDIDMDVGFKDISLLDSDEQFCGRINRNFKREGVVYFFHLDKITDVYKDDYRCERNLLNEQWQHLLITKQFNKFYELNYKRLLEEEKLNKDYYTYKNNLRTIQFEEIDKTMTLIDEQNCNLYLYCKLKLKDITIDSKNMFNKYIELKKDCNMDYSKKMIKLSKLKKWLGLFTYKFKVFNKNKPSIYNDYIDNYYILENPNEYIDIKEGFINEFSLFNMNKYIEDCNGLFL
>CP013844.1|AUN01444.1|32186_32936_+|type-I-B-CRISPR-associated-protein-Cas5
MECLKFDLGGKTAFFKKPEINDVNFTFSNIHKIATLGMIGAIIGLNGRQQSKENGKIKFYETLKSIELSIVPFSPYFSKTYTIFNNATGFANKSASKHGATQNIKQQWLTNPKWTIYLKQGALDNTIWGKIKKYFLQGNYVYEPYLGGRPHIANITNVNLIDIDNIKNKEDIYKVDSLVKYNEIIDIDSQVYENCEDEYSYCLKEYTPIKLDDRGLYITEKMLHTNYEIYEVKNTNNFYKYNNNILYFI
>CP013844.1|AUN01443.1|31255_32185_+|hypothetical-protein
MKMNNRVYGVTGIGVRNNNFNAGFDKTPKTLSNGTIFGAHQALKYPNRVFWDKLGEKVFYLKSYTEDGNVKKINERFQELFQMEDKDIQAVKSNLFKCVDVMNHGAAYTGNVSVDIRGAVQINNGDNKYELTTIDIFNILSPFGNKNSEKDTKQSSLGDTVVTDEAHYVYSINVNPFEYDKYIGTIEGFEGYTREAYDLFKEASLIAVSDYNSASKTGCQNEFTIFVELKDEMQGKFNLNELGQYIKVYNSENSNKRIYDLTILTEILNSGNISKDIKSIEIYYNPYTLELLENIENAKRFNIITREEI
>CP013844.1|AUN01442.1|29480_31253_+|hypothetical-protein
MFKELIDEIGYNNILEYCENANLQNGIYIKINKDGNIEDKNIIEIENDKKDIENIELINWFKQRNCYSNYIDSNKAIVQRGKGVKTPKIVTSCNCYSVFFNVATILKNSKKMEMSLDKYCKNMITEYFDALINNIMNDKNGLSSIFKSNNIKSYMKKNKTTITKMIKKFFMNEYLLAQDKHRKKCINETKEILIQNIFVLINKLSNVKNIDKKKIKIFIDSEVDDYKKEYLLYLKPRIFLNNENNLILDDKIYGLSSELFTINSKKPLLKTNANLTDIPCLISIKGAIKYRNLIVYLKGNLSKTRELGYDLIFDKDGINVFDIIPFNKKDKLELKPLIIKDYLNKSFDTVEINNKKSLENSFNYFLDGNLYSNKINDNSKAKSFVVMYRDIISNYVYKDIDRDFLYALPKILNQLLNANLNPKKNVFDIMKCFNFRLSLLEYFKNNEKGEVIMKLNNDLKERLRDINTFTINSREEFIYICGQLGYYLNSRSKASPENKKMMLVNTYINCNNIELLKRKLQQDISKYSYDIQLNNDRFKKIIEQISLFKFDNNSISSSEKDYLLAGLFGNNLVYYEKKNNNKNNNNMEGK
>CP013844.1|AUN01441.1|28720_29467_+|hypothetical-protein
MLNKNYELRIKIYLLRDIPLEDANEILSKAIDYTMLLNKNLRPIHTNKGFKHYSFSTPYPVESDRVYKKDRIYSFMIRDYSKQKIKDFQSVFSKLRLNEFVVLTTEIKEYHKKRISHIYTITPTVLTLLEEEVPDKLKTIKTKQKCWVKGCNHLLLIDRIENNLIKKYKDLTQKDIVVNNDIIESVEITNKVPIKINYKDSAIIGNKFKITFAQNELTQEIANLSVVEGILEKNSSLGCGFVKPAFVE
>CP013844.1|AUN01440.1|28293_28530_+|hypothetical-protein
MTNSLKNTIDTDKNREAVNRAKKAIKQYELELKSLDIQMTKNNIILDKYINSDEYKDNLKEIQELEDRERELDKESKK
>CP013844.1|AUN01439.1|27658_28111_+|hypothetical-protein
MEKIKFIYIDVEEETKEIKQLLDKGLIKYFYGKDSNEPDFIFLSENEDIIKSSITSEYRISNILRQLIIMFDGSNINIRNLWGDEINLDYKTLLNLMKENLNSYLSEDTQELIYQAEIPADKLTNIINQNGKEQLQMQIEDLLMESKKVI
>CP013844.1|AUN01438.1|26663_27455_+|hypothetical-protein
MEIKNIQQLIELKKLKWSNPYTQRDFEVNSIDEFKYLLENYLNKFAFGVTYNTFKYTIFKEDDYIYIRNNDTYKFKNGYTGNITEEYTLKENSIDNIIDFIISSPDKNDKRRTRIKFIYIDVDDITDEMKQLLDKGLMKYFYGKNSCEPEFIYLAENEHIIKNTLTAEYCILDFASKLSEIFDCTDMTVRNIWNDEISFYHGRIEDLISDNLYGYIPESKQKEIFNTENPSNKLRTIFNEIGREQLRIQIKDLLKEINRAEFI
>CP013844.1|AUN01437.1|25537_26491_+|hypothetical-protein
MIKNMKNKEFLEKLNMKEMISTQINSWELMLKKKGLKDKTIERKLNNLIYFYMHLTALRKDKERIKIDNISNIAFEYVRDGYFSEDNIDNEGCYGYRRNIYCNLREGFNFIYQGYFKNKIEVINDLIEEQKEVLEDVSKNKWFNVVGIKDDRETIQTKIIEELGLKVYFDKENNPYVLSHETAELIGKKHKDVTKAIRLILDRFTRAKKIALVENVDISMIEDHYTYNTNNGGTKDVITYRLSKDLVINYILGMSGDKYFDFKIKYQSAFNYIEREYKKLLEEHSTLKDSFLKMYNNIRKRNRDLLIKEHNKKAKSK
>CP013844.1|AUN01436.1|25212_25407_+|hypothetical-protein
MNKTLKLKQFNNKIYLYNRKNPVTVGKEIKIIFHDAIVFSGQVTKENISEIQKMITYSDNYIIN
>CP013844.1|AUN01446.1|36972_37560_+|hypothetical-protein
MLNNKIFMKRRGDIVYVDLGNPKGTNQGGKRPCIIVPNNKCTEHSTSIQIIPITSKLNKKRLPTHIFIKKDELNGLNEDSLILVEQTDLISTSQILSVVGRASDEIMRKVNAKLKIQFDLDKPDVNRIKAKIKTLKEMESYILKHNENSEELLNILKFQVSDFRDYCQEYNLNCSQYYVSKFNIINRYFQRNIAA
>CP013844.1|AUN01447.1|37585_38086_+|tetratricopeptide-repeat-protein
MVYTLLKMKIREMYLEKKYEECNKKLTDLYRELIRDNQITLAEQNQLIWYYYFYKSNIFKNQNNLKDSLSFCLKSFRYITFKDKFNTEYKGTLFLLANIYKELNKKQKAIKTYEYLLRITKDKQYEMIFENINNLRQNSNVITFTNKQNKKYDSNKENNFKFCCYF
>CP013844.1|AUN01448.1|38132_38585_+|hypothetical-protein
MKNKIRFIHDNQIKTGYIKTNLNKFKKEFILVEKGKNRYRIPIENLITTENELEINKKLLKHQIDNYISKYNLTIQWVNDTLKVSSILDEWFIEPSKNNLLILQHINKKNKDAKGKFHKQGIFYNYFSALRHIAEHDKTKLGIDFSNKSA
>CP013844.1|AUN01449.1|38714_40184_+|hypothetical-protein
MIENKDYNYDRLIREITGCLSLKQFLMKKPFVIKELENKVNEERINNLFNQDIQIDMLDTRELYLITETFYKMLLDEEFISKLNEFQQQLQKDLNPELYFTEDEIRQYKNSVLPVEEEQDFKTVVFKNVKFMKEGIYSTVDDFNYILDLREKGILFYNINCQRETEKYEWRGTYVEKAKVFSKSIKEISESMYQDKYIPTYIAINVPSNGEEDFHVIDKENGLYDIIIKINKNTSLNLIDGNHRTTGGSLARNMCRRKGKEFLLNMGIQIMNLDPSSARQYIFQESKKNPLDETLTKAMEKTIENEIADYMNKGESPLAGKLGRELKDVKTLNKLTPLYVFAEGLKHFELDELDLIRKNKVKRFLKDFFNCILSFHKDKRRDRELSIEDMLKNKKLKEKKSEEEGYELNMNMFRGYLYIAAKLFNDPNWIEKIDTILKKIDYKKGGALEDMHLFKNEMSKTNIKKLEEYLENILSEVEESGENENVRKN
>CP013844.1|AUN01450.1|40167_41229_+|hypothetical-protein
MSEKIRDFTSLNKLYFRELDERKKEYINFLKNEQDLQDITVDNYTNQIYKIRAFEEIIDRDRTIEYFTLDEISKLLENMTFSSESSAIAYKNRILDYLKFCTEHYGIQKDIGLLNTISQKEFIQGLVNKRLKYLKYVTEGTLYEAVQDLVNPQDRLMALLIYEGVKGTNHADLINIKKEQYDKENKILEYIEQDTGKTKQLRCNEFLSDEIEKTILSDTYYFKNGKGTGRHDMSDIVNSPYLVAPTAQLNARMNNYSGQQVYGQTIQSRILKIFKHFLDINGQHITVQSLYHSGIVNRMVKLTEEKYAGQKLKKVDFVKYIEQNEKLKLQAGYRLYDIYENLYNLFKNDIISF
>CP013844.1|AUN01451.1|41616_41898_+|hypothetical-protein
MEVKLMNYLKGNKGYGITISEIGGDEKFLEDMCYKHNTNLKRIEILGKNEFLEMDKYIIKMENIVNIEEDISNISIFTESETENKEIIIENWD
>CP013844.1|AUN01452.1|42042_43329_+|hypothetical-protein
MKNNLKECLEILKSIGNDSSRIAKETILKENKDNQLLKDILFFLYNPYIVTGISTKKLNKKVKLEVDNKLNTIIDVMDFLKTNNTGTDEHIKVIQNWINNQDLQYQDILKQLVTKSLKIGITSKTINKIHKNFIPEFNVMLAEKYHENINRVKGKFIITTKLDGNRMVLVKENGAIKTFSRQGQLIEGLIDIIEDAKQLQDNMVYDGEILLKNDKNLDSKQLFQETQKIIRKKDIKKTNLIFNIFDMMPLDEFKQGVSINDTLTRKNQLHDILESLETNWVKEVPMLYVGEDINKIDELLNIAVQNGEEGIMINLVDSKYQCKRTKDLLKVKIMNSSDCKIIGYEEGTGRNEGVLGAFIIDYKGHNVKVGSGYTDEDRKMFWENKDAFIEKIIEVQYFEETKNQNGGISLRFPVYKCIRNDKIEPSYF
>CP013844.1|AUN01453.1|43708_44893_+|hypothetical-protein
MDKKEEEQEVETISLKSNQSINESNLMVIPFISMKKTKVKVLERYWISNGVRRGIKVVGSGEHGCPTIAELDVLLALFRILIKNVGFKYEYNRTTGKVSLPKTIHFTYQELSKELGYKTYGGALKKKLENSVKCLNEATIYSDLGLRDVEAGDYIYDFEGEDSFRILEDYKSFSYTKRKKKGEKIGDAKQVKSMQSVTISDFFFKNICNNYFKIYNYNQYLMLTKGVAKKLYLLLNQWSRGYEKYLTYIKLYDMLSLDVAKNENNEEIDKKKAYYYNRIIKDALDELTTVKFIQDYDIRTNDGINLIFNINKRNKNRFLDKYNDEKEIINRLQEIGLTLKEWTKYYRLDNQEYVKALLRYVDYKIENKNDIRDVLKFTIDGLKSENYDVKEFIG
>CP013844.1|AUN01454.1|45200_45554_+|hypothetical-protein
MDIINGIEIYSISKEAYKTYKEQAKQGRNASSEIIRRKLTALVINAVERKRIFKNKFTCRFGGFVMVVNEDTKMIEVLFWDNFKTHKSTAPRKSVDNLLETYKKLGLSKSGDELLVA
>CP013844.1|AUN01455.1|45827_46142_+|hypothetical-protein
MKPNFIKCRLLDIKTQNKGYGADIILKNIGNDENYIIKVDENIERIKGKLKEQYEGNSDKDKIYLTRSMTDIDINATTDDREWCINEEDLNYYVFNKEDVLDFI

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Crispr_ID: CP013844_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP013844_3

36572-36737

TypeI-B

Consensus_repeat	Method
ATTATCACATAACATATAATGTTTTTAAATTAT	CRISPRCasFinder

2 spacers

cas3,cas5,cas7b,cas8b1

The CRISPR arrays of CP013844_3

>merge|CP013844|3|36572-36737|CRISPRCasFinder
GTTATAAGACAACATCGTATGTTTTTAAATTATGTATAAAATAGTTGATTTGATAGTTTACTAAAAGTTATAATATAACATCATATGTTTTTAAATTAATGTAGCATATAAAATATTTCTTATCAAATAGCAAGTTATAATATAACATATAATGTTTTAACTTCAA

>CP013844|3|4|36572-36737|CRISPRCasFinder
GTTATAAGACAACATCGTATGTTTTTAAATTAT	GTATAAAATAGTTGATTTGATAGTTTACTAAAA
GTTATAATATAACATCATATGTTTTTAAATTAA	TGTAGCATATAAAATATTTCTTATCAAATAGCAA
GTTATAATATAACATATAATGTTTTAACTTCAA

Protein	Signature genes	Signature genes Name	Protein_function
CP013844.1\|AUN01444.1\|32186_32936_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
CP013844.1\|AUN01437.1\|25537_26491_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378235
CP013844.1\|AUN01436.1\|25212_25407_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01451.1\|41616_41898_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01445.1\|33770_36236_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|273707
CP013844.1\|AUN01449.1\|38714_40184_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01441.1\|28720_29467_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273848
CP013844.1\|AUN01447.1\|37585_38086_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|372510
CP013844.1\|AUN01448.1\|38132_38585_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01439.1\|27658_28111_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01455.1\|45827_46142_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01438.1\|26663_27455_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01454.1\|45200_45554_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01443.1\|31255_32185_+\|hypothetical-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
CP013844.1\|AUN01442.1\|29480_31253_+\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	unknown
CP013844.1\|AUN01440.1\|28293_28530_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01450.1\|40167_41229_+\|hypothetical-protein	unknown	unknown	unknown
CP013844.1\|AUN01446.1\|36972_37560_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367091
CP013844.1\|AUN01453.1\|43708_44893_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370826
CP013844.1\|AUN01452.1\|42042_43329_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222893

Protein	Function_ID	Function_description	E-value
CP013844.1\|AUN01444.1\|32186_32936_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	8.29076e-27
CP013844.1\|AUN01437.1\|25537_26491_+\|hypothetical-protein	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	4.16898e-07
CP013844.1\|AUN01443.1\|31255_32185_+\|hypothetical-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.65004e-17
CP013844.1\|AUN01452.1\|42042_43329_+\|hypothetical-protein	gnl\|CDD\|222893	PHA02587, 30, DNA ligase; Provisional.	1.84323e-49
CP013844.1\|AUN01445.1\|33770_36236_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	6.31332e-26
CP013844.1\|AUN01446.1\|36972_37560_+\|hypothetical-protein	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	5.85927e-26
CP013844.1\|AUN01441.1\|28720_29467_+\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	3.46554e-07
CP013844.1\|AUN01447.1\|37585_38086_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|372510	pfam13176, TPR_7, Tetratricopeptide repeat.	0.00142647
CP013844.1\|AUN01453.1\|43708_44893_+\|hypothetical-protein	gnl\|CDD\|370826	pfam10134, RPA, Replication initiator protein A. Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.	9.56918e-06

>CP013844.1|AUN01445.1|33770_36236_+|CRISPR-associated-helicase/endonuclease-Cas3
MDKYLSRPNEDLIIHLNLTINNYNNYCKTNNLDKIIKNIISKLLQENNIKNEEASKQVYEMFINSIWLHDIGKINPYFQAYISNPNFKDYEFNNENKKHSILSSLIYLNIYYGKIKDVIYSKNRRENKNIKILLYDLLISFAYCISKHHTSLKDFDSIIFFNKLDNTVIQNNLLINNLNIDKEFIKKLKQINYKDVVYTNEFTKYILIKLCYSSIVTCDFLAVYNFYNKKQFHTNAINKNKLKQFNDKYNNLDIIKSIRNYPYNKDKLGKLNKMRTEMFLESESNLMKCISDNIFYLEAPTGSGKSNTSLNLALNILNNSKQFNKIISVNPYNAISEQTYNNTRNSLLIDDKDVVLINSQTEIIESDIEDETHYSKDFLDNQLLNYPVSIISHVKLFKALFSNNRIDNLMLFNIINSVIIIDEVQSYKNNLWIHIINSFKQFSDLLNFKIIIMSATLPKMDCLLEDKTYISNLIHNKNYYYNYFKNRVSLNFNLLNIKQFNKNILCDKINIEIKNNKRILVEFIKNKTANEIYNYYKQKFKSADYLVFNITSNCNSLYKQNVLKLINEKDDKNNFVNQKILVICTQTIEAGVDIDMDVGFKDISLLDSDEQFCGRINRNFKREGVVYFFHLDKITDVYKDDYRCERNLLNEQWQHLLITKQFNKFYELNYKRLLEEEKLNKDYYTYKNNLRTIQFEEIDKTMTLIDEQNCNLYLYCKLKLKDITIDSKNMFNKYIELKKDCNMDYSKKMIKLSKLKKWLGLFTYKFKVFNKNKPSIYNDYIDNYYILENPNEYIDIKEGFINEFSLFNMNKYIEDCNGLFL
>CP013844.1|AUN01444.1|32186_32936_+|type-I-B-CRISPR-associated-protein-Cas5
MECLKFDLGGKTAFFKKPEINDVNFTFSNIHKIATLGMIGAIIGLNGRQQSKENGKIKFYETLKSIELSIVPFSPYFSKTYTIFNNATGFANKSASKHGATQNIKQQWLTNPKWTIYLKQGALDNTIWGKIKKYFLQGNYVYEPYLGGRPHIANITNVNLIDIDNIKNKEDIYKVDSLVKYNEIIDIDSQVYENCEDEYSYCLKEYTPIKLDDRGLYITEKMLHTNYEIYEVKNTNNFYKYNNNILYFI
>CP013844.1|AUN01443.1|31255_32185_+|hypothetical-protein
MKMNNRVYGVTGIGVRNNNFNAGFDKTPKTLSNGTIFGAHQALKYPNRVFWDKLGEKVFYLKSYTEDGNVKKINERFQELFQMEDKDIQAVKSNLFKCVDVMNHGAAYTGNVSVDIRGAVQINNGDNKYELTTIDIFNILSPFGNKNSEKDTKQSSLGDTVVTDEAHYVYSINVNPFEYDKYIGTIEGFEGYTREAYDLFKEASLIAVSDYNSASKTGCQNEFTIFVELKDEMQGKFNLNELGQYIKVYNSENSNKRIYDLTILTEILNSGNISKDIKSIEIYYNPYTLELLENIENAKRFNIITREEI
>CP013844.1|AUN01442.1|29480_31253_+|hypothetical-protein
MFKELIDEIGYNNILEYCENANLQNGIYIKINKDGNIEDKNIIEIENDKKDIENIELINWFKQRNCYSNYIDSNKAIVQRGKGVKTPKIVTSCNCYSVFFNVATILKNSKKMEMSLDKYCKNMITEYFDALINNIMNDKNGLSSIFKSNNIKSYMKKNKTTITKMIKKFFMNEYLLAQDKHRKKCINETKEILIQNIFVLINKLSNVKNIDKKKIKIFIDSEVDDYKKEYLLYLKPRIFLNNENNLILDDKIYGLSSELFTINSKKPLLKTNANLTDIPCLISIKGAIKYRNLIVYLKGNLSKTRELGYDLIFDKDGINVFDIIPFNKKDKLELKPLIIKDYLNKSFDTVEINNKKSLENSFNYFLDGNLYSNKINDNSKAKSFVVMYRDIISNYVYKDIDRDFLYALPKILNQLLNANLNPKKNVFDIMKCFNFRLSLLEYFKNNEKGEVIMKLNNDLKERLRDINTFTINSREEFIYICGQLGYYLNSRSKASPENKKMMLVNTYINCNNIELLKRKLQQDISKYSYDIQLNNDRFKKIIEQISLFKFDNNSISSSEKDYLLAGLFGNNLVYYEKKNNNKNNNNMEGK
>CP013844.1|AUN01441.1|28720_29467_+|hypothetical-protein
MLNKNYELRIKIYLLRDIPLEDANEILSKAIDYTMLLNKNLRPIHTNKGFKHYSFSTPYPVESDRVYKKDRIYSFMIRDYSKQKIKDFQSVFSKLRLNEFVVLTTEIKEYHKKRISHIYTITPTVLTLLEEEVPDKLKTIKTKQKCWVKGCNHLLLIDRIENNLIKKYKDLTQKDIVVNNDIIESVEITNKVPIKINYKDSAIIGNKFKITFAQNELTQEIANLSVVEGILEKNSSLGCGFVKPAFVE
>CP013844.1|AUN01440.1|28293_28530_+|hypothetical-protein
MTNSLKNTIDTDKNREAVNRAKKAIKQYELELKSLDIQMTKNNIILDKYINSDEYKDNLKEIQELEDRERELDKESKK
>CP013844.1|AUN01439.1|27658_28111_+|hypothetical-protein
MEKIKFIYIDVEEETKEIKQLLDKGLIKYFYGKDSNEPDFIFLSENEDIIKSSITSEYRISNILRQLIIMFDGSNINIRNLWGDEINLDYKTLLNLMKENLNSYLSEDTQELIYQAEIPADKLTNIINQNGKEQLQMQIEDLLMESKKVI
>CP013844.1|AUN01438.1|26663_27455_+|hypothetical-protein
MEIKNIQQLIELKKLKWSNPYTQRDFEVNSIDEFKYLLENYLNKFAFGVTYNTFKYTIFKEDDYIYIRNNDTYKFKNGYTGNITEEYTLKENSIDNIIDFIISSPDKNDKRRTRIKFIYIDVDDITDEMKQLLDKGLMKYFYGKNSCEPEFIYLAENEHIIKNTLTAEYCILDFASKLSEIFDCTDMTVRNIWNDEISFYHGRIEDLISDNLYGYIPESKQKEIFNTENPSNKLRTIFNEIGREQLRIQIKDLLKEINRAEFI
>CP013844.1|AUN01437.1|25537_26491_+|hypothetical-protein
MIKNMKNKEFLEKLNMKEMISTQINSWELMLKKKGLKDKTIERKLNNLIYFYMHLTALRKDKERIKIDNISNIAFEYVRDGYFSEDNIDNEGCYGYRRNIYCNLREGFNFIYQGYFKNKIEVINDLIEEQKEVLEDVSKNKWFNVVGIKDDRETIQTKIIEELGLKVYFDKENNPYVLSHETAELIGKKHKDVTKAIRLILDRFTRAKKIALVENVDISMIEDHYTYNTNNGGTKDVITYRLSKDLVINYILGMSGDKYFDFKIKYQSAFNYIEREYKKLLEEHSTLKDSFLKMYNNIRKRNRDLLIKEHNKKAKSK
>CP013844.1|AUN01436.1|25212_25407_+|hypothetical-protein
MNKTLKLKQFNNKIYLYNRKNPVTVGKEIKIIFHDAIVFSGQVTKENISEIQKMITYSDNYIIN
>CP013844.1|AUN01446.1|36972_37560_+|hypothetical-protein
MLNNKIFMKRRGDIVYVDLGNPKGTNQGGKRPCIIVPNNKCTEHSTSIQIIPITSKLNKKRLPTHIFIKKDELNGLNEDSLILVEQTDLISTSQILSVVGRASDEIMRKVNAKLKIQFDLDKPDVNRIKAKIKTLKEMESYILKHNENSEELLNILKFQVSDFRDYCQEYNLNCSQYYVSKFNIINRYFQRNIAA
>CP013844.1|AUN01447.1|37585_38086_+|tetratricopeptide-repeat-protein
MVYTLLKMKIREMYLEKKYEECNKKLTDLYRELIRDNQITLAEQNQLIWYYYFYKSNIFKNQNNLKDSLSFCLKSFRYITFKDKFNTEYKGTLFLLANIYKELNKKQKAIKTYEYLLRITKDKQYEMIFENINNLRQNSNVITFTNKQNKKYDSNKENNFKFCCYF
>CP013844.1|AUN01448.1|38132_38585_+|hypothetical-protein
MKNKIRFIHDNQIKTGYIKTNLNKFKKEFILVEKGKNRYRIPIENLITTENELEINKKLLKHQIDNYISKYNLTIQWVNDTLKVSSILDEWFIEPSKNNLLILQHINKKNKDAKGKFHKQGIFYNYFSALRHIAEHDKTKLGIDFSNKSA
>CP013844.1|AUN01449.1|38714_40184_+|hypothetical-protein
MIENKDYNYDRLIREITGCLSLKQFLMKKPFVIKELENKVNEERINNLFNQDIQIDMLDTRELYLITETFYKMLLDEEFISKLNEFQQQLQKDLNPELYFTEDEIRQYKNSVLPVEEEQDFKTVVFKNVKFMKEGIYSTVDDFNYILDLREKGILFYNINCQRETEKYEWRGTYVEKAKVFSKSIKEISESMYQDKYIPTYIAINVPSNGEEDFHVIDKENGLYDIIIKINKNTSLNLIDGNHRTTGGSLARNMCRRKGKEFLLNMGIQIMNLDPSSARQYIFQESKKNPLDETLTKAMEKTIENEIADYMNKGESPLAGKLGRELKDVKTLNKLTPLYVFAEGLKHFELDELDLIRKNKVKRFLKDFFNCILSFHKDKRRDRELSIEDMLKNKKLKEKKSEEEGYELNMNMFRGYLYIAAKLFNDPNWIEKIDTILKKIDYKKGGALEDMHLFKNEMSKTNIKKLEEYLENILSEVEESGENENVRKN
>CP013844.1|AUN01450.1|40167_41229_+|hypothetical-protein
MSEKIRDFTSLNKLYFRELDERKKEYINFLKNEQDLQDITVDNYTNQIYKIRAFEEIIDRDRTIEYFTLDEISKLLENMTFSSESSAIAYKNRILDYLKFCTEHYGIQKDIGLLNTISQKEFIQGLVNKRLKYLKYVTEGTLYEAVQDLVNPQDRLMALLIYEGVKGTNHADLINIKKEQYDKENKILEYIEQDTGKTKQLRCNEFLSDEIEKTILSDTYYFKNGKGTGRHDMSDIVNSPYLVAPTAQLNARMNNYSGQQVYGQTIQSRILKIFKHFLDINGQHITVQSLYHSGIVNRMVKLTEEKYAGQKLKKVDFVKYIEQNEKLKLQAGYRLYDIYENLYNLFKNDIISF
>CP013844.1|AUN01451.1|41616_41898_+|hypothetical-protein
MEVKLMNYLKGNKGYGITISEIGGDEKFLEDMCYKHNTNLKRIEILGKNEFLEMDKYIIKMENIVNIEEDISNISIFTESETENKEIIIENWD
>CP013844.1|AUN01452.1|42042_43329_+|hypothetical-protein
MKNNLKECLEILKSIGNDSSRIAKETILKENKDNQLLKDILFFLYNPYIVTGISTKKLNKKVKLEVDNKLNTIIDVMDFLKTNNTGTDEHIKVIQNWINNQDLQYQDILKQLVTKSLKIGITSKTINKIHKNFIPEFNVMLAEKYHENINRVKGKFIITTKLDGNRMVLVKENGAIKTFSRQGQLIEGLIDIIEDAKQLQDNMVYDGEILLKNDKNLDSKQLFQETQKIIRKKDIKKTNLIFNIFDMMPLDEFKQGVSINDTLTRKNQLHDILESLETNWVKEVPMLYVGEDINKIDELLNIAVQNGEEGIMINLVDSKYQCKRTKDLLKVKIMNSSDCKIIGYEEGTGRNEGVLGAFIIDYKGHNVKVGSGYTDEDRKMFWENKDAFIEKIIEVQYFEETKNQNGGISLRFPVYKCIRNDKIEPSYF
>CP013844.1|AUN01453.1|43708_44893_+|hypothetical-protein
MDKKEEEQEVETISLKSNQSINESNLMVIPFISMKKTKVKVLERYWISNGVRRGIKVVGSGEHGCPTIAELDVLLALFRILIKNVGFKYEYNRTTGKVSLPKTIHFTYQELSKELGYKTYGGALKKKLENSVKCLNEATIYSDLGLRDVEAGDYIYDFEGEDSFRILEDYKSFSYTKRKKKGEKIGDAKQVKSMQSVTISDFFFKNICNNYFKIYNYNQYLMLTKGVAKKLYLLLNQWSRGYEKYLTYIKLYDMLSLDVAKNENNEEIDKKKAYYYNRIIKDALDELTTVKFIQDYDIRTNDGINLIFNINKRNKNRFLDKYNDEKEIINRLQEIGLTLKEWTKYYRLDNQEYVKALLRYVDYKIENKNDIRDVLKFTIDGLKSENYDVKEFIG
>CP013844.1|AUN01454.1|45200_45554_+|hypothetical-protein
MDIINGIEIYSISKEAYKTYKEQAKQGRNASSEIIRRKLTALVINAVERKRIFKNKFTCRFGGFVMVVNEDTKMIEVLFWDNFKTHKSTAPRKSVDNLLETYKKLGLSKSGDELLVA
>CP013844.1|AUN01455.1|45827_46142_+|hypothetical-protein
MKPNFIKCRLLDIKTQNKGYGADIILKNIGNDENYIIKVDENIERIKGKLKEQYEGNSDKDKIYLTRSMTDIDINATTDDREWCINEEDLNYYVFNKEDVLDFI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP013844_1	1.2\|33196\|36\|CP013844\|PILER-CR	33196-33231	36	CP013845.1	2737020-2737055	0	1.0

1. spacer 1.2|33196|36|CP013844|PILER-CR matches to position: 2737020-2737055, mismatch: 0, identity: 1.0

cgtctaattggatcaaaaactctattaactttttga	CRISPR spacer
cgtctaattggatcaaaaactctattaactttttga	Protospacer
************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP013844_1	1.1\|33130\|36\|CP013844\|PILER-CR	33130-33165	36	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	202684-202719	0	1.0
CP013844_1	1.1\|33130\|36\|CP013844\|PILER-CR	33130-33165	36	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	33130-33165	0	1.0
CP013844_1	1.2\|33196\|36\|CP013844\|PILER-CR	33196-33231	36	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	202750-202785	0	1.0
CP013844_1	1.2\|33196\|36\|CP013844\|PILER-CR	33196-33231	36	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	33196-33231	0	1.0
CP013844_1	1.3\|33262\|36\|CP013844\|PILER-CR	33262-33297	36	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	202816-202851	0	1.0
CP013844_1	1.3\|33262\|36\|CP013844\|PILER-CR	33262-33297	36	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	33262-33297	0	1.0
CP013844_1	1.4\|33130\|39\|CP013844\|CRISPRCasFinder,CRT	33130-33168	39	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	202684-202722	0	1.0
CP013844_1	1.4\|33130\|39\|CP013844\|CRISPRCasFinder,CRT	33130-33168	39	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	33130-33168	0	1.0
CP013844_1	1.5\|33196\|39\|CP013844\|CRISPRCasFinder,CRT	33196-33234	39	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	202750-202788	0	1.0
CP013844_1	1.5\|33196\|39\|CP013844\|CRISPRCasFinder,CRT	33196-33234	39	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	33196-33234	0	1.0
CP013844_1	1.6\|33262\|39\|CP013844\|CRISPRCasFinder,CRT	33262-33300	39	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	202816-202854	0	1.0
CP013844_1	1.6\|33262\|39\|CP013844\|CRISPRCasFinder,CRT	33262-33300	39	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	33262-33300	0	1.0
CP013844_1	1.7\|33328\|38\|CP013844\|CRISPRCasFinder,CRT	33328-33365	38	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	202882-202919	0	1.0
CP013844_1	1.7\|33328\|38\|CP013844\|CRISPRCasFinder,CRT	33328-33365	38	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	33328-33365	0	1.0
CP013844_1	1.8\|33393\|39\|CP013844\|CRT	33393-33431	39	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	202947-202985	0	1.0
CP013844_1	1.8\|33393\|39\|CP013844\|CRT	33393-33431	39	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	33393-33431	0	1.0
CP013844_1	1.9\|33459\|39\|CP013844\|CRT	33459-33497	39	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	203013-203051	0	1.0
CP013844_1	1.9\|33459\|39\|CP013844\|CRT	33459-33497	39	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	33459-33497	0	1.0
CP013844_1	1.10\|33525\|39\|CP013844\|CRT,CRISPRCasFinder	33525-33563	39	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	203079-203117	0	1.0
CP013844_1	1.10\|33525\|39\|CP013844\|CRT,CRISPRCasFinder	33525-33563	39	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	33525-33563	0	1.0
CP013844_1	1.11\|33591\|37\|CP013844\|CRT	33591-33627	37	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	203145-203181	0	1.0
CP013844_1	1.11\|33591\|37\|CP013844\|CRT	33591-33627	37	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	33591-33627	0	1.0
CP013844_2	2.1\|36409\|32\|CP013844\|CRISPRCasFinder	36409-36440	32	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	245-276	0	1.0
CP013844_2	2.1\|36409\|32\|CP013844\|CRISPRCasFinder	36409-36440	32	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	36409-36440	0	1.0
CP013844_3	3.1\|36605\|33\|CP013844\|CRISPRCasFinder	36605-36637	33	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	441-473	0	1.0
CP013844_3	3.1\|36605\|33\|CP013844\|CRISPRCasFinder	36605-36637	33	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	36605-36637	0	1.0
CP013844_3	3.2\|36671\|34\|CP013844\|CRISPRCasFinder	36671-36704	34	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	507-540	0	1.0
CP013844_3	3.2\|36671\|34\|CP013844\|CRISPRCasFinder	36671-36704	34	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	36671-36704	0	1.0
CP013844_3	3.2\|36671\|34\|CP013844\|CRISPRCasFinder	36671-36704	34	MH920640	Synechoccus phage S-E7, complete genome	124090-124123	7	0.794
CP013844_3	3.2\|36671\|34\|CP013844\|CRISPRCasFinder	36671-36704	34	MH920639	Synechoccus phage S-P4, partial genome	134518-134551	7	0.794
CP013844_3	3.2\|36671\|34\|CP013844\|CRISPRCasFinder	36671-36704	34	HQ634189	Cyanophage Syn30 genomic sequence	66079-66112	7	0.794
CP013844_1	1.2\|33196\|36\|CP013844\|PILER-CR	33196-33231	36	AP014127	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C44-MedDCM-OCT-S31-C46, * SEQUENCING IN PROGRESS *	4729-4764	10	0.722
CP013844_3	3.2\|36671\|34\|CP013844\|CRISPRCasFinder	36671-36704	34	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	207820-207853	10	0.706
CP013844_3	3.2\|36671\|34\|CP013844\|CRISPRCasFinder	36671-36704	34	NZ_MF477836	Macrococcus canis strain KM0218 plasmid pKM0218, complete sequence	5973-6006	11	0.676

1. spacer 1.1|33130|36|CP013844|PILER-CR matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 0, identity: 1.0

aattactcaaggaaaaatactgctttagaaaacttc	CRISPR spacer
aattactcaaggaaaaatactgctttagaaaacttc	Protospacer
************************************

2. spacer 1.1|33130|36|CP013844|PILER-CR matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 0, identity: 1.0

aattactcaaggaaaaatactgctttagaaaacttc	CRISPR spacer
aattactcaaggaaaaatactgctttagaaaacttc	Protospacer
************************************

3. spacer 1.2|33196|36|CP013844|PILER-CR matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtctaattggatcaaaaactctattaactttttga	CRISPR spacer
cgtctaattggatcaaaaactctattaactttttga	Protospacer
************************************

4. spacer 1.2|33196|36|CP013844|PILER-CR matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtctaattggatcaaaaactctattaactttttga	CRISPR spacer
cgtctaattggatcaaaaactctattaactttttga	Protospacer
************************************

5. spacer 1.3|33262|36|CP013844|PILER-CR matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 0, identity: 1.0

taattatttgttgcaatctatatataataaatatga	CRISPR spacer
taattatttgttgcaatctatatataataaatatga	Protospacer
************************************

6. spacer 1.3|33262|36|CP013844|PILER-CR matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 0, identity: 1.0

taattatttgttgcaatctatatataataaatatga	CRISPR spacer
taattatttgttgcaatctatatataataaatatga	Protospacer
************************************

7. spacer 1.4|33130|39|CP013844|CRISPRCasFinder,CRT matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 0, identity: 1.0

aattactcaaggaaaaatactgctttagaaaacttcgtc	CRISPR spacer
aattactcaaggaaaaatactgctttagaaaacttcgtc	Protospacer
***************************************

8. spacer 1.4|33130|39|CP013844|CRISPRCasFinder,CRT matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 0, identity: 1.0

aattactcaaggaaaaatactgctttagaaaacttcgtc	CRISPR spacer
aattactcaaggaaaaatactgctttagaaaacttcgtc	Protospacer
***************************************

9. spacer 1.5|33196|39|CP013844|CRISPRCasFinder,CRT matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtctaattggatcaaaaactctattaactttttgagtt	CRISPR spacer
cgtctaattggatcaaaaactctattaactttttgagtt	Protospacer
***************************************

10. spacer 1.5|33196|39|CP013844|CRISPRCasFinder,CRT matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtctaattggatcaaaaactctattaactttttgagtt	CRISPR spacer
cgtctaattggatcaaaaactctattaactttttgagtt	Protospacer
***************************************

11. spacer 1.6|33262|39|CP013844|CRISPRCasFinder,CRT matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 0, identity: 1.0

taattatttgttgcaatctatatataataaatatgagtt	CRISPR spacer
taattatttgttgcaatctatatataataaatatgagtt	Protospacer
***************************************

12. spacer 1.6|33262|39|CP013844|CRISPRCasFinder,CRT matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 0, identity: 1.0

taattatttgttgcaatctatatataataaatatgagtt	CRISPR spacer
taattatttgttgcaatctatatataataaatatgagtt	Protospacer
***************************************

13. spacer 1.7|33328|38|CP013844|CRISPRCasFinder,CRT matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 0, identity: 1.0

atgaatgacaatcgctatacatgtagaacaatagagtt	CRISPR spacer
atgaatgacaatcgctatacatgtagaacaatagagtt	Protospacer
**************************************

14. spacer 1.7|33328|38|CP013844|CRISPRCasFinder,CRT matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 0, identity: 1.0

atgaatgacaatcgctatacatgtagaacaatagagtt	CRISPR spacer
atgaatgacaatcgctatacatgtagaacaatagagtt	Protospacer
**************************************

15. spacer 1.8|33393|39|CP013844|CRT matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 0, identity: 1.0

tcgtatagtttttctgttaaaggaatttttcttttgtta	CRISPR spacer
tcgtatagtttttctgttaaaggaatttttcttttgtta	Protospacer
***************************************

16. spacer 1.8|33393|39|CP013844|CRT matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 0, identity: 1.0

tcgtatagtttttctgttaaaggaatttttcttttgtta	CRISPR spacer
tcgtatagtttttctgttaaaggaatttttcttttgtta	Protospacer
***************************************

17. spacer 1.9|33459|39|CP013844|CRT matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 0, identity: 1.0

tacgatgctgacgcctctgaaattgaaatagttacagtt	CRISPR spacer
tacgatgctgacgcctctgaaattgaaatagttacagtt	Protospacer
***************************************

18. spacer 1.9|33459|39|CP013844|CRT matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 0, identity: 1.0

tacgatgctgacgcctctgaaattgaaatagttacagtt	CRISPR spacer
tacgatgctgacgcctctgaaattgaaatagttacagtt	Protospacer
***************************************

19. spacer 1.10|33525|39|CP013844|CRT,CRISPRCasFinder matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 0, identity: 1.0

tagaatatggaataagacattctttaaagatgatgagtt	CRISPR spacer
tagaatatggaataagacattctttaaagatgatgagtt	Protospacer
***************************************

20. spacer 1.10|33525|39|CP013844|CRT,CRISPRCasFinder matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 0, identity: 1.0

tagaatatggaataagacattctttaaagatgatgagtt	CRISPR spacer
tagaatatggaataagacattctttaaagatgatgagtt	Protospacer
***************************************

21. spacer 1.11|33591|37|CP013844|CRT matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 0, identity: 1.0

tttaatagaataataagttttcaagcctttaagagtt	CRISPR spacer
tttaatagaataataagttttcaagcctttaagagtt	Protospacer
*************************************

22. spacer 1.11|33591|37|CP013844|CRT matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 0, identity: 1.0

tttaatagaataataagttttcaagcctttaagagtt	CRISPR spacer
tttaatagaataataagttttcaagcctttaagagtt	Protospacer
*************************************

23. spacer 2.1|36409|32|CP013844|CRISPRCasFinder matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 0, identity: 1.0

aaagcaatagcactttcaatgtctttttgctt	CRISPR spacer
aaagcaatagcactttcaatgtctttttgctt	Protospacer
********************************

24. spacer 2.1|36409|32|CP013844|CRISPRCasFinder matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 0, identity: 1.0

aaagcaatagcactttcaatgtctttttgctt	CRISPR spacer
aaagcaatagcactttcaatgtctttttgctt	Protospacer
********************************

25. spacer 3.1|36605|33|CP013844|CRISPRCasFinder matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 0, identity: 1.0

gtataaaatagttgatttgatagtttactaaaa	CRISPR spacer
gtataaaatagttgatttgatagtttactaaaa	Protospacer
*********************************

26. spacer 3.1|36605|33|CP013844|CRISPRCasFinder matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 0, identity: 1.0

gtataaaatagttgatttgatagtttactaaaa	CRISPR spacer
gtataaaatagttgatttgatagtttactaaaa	Protospacer
*********************************

27. spacer 3.2|36671|34|CP013844|CRISPRCasFinder matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 0, identity: 1.0

tgtagcatataaaatatttcttatcaaatagcaa	CRISPR spacer
tgtagcatataaaatatttcttatcaaatagcaa	Protospacer
**********************************

28. spacer 3.2|36671|34|CP013844|CRISPRCasFinder matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 0, identity: 1.0

tgtagcatataaaatatttcttatcaaatagcaa	CRISPR spacer
tgtagcatataaaatatttcttatcaaatagcaa	Protospacer
**********************************

29. spacer 3.2|36671|34|CP013844|CRISPRCasFinder matches to MH920640 (Synechoccus phage S-E7, complete genome) position: , mismatch: 7, identity: 0.794

tgtagcatataaaatatttcttatcaaatagcaa	CRISPR spacer
tcaaaccaataaaatttttcttatcaaatggcaa	Protospacer
*  *.*  ******* *************.****

30. spacer 3.2|36671|34|CP013844|CRISPRCasFinder matches to MH920639 (Synechoccus phage S-P4, partial genome) position: , mismatch: 7, identity: 0.794

tgtagcatataaaatatttcttatcaaatagcaa	CRISPR spacer
tcaaaccaataaaatttttcttatcaaatggcaa	Protospacer
*  *.*  ******* *************.****

31. spacer 3.2|36671|34|CP013844|CRISPRCasFinder matches to HQ634189 (Cyanophage Syn30 genomic sequence) position: , mismatch: 7, identity: 0.794

tgtagcatataaaatatttcttatcaaatagcaa	CRISPR spacer
tcaaaccaataaaatttttcttatcaaatggcaa	Protospacer
*  *.*  ******* *************.****

32. spacer 1.2|33196|36|CP013844|PILER-CR matches to AP014127 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C44-MedDCM-OCT-S31-C46, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.722

cgtctaattggatcaaaaactctattaactttttga	CRISPR spacer
tttaaatctgtatcaaaaaatctattaactttttct	Protospacer
. *  * .** ******** **************

33. spacer 3.2|36671|34|CP013844|CRISPRCasFinder matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 10, identity: 0.706

tgtagcatataaaatatttcttatcaaatagcaa	CRISPR spacer
ttccttatataaaatacttcttatcagatatcgc	Protospacer
* .  .**********.*********.*** *.

34. spacer 3.2|36671|34|CP013844|CRISPRCasFinder matches to NZ_MF477836 (Macrococcus canis strain KM0218 plasmid pKM0218, complete sequence) position: , mismatch: 11, identity: 0.676

tgtagcatataaaatatttcttatcaaatagcaa	CRISPR spacer
aatcaaatttaaaatctttcttatcaaatatatt	Protospacer
 .* . ** ****** **************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

74008 : 113612

Bacillus_phage(33.33%)

transposase,integrase,portal,capsid

attL 67084:67100|attR 115209:115225

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
67084:67100	attL	NA	NA	NA	NA
AUN01495.1\|74008_75139_+\|transposase	transposase	A0A1S5SA77	Streptococcus_phage	9.1e-08	27.3
AUN01496.1\|75138_77112_+\|integrase	integrase	A0A1S5SEW7	Streptococcus_phage	9.6e-05	25.8
AUN01497.1\|77111_77486_+\|transposase	transposase	NA	NA	NA	NA
AUN01498.1\|77610_78126_+	hypothetical protein	NA	NA	NA	NA
AUN01499.1\|78150_78408_+	rRNA methyltransferase	NA	NA	NA	NA
AUN01500.1\|78412_78883_+	hypothetical protein	NA	NA	NA	NA
AUN01501.1\|78885_79347_+	resolvase	NA	NA	NA	NA
AUN01502.1\|79379_80234_+	hypothetical protein	A0A0M4S6X1	Salmonella_phage	5.1e-19	28.5
AUN01503.1\|80462_80699_+	hypothetical protein	NA	NA	NA	NA
AUN01504.1\|80688_81351_+\|portal	portal protein	NA	NA	NA	NA
AUN01505.1\|81356_81590_+	hypothetical protein	NA	NA	NA	NA
AUN01506.1\|81580_83290_+	DUF2326 domain-containing protein	NA	NA	NA	NA
AUN01507.1\|83598_83898_-\|capsid	capsid protein	NA	NA	NA	NA
AUN01653.1\|84285_84399_+	ATP synthase subunit beta	NA	NA	NA	NA
AUN01508.1\|84489_84834_+	hypothetical protein	A0A0N9RRG7	Staphylococcus_phage	9.5e-17	42.0
AUN01509.1\|84844_86671_+	hypothetical protein	A0A1P8CX07	Bacillus_phage	2.9e-104	38.0
AUN01654.1\|86761_88231_+	hypothetical protein	A0A1P8CX14	Bacillus_phage	6.7e-120	46.4
AUN01510.1\|88457_89273_+	hypothetical protein	G3MA71	Bacillus_virus	1.9e-15	40.4
AUN01511.1\|89482_92116_+	hypothetical protein	A0A1P8CX14	Bacillus_phage	2.1e-217	45.4
AUN01512.1\|92121_94419_+	hypothetical protein	A0A0K2FLP8	Brevibacillus_phage	1.5e-86	32.9
AUN01513.1\|94519_94777_+	hypothetical protein	NA	NA	NA	NA
AUN01514.1\|94827_95394_+	hypothetical protein	Q332D2	Clostridium_botulinum_C_phage	3.3e-43	48.9
AUN01515.1\|95553_96099_+	hypothetical protein	NA	NA	NA	NA
AUN01516.1\|96155_96971_+	hypothetical protein	A0A167RJL8	Powai_lake_megavirus	4.1e-10	26.5
AUN01517.1\|97009_97381_+	hypothetical protein	NA	NA	NA	NA
AUN01518.1\|97387_98005_+	hypothetical protein	NA	NA	NA	NA
AUN01519.1\|98061_98349_+	hypothetical protein	NA	NA	NA	NA
AUN01520.1\|98422_98764_+	hypothetical protein	NA	NA	NA	NA
AUN01521.1\|98784_99426_+	hypothetical protein	NA	NA	NA	NA
AUN01522.1\|99448_99841_+	hypothetical protein	NA	NA	NA	NA
AUN01523.1\|100013_100877_+	hypothetical protein	A0A1C8E9A9	Bacillus_phage	4.9e-38	34.2
AUN01524.1\|101011_101371_+	hypothetical protein	NA	NA	NA	NA
AUN01525.1\|101393_101804_+	hypothetical protein	NA	NA	NA	NA
AUN01526.1\|101838_102039_+	hypothetical protein	NA	NA	NA	NA
AUN01527.1\|102051_102681_+	hypothetical protein	NA	NA	NA	NA
AUN01528.1\|102759_102978_+	hypothetical protein	NA	NA	NA	NA
AUN01529.1\|102977_103499_+	ribonucleoside-triphosphate reductase	Q332F1	Clostridium_botulinum_C_phage	2.9e-57	57.6
AUN01530.1\|103502_105434_+	anaerobic ribonucleoside-triphosphate reductase	Q332F0	Clostridium_botulinum_C_phage	1.1e-252	48.8
AUN01531.1\|105567_106251_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	A0A0K2FMI0	Brevibacillus_phage	5.7e-21	33.6
AUN01655.1\|106389_106989_+	hypothetical protein	A0A1P8CWZ4	Bacillus_phage	3.9e-34	42.1
AUN01532.1\|107043_107319_+	hypothetical protein	NA	NA	NA	NA
AUN01533.1\|107582_107927_+	hypothetical protein	NA	NA	NA	NA
AUN01534.1\|108137_108347_+	hypothetical protein	NA	NA	NA	NA
AUN01535.1\|108375_108591_+	hypothetical protein	NA	NA	NA	NA
AUN01536.1\|108677_109079_+	hypothetical protein	NA	NA	NA	NA
AUN01537.1\|109143_109506_+	hypothetical protein	NA	NA	NA	NA
AUN01538.1\|109677_110226_+	hypothetical protein	A0A2I6UHP6	Bacillus_phage	1.0e-17	36.3
AUN01539.1\|110438_110618_+	hypothetical protein	NA	NA	NA	NA
AUN01540.1\|110632_110953_+	hypothetical protein	NA	NA	NA	NA
AUN01541.1\|110964_111276_+	hypothetical protein	NA	NA	NA	NA
AUN01542.1\|111315_111858_+	hypothetical protein	NA	NA	NA	NA
AUN01543.1\|111914_112073_-	DNA-binding protein	NA	NA	NA	NA
AUN01544.1\|112076_113612_+\|transposase	transposase	A0A0H3UZK2	Geobacillus_virus	2.5e-141	54.6
115209:115225	attR	NA	NA	NA	NA

DBSCAN-SWA_2

155693 : 174372

Bacillus_phage(44.44%)

transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN01597.1\|155693_158393_-	hypothetical protein	A0A218KC90	Bacillus_phage	1.7e-68	28.8
AUN01598.1\|158424_159051_-	hypothetical protein	NA	NA	NA	NA
AUN01599.1\|159407_160520_-\|transposase	transposase	D2XQ03	Bacillus_virus	3.6e-89	47.8
AUN01600.1\|160629_160791_+	hypothetical protein	B5LPT4	Bacillus_virus	2.0e-06	66.7
AUN01601.1\|161267_163502_-	hypothetical protein	A0A1P8CWP8	Bacillus_phage	2.5e-25	34.4
AUN01602.1\|163552_164143_-	hypothetical protein	NA	NA	NA	NA
AUN01658.1\|164362_165526_-	hypothetical protein	S6AND0	Bacillus_phage	6.2e-76	43.0
AUN01603.1\|165712_165913_+	transcriptional regulator	A0A0C5ABM0	Bacteriophage	5.7e-14	55.4
AUN01604.1\|166393_170839_-	hypothetical protein	A0A0H3V0Q1	Geobacillus_virus	1.9e-37	32.7
AUN01605.1\|171225_171852_-\|tail	phage tail tape measure protein	A0A1P8CWQ1	Bacillus_phage	2.3e-08	28.7
AUN01606.1\|172162_173659_-	hypothetical protein	NA	NA	NA	NA
AUN01607.1\|173823_174372_-	N-acetyltransferase	Q8HA62	Vibrio_phage	3.5e-05	27.3

DBSCAN-SWA_3

184412 : 208128

Clostridium_botulinum_C_phage(58.82%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN01621.1\|184412_184931_-	hypothetical protein	Q331W6	Clostridium_botulinum_C_phage	1.0e-06	25.3
AUN01622.1\|185033_186257_-	hypothetical protein	Q331W5	Clostridium_botulinum_C_phage	1.8e-41	29.2
AUN01623.1\|186274_186685_-	hypothetical protein	Q331W4	Clostridium_botulinum_C_phage	2.3e-33	53.8
AUN01624.1\|186705_187236_-	hypothetical protein	Q331W3	Clostridium_botulinum_C_phage	1.4e-59	61.8
AUN01625.1\|187304_188360_-	phage morphogenesis protein	Q331W2	Clostridium_botulinum_C_phage	9.4e-132	67.8
AUN01626.1\|188388_188922_-	phage morphogenesis protein	Q331W1	Clostridium_botulinum_C_phage	3.1e-59	63.5
AUN01627.1\|188957_190403_-	hypothetical protein	Q331W0	Clostridium_botulinum_C_phage	9.3e-98	51.6
AUN01628.1\|190603_192175_-	hypothetical protein	Q331V9	Clostridium_botulinum_C_phage	1.3e-182	62.0
AUN01661.1\|192203_193016_-	hypothetical protein	V9VGI9	Lactococcus_phage	2.1e-14	27.9
AUN01629.1\|193960_194995_-	hypothetical protein	NA	NA	NA	NA
AUN01630.1\|195144_195783_-	hypothetical protein	NA	NA	NA	NA
AUN01631.1\|195779_197054_-	hypothetical protein	A0A0H3V0M6	Geobacillus_virus	4.7e-61	37.0
AUN01632.1\|197305_198097_-	hypothetical protein	A0A0A7RUT3	Clostridium_phage	2.6e-17	40.6
AUN01633.1\|198487_198793_-	hypothetical protein	NA	NA	NA	NA
AUN01634.1\|198818_199064_-	hypothetical protein	NA	NA	NA	NA
AUN01635.1\|199125_199320_-	hypothetical protein	NA	NA	NA	NA
AUN01636.1\|199371_200595_-	hypothetical protein	A0A0K2FL36	Brevibacillus_phage	1.5e-64	39.1
AUN01637.1\|200695_200983_-	hypothetical protein	A4JWM7	Burkholderia_virus	9.0e-05	40.0
AUN01638.1\|201079_201805_-	hypothetical protein	A0A0A8WIF2	Clostridium_phage	8.4e-23	45.7
AUN01639.1\|201889_202768_-	hypothetical protein	NA	NA	NA	NA
AUN01640.1\|202951_203146_-	hypothetical protein	NA	NA	NA	NA
AUN01641.1\|203502_204303_-	hypothetical protein	Q331U9	Clostridium_botulinum_C_phage	3.3e-52	44.6
AUN01642.1\|204305_207143_-	hypothetical protein	Q331U7	Clostridium_botulinum_C_phage	4.8e-199	59.9
AUN01643.1\|207174_208128_-	hypothetical protein	A0A1B0WLE1	Flavobacterium_phage	2.1e-05	38.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP013845

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP013845_2	2.2\|2325080\|34\|CP013845\|CRISPRCasFinder	2325080-2325113	34	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	1269-1302	1	0.971
CP013845_2	2.2\|2325080\|34\|CP013845\|CRISPRCasFinder	2325080-2325113	34	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	56713-56746	1	0.971
CP013845_2	2.2\|2325080\|34\|CP013845\|CRISPRCasFinder	2325080-2325113	34	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	177272-177305	1	0.971
CP013845_2	2.2\|2325080\|34\|CP013845\|CRISPRCasFinder	2325080-2325113	34	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	192981-193014	1	0.971
CP013845_2	2.2\|2325080\|34\|CP013845\|CRISPRCasFinder	2325080-2325113	34	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	33299-33332	1	0.971
CP013845_2	2.2\|2325080\|34\|CP013845\|CRISPRCasFinder	2325080-2325113	34	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	107476-107509	1	0.971
CP013845_2	2.2\|2325080\|34\|CP013845\|CRISPRCasFinder	2325080-2325113	34	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	248506-248539	1	0.971
CP013845_2	2.2\|2325080\|34\|CP013845\|CRISPRCasFinder	2325080-2325113	34	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	229227-229260	1	0.971
CP013845_2	2.2\|2325080\|34\|CP013845\|CRISPRCasFinder	2325080-2325113	34	NC_012654	Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence	134176-134209	2	0.941
CP013845_2	2.2\|2325080\|34\|CP013845\|CRISPRCasFinder	2325080-2325113	34	NZ_CP031095	Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence	247974-248007	2	0.941
CP013845_1	1.2\|2324664\|34\|CP013845\|CRISPRCasFinder	2324664-2324697	34	MT774405	CrAssphage cr115_1, complete genome	77868-77901	8	0.765
CP013845_1	1.2\|2324664\|34\|CP013845\|CRISPRCasFinder	2324664-2324697	34	JX415535	Escherichia phage ECBP1, complete genome	3653-3686	8	0.765
CP013845_1	1.2\|2324664\|34\|CP013845\|CRISPRCasFinder	2324664-2324697	34	MH669274	Escherichia phage PD38, complete genome	2767-2800	8	0.765
CP013845_1	1.2\|2324664\|34\|CP013845\|CRISPRCasFinder	2324664-2324697	34	KJ135004	Enterobacteria phage Bp4, complete genome	69783-69816	8	0.765
CP013845_1	1.2\|2324664\|34\|CP013845\|CRISPRCasFinder	2324664-2324697	34	NC_010180	Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence	132080-132113	9	0.735
CP013845_1	1.2\|2324664\|34\|CP013845\|CRISPRCasFinder	2324664-2324697	34	MN694536	Marine virus AFVG_250M991, complete genome	5402-5435	9	0.735
CP013845_1	1.2\|2324664\|34\|CP013845\|CRISPRCasFinder	2324664-2324697	34	NZ_CP035189	Bacillus licheniformis strain SRCM103914 plasmid unnamed1, complete sequence	141895-141928	10	0.706

1. spacer 2.2|2325080|34|CP013845|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 1, identity: 0.971

tacaatatataatgataaaataaatcaattgaat	CRISPR spacer
tacaatatataatgataagataaatcaattgaat	Protospacer
******************.***************

2. spacer 2.2|2325080|34|CP013845|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 1, identity: 0.971

tacaatatataatgataaaataaatcaattgaat	CRISPR spacer
tacaatatacaatgataaaataaatcaattgaat	Protospacer
*********.************************

3. spacer 2.2|2325080|34|CP013845|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 1, identity: 0.971

tacaatatataatgataaaataaatcaattgaat	CRISPR spacer
tacaatatacaatgataaaataaatcaattgaat	Protospacer
*********.************************

4. spacer 2.2|2325080|34|CP013845|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 1, identity: 0.971

tacaatatataatgataaaataaatcaattgaat	CRISPR spacer
tacaatatataatgataagataaatcaattgaat	Protospacer
******************.***************

5. spacer 2.2|2325080|34|CP013845|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 1, identity: 0.971

tacaatatataatgataaaataaatcaattgaat	CRISPR spacer
tacaatatataatgataagataaatcaattgaat	Protospacer
******************.***************

6. spacer 2.2|2325080|34|CP013845|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 1, identity: 0.971

tacaatatataatgataaaataaatcaattgaat	CRISPR spacer
tacaatatacaatgataaaataaatcaattgaat	Protospacer
*********.************************

7. spacer 2.2|2325080|34|CP013845|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 1, identity: 0.971

tacaatatataatgataaaataaatcaattgaat	CRISPR spacer
tacaatatataatgataagataaatcaattgaat	Protospacer
******************.***************

8. spacer 2.2|2325080|34|CP013845|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 1, identity: 0.971

tacaatatataatgataaaataaatcaattgaat	CRISPR spacer
tacaatatacaatgataaaataaatcaattgaat	Protospacer
*********.************************

9. spacer 2.2|2325080|34|CP013845|CRISPRCasFinder matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 2, identity: 0.941

tacaatatataatgataaaataaatcaattgaat	CRISPR spacer
tacaatatataatgacaagataaatcaattgaat	Protospacer
***************.**.***************

10. spacer 2.2|2325080|34|CP013845|CRISPRCasFinder matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 2, identity: 0.941

tacaatatataatgataaaataaatcaattgaat	CRISPR spacer
tacaatatataatgacaagataaatcaattgaat	Protospacer
***************.**.***************

11. spacer 1.2|2324664|34|CP013845|CRISPRCasFinder matches to MT774405 (CrAssphage cr115_1, complete genome) position: , mismatch: 8, identity: 0.765

aaagaatataaatattgaacattatgaaatctat	CRISPR spacer
gcatcatataaatattgaatattatcaaatacat	Protospacer
. *  **************.***** **** .**

12. spacer 1.2|2324664|34|CP013845|CRISPRCasFinder matches to JX415535 (Escherichia phage ECBP1, complete genome) position: , mismatch: 8, identity: 0.765

aaagaatataaatattgaacattatgaaatctat	CRISPR spacer
aagtagcatgaatattgaaaattatgaaatcact	Protospacer
**. *..**.********* ***********  *

13. spacer 1.2|2324664|34|CP013845|CRISPRCasFinder matches to MH669274 (Escherichia phage PD38, complete genome) position: , mismatch: 8, identity: 0.765

aaagaatataaatattgaacattatgaaatctat	CRISPR spacer
aagtagcatgaatattgaaaattatgaaatcact	Protospacer
**. *..**.********* ***********  *

14. spacer 1.2|2324664|34|CP013845|CRISPRCasFinder matches to KJ135004 (Enterobacteria phage Bp4, complete genome) position: , mismatch: 8, identity: 0.765

aaagaatataaatattgaacattatgaaatctat	CRISPR spacer
aagtagcatgaatattgaaaattatgaaatcact	Protospacer
**. *..**.********* ***********  *

15. spacer 1.2|2324664|34|CP013845|CRISPRCasFinder matches to NC_010180 (Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence) position: , mismatch: 9, identity: 0.735

aaagaatataaatattgaacattatgaaatctat	CRISPR spacer
taggaatataaatatagaccattatgaaagaatc	Protospacer
 *.************ ** **********    .

16. spacer 1.2|2324664|34|CP013845|CRISPRCasFinder matches to MN694536 (Marine virus AFVG_250M991, complete genome) position: , mismatch: 9, identity: 0.735

aaagaatataaatattgaacattatgaaatctat	CRISPR spacer
taaagatttaaatattaaacattatgaaaccata	Protospacer
 **..** ********.************.*

17. spacer 1.2|2324664|34|CP013845|CRISPRCasFinder matches to NZ_CP035189 (Bacillus licheniformis strain SRCM103914 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

aaagaatataaatattgaacattatgaaatctat	CRISPR spacer
acaagatataaataatgaacagtatgaaagaata	Protospacer
* *..********* ****** *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

97472 : 147507

Bacillus_phage(16.67%)

tRNA,transposase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN01724.1\|97472_97778_+\|transposase	transposase	NA	NA	NA	NA
AUN01725.1\|97777_98653_+\|transposase	transposase	A0A1B1P773	Bacillus_phage	5.9e-39	38.2
AUN01726.1\|98768_100106_-	MATE family efflux transporter	NA	NA	NA	NA
AUN01727.1\|100249_100822_+	uracil-DNA glycosylase	NA	NA	NA	NA
AUN01728.1\|101665_103603_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	3.0e-99	39.3
AUN01729.1\|103767_105273_+	hypothetical protein	NA	NA	NA	NA
AUN01730.1\|105423_106218_+	hydrolase TatD	NA	NA	NA	NA
AUN01731.1\|106445_107504_+	hypothetical protein	A0A1B1SGK5	Bacillus_phage	5.3e-18	51.9
AUN01732.1\|107576_108122_+	ribonuclease M5	NA	NA	NA	NA
AUN01733.1\|108114_108951_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase	E4ZFQ0	Streptococcus_phage	4.1e-21	36.0
AUN01734.1\|109029_110325_+	hypothetical protein	NA	NA	NA	NA
AUN05096.1\|110483_111071_+	hypothetical protein	NA	NA	NA	NA
AUN01735.1\|111238_112072_+	hypothetical protein	NA	NA	NA	NA
AUN01736.1\|112239_113301_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
AUN01737.1\|113311_114007_+	macrolide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.8e-38	36.4
AUN01738.1\|114003_115212_+	macrolide ABC transporter permease	NA	NA	NA	NA
AUN01739.1\|115293_116136_+	sodium:proton antiporter	NA	NA	NA	NA
AUN01740.1\|116281_116473_+	(Fe-S)-binding protein	NA	NA	NA	NA
AUN01741.1\|116917_117094_-	hypothetical protein	NA	NA	NA	NA
AUN01742.1\|117171_118242_+	GGDEF domain-containing protein	G3MA91	Bacillus_virus	5.2e-13	33.3
AUN01743.1\|118298_119027_+	methyltransferase	G3MA03	Bacillus_virus	9.6e-19	39.4
AUN01744.1\|119316_121458_+	anaerobic ribonucleoside triphosphate reductase	A0A0A8WEK0	Clostridium_phage	1.7e-124	36.5
AUN01745.1\|121474_121990_+	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A2R2ZH61	Clostridioides_phage	1.2e-26	39.6
AUN01746.1\|122523_123201_-	hypothetical protein	NA	NA	NA	NA
AUN01747.1\|123202_123541_-	PadR family transcriptional regulator	NA	NA	NA	NA
AUN01748.1\|123662_124301_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
AUN01749.1\|124742_127859_+\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	2.7e-187	35.0
AUN01750.1\|128009_129008_+	catabolite control protein A	NA	NA	NA	NA
AUN01751.1\|129224_133277_+	DNA helicase	NA	NA	NA	NA
AUN01752.1\|133351_134419_+	mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	4.1e-26	30.8
AUN01753.1\|134754_136020_+	TIGR00299 family protein	NA	NA	NA	NA
AUN01754.1\|136024_136831_+	TIGR00268 family protein	NA	NA	NA	NA
AUN01755.1\|136850_137597_+	1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate carboxylase	A0A288TYA6	Enterococcus_phage	2.9e-18	43.2
AUN01756.1\|137821_139204_+	radical SAM protein	NA	NA	NA	NA
AUN01757.1\|139390_140665_+	sugar-binding protein	NA	NA	NA	NA
AUN01758.1\|140765_141881_-	glycosyl transferase	NA	NA	NA	NA
AUN01759.1\|142044_143055_+\|coat	spore coat protein	NA	NA	NA	NA
AUN01760.1\|143069_143264_+	hypothetical protein	NA	NA	NA	NA
AUN01761.1\|143290_144058_+\|coat	spore coat protein CotS	NA	NA	NA	NA
AUN01762.1\|144070_145084_+\|coat	spore coat protein	NA	NA	NA	NA
AUN01763.1\|145258_146386_-	glycosyl transferase	NA	NA	NA	NA
AUN01764.1\|146502_147507_+\|coat	spore coat protein S	NA	NA	NA	NA

DBSCAN-SWA_2

573634 : 580890

Clostridium_phage(42.86%)

bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN02131.1\|573634_574456_+\|bacteriocin	bacteriocin biosynthesis protein	A0A0A8WF62	Clostridium_phage	1.0e-21	46.1
AUN02132.1\|574588_574732_+	recombinase	H7BUU1	unidentified_phage	2.0e-05	59.5
AUN02133.1\|575312_575660_+	hypothetical protein	A0A0A7RTL9	Clostridium_phage	1.7e-29	60.5
AUN02134.1\|575678_575828_-	hypothetical protein	NA	NA	NA	NA
AUN02135.1\|575928_576198_+	hypothetical protein	A0A0A7RTH0	Clostridium_phage	1.3e-13	47.2
AUN02136.1\|576345_577155_+	hypothetical protein	A0A2I2L551	Orpheovirus	6.7e-45	41.0
AUN02137.1\|577563_577710_-	recombinase XerC	NA	NA	NA	NA
AUN02138.1\|578059_579436_+	phosphate starvation-inducible protein PhoH	A0A141HS37	Bacillus_phage	2.3e-106	44.3
AUN02139.1\|579885_580890_+	exopolysaccharide biosynthesis protein	A0A1P8CWN9	Bacillus_phage	5.6e-09	30.7

DBSCAN-SWA_3

1398851 : 1462691

Bacillus_phage(26.67%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN02875.1\|1398851_1399325_+\|tRNA	tRNA-specific adenosine deaminase	NA	NA	NA	NA
AUN02876.1\|1399708_1401904_+	DNA topoisomerase III	K7YVL8	Megavirus	4.3e-30	25.7
AUN02877.1\|1402215_1402821_+	manganese efflux pump MntP	NA	NA	NA	NA
AUN02878.1\|1402886_1403123_+	hypothetical protein	NA	NA	NA	NA
AUN02879.1\|1403815_1404469_+	transaldolase	A0A0E3HZT5	Synechococcus_phage	3.4e-47	46.8
AUN02880.1\|1404869_1406534_+	ribonuclease J	NA	NA	NA	NA
AUN02881.1\|1406838_1408191_+	sodium:alanine symporter family protein	NA	NA	NA	NA
AUN02882.1\|1408510_1409356_+	GGDEF domain-containing protein	NA	NA	NA	NA
AUN02883.1\|1409348_1411001_+	transcription factor	NA	NA	NA	NA
AUN02884.1\|1411006_1412269_+	glycosyl transferase family 2	A0A1V0SAH6	Catovirus	2.0e-08	38.5
AUN02885.1\|1412563_1414660_+	cellulose synthase	NA	NA	NA	NA
AUN02886.1\|1415074_1416169_+	hydrolase	G3MB53	Bacillus_virus	2.4e-53	39.5
AUN02887.1\|1416396_1416561_+	cytochrome C551	NA	NA	NA	NA
AUN02888.1\|1416881_1417685_+	hypothetical protein	NA	NA	NA	NA
AUN02889.1\|1417903_1418170_+	transcriptional regulator	NA	NA	NA	NA
AUN02890.1\|1418206_1420432_+	copper-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.6e-117	37.1
AUN02891.1\|1420554_1420770_+	heavy metal transport/detoxification protein	NA	NA	NA	NA
AUN02892.1\|1420884_1421190_+\|transposase	transposase	NA	NA	NA	NA
AUN02893.1\|1421189_1422065_+\|transposase	transposase	A0A1B1P773	Bacillus_phage	5.9e-39	38.2
AUN02894.1\|1422373_1424746_+	carbonate dehydratase	M1HM40	Paramecium_bursaria_Chlorella_virus	2.8e-35	24.8
AUN02895.1\|1424876_1425752_-\|transposase	transposase	A0A1B1P773	Bacillus_phage	5.9e-39	38.2
AUN02896.1\|1425751_1426057_-\|transposase	transposase	NA	NA	NA	NA
AUN02897.1\|1426473_1428192_+	thiamine ABC transporter permease	W8CYL7	Bacillus_phage	1.4e-63	32.9
AUN02898.1\|1428483_1429278_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AUN02899.1\|1429441_1429798_+	diguanylate cyclase	NA	NA	NA	NA
AUN02900.1\|1430228_1431122_+	fatty acid-binding protein DegV	A0A0N9SI50	Staphylococcus_phage	8.2e-12	29.9
AUN02901.1\|1431158_1431623_-	MFS transporter	NA	NA	NA	NA
AUN02902.1\|1432188_1432617_+	HIT family protein	NA	NA	NA	NA
AUN02903.1\|1432772_1433147_-	hypothetical protein	NA	NA	NA	NA
AUN02904.1\|1433474_1434233_+	prepilin peptidase	NA	NA	NA	NA
AUN02905.1\|1434832_1435960_+	hypothetical protein	NA	NA	NA	NA
AUN05123.1\|1436747_1438115_+	Trk system potassium transport protein TrkA	NA	NA	NA	NA
AUN02906.1\|1438111_1439557_+	potassium transporter KefA	NA	NA	NA	NA
AUN02907.1\|1440007_1440130_+	adenylosuccinate lyase	NA	NA	NA	NA
AUN02908.1\|1440110_1442678_+	helicase	A0A1X9SH08	Bradyrhizobium_phage	5.4e-16	34.0
AUN02909.1\|1444163_1445294_-	hypothetical protein	NA	NA	NA	NA
AUN02910.1\|1445308_1445683_-	GntR family transcriptional regulator	NA	NA	NA	NA
AUN02911.1\|1447609_1448197_+	rubrerythrin family protein	NA	NA	NA	NA
AUN02912.1\|1448492_1449956_+	cell wall-binding repeat 2 family protein	A0A2R2ZGK6	Clostridioides_phage	5.8e-07	26.2
AUN02913.1\|1450254_1452285_-	PTS glucose transporter subunit IICBA	A0A2I7SAJ6	Vibrio_phage	3.0e-09	42.9
AUN02914.1\|1452740_1453388_+	di-trans,poly-cis-decaprenylcistransferase	A0A076FI83	Aureococcus_anophage	2.9e-11	25.6
AUN02915.1\|1453562_1453847_+	hypothetical protein	NA	NA	NA	NA
AUN05124.1\|1453957_1454107_+	Fe-S oxidoreductase	NA	NA	NA	NA
AUN02916.1\|1454203_1454653_+	hypothetical protein	NA	NA	NA	NA
AUN02917.1\|1454934_1455348_+	transcriptional regulator	NA	NA	NA	NA
AUN02918.1\|1455557_1457444_+	carbon-monoxide dehydrogenase catalytic subunit	NA	NA	NA	NA
AUN02919.1\|1457590_1458034_+	4Fe-4S ferredoxin	NA	NA	NA	NA
AUN02920.1\|1458231_1459458_+	nitrate reductase	NA	NA	NA	NA
AUN02921.1\|1459499_1460474_-	EamA family transporter	NA	NA	NA	NA
AUN02922.1\|1460854_1461361_+	hypothetical protein	NA	NA	NA	NA
AUN02923.1\|1461415_1461730_+	hypothetical protein	NA	NA	NA	NA
AUN02924.1\|1461815_1462691_-\|transposase	transposase	A0A1B1P773	Bacillus_phage	5.9e-39	38.2

DBSCAN-SWA_4

1956036 : 1996797

Bacillus_phage(25.0%)

portal,integrase,transposase,capsid

attL 1950903:1950920|attR 2000810:2000827

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1950903:1950920	attL	NA	NA	NA	NA
AUN03341.1\|1956036_1956672_-\|integrase	integrase	NA	NA	NA	NA
AUN03342.1\|1956807_1957629_-	sporulation transcription factor Spo0A	W8CYM9	Bacillus_phage	4.1e-10	34.2
AUN03343.1\|1958057_1959284_-	SpoIVB peptidase	NA	NA	NA	NA
AUN03344.1\|1959705_1960602_-	homoserine O-succinyltransferase	NA	NA	NA	NA
AUN03345.1\|1960628_1961855_-	homoserine dehydrogenase	NA	NA	NA	NA
AUN03346.1\|1961894_1963175_-	O-acetylhomoserine aminocarboxypropyltransferase	NA	NA	NA	NA
AUN03347.1\|1963472_1965176_-	DNA repair protein RecN	NA	NA	NA	NA
AUN03348.1\|1965188_1965641_-	arginine repressor	NA	NA	NA	NA
AUN03349.1\|1965642_1966488_-	NAD(+) kinase	NA	NA	NA	NA
AUN03350.1\|1966487_1967309_-	TlyA family rRNA (cytidine-2'-O)-methyltransferase	NA	NA	NA	NA
AUN03351.1\|1967330_1969199_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
AUN03352.1\|1969199_1969769_-	hypothetical protein	NA	NA	NA	NA
AUN03353.1\|1970571_1971444_-	farnesyl-diphosphate synthase	NA	NA	NA	NA
AUN03354.1\|1971568_1971784_-	exodeoxyribonuclease 7 small subunit	NA	NA	NA	NA
AUN03355.1\|1971906_1973112_-	exodeoxyribonuclease VII large subunit	A0A2H4UVM9	Bodo_saltans_virus	4.6e-50	37.0
AUN03356.1\|1973182_1973614_-	N utilization substance protein B	NA	NA	NA	NA
AUN03357.1\|1973752_1974148_-	alkaline-shock protein	NA	NA	NA	NA
AUN03358.1\|1974229_1974754_-	stage III sporulation protein AH	NA	NA	NA	NA
AUN03359.1\|1974815_1975412_-	stage III sporulation protein AG	NA	NA	NA	NA
AUN03360.1\|1975550_1976141_-	stage III sporulation protein AF	NA	NA	NA	NA
AUN03361.1\|1976176_1977340_-	stage III sporulation protein AE	NA	NA	NA	NA
AUN03362.1\|1977348_1977732_-	stage III sporulation protein AD	NA	NA	NA	NA
AUN03363.1\|1977758_1977956_-	stage III sporulation protein AC	NA	NA	NA	NA
AUN03364.1\|1977998_1978517_-	stage III sporulation protein SpoAB	NA	NA	NA	NA
AUN03365.1\|1978553_1979477_-	stage III sporulation protein AA	NA	NA	NA	NA
AUN03366.1\|1979662_1980082_-	hypothetical protein	NA	NA	NA	NA
AUN03367.1\|1980122_1980680_-	elongation factor P	NA	NA	NA	NA
AUN03368.1\|1980768_1981212_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
AUN03369.1\|1981366_1981879_-	shikimate kinase	NA	NA	NA	NA
AUN03370.1\|1982017_1982506_-	hypothetical protein	NA	NA	NA	NA
AUN03371.1\|1982511_1982958_-	hypothetical protein	NA	NA	NA	NA
AUN05134.1\|1982974_1983664_-	hypothetical protein	NA	NA	NA	NA
AUN03372.1\|1983691_1984138_-	hypothetical protein	NA	NA	NA	NA
AUN03373.1\|1984116_1984557_-	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA
AUN03374.1\|1984553_1985000_-	type IV pilin	NA	NA	NA	NA
AUN03375.1\|1984980_1985433_-	peptidase	NA	NA	NA	NA
AUN03376.1\|1985641_1986046_-	pilin	NA	NA	NA	NA
AUN03377.1\|1986163_1986358_-	general secretion pathway protein	NA	NA	NA	NA
AUN05135.1\|1986406_1986520_-	ATP synthase subunit beta	NA	NA	NA	NA
AUN03378.1\|1986907_1987207_+\|capsid	capsid protein	NA	NA	NA	NA
AUN03379.1\|1987515_1989225_-	DUF2326 domain-containing protein	NA	NA	NA	NA
AUN03380.1\|1989215_1989449_-	hypothetical protein	NA	NA	NA	NA
AUN03381.1\|1989454_1990117_-\|portal	portal protein	NA	NA	NA	NA
AUN03382.1\|1990106_1990343_-	hypothetical protein	NA	NA	NA	NA
AUN03383.1\|1990571_1991426_-	hypothetical protein	A0A0M4S6X1	Salmonella_phage	5.1e-19	28.5
AUN03384.1\|1991458_1991920_-	resolvase	NA	NA	NA	NA
AUN03385.1\|1991922_1992393_-	hypothetical protein	NA	NA	NA	NA
AUN03386.1\|1992397_1992655_-	rRNA methyltransferase	NA	NA	NA	NA
AUN03387.1\|1992679_1993195_-	hypothetical protein	NA	NA	NA	NA
AUN03388.1\|1993319_1993694_-\|transposase	transposase	NA	NA	NA	NA
AUN03389.1\|1993693_1995667_-\|integrase	integrase	NA	NA	NA	NA
AUN03390.1\|1995666_1996797_-\|transposase	transposase	H7BW99	unidentified_phage	5.5e-05	25.3
2000810:2000827	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2000854 : 2046337

uncultured_Caudovirales_phage(41.94%)

tail,capsid,tRNA,head,integrase,portal

attL 2036855:2036871|attR 2049595:2049611

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN03397.1\|2000854_2001001_-	polysulfide reductase	A0A0A7RTH5	Clostridium_phage	1.8e-09	64.4
AUN03398.1\|2001000_2001201_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
AUN03399.1\|2001211_2003917_-	hypothetical protein	I1TJW8	Clostridium_phage	4.3e-80	36.7
AUN03400.1\|2003916_2005281_-	DUF2479 domain-containing protein	A0A0A7S181	Clostridium_phage	4.5e-86	78.5
AUN03401.1\|2005296_2006964_-	endopeptidase	A0A0A7RUI9	Clostridium_phage	1.6e-77	42.3
AUN03402.1\|2006963_2007641_-\|tail	phage tail protein	A0A0A7RWN1	Clostridium_phage	5.8e-42	41.1
AUN03403.1\|2007640_2010238_-\|tail	phage tail tape measure protein	A0A0A7RU22	Clostridium_phage	3.4e-82	62.6
AUN03404.1\|2010290_2010491_-	hypothetical protein	NA	NA	NA	NA
AUN03405.1\|2010490_2011030_-	hypothetical protein	NA	NA	NA	NA
AUN03406.1\|2011090_2011684_-	hypothetical protein	A0A1J1J8Y5	Escherichia_phage	2.3e-63	60.4
AUN03407.1\|2011683_2012028_-	AP endonuclease	NA	NA	NA	NA
AUN03408.1\|2012027_2012537_-	hypothetical protein	NA	NA	NA	NA
AUN03409.1\|2012537_2012969_-	chloramphenicol resistance protein	A0A0A8WJ92	Clostridium_phage	1.3e-39	56.6
AUN03410.1\|2012965_2013310_-\|capsid	capsid protein	F6K8R4	Clostridium_phage	1.0e-15	42.5
AUN03411.1\|2013309_2013720_-	hypothetical protein	NA	NA	NA	NA
AUN03412.1\|2013721_2013985_-	hypothetical protein	NA	NA	NA	NA
AUN03413.1\|2013985_2014168_-	hypothetical protein	NA	NA	NA	NA
AUN03414.1\|2014213_2015104_-\|capsid	capsid protein	A0A0H3U2U7	Staphylococcus_phage	1.4e-56	42.4
AUN03415.1\|2015121_2015715_-	hypothetical protein	A0A2H4J4P4	uncultured_Caudovirales_phage	3.0e-18	29.0
AUN03416.1\|2015811_2016468_-	hypothetical protein	NA	NA	NA	NA
AUN03417.1\|2016617_2017346_-\|head	phage head morphogenesis protein	NA	NA	NA	NA
AUN05136.1\|2017335_2018601_-\|portal	portal protein	A0A1V0DZW8	Clostridioides_phage	1.1e-115	52.6
AUN03418.1\|2018613_2020347_-	hypothetical protein	A0A1V0DZW7	Clostridioides_phage	5.1e-252	72.4
AUN05137.1\|2020363_2020975_-	hypothetical protein	A0A1L2JZ52	Aeribacillus_phage	2.8e-43	42.0
AUN03419.1\|2021136_2021328_-	hypothetical protein	NA	NA	NA	NA
AUN03420.1\|2021591_2022008_-	resolvase	A0A2H4J863	uncultured_Caudovirales_phage	2.4e-43	68.9
AUN03421.1\|2022127_2022559_-	RNA polymerase subunit sigma	A0A2H4J015	uncultured_Caudovirales_phage	4.5e-48	72.7
AUN03422.1\|2022937_2024803_-	DNA primase	A0A2H4J1M0	uncultured_Caudovirales_phage	0.0e+00	87.4
AUN03423.1\|2025355_2025685_-	nucleotide pyrophosphohydrolase	A0A2H4J7H8	uncultured_Caudovirales_phage	8.7e-44	79.4
AUN05138.1\|2025681_2025948_-	hypothetical protein	A0A2H4J4N1	uncultured_Caudovirales_phage	1.0e-31	81.6
AUN03424.1\|2026217_2026355_-	hypothetical protein	NA	NA	NA	NA
AUN03425.1\|2026707_2027265_-	hypothetical protein	C7BGG4	Burkholderia_phage	8.7e-12	31.4
AUN03426.1\|2027448_2029143_-	hypothetical protein	A0A2H4J041	uncultured_Caudovirales_phage	1.7e-292	84.6
AUN03427.1\|2029359_2029818_-	hypothetical protein	A0A2H4J1S8	uncultured_Caudovirales_phage	5.1e-58	68.2
AUN03428.1\|2029820_2030102_-	hypothetical protein	NA	NA	NA	NA
AUN03429.1\|2030101_2031892_-	NTP-binding protein	A0A2H4J7Q2	uncultured_Caudovirales_phage	2.7e-232	80.0
AUN03430.1\|2032069_2032873_-	hypothetical protein	A0A2H4J786	uncultured_Caudovirales_phage	1.4e-132	84.3
AUN03431.1\|2032865_2033195_-	hypothetical protein	NA	NA	NA	NA
AUN03432.1\|2033199_2033496_-	nuclease	A0A2H4J095	uncultured_Caudovirales_phage	5.1e-43	85.6
AUN03433.1\|2033495_2034311_-	hypothetical protein	A0A2H4J082	uncultured_Caudovirales_phage	5.6e-116	78.9
AUN05139.1\|2034311_2035604_-	helicase SNF2	A0A2H4J064	uncultured_Caudovirales_phage	3.1e-193	77.0
AUN03434.1\|2035802_2036096_-	histidine kinase	NA	NA	NA	NA
AUN03435.1\|2036099_2036819_-	hypothetical protein	E9LUL6	Lactobacillus_phage	1.2e-24	30.8
AUN03436.1\|2036834_2037164_-	hypothetical protein	NA	NA	NA	NA
2036855:2036871	attL	NA	NA	NA	NA
AUN03437.1\|2037164_2037368_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AUN03438.1\|2037575_2038088_+	transcriptional regulator	A0A0A7RTK4	Clostridium_phage	4.7e-12	29.5
AUN03439.1\|2038137_2038554_+	ImmA/IrrE family metallo-endopeptidase	I3VYZ2	Thermoanaerobacterium_phage	1.8e-06	30.1
AUN03440.1\|2039112_2040183_+\|integrase	site-specific integrase	B3GVW7	Streptococcus_phage	4.2e-31	32.1
AUN03441.1\|2041424_2041553_-	hypothetical protein	NA	NA	NA	NA
AUN03442.1\|2041648_2042722_-	hypothetical protein	NA	NA	NA	NA
AUN03443.1\|2042722_2043544_-	diaminopimelate epimerase	NA	NA	NA	NA
AUN03444.1\|2043797_2045528_+	hypothetical protein	NA	NA	NA	NA
AUN03445.1\|2045596_2046337_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
2049595:2049611	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2649762 : 2725462

Clostridium_phage(50.0%)

protease,bacteriocin,tail,tRNA,capsid,terminase,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN03965.1\|2649762_2652402_-\|tRNA	alanine--tRNA ligase	A0A2K9L3D8	Tupanvirus	1.8e-62	32.8
AUN03966.1\|2652897_2653926_-	AI-2E family transporter	NA	NA	NA	NA
AUN03967.1\|2653938_2654427_-	photosystem reaction center subunit H	NA	NA	NA	NA
AUN03968.1\|2654607_2655036_-	iron-sulfur cluster assembly scaffold protein	A0A2H4N7M4	Lake_Baikal_phage	4.2e-30	54.5
AUN03969.1\|2655037_2656231_-	cysteine desulfurase NifS	H7BUW1	unidentified_phage	1.1e-43	42.1
AUN03970.1\|2656223_2656670_-	transcriptional regulator	NA	NA	NA	NA
AUN03971.1\|2656890_2658141_-	AAA family ATPase	A0A127AWE7	Bacillus_phage	3.7e-87	42.5
AUN03972.1\|2658308_2659076_-	histidinol-phosphatase	NA	NA	NA	NA
AUN03973.1\|2659210_2660119_-	transporter	NA	NA	NA	NA
AUN03974.1\|2660226_2661093_-	fatty acid-binding protein DegV	A0A0N9SI50	Staphylococcus_phage	7.4e-10	32.6
AUN03975.1\|2661420_2662005_+	SirA family protein	NA	NA	NA	NA
AUN03976.1\|2662191_2663181_-	ornithine cyclodeaminase family protein	A0A1V0SL93	Klosneuvirus	1.0e-15	26.3
AUN03977.1\|2663302_2664670_-	sodium:alanine symporter family protein	NA	NA	NA	NA
AUN03978.1\|2665384_2666719_-	sodium:alanine symporter family protein	NA	NA	NA	NA
AUN03979.1\|2667095_2667749_+	hypothetical protein	NA	NA	NA	NA
AUN03980.1\|2667886_2668363_-	copper amine oxidase	NA	NA	NA	NA
AUN03981.1\|2668725_2672487_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.8e-28	23.4
AUN03982.1\|2672692_2674033_-	MATE family efflux transporter	NA	NA	NA	NA
AUN03983.1\|2674029_2676507_-	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	8.9e-48	38.6
AUN03984.1\|2676511_2676787_-	acyl carrier protein	NA	NA	NA	NA
AUN03985.1\|2676792_2678331_-	acyl-CoA synthetase	NA	NA	NA	NA
AUN03986.1\|2678347_2679358_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
AUN03987.1\|2679341_2680223_-	bact protein	NA	NA	NA	NA
AUN03988.1\|2680263_2682093_-	peptide synthetase	A0A2K9L3I8	Tupanvirus	1.2e-54	29.5
AUN03989.1\|2682133_2682646_-	N-acetyltransferase	NA	NA	NA	NA
AUN03990.1\|2682649_2682898_-	acyl carrier protein	NA	NA	NA	NA
AUN03991.1\|2682906_2683923_-	FAD synthetase	NA	NA	NA	NA
AUN03992.1\|2683919_2685113_-	hypothetical protein	NA	NA	NA	NA
AUN03993.1\|2685131_2685872_-	hypothetical protein	NA	NA	NA	NA
AUN03994.1\|2686337_2687339_-	ornithine carbamoyltransferase	NA	NA	NA	NA
AUN03995.1\|2687433_2688378_-	carbamate kinase	NA	NA	NA	NA
AUN03996.1\|2688941_2690183_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	4.7e-98	52.1
AUN03997.1\|2690356_2691127_+	hypothetical protein	NA	NA	NA	NA
AUN03998.1\|2691123_2691597_+	hypothetical protein	NA	NA	NA	NA
AUN03999.1\|2691677_2691947_-	hypothetical protein	NA	NA	NA	NA
AUN04000.1\|2692145_2692970_-	HAD family hydrolase	NA	NA	NA	NA
AUN04001.1\|2693083_2693560_+	hypothetical protein	NA	NA	NA	NA
AUN04002.1\|2693971_2698837_+	cytidyltransferase	NA	NA	NA	NA
AUN04003.1\|2698911_2700135_+	lactate dehydrogenase	NA	NA	NA	NA
AUN04004.1\|2700288_2701344_+	FMN reductase	NA	NA	NA	NA
AUN04005.1\|2701535_2702375_+	phosphatase	NA	NA	NA	NA
AUN04006.1\|2702904_2703138_-	hypothetical protein	NA	NA	NA	NA
AUN04007.1\|2703325_2703913_-	hypothetical protein	A0A0A7RUM7	Clostridium_phage	1.1e-09	31.6
AUN04008.1\|2704039_2704801_-	N-acetylmuramoyl-L-alanine amidase	I1TJX3	Clostridium_phage	3.4e-51	56.5
AUN04009.1\|2704842_2705016_-	hypothetical protein	NA	NA	NA	NA
AUN04010.1\|2705017_2705221_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
AUN04011.1\|2705479_2705776_-	hypothetical protein	J9QEB9	Clostridium_phage	1.3e-14	46.5
AUN04012.1\|2707055_2708213_-	hypothetical protein	A0A0C5AMZ5	Paenibacillus_phage	2.0e-63	33.9
AUN05159.1\|2708216_2708990_-\|tail	phage tail protein	E2ELJ6	Clostridium_phage	1.4e-44	44.0
AUN04013.1\|2709101_2713028_-\|tail	phage tail tape measure protein	M1PKM6	Streptococcus_phage	1.2e-91	52.0
AUN04014.1\|2713084_2713204_-	hemolysin	NA	NA	NA	NA
AUN05160.1\|2713317_2713710_-	RNA polymerase subunit sigma	A0A0A7RUF5	Clostridium_phage	1.6e-36	64.6
AUN04015.1\|2713767_2714349_-\|tail	phage tail protein	A0A0A7RUI3	Clostridium_phage	3.0e-79	73.2
AUN04016.1\|2714412_2714769_-\|head,protease	prohead protease	A0A0A7S158	Clostridium_phage	3.3e-49	82.8
AUN04017.1\|2714784_2715144_-	hypothetical protein	A0A0A7RUF1	Clostridium_phage	1.7e-48	84.7
AUN04018.1\|2715144_2715513_-\|head,tail	head-tail adaptor protein	A0A0A7RUH8	Clostridium_phage	6.3e-35	63.8
AUN04019.1\|2715502_2715796_-	hypothetical protein	A0A0A7RWM0	Clostridium_phage	2.9e-14	43.5
AUN05161.1\|2715880_2717113_-\|capsid	capsid protein	Q0SPK4	Clostridium_phage	4.1e-94	49.7
AUN04020.1\|2717186_2717912_-\|protease	Clp protease	A0A0A7RUD3	Clostridium_phage	3.7e-103	86.6
AUN04021.1\|2717904_2719155_-\|portal	phage portal protein	A0A0A7RUE7	Clostridium_phage	4.7e-183	79.5
AUN05162.1\|2719198_2719381_-	hypothetical protein	A0A0A7RUH2	Clostridium_phage	1.7e-12	70.4
AUN04022.1\|2719404_2721162_-\|terminase	terminase	A6M948	Geobacillus_virus	3.1e-119	43.2
AUN04023.1\|2721162_2721648_-\|terminase	terminase	A6M947	Geobacillus_virus	8.9e-21	42.0
AUN04024.1\|2721794_2722262_-	HNH endonuclease	Q0SPJ9	Clostridium_phage	8.0e-27	45.4
AUN04025.1\|2722362_2724156_-	hypothetical protein	NA	NA	NA	NA
AUN04026.1\|2724142_2724394_-	hypothetical protein	NA	NA	NA	NA
AUN04027.1\|2724374_2724968_-	hypothetical protein	NA	NA	NA	NA
AUN04028.1\|2724989_2725187_-	hypothetical protein	NA	NA	NA	NA
AUN04029.1\|2725216_2725462_-	hypothetical protein	A0A2H4J8H2	uncultured_Caudovirales_phage	2.3e-09	45.7

DBSCAN-SWA_7

3055782 : 3065242

Synechococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN04313.1\|3055782_3057282_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	5.5e-69	47.2
AUN04314.1\|3057507_3058125_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.9e-26	39.3
AUN04315.1\|3058251_3059247_-	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	4.5e-67	44.0
AUN04316.1\|3059307_3060756_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	4.0e-56	32.1
AUN04317.1\|3060847_3061552_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SLB8	Cyanophage	3.9e-41	43.7
AUN04318.1\|3061551_3062031_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	5.7e-28	49.4
AUN04319.1\|3062671_3065242_-	selenium-dependent xanthine dehydrogenase	A0A0P0IVM8	Acinetobacter_phage	2.4e-11	33.1

DBSCAN-SWA_8

3202099 : 3234111

Clostridium_phage(77.78%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN04446.1\|3202099_3204727_-	DNA polymerase I	F8WQ35	Bacillus_phage	7.9e-63	34.7
AUN04447.1\|3204744_3205869_-	chorismate synthase	A0A291AU41	Pandoravirus	6.9e-32	30.3
AUN04448.1\|3206267_3207047_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4J8A3	uncultured_Caudovirales_phage	2.7e-88	63.4
AUN04449.1\|3207193_3207388_-	hypothetical protein	NA	NA	NA	NA
AUN04450.1\|3207406_3207661_-	hypothetical protein	A0A0A7RTX0	Clostridium_phage	4.8e-26	70.9
AUN04451.1\|3207821_3208610_-	hypothetical protein	A0A0A7RU33	Clostridium_phage	4.7e-27	34.2
AUN04452.1\|3208642_3209467_-	carbohydrate-binding protein	A0A0A7RU33	Clostridium_phage	5.6e-15	28.4
AUN04453.1\|3210351_3211131_-	hypothetical protein	NA	NA	NA	NA
AUN04454.1\|3211133_3212051_-	hypothetical protein	NA	NA	NA	NA
AUN04455.1\|3212083_3213169_-	signal peptidase II	A0A0A7RU66	Clostridium_phage	3.0e-141	70.4
AUN04456.1\|3213180_3214179_-	hypothetical protein	A0A0A7RW91	Clostridium_phage	4.4e-139	72.0
AUN04457.1\|3214190_3214445_-	hypothetical protein	A0A0A7S0T0	Clostridium_phage	1.1e-33	81.0
AUN04458.1\|3214450_3216346_-	hypothetical protein	A0A0A7RU09	Clostridium_phage	4.3e-119	52.6
AUN04459.1\|3216360_3217599_-	hypothetical protein	A0A0A7RU28	Clostridium_phage	4.8e-196	81.1
AUN04460.1\|3217621_3218602_-	hypothetical protein	A0A0A7RU61	Clostridium_phage	1.0e-111	61.3
AUN04461.1\|3218603_3219953_-	hypothetical protein	A0A0A7RW86	Clostridium_phage	6.0e-75	74.1
AUN04462.1\|3219967_3220309_-	hypothetical protein	A0A0A7S0S4	Clostridium_phage	2.1e-16	55.7
AUN04463.1\|3220321_3221407_-	hypothetical protein	NA	NA	NA	NA
AUN04464.1\|3221393_3221828_-	hypothetical protein	NA	NA	NA	NA
AUN04465.1\|3221840_3223382_-	hypothetical protein	A0A0A7RU22	Clostridium_phage	5.8e-05	43.5
AUN05177.1\|3223545_3223713_-	hypothetical protein	A0A0A7RW80	Clostridium_phage	1.9e-15	70.4
AUN04466.1\|3223747_3224164_-	esterase	A0A0A7S0S0	Clostridium_phage	9.0e-46	71.2
AUN04467.1\|3224178_3225066_-	hypothetical protein	A0A0A7RTZ9	Clostridium_phage	8.2e-121	75.2
AUN04468.1\|3225070_3225490_-	hypothetical protein	A0A0A7RU17	Clostridium_phage	1.8e-57	71.9
AUN04469.1\|3225495_3225843_-	hypothetical protein	A0A0A7RU51	Clostridium_phage	4.3e-33	60.6
AUN04470.1\|3225847_3226213_-	hypothetical protein	A0A0A7RW73	Clostridium_phage	2.9e-32	54.5
AUN04471.1\|3226212_3226497_-	hypothetical protein	A0A0A7S0R4	Clostridium_phage	2.0e-25	61.2
AUN04472.1\|3227183_3227705_-	hypothetical protein	A0A0A7RVS1	Clostridium_phage	1.4e-35	50.0
AUN04473.1\|3227819_3228140_-	hypothetical protein	NA	NA	NA	NA
AUN04474.1\|3228196_3229045_-	DNA replication protein	S5W9L4	Leptospira_phage	3.0e-19	33.0
AUN04475.1\|3228986_3229901_-	hypothetical protein	A8ASN4	Listeria_phage	1.9e-40	39.5
AUN04476.1\|3229985_3230198_-	transcriptional regulator	NA	NA	NA	NA
AUN04477.1\|3230259_3230469_-	transcriptional regulator	NA	NA	NA	NA
AUN04478.1\|3230659_3231070_+	transcriptional regulator	A0A0A7RUJ5	Clostridium_phage	1.0e-09	56.2
AUN04479.1\|3231371_3231521_+	hypothetical protein	NA	NA	NA	NA
AUN04480.1\|3232623_3234111_+	membrane-bound O-acyltransferase family protein	A0A125RNP0	Pseudomonas_phage	7.4e-66	38.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP013844

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP013845

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection