CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025542	Pseudomonas fluorescens strain 2P24 chromosome, complete genome	2 crisprs	PD-DExK,DEDDh,DinG,csa3,cas3,WYL	1	1	6	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP025542_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025542_1

528191-528291

Orphan

Consensus_repeat	Method
GTGGGAGCGGGCTTGCTCGCGAAGGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025542_1

>merge|CP025542|1|528191-528291|CRISPRCasFinder
GTGGGAGCGGGCTTGCTCGCGAAGGCGGCCTAGTAGCCGGCCTGTCTCTTGCGGGTGTACCCCGATCCAACGGTGGGAGCGAGCTTGCTCGCGAAGGCGGC

>CP025542|1|1|528191-528291|CRISPRCasFinder
GTGGGAGCGGGCTTGCTCGCGAAGGCGGC	CTAGTAGCCGGCCTGTCTCTTGCGGGTGTACCCCGATCCAACG
GTGGGAGCGAGCTTGCTCGCGAAGGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
CP025542.1\|AUM67852.1\|528936_530853_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
CP025542.1\|AUM67847.1\|520008_520923_+\|lipase	unknown	unknown	gnl\|CDD\|369561
CP025542.1\|AUM67855.1\|534566_534986_-\|twin-arginine-translocase-subunit-TatB	unknown	unknown	gnl\|CDD\|166942
CP025542.1\|AUM67854.1\|533772_534570_-\|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|182840
CP025542.1\|AUM67853.1\|530991_532908_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
CP025542.1\|AUM67850.1\|524515_527086_+\|glucans-biosynthesis-glucosyltransferase-MdoH	unknown	unknown	gnl\|CDD\|225494
CP025542.1\|AUM67846.1\|517799_518603_+\|N-formylglutamate-deformylase	unknown	unknown	gnl\|CDD\|131072
CP025542.1\|AUM67858.1\|535633_536032_-\|phosphoribosyl-AMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234598
CP025542.1\|AUM67848.1\|521027_521999_+\|prolyl-aminopeptidase	unknown	unknown	gnl\|CDD\|130316
CP025542.1\|AUM72678.1\|522753_524523_+\|glucan-biosynthesis-protein-G	unknown	unknown	gnl\|CDD\|237328
CP025542.1\|AUM67844.1\|514843_516376_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
CP025542.1\|AUM67860.1\|537721_538339_-\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225706
CP025542.1\|AUM67843.1\|512197_513028_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226643
CP025542.1\|AUM67851.1\|527172_527514_-\|hypothetical-protein	unknown	unknown	unknown
CP025542.1\|AUM67857.1\|535308_535641_-\|phosphoribosyl-ATP-diphosphatase	unknown	unknown	gnl\|CDD\|179005
CP025542.1\|AUM67856.1\|534996_535284_-\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|234764
CP025542.1\|AUM67849.1\|521995_522433_+\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
CP025542.1\|AUM67845.1\|516585_517788_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
CP025542.1\|AUM67859.1\|536113_537718_-\|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB	unknown	unknown	gnl\|CDD\|235310
CP025542.1\|AUM67861.1\|538338_539109_-\|ubiquinone/menaquinone-biosynthesis-C-methyltransferase-UbiE	unknown	unknown	gnl\|CDD\|234689

Protein	Function_ID	Function_description	E-value
CP025542.1\|AUM67852.1\|528936_530853_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.43753e-78
CP025542.1\|AUM67847.1\|520008_520923_+\|lipase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	5.66007e-77
CP025542.1\|AUM67855.1\|534566_534986_-\|twin-arginine-translocase-subunit-TatB	gnl\|CDD\|166942	PRK00404, tatB, Sec-independent protein translocase subunit TatB.	2.43833e-60
CP025542.1\|AUM67854.1\|533772_534570_-\|twin-arginine-translocase-subunit-TatC	gnl\|CDD\|182840	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC.	4.91647e-116
CP025542.1\|AUM67853.1\|530991_532908_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.10821e-78
CP025542.1\|AUM67850.1\|524515_527086_+\|glucans-biosynthesis-glucosyltransferase-MdoH	gnl\|CDD\|225494	COG2943, MdoH, Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane].	0
CP025542.1\|AUM67846.1\|517799_518603_+\|N-formylglutamate-deformylase	gnl\|CDD\|131072	TIGR02017, hutG_amidohyd, N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate. [Energy metabolism, Amino acids and amines].	3.86749e-142
CP025542.1\|AUM67858.1\|535633_536032_-\|phosphoribosyl-AMP-cyclohydrolase	gnl\|CDD\|234598	PRK00051, hisI, phosphoribosyl-AMP cyclohydrolase; Reviewed.	1.60594e-81
CP025542.1\|AUM67848.1\|521027_521999_+\|prolyl-aminopeptidase	gnl\|CDD\|130316	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.	1.87916e-150
CP025542.1\|AUM72678.1\|522753_524523_+\|glucan-biosynthesis-protein-G	gnl\|CDD\|237328	PRK13274, mdoG, glucan biosynthesis protein G; Provisional.	0
CP025542.1\|AUM67844.1\|514843_516376_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
CP025542.1\|AUM67860.1\|537721_538339_-\|SCP2-domain-containing-protein	gnl\|CDD\|225706	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown].	1.17211e-56
CP025542.1\|AUM67843.1\|512197_513028_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	1.13147e-169
CP025542.1\|AUM67857.1\|535308_535641_-\|phosphoribosyl-ATP-diphosphatase	gnl\|CDD\|179005	PRK00400, hisE, phosphoribosyl-ATP diphosphatase.	1.60539e-52
CP025542.1\|AUM67856.1\|534996_535284_-\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|234764	PRK00442, tatA, twin-arginine translocase TatA/TatE family subunit.	6.29716e-51
CP025542.1\|AUM67849.1\|521995_522433_+\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	4.87575e-89
CP025542.1\|AUM67845.1\|516585_517788_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
CP025542.1\|AUM67859.1\|536113_537718_-\|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB	gnl\|CDD\|235310	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed.	0
CP025542.1\|AUM67861.1\|538338_539109_-\|ubiquinone/menaquinone-biosynthesis-C-methyltransferase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	7.75283e-149

>CP025542.1|AUM67851.1|527172_527514_-|hypothetical-protein
MYKVTPNPPEPETDPKKLQEAADRTLDYYLNPKQAKSENKPSPGQLFTVVDGIDTESLLANLSETLASADAMVNDLAFDLKGSRRHVALGILQLIELSGLLANRLLDSVNPRP
>CP025542.1|AUM67850.1|524515_527086_+|glucans-biosynthesis-glucosyltransferase-MdoH
MSNTPVQPETLSEYLAHLPMTDEQRAELAGCKSFSELHERLSSSTFDAPAEAAQASVGRRLTLSTAEELEDAEMLGLDASGRVCLKATPPIRRTKVVPEPWRTNILVRAWRRLTGRTNPPKPPKDERVLPHARWRTVGSTRRYILLILMLGQTIVAGWYMKGIMPYQGWSLVDLDEVLHQPLSQTATQVLPYALQTSILILFGILFCWVSAGFWTALMGFLELLTGHDKYRISGASAGNEPIPKDARTALVMPICNEDVPRVFAGLRATFESVAATGDLDRFDFFVLSDSNETDICVAEQQAWLDVCREAGGFGKIFYRRRRRRVKRKSGNLDDFCRRWGSDYKYMVVLDADSVMSGTCLTSLVRLMEATPDAGIIQTAPRASGMDTLYARMQQFATRVYGPLFTAGLHFWQLGESHYWGHNAIIRMKPFIEHCALAPLPGKGAFAGAILSHDFVEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRWCHGNLMNFRLFLVKGMHPVHRAVFLTGVMSYLSAPLWFFFLVLSTALLAVNTLMEPQYFLEPRQLYPLWPQWHPDKAIALFSTTIVLLFLPKLLSIVLIWAKGAKEFGGKFKVTLSMLLEMLFSMLLAPVRMIFHTRFVLAAFLGWAATWNSPQRDDDSTPWSEAVKRHGPQTLLGFFWALLVIWLNPSFLWWLVPIVGSLMLSIPVSVISSRVGLGLKSRDESLFLIPEEYAPPQELLSTDQYTHENRWHALNDGFIRAVVDPQQNALAYALATSRHGQAEPIEWLRVERVRHALKAGPAGLSNAERLALLSDPVALSRLHEQVWSEAHPEWLAAWRESVKADPHAPLLPLQPVSVQSQVA
>CP025542.1|AUM72678.1|522753_524523_+|glucan-biosynthesis-protein-G
MIVSPCNAPKMTAKRFRNALVAGSALLCLFGAGQLWAFSLDDVSAKAQELAGQKFEAPRSNLPNEFREMKFADYQKIRFRTEKAEWADQKTPFRLSFYHQGMHFDTPVKINEITATTVEEIKYDPSRFDFADVKFDPKATEQLGYAGFRVLYPINKADKQDEIMTMLGASYFRVIGKGQTYGLSARGMAIDTALPSGEEFPRFREFWIQRPKPTDKHLVIFALLDSPRATGAYRLTVRPGTDTVVDVKSRMFLRDRVTKLGVAPLTSMYLFGANQPSKVLNYRRELHDSSGLSIHAGNGEWIWRPLNNPKHLAVSNFSVENPRGFGLLQRGRDFSHYEDLDDRYDKRPSAWIEPKGDWGKGTVDLVEIPTADETNDNIVAFWSPEKLPEPGQPLDFSYRLHWTLDEASLHSPDSAWVKQTLRSTGDVKQSNLIRQPDGSVAYLVDFEGPSLQALPEDADVRSQVSVGENGEIVENSVRYNPETKGWRLTLRLKIKDSKQATEMRAALVRPLTPVEAPAASHSVTTTLAKADKVARQQTEKELAIEKAKDEAKAVKAADAAVEPTPTPQEPEPTEQVLTETWSYQLPADE
>CP025542.1|AUM67849.1|521995_522433_+|D-tyrosyl-tRNA(Tyr)-deacylase
MKGLLQRVRGARVEVSGEIVGAVDQGLLVLVAVEPGDTRASADKLLHKLLNYRVFSDADGKMNLSLADVGGGLLLVSQFTLAADTKSGLRPSFSTAAPPALGEELFNYLVTQAKQVHGTVASGRFGADMQVHLVNDGPVTFLLQA
>CP025542.1|AUM67848.1|521027_521999_+|prolyl-aminopeptidase
MQTLYPQIKPHARHDLAVDDTHTLYVDESGSPEGLPVVFIHGGPGAGCDAQSRRYFDPNLYRIVTFDQRGCGRSTPHASLENNTTWDLVEDLERIRKHLGIEKWVLFGGSWGSTLALAYAQTHPERVHGLILRGIFLCRPQEIEWFYQAGASRLFPDYWQDYIAPIPLDERDDLLSAFHKRLTGNDQIAQMHAAKAWSTWEGRTATLRPNPLVVDRFSEPQRALSIARIECHYFTNNAFLEPNQLIRDMGKIAHLPGVIVHGRYDVICPLDNAWELHQNWPNSELQVIRDAGHAASEPGITDALVRAAAQMARRLLDLPPEEA
>CP025542.1|AUM67847.1|520008_520923_+|lipase
MASYPLSEQMSAFIDKTLSFTSPDDSLAGLRQAYSQMCRAFTPPYPPTLVIEDFEWAGVGVRAYHPRRAAPPAGWPCILYLHGGGWVVGDLDSHDFICMELAATLGALVVAVDYRLAPEHPFPAGLDDCLAVWRHLAAAPFAIDPRRRLVVGDSAGGNLAAALCLALRDAGQPLPRSQVLIYPALAGPAPLPSRREHADAPLLSSHDLDSYHALYLGGVAPSPGAMPLLAEHLGGLPPALIVVAQWDPLHDDGALYSKRLNAAGGDAVLYVGEGLVHGCLRGRGLVPEVDQMYRTLLAYLADTL
>CP025542.1|AUM67846.1|517799_518603_+|N-formylglutamate-deformylase
MEKVLNFKQGRVPLLISMPHAGLRLTPAVKAGLIPEAQSLPDTDWHIPRLYEFANALGASTLAAEYSRFVVDLNRPSDDKPMYVGATTGLYPATLFDGVPLFRQGLKPSAEERATYLQQIWMPYHQALQQELARLKAEFGYALLFDAHSIRSVIPHLFDGKLPDFNLGTFNGASCDPTLANQLEAICARHDQFTHVLNGRFKGGHITRHYGNPAEDIHAVQLELCQSTYMEEFEPFNYRADLAEPTQVVLKQLLEGLLAWGQQAYKK
>CP025542.1|AUM67845.1|516585_517788_+|imidazolonepropionase
MKTLWQNCHAATMAQGVYSIIEDAAIVTQGEHIQWIGPRAELPTGDYPAVNDLKGAWVTPGLIDCHTHTVFGGNRSGEFEQRLQGVSYAEIAAAGGGIASTVRATRAASEEELFASAAKRLQSLMRDGVTTVEIKSGYGLDLASERKILRVIRRLGAELPVSVRSTCLAAHALPPEYKDRADDYIEHICTEMLPALAAEGLVDAVDAFCEYLAFSPAQVERVFITAQRLGLPVKLHAEQLSSLHGSSLAARYRALSADHLEFMTEEDAKAMAESGTVAVLLPGAFYFLRETQLPPMDALRKHGVKIAVASDLNPGTSPALSLRLMLNMACTCFRMTPEEALAGVTIHAAQALGMADTHGSLEAGKAADFVAWHIDRPADLAYWLGGDLEKRVVRHGAEID
>CP025542.1|AUM67844.1|514843_516376_+|histidine-ammonia-lyase
MTALNLIPGQLSLAQLRDIYQHPVTLSLDASASAQIEASVACVEQILAENRTAYGINTGFGLLASTRIASEDLENLQRSLVLSHAAGVGEPISDALVRLVMVLKVNSLSRGFSGIRRQVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEGKARYKGEWLPAVEALKVAGLAPLTLAAKEGLALLNGTQVSTAFALRGLFEGEDLFAGALALGSLTVEAVLGSRSPFDARIHAARGQKGQIDAAAAYRDLLGERSEVSDSHQNCDKVQDPYSLRCQPQVMGACLTQFRQAAEVLVIEANAVSDNPLVFAAEGDVISGGNFHAEPVAMAADNMALAIAEIGSLSERRISLMMDKHMSQLPPFLVANGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGILAVEWLAACQGLDLRGGLKTSAKLEQARSLLRAQVPFYEKDRFFAPDINAATELLASRRLNELVTAQLLPSL
>CP025542.1|AUM67843.1|512197_513028_+|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein
MSNAAISKIEVKNVFKIFGNRSKEALELIRQNKTKDQVLAETGCVVGVNDLSLSIGTGEIFVIMGLSGSGKSTLVRHFNRLIDPTSGAILVDGEDILQLDMDALREFRRHKISMVFQSFGLLPHKSVLDNVAYGLKVRGESKQVCAERALHWINTVGLKGYENKYPHQLSGGMRQRVGLARALAADTDIILMDEAFSALDPLIRAEMQDQLLELQKTLHKTIVFITHDLDEAVRIGNRIAILKDGKLIQVGTPREILHSPADEYVDRFVQRRAAVV
>CP025542.1|AUM67852.1|528936_530853_-|methyl-accepting-chemotaxis-protein
MFRWLAQGLGNVSVNRKLGAGFGLVLFLTLMIAFTGWSGLGNVISRGDKLGFIASLNDLSKDLNLASIDYNTTRGEKGPQSVNDLLGKLEEGLKTARLLIEQPADVALIDAQLAAVAEYKGAFAQMTRATVNREDARSKLGASADNAVARVTEVEKLLLQGGDVTLFNSVVTLSKAVQQARYQVRGYTYSGKSEAQQPALEAIDTVLKLLAQLPDQLPQEHAANLQQANDSFNLYRAAVAQFRDSQIDNAAALQRMSEQGQILIDASQKLTVSQTAVRDHDAAQAKTVLIVAAALALLFGVIAALFITRQIVGPLGQTLKVAERVAAGDLTHNLTSERRDELGQLQRAMQSMTVGLRQLIGGIGDGVTQIASAAEQLSAVTEQTSAGVNSQKVETDQVATAMHEMTATVQEVARNAEEASEAAVAADQQAREGDKVVGEAIAQIERLAKEVGNSTAAMGDLKRESDKIGSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKSTEEIAELIVGLQSGTEQVATIMDNSRSLTDSSVELTRRAGGSLENITRTVSAIQSMNQQIAAAAEQQSAVAEEINRSVLNVRDVSEQTASSSEKTAASSAELARLGVHLQTLVGRFRV
>CP025542.1|AUM67853.1|530991_532908_-|methyl-accepting-chemotaxis-protein
MFSWLTEKLGNVSVNRKLGFGFGLVLLMTLLSTFAGWNSLSSVISRADKQASIASLNELAKDLRVASLDYEMRRGEQGPATVSEFQGKLQESIQAALKRFVRPADQELLNQQLAILDEYKRAFADLTQATQNRESARSKLGANADNAVAKVTEVENALRQGDSVPQFNSVVELSKLLQQARYQVRGYTYSGKAEAEQPALDAIENVLKNLESLPGKLPEQHTANLQQASESMKAYRAAVSQFRDSQVSSASALKKMVDQDARLNALNSHLTTSQIEKRDQETAQAKETLIIVTILALAFGLLAAWIITRQIVGPLRQTLVALERVASGDLSQNLVVTRRDDMGQLQGSLQRMVIGLRQLIGGISDGVTQIASAAEQLSAVTEQTSAGVNSQKVETDQVATAMHEMTATVQEVARNAEEASEAAVAADQQAREGEKVVGEAIAQIERLSKEVGNSTEAMGHLKRESDKIGSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKSTEEIEELILGLQSGTEQVAATLDNSRNLTDSSVELTRRAGGSLENITRTVSAIQSMNQQIAAAAEQQSAVAEEINRSVVNVRDVSEQTASSSEETAASSAELARLGVHLQTLVGRFKV
>CP025542.1|AUM67854.1|533772_534570_-|twin-arginine-translocase-subunit-TatC
MSDIPENDQPMPLVSHLTELRTRLLRCVAAIFIIFAGLFAFTQQIYTFVSTPLRQYLPAGATMIATDVSSPFLTPLKLTMMVSLFLAIPVILHQIWGFIAPGLYKHEKRIAVPLLVSSILLFYTGMAFAYFLVFPLIFKFFAAATPAGVEMMTDITSYLDFVMTLFFAFGVAFEIPVAVVLLVWIGVVDVAYLKKIRPYVIIGCFVVGMILTPPDIFSQTLLAVPMWLLFEIGILFGGLVRKRREEEPEDQPVDDHNDQPPATQA
>CP025542.1|AUM67855.1|534566_534986_-|twin-arginine-translocase-subunit-TatB
MFGISFTELLLVGLVALLVLGPERLPGAARTAGLWIGRLKRSFNAIKQEVEREIGADDIRRQLHNEHILSLEQEARKIFTPTQQEPTPVQPAVEPTIAPQAPVDNTAPVVAEPAKPVEPAATVTTPAAPNDPTLPPRAP
>CP025542.1|AUM67856.1|534996_535284_-|twin-arginine-translocase-TatA/TatE-family-subunit
MGIFDWKHWIVILVVVVLVFGTKKLKNLGTDVGESIKGFRKAMNDDEKPADPTAAPAQPVQPAQPVHPQASQPVNAPHTIDVQAQKVEEPVRKDS
>CP025542.1|AUM67857.1|535308_535641_-|phosphoribosyl-ATP-diphosphatase
MSDTLIRLAQVLEERKGAAADSSYVASLYHKGLNKILEKVGEESVETIIAAKDAAISGDCSDVIYETADLWFHSLVMLAQLGQHPQAVLDELDRRFGLSGHVEKASRPSA
>CP025542.1|AUM67858.1|535633_536032_-|phosphoribosyl-AMP-cyclohydrolase
MKNWQDEIKWDADGLVPAIAQDHKTGRVLMMAWMNREALALTAAENRAIYWSRSRGKLWRKGEESGHVQHLHEMRLDCDGDVIILMVEQVGEIACHTGRQSCFYRVFENGDWKTVDPVLKDPHAIYSGHTHE
>CP025542.1|AUM67859.1|536113_537718_-|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB
MKLLAVRRLLRIQRVVIRYRLDDLLFALPLPWFLLALRFVLPWRWFPRRTLDLTRGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSKLSVALIEEQLGKKVSEVFSRFDVEPLASASVAQVHAAQLKSGEEVVVKVIRPGLKPIIAQDLAWLFILARAAERLSADARLLHPVDVVQDYEKTIYDELDLLREAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIQVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADMHPGNIFVSTVQPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPYLERWMRERVSPKTLLGNVQSQFEQLPHLANMTRDLLERMSQPHAHDPAPPWHRRKDDWFLRLLGAAHLGGGAMLAAGGPLSELGHWPAAIMVIVGLYLVVRR
>CP025542.1|AUM67860.1|537721_538339_-|SCP2-domain-containing-protein
MLLTGLLASVELGLNRVLRLDSTALARLAHLSGTVIAVDCRSPALRLFILPSDEGLMLAAHWEAEADCTLRAPASSLLSLALGKDKTAVLHSPEVELDGDSGVLLELAAILQDLELDWEYEVSRWIGPVATQLLSGHLRSRGRWYRQGFVSLGQNLSEYLAEESRTLVGQREAQARFNELDQVKLDLERLEARFERLSRSLETKR
>CP025542.1|AUM67861.1|538338_539109_-|ubiquinone/menaquinone-biosynthesis-C-methyltransferase-UbiE
MTDQRKGSDAEPTTHFGFKNVPESQKAEKVAEVFHSVAAKYDLMNDLLSGGMHRLWKRFAIELSGVRSGNRVLDIAGGTGDLTKKFSHIVGPTGQVVLADINESMLKVGRDRLLDLGVAGNVEFVQADAEKLPFPDNHFDCVTIAFGLRNVTHKEDALRSMLRVLKPGGRLLVLEFSKPTNALMSKAYDAYSFAFMPLMGKLITNDSESYRYLAESIRMHPNQETLKSMMVEAGFDRVTYHNMTAGIVALHRGIKP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP025542_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025542_2

981483-981588

Orphan

Consensus_repeat	Method
AAGGGGTGTCGTGAAGGGGTGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025542_2

>merge|CP025542|2|981483-981588|CRISPRCasFinder
AAGGGGTGTCGTGAAGGGGTGTTGCCGCTGTAACCCGCATGGTTACTGGGTTTCAGGCTATTCAGGGCGTCTTAGACAGGTTAAGGGGTGTCGTAAAGGGGTGTTG

>CP025542|2|2|981483-981588|CRISPRCasFinder
AAGGGGTGTCGTGAAGGGGTGTTG	CCGCTGTAACCCGCATGGTTACTGGGTTTCAGGCTATTCAGGGCGTCTTAGACAGGTT
AAGGGGTGTCGTAAAGGGGTGTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP025542.1\|AUM68203.1\|988674_988956_-\|hypothetical-protein	unknown	unknown	unknown
CP025542.1\|AUM68207.1\|994012_994837_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|223325
CP025542.1\|AUM68202.1\|987686_987935_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225848
CP025542.1\|AUM68204.1\|989083_991894_-\|4Fe-4S-ferredoxin	unknown	unknown	gnl\|CDD\|223354
CP025542.1\|AUM68205.1\|991890_992562_-\|lactate-utilization-protein	unknown	unknown	gnl\|CDD\|376839
CP025542.1\|AUM68209.1\|996944_997712_+\|transcriptional-regulator-PdhR	unknown	unknown	gnl\|CDD\|181879
CP025542.1\|AUM68192.1\|975384_976560_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
CP025542.1\|AUM68197.1\|979350_979584_+\|hypothetical-protein	unknown	unknown	unknown
CP025542.1\|AUM68190.1\|973730_974615_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176117
CP025542.1\|AUM68195.1\|978507_979125_+\|serine-recombinase	unknown	unknown	gnl\|CDD\|239736
CP025542.1\|AUM68193.1\|976961_977363_-\|hypothetical-protein	unknown	unknown	unknown
CP025542.1\|AUM68208.1\|994987_996682_-\|L-lactate-permease	unknown	unknown	gnl\|CDD\|182445
CP025542.1\|AUM68206.1\|992561_994016_-\|iron-sulfur-cluster-binding-protein	unknown	unknown	gnl\|CDD\|224062
CP025542.1\|AUM68194.1\|977504_978341_+\|hypothetical-protein	unknown	unknown	unknown
CP025542.1\|AUM68198.1\|979715_980132_-\|hypothetical-protein	unknown	unknown	unknown
CP025542.1\|AUM68196.1\|979125_979332_-\|hypothetical-protein	unknown	unknown	unknown
CP025542.1\|AUM68201.1\|986184_987690_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379041
CP025542.1\|AUM68210.1\|997858_998341_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
CP025542.1\|AUM68191.1\|974849_975401_-\|hypothetical-protein	unknown	unknown	unknown
CP025542.1\|AUM68199.1\|980675_981020_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP025542.1\|AUM68207.1\|994012_994837_-\|oxidoreductase	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	3.55521e-57
CP025542.1\|AUM68202.1\|987686_987935_-\|hypothetical-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	0.000302777
CP025542.1\|AUM68209.1\|996944_997712_+\|transcriptional-regulator-PdhR	gnl\|CDD\|181879	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR.	2.07175e-86
CP025542.1\|AUM68192.1\|975384_976560_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	8.20917e-34
CP025542.1\|AUM68205.1\|991890_992562_-\|lactate-utilization-protein	gnl\|CDD\|376839	pfam02589, LUD_dom, LUD domain. This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterized proteins. LutB and LutC are encoded by th conserved LutABC operon in bacteria. They are involved in lactate utilization and is implicated in the oxidative conversion of L-lactate into pyruvate.	5.77696e-41
CP025542.1\|AUM68204.1\|989083_991894_-\|4Fe-4S-ferredoxin	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	8.00551e-87
CP025542.1\|AUM68195.1\|978507_979125_+\|serine-recombinase	gnl\|CDD\|239736	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.	1.40518e-70
CP025542.1\|AUM68208.1\|994987_996682_-\|L-lactate-permease	gnl\|CDD\|182445	PRK10420, PRK10420, L-lactate permease; Provisional.	0
CP025542.1\|AUM68206.1\|992561_994016_-\|iron-sulfur-cluster-binding-protein	gnl\|CDD\|224062	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion].	0
CP025542.1\|AUM68190.1\|973730_974615_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176117	cd08426, PBP2_LTTR_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.39287e-50
CP025542.1\|AUM68201.1\|986184_987690_-\|hypothetical-protein	gnl\|CDD\|379041	pfam13148, DUF3987, Protein of unknown function (DUF3987). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	4.66453e-87
CP025542.1\|AUM68210.1\|997858_998341_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	5.44469e-84

>CP025542.1|AUM68199.1|980675_981020_-|hypothetical-protein
MSKVECQCCKKMMVPKVITSAPFYISGVPVGGHDPQSSVCPFCLSPKWMLTEHQALAAGKANAEFYGLMVLALVNIVAFVRFGELAGGIALAVSVATVFMRARMIRALRRRLGC
>CP025542.1|AUM68198.1|979715_980132_-|hypothetical-protein
MDSVRDIEERMISFLHSQDHVTPLDGHVLQPDGVRIADYLFFHRQAVVELKTLKIDPKDKILDGAKSLMESDDFPLIFGDYDLETAMKNTPGGQEHLNKIFSSATRMVEGCLEMPNNRSPPPRGCLALIPTPQGSRSY
>CP025542.1|AUM68197.1|979350_979584_+|hypothetical-protein
MRLYEFLQRLGARARILVVLKVKARRCTRTFKIVTLRVGPSLQKKLNFLLNFMMAMSIEGIAYNESRQAWRSAATLS
>CP025542.1|AUM68196.1|979125_979332_-|hypothetical-protein
MGEWSEERLIAHGKDVIQKMLPIVLKGAEKPSEADSHFFIKQFTELLEEGRLRGFDLRKVLKEIPRAR
>CP025542.1|AUM68195.1|978507_979125_+|serine-recombinase
MFIRAYLRASTEEQDAGRARASLEQFASDHNKVIASVYLENASGATADRPELLRLLKDARKGDVLLVESIDRLSRLSVEDWQKLKAAIDSKGLRIVALDLPTSHQGMQDTKGDEFTGRMLGAINSMLVEMMAAIARKDYEQRRERQAQGIEKAKAAGKYQGRPVDADLHKRVKELLEAGLGIRATARHANCSTTTVLRIKAIDEE
>CP025542.1|AUM68194.1|977504_978341_+|hypothetical-protein
MGSTSTVIRVSVLAAAVAFLVGCSANQSPKTVQLPEPKDVPKEKWSDAMHVLTAMGISGQRDVPIEMVGGVDRVSPTNSSGAGLGDAGLSAIGYVSPPSGMSGGAAAGIGLGLMLLGGSSDPARATQVVAWVPSDQAGSPEDASALALQKVEEVRRKIFSGGLSKLGMQTGQYPDGHTRSYATPADIFAERPIPFADTPAASPSFLASPRSYGPIFIRHNQFTLDAYKNDMTTSEAMLKASKYLPEWIYIYHPGQRLRKDSIPAAIFNQGRALYFVGK
>CP025542.1|AUM68193.1|976961_977363_-|hypothetical-protein
MEFRDIGNGRTFPPVAPNGRIYAVPVTQENQVEIFCLTPEGVIGSGVKANWAEITGFYYDEESWEIILRNYIGRGMRFRRGVPCGIVEDGCETFKTNIQGFAIPICVMNRIAFEQKNCIRPDGGSGLSKQPAA
>CP025542.1|AUM68192.1|975384_976560_-|site-specific-integrase
MGRDGRGVRAVSESSIEITFMYRGVRCRERISLKPTATNLKRAEQHKAAVEHAIANGTFDYAVTFPGSPRAAKFAPEASQETLAGFLTKWLAGKKQHVSSSTFEGYRKLVELRLVPALGPTLLVDLKRKTVRDWLNTLEVSNKTLSNIQSCLRSALNDAVDNEELIDINPLAGWTFSRKAQVKEDDVDPFSPEEQRAILATLDGQAKNLVQFALWTGMRTSELVALDWGDIDWLKGEAYVTRAMTQAAAGEAEVTKTLSGKRRIKLLAPAMEALVAQKAHTFLAGNEVFQNPRTLERWAGDQPIRKTLWAHAVKKAGVRYRRPYQTRHTYASMMLSAGEHPMWVAGQMGHSDWTMIARVYGRWMPSDDTQAGGKAESMWMVKKETMNDGTG
>CP025542.1|AUM68191.1|974849_975401_-|hypothetical-protein
MTELDRVMRGPMEDTRAIALLLHAKLESQALSIIYMAIDRAAWVISEKEEIDKNDFIAWAQKFLIADNEVDFSGLDLWAARCGLLHTGAAESRDYRKNGANLIYYKVKAEMAEEKVLTLIGEWLAELGVTPERVRFVDYFWLAHELIEALQRFEAWLGNEPEICARAAVKADRQISFHPLPRE
>CP025542.1|AUM68190.1|973730_974615_+|LysR-family-transcriptional-regulator
MQLYGVQSTALRYFLEVARCGSISEASVRLNVAASAVSRQIAKLELALDASLFERRARGMVLSEAGARLAAYARKSQLEAEQVVLEITELHGLQRGHVHVACSEGFALEYMPRSISAFRREYQGIHFTLEVCAPAEATEKVRSGEADLAMTFSLTPQKEIKVEHVLSGAIFAVVANSHPLAEREAVSLAELQPWPIALPKADTTIRQLFDICCGVQGLLFDPVLTTNYVAALYSFVREEGVISLASEMTLQKQVADKALRCIPILDEGMQARRIELQSMAGRNLPAAVSAFRDF
>CP025542.1|AUM68201.1|986184_987690_-|hypothetical-protein
MSTHEQIPSFLAEMPERVLASYLNPGILPKPLPSGVARVMPWHDELLPTALQEYVRDIAERTQCPPDFVGVALVVAVSTVVGRKFTIHPKQHDDWMVVPNQWGVIIGRPSAMKTPALKQAMLPLRNLESRERERYGQAQAEHKASSELLDMKRNAAKAKAKKLLGGGDEDAALAELNRLSSENQAPIQRRYIVNDSTVEKLGELLNENPNGLVLERDELGGWLATMQSEDGSVARAFYLECFDGNGSFTYDRIGRGTIFIESCCLSLIGGIQPSRIASLVNAAVSGELDDGLTQRLQLAVYPDDVREWRLVDRWPDTAAAERVEQLIDHLDRLPSEPRTALRFSPEAQEKFNVWYTGHMQQSRNEHLHPALQSHYLKLPKTIAGLALLFELIEGGREAVGPESTDRAIEWANYLMSHAQRLYGAAINAPLLGARLLLERQQKLPEPFTAREVRQKDWTGLGSQDAVNNALAVLAEHDFIVGYEVAGEKGGRPSTRYVWRKT
>CP025542.1|AUM68202.1|987686_987935_-|hypothetical-protein
MPTHAPKKYLISHTSLQHCFDKSRSGLEKLRETDPSFPRPIKFGPSKQSGVYFVVAEVEAWLERKISERDGVPLDLAEREDQ
>CP025542.1|AUM68203.1|988674_988956_-|hypothetical-protein
MKRSVLLGLFVTASMMASTSFAADKPDSLCETNIQTIENAKTQYQSAPDLNNRATTSVEKAKALKAEGKYEACVAETQQTILEIRKTSDGTNK
>CP025542.1|AUM68204.1|989083_991894_-|4Fe-4S-ferredoxin
MTLPASFLRDAQQLIPQTRRFDDPLSTLAFGTDASFYRLIPKLVVRVESEDEVIALLKLAQRDQVPVTFRAAGTSLSGQAISDSVLIVLGDNWNGREIREQGTQIRLQPGVIGAQANAWLAPFGRKIGPDPASINACKIGGIVANNASGMCCGTAQNTYHTLAGIRLVLADGTRLDTEDDASVAAFRTSHGELLERLATLGRETRANTELAARIRHKYRLKNTTGLSLNALVDFDEPVDILSHLLVGSEGTLGFISAVTYNTVIDHPNKASALIVFPDVETCCNAVTVLKSQPVSAVELLDRRSLRSVQDKPGMPDFVQHLSINACALLIESRAASSSLLQEQLTRIMASLAGFPVEKQVDFTEDPRENARLWAIRKDTFPAVGAVRKTGTTVIIEDVTFPVEQLAIGVNRLIELFDKHHYDEAILFGHALEGNLHFVFTQGFNNPEEVARYQAFMDDVAQLVAVEFGGSLKAEHGTGRNMAPFVELEWGSDAYQLMWQLKRLLDPNGILNPDVVLSEDPQIHLKHLKPLPAADEIVDKCIECGFCEPVCPSKDLTLSPRQRIVIWRDIQAKKRAGTDTTELERAYQYQGIDTCAATGLCAQRCPVGINTGELVKKLRSRDATKTKTADWIEGNFATTLQGARFALHVANGARMLLGAPRLAKLSASLTRLSKGQVPQWSNAMPQPEKAIRFSPAVSDERPRVVYLAACVSRVMGPAAGDKEQMSLYEKTQRLLEKAGYQVVFPDNVDSLCCGQPFASKGYVEQAEHKRQELIGALLHASRGGLDPIYCDTSPCTLRLVQDLGDVRLDLYDPVRFIRTHLMDRLDFTPQEAPIAVHVTCSTQHLGESQALIDLARKCSKNVVIPEGIHCCGFAGDKGFTTPELNAHSLRTLKDAVQHCSEGISTSRTCEIGLTQYGAIDYHGLVYLVDRVTQARVS
>CP025542.1|AUM68205.1|991890_992562_-|lactate-utilization-protein
MSAKDNILAKLRKSLTGATPVADNFDVDLVTQTYRYAPEERIPRLRKLMEAVHTEIHLTSGDDWPALLAQLLRDRQLPSLLIAPTTPHGQKITQFWANNPDLPTLKAYNRPVEEWKAELFNDTPASLTGTLGAIAATGSLILWPTREEPRLMSLVPPVHFALLKASEIRDNFYEVQQEFEWAQGMPTNALLVSGPSKTADIEQVLAYGAHGPKDLVVLILEDQ
>CP025542.1|AUM68206.1|992561_994016_-|iron-sulfur-cluster-binding-protein
MSTPTLIPTVAVQEDFRARAHKALDDTQLRNNFRSAMDSLMTKRATSFSDAHEREHLRVLGNAVRARALSKLPDLLEQLETNLTRNGVNVHWAETVDEANGIVLSIIRAHEARQVIKGKSMVSEEMEMNHFLEARDIECLESDMGEYIVQLDHEKPSHIIMPAIHKNAGQVASLFHDKLGVEYTKDVDQLIQIGRKVLRQKFFEADIGVSGVNFAVAETGTLLLVENEGNGRMSTTVPPVHIAVTGIEKVVENLRDVVPLLSLLTRSALGQPITTYVNMISGPRKPDELDGPQEVHLVLLDNGRSQAFADSELRQTLNCIRCGACMNHCPVYTRIGGHAYGEVYPGPIGKIITPHMVGLAKVPDHPSASSLCGACGEVCPVKIPIPALLRRLREENVKAPDSPNPVMRGQGSKYSPKERFIWNAWARLNSSPRLYRLFGFLATRLRALTPKNVGPWTQNHSAPKPAARSLHDLAREHLNQQGDR
>CP025542.1|AUM68207.1|994012_994837_-|oxidoreductase
MSELFYNAVPNATRVAPPLPEPRQYPSEKPRRVYLFGTCVVDLFYPEAGMDAIHLLEREGIRVDYPQGQSCCGQPAYTSGYTEQARTVARAQLALFAEDYPVVVPSGSCAGMLREHYADLFKDEPETLKQVQALAARTYELAEFLLFVCKVQLQDSGKPVKIALHTSCSARREMNTHLHGRALLAQLRNVERVEHSHESECCGFGGTFSVRMPDISGAMVADKTRALKESGAHQVVSADCGCLMNINGALEKQQEALRGQHLASFLWQRTGGAA
>CP025542.1|AUM68208.1|994987_996682_-|L-lactate-permease
MQTWQQLYSPLGSLGLSALAAVIPIVFFFLALAVFRLKGHVAGSITLALAIAVAIFAFNMPADMAFAAAGYGFAYGLWPIAWIIVAAVFLYKLTVKSGQFEVIRSSVLSITDDQRLQVLLIGFCFGAFLEGAAGFGAPVAITAALLVGLGFNPLYAAGLCLIANTAPVAFGALGIPIIVAGQVTGIDAFKIGAMTGRQLPLLSLFVPFWLVFMMDGLRGVRETWPAALVAGLSFAVTQYFTSNFIGPELPDITSALASLISLTLFLKVWQPKRTAGAQIAGATSSAAVTASAGGFGQPRSTVASPYSLGEIIKAWSPFLILTVLVTIWTLKPFKAMFAAGGSMYGWVFNFAIPHLDQMVIKVAPIVVNPTAIPAVFKLDPVSATGTAIFFSALISMLVLKINIKTGLTTFKETFFELRWPILSIGMVLAFAFVTNFSGMSSTMALVLAGTGAAFPFFSPFLGWLGVFLTGSDTSSNALFSSLQATTAHQIGVNDTLLVAANTSGGVTGKMISPQSIAVACAATGLVGKESDLFRFTLKHSLFFATIVGLITLAQAYWFTGMLVH
>CP025542.1|AUM68209.1|996944_997712_+|transcriptional-regulator-PdhR
MGFDQIRQRRLSDDIVERLEGMILEGTLKSGERLPAERVLAEQFGVSRPSLREAIQKLAAKGLLVSRQGGGNYVVESLGSTFSDPLLQLLESNPEAQRDLLEFRHTLEASCAYYAALRATDVDRERLTAAFDELQDCYSRHDEVSRAEEGAADARFHLAIAEASHNAVLLHTIRGLFDLLKRNVVTNIGGMYKQRSETRDMLISQHRELYQAIMDGHAEQAREVSSRHILYVQEVLEEVRQEVQRVARAERRKGM
>CP025542.1|AUM68210.1|997858_998341_-|SsrA-binding-protein-SmpB
MAKQKKHPTGTIAQNKKARHDYFIEQRFEAGMVLAGWEVKSLRAGKAQLVDSYVLLKDGEAWLLGSHITPLTTASTHVIADPVRSRKLLLNKRELEKLFASVQQKGYACVCTSLYWSKHLIKCEIALGKGKKEYDKRDTERERDAGRELQRAVRNKGKED

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP025542_4	4.1\|6220757\|49\|CP025542\|CRISPRCasFinder	6220757-6220805	49	CP025542.1	695939-695987	2	0.959
CP025542_4	4.1\|6220757\|49\|CP025542\|CRISPRCasFinder	6220757-6220805	49	CP025542.1	696011-696059	2	0.959
CP025542_4	4.1\|6220757\|49\|CP025542\|CRISPRCasFinder	6220757-6220805	49	CP025542.1	696181-696229	2	0.959
CP025542_4	4.1\|6220757\|49\|CP025542\|CRISPRCasFinder	6220757-6220805	49	CP025542.1	696253-696301	2	0.959
CP025542_4	4.1\|6220757\|49\|CP025542\|CRISPRCasFinder	6220757-6220805	49	CP025542.1	696325-696373	2	0.959
CP025542_4	4.1\|6220757\|49\|CP025542\|CRISPRCasFinder	6220757-6220805	49	CP025542.1	696469-696517	2	0.959
CP025542_4	4.1\|6220757\|49\|CP025542\|CRISPRCasFinder	6220757-6220805	49	CP025542.1	696541-696589	2	0.959

1. spacer 4.1|6220757|49|CP025542|CRISPRCasFinder matches to position: 695939-695987, mismatch: 2, identity: 0.959

acgaccgggagaaccaggccggctgtcaggccgccttcgcgagcaagcc	CRISPR spacer
acgaccgggagaactaggccggctatcaggccgccttcgcgagcaagcc	Protospacer
**************.*********.************************

2. spacer 4.1|6220757|49|CP025542|CRISPRCasFinder matches to position: 696011-696059, mismatch: 2, identity: 0.959

acgaccgggagaaccaggccggctgtcaggccgccttcgcgagcaagcc	CRISPR spacer
acgaccgggagaactaggccggctatcaggccgccttcgcgagcaagcc	Protospacer
**************.*********.************************

3. spacer 4.1|6220757|49|CP025542|CRISPRCasFinder matches to position: 696181-696229, mismatch: 2, identity: 0.959

acgaccgggagaaccaggccggctgtcaggccgccttcgcgagcaagcc	CRISPR spacer
acgaccgggagaactaggccggctatcaggccgccttcgcgagcaagcc	Protospacer
**************.*********.************************

4. spacer 4.1|6220757|49|CP025542|CRISPRCasFinder matches to position: 696253-696301, mismatch: 2, identity: 0.959

acgaccgggagaaccaggccggctgtcaggccgccttcgcgagcaagcc	CRISPR spacer
acgaccgggagaactaggccggctctcaggccgccttcgcgagcaagcc	Protospacer
**************.********* ************************

5. spacer 4.1|6220757|49|CP025542|CRISPRCasFinder matches to position: 696325-696373, mismatch: 2, identity: 0.959

acgaccgggagaaccaggccggctgtcaggccgccttcgcgagcaagcc	CRISPR spacer
acgaccgggagaactaggccggctctcaggccgccttcgcgagcaagcc	Protospacer
**************.********* ************************

6. spacer 4.1|6220757|49|CP025542|CRISPRCasFinder matches to position: 696469-696517, mismatch: 2, identity: 0.959

acgaccgggagaaccaggccggctgtcaggccgccttcgcgagcaagcc	CRISPR spacer
acgaccgggagaactaggccggctctcaggccgccttcgcgagcaagcc	Protospacer
**************.********* ************************

7. spacer 4.1|6220757|49|CP025542|CRISPRCasFinder matches to position: 696541-696589, mismatch: 2, identity: 0.959

acgaccgggagaaccaggccggctgtcaggccgccttcgcgagcaagcc	CRISPR spacer
acgaccgggagaactaggccggctctcaggccgccttcgcgagcaagcc	Protospacer
**************.********* ************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP025542_3	3.6\|4420375\|29\|CP025542\|PILER-CR	4420375-4420403	29	NC_002679	Mesorhizobium japonicum MAFF 303099 plasmid pMLa, complete sequence	345823-345851	6	0.793
CP025542_3	3.6\|4420375\|29\|CP025542\|PILER-CR	4420375-4420403	29	NZ_CP032687	Rhizobium sp. CCGE531 plasmid pRCCGE531b, complete sequence	466186-466214	6	0.793
CP025542_3	3.6\|4420375\|29\|CP025542\|PILER-CR	4420375-4420403	29	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	12223-12251	8	0.724

1. spacer 3.6|4420375|29|CP025542|PILER-CR matches to NC_002679 (Mesorhizobium japonicum MAFF 303099 plasmid pMLa, complete sequence) position: , mismatch: 6, identity: 0.793

ttctgcttggcgttgcaataggcgcgctg	CRISPR spacer
atctgattggcgttgccataggcgagaag	Protospacer
 **** ********** ******* *  *

2. spacer 3.6|4420375|29|CP025542|PILER-CR matches to NZ_CP032687 (Rhizobium sp. CCGE531 plasmid pRCCGE531b, complete sequence) position: , mismatch: 6, identity: 0.793

ttctgcttggcgttgcaataggcgcgctg	CRISPR spacer
atctggttggcgttgccataggcgagaag	Protospacer
 **** ********** ******* *  *

3. spacer 3.6|4420375|29|CP025542|PILER-CR matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 8, identity: 0.724

ttctgcttggcgttgcaataggcgcgctg	CRISPR spacer
cgacgcttggcgttgctacaggcgcgcaa	Protospacer
.  .************ *.******** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1299362 : 1404449

105

Pseudomonas_phage(39.58%)

holin,plate,tRNA,tail,lysis,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM68457.1\|1299362_1300181_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	3.9e-08	33.0
AUM68458.1\|1300323_1300728_-	Fe-S metabolism protein SufE	NA	NA	NA	NA
AUM68459.1\|1300724_1301930_-	cysteine desulfurase CsdA	Q2XUY6	environmental_halophage	2.0e-69	36.9
AUM68460.1\|1302055_1303090_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
AUM68461.1\|1303122_1303485_-	ArsC family reductase	NA	NA	NA	NA
AUM68462.1\|1303808_1305455_+	Na+/H+ antiporter	NA	NA	NA	NA
AUM68463.1\|1305553_1305805_+	hypothetical protein	NA	NA	NA	NA
AUM68464.1\|1305904_1306867_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AUM68465.1\|1307357_1308557_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
AUM68466.1\|1308674_1311377_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA
AUM68467.1\|1311421_1312204_-	type I methionyl aminopeptidase	NA	NA	NA	NA
AUM68468.1\|1312657_1313395_+	30S ribosomal protein S2	NA	NA	NA	NA
AUM68469.1\|1313590_1314454_+	elongation factor Ts	NA	NA	NA	NA
AUM68470.1\|1314666_1315410_+	UMP kinase	NA	NA	NA	NA
AUM68471.1\|1315406_1315964_+	ribosome recycling factor	NA	NA	NA	NA
AUM68472.1\|1315977_1316733_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	9.3e-17	37.3
AUM68473.1\|1316732_1317539_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
AUM68474.1\|1317535_1318726_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
AUM68475.1\|1318778_1320131_+	zinc metallopeptidase RseP	NA	NA	NA	NA
AUM68476.1\|1320205_1322581_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
AUM68477.1\|1322626_1323130_+	hypothetical protein	NA	NA	NA	NA
AUM68478.1\|1323133_1324189_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
AUM68479.1\|1324294_1324735_+	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	NA	NA	NA	NA
AUM68480.1\|1324731_1325508_+	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA
AUM68481.1\|1325510_1326641_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
AUM68482.1\|1326637_1327297_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	2.3e-27	39.2
AUM68483.1\|1327532_1331054_+	DNA polymerase III subunit alpha	A0A1C9LWZ5	Streptomyces_phage	6.0e-199	36.6
AUM68484.1\|1331203_1332151_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
AUM68485.1\|1332300_1333626_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
AUM68486.1\|1333900_1335532_+	CTP synthetase	A0A1J0FA14	Only_Syngen_Nebraska_virus	6.9e-158	53.3
AUM68487.1\|1335536_1336382_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.8e-48	42.4
AUM68488.1\|1336544_1337834_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.7e-135	59.0
AUM68489.1\|1338005_1338284_+	cell division protein FtsB	NA	NA	NA	NA
AUM68490.1\|1338280_1338988_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
AUM68491.1\|1339160_1340057_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUM68492.1\|1340165_1341278_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.2e-33	29.5
AUM68493.1\|1341286_1342132_+	S-formylglutathione hydrolase	NA	NA	NA	NA
AUM68494.1\|1342175_1342649_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AUM68495.1\|1342645_1343704_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
AUM68496.1\|1343691_1344441_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	7.5e-67	51.8
AUM68497.1\|1344440_1345118_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.7e-44	50.5
AUM68498.1\|1345329_1346175_+	peptigoglycan-binding protein LysM	A0A0S2SXL7	Bacillus_phage	8.3e-06	33.3
AUM68499.1\|1346281_1347289_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.6e-34	35.8
AUM68500.1\|1347649_1347859_+	hypothetical protein	NA	NA	NA	NA
AUM68501.1\|1347779_1348103_-	ferredoxin	NA	NA	NA	NA
AUM68502.1\|1348246_1350826_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	4.0e-27	22.1
AUM68503.1\|1351519_1351873_-	hypothetical protein	B5TK57	Pseudomonas_phage	4.9e-53	94.9
AUM72699.1\|1352488_1353223_+	transcriptional regulator	B5TK58	Pseudomonas_phage	3.9e-137	99.2
AUM68504.1\|1353768_1354197_+	hypothetical protein	NA	NA	NA	NA
AUM68505.1\|1354321_1354480_+	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	4.3e-17	85.4
AUM68506.1\|1354518_1355100_+	dockerin	NA	NA	NA	NA
AUM68507.1\|1355168_1355519_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	1.3e-50	87.0
AUM68508.1\|1355567_1356080_+	hypothetical protein	NA	NA	NA	NA
AUM68509.1\|1356083_1356695_+\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	7.8e-46	56.6
AUM68510.1\|1356706_1357039_+\|plate	phage baseplate protein	A0A2H4JI46	uncultured_Caudovirales_phage	1.9e-38	70.9
AUM68511.1\|1357035_1358031_+\|plate	baseplate J protein	A0A2H4JC04	uncultured_Caudovirales_phage	2.4e-113	65.3
AUM68512.1\|1358027_1358663_+\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	1.7e-48	57.1
AUM68513.1\|1360748_1361189_+	hypothetical protein	A0A2H4J924	uncultured_Caudovirales_phage	1.5e-06	51.0
AUM68514.1\|1361278_1361488_+	hypothetical protein	NA	NA	NA	NA
AUM68515.1\|1361490_1362657_+\|tail	phage tail protein	B0ZSG8	Halomonas_phage	1.2e-124	57.0
AUM68516.1\|1362656_1363163_+\|tail	phage tail protein	Q6R4W3	Vibrio_virus	3.4e-23	34.5
AUM68517.1\|1363323_1363890_+\|tail	phage tail assembly protein	B0ZSH0	Halomonas_phage	1.3e-26	38.0
AUM68518.1\|1364018_1366199_+\|tail	phage tail tape measure protein	A2I2Y1	Vibrio_virus	2.8e-29	34.3
AUM68519.1\|1366198_1366582_+	hypothetical protein	A2I2Y2	Vibrio_virus	4.0e-32	56.5
AUM68520.1\|1366574_1366787_+\|tail	phage tail protein	A0A2H4JGD9	uncultured_Caudovirales_phage	9.0e-18	62.9
AUM68521.1\|1367808_1367997_-	hypothetical protein	NA	NA	NA	NA
AUM68522.1\|1368086_1368653_+	hypothetical protein	B5TK65	Pseudomonas_phage	1.7e-87	84.5
AUM68523.1\|1368649_1368832_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	6.3e-28	100.0
AUM68524.1\|1368831_1370328_+\|tail	phage tail protein	B5TK67	Pseudomonas_phage	3.6e-270	96.4
AUM68525.1\|1370393_1370741_+\|tail	phage tail protein	B5TK68	Pseudomonas_phage	9.7e-62	99.1
AUM68526.1\|1370737_1371034_+	ArsR family transcriptional regulator	B5TK69	Pseudomonas_phage	2.1e-44	96.9
AUM68527.1\|1371164_1372739_+\|tail	phage tail protein	B5TK70	Pseudomonas_phage	3.0e-158	95.8
AUM68528.1\|1372725_1373964_+	hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	4.4e-205	89.8
AUM68529.1\|1373967_1375008_+\|plate	baseplate protein	B5TK72	Pseudomonas_phage	8.8e-191	97.1
AUM68530.1\|1375069_1375249_-	hypothetical protein	NA	NA	NA	NA
AUM68531.1\|1375524_1376034_+\|plate	phage baseplate assembly protein V	B5TK73	Pseudomonas_phage	9.5e-82	92.3
AUM68532.1\|1376033_1376432_+	hypothetical protein	B5TK74	Pseudomonas_phage	5.0e-70	97.7
AUM68533.1\|1376421_1377462_+\|plate	baseplate J protein	B5TK75	Pseudomonas_phage	7.4e-182	94.8
AUM68534.1\|1377449_1378049_+\|tail	phage tail protein	B5TK76	Pseudomonas_phage	5.7e-102	89.4
AUM72700.1\|1378542_1379208_+	hypothetical protein	A0A0R8UEH9	Sinorhizobium_phage	4.5e-23	64.4
AUM68535.1\|1379253_1379817_+	lysozyme	B5TK83	Pseudomonas_phage	4.6e-93	88.8
AUM68536.1\|1379798_1380335_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	3.1e-75	86.5
AUM68537.1\|1380405_1380906_+	damage-inducible protein CinA	B5TK85	Pseudomonas_phage	1.4e-82	94.0
AUM68538.1\|1380989_1382042_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.9e-109	61.4
AUM68539.1\|1382050_1382518_+	recombination regulator RecX	NA	NA	NA	NA
AUM68540.1\|1384121_1384316_+	hypothetical protein	NA	NA	NA	NA
AUM68541.1\|1384316_1384739_-	hypothetical protein	NA	NA	NA	NA
AUM68542.1\|1384923_1385670_+	DTW domain-containing protein	NA	NA	NA	NA
AUM68543.1\|1385883_1386537_+	DNA-binding response regulator	NA	NA	NA	NA
AUM68544.1\|1386609_1386972_+	diacylglycerol kinase	NA	NA	NA	NA
AUM68545.1\|1386976_1387963_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUM68546.1\|1388025_1388805_+	ferredoxin--NADP reductase	NA	NA	NA	NA
AUM68547.1\|1388872_1389064_+	hypothetical protein	NA	NA	NA	NA
AUM68548.1\|1389009_1389708_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
AUM68549.1\|1389968_1390430_-	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	5.0e-37	50.7
AUM68550.1\|1390487_1391198_-	RNA-binding protein	NA	NA	NA	NA
AUM68551.1\|1391280_1391754_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AUM68552.1\|1392037_1393378_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
AUM68553.1\|1393652_1395554_+	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	4.1e-77	34.3
AUM68554.1\|1395579_1395849_+	hypothetical protein	NA	NA	NA	NA
AUM68555.1\|1395814_1397104_-	virulence factor family protein	NA	NA	NA	NA
AUM68556.1\|1397103_1399746_-	hypothetical protein	NA	NA	NA	NA
AUM68557.1\|1400543_1401605_+	DNA polymerase IV	NA	NA	NA	NA
AUM68558.1\|1401762_1402716_-	hypothetical protein	NA	NA	NA	NA
AUM68559.1\|1402733_1404449_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_2

2190421 : 2232950

uncultured_Caudovirales_phage(59.46%)

holin,protease,head,terminase,capsid,plate,tRNA,integrase,tail,portal,lysis

attL 2183903:2183916|attR 2196413:2196426

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2183903:2183916	attL	NA	NA	NA	NA
AUM69193.1\|2190421_2191441_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
AUM69194.1\|2191543_2192635_+\|integrase	integrase	A0A2K8I325	Pseudomonas_phage	9.3e-151	71.8
AUM69195.1\|2193372_2193642_-	Pyocin activator protein PrtN	A0A2K8HN48	Pseudomonas_phage	5.8e-22	61.4
AUM69196.1\|2193638_2195381_-	cytosine methyltransferase	Q5QF27	Pseudomonas_virus	3.9e-151	44.8
AUM69197.1\|2195377_2195629_-	hypothetical protein	NA	NA	NA	NA
AUM69198.1\|2195625_2196168_-	phosphohydrolase	A0A2D1GNL9	Pseudomonas_phage	3.8e-28	42.7
AUM69199.1\|2196164_2196386_-	hypothetical protein	NA	NA	NA	NA
AUM69200.1\|2196382_2196799_-	hypothetical protein	NA	NA	NA	NA
2196413:2196426	attR	NA	NA	NA	NA
AUM69201.1\|2196842_2197172_-	transcriptional regulator	NA	NA	NA	NA
AUM69202.1\|2197164_2197344_-	hypothetical protein	NA	NA	NA	NA
AUM69203.1\|2197330_2197615_-	DNA-binding protein	NA	NA	NA	NA
AUM69204.1\|2197625_2198210_-	hypothetical protein	NA	NA	NA	NA
AUM69205.1\|2198491_2199166_-	hypothetical protein	NA	NA	NA	NA
AUM72727.1\|2199152_2200223_-	hypothetical protein	NA	NA	NA	NA
AUM69206.1\|2200730_2201462_-	peptidase S24	A8CGC0	Salmonella_phage	3.8e-31	38.2
AUM69207.1\|2201541_2201802_+	hypothetical protein	A0A2H4J0V8	uncultured_Caudovirales_phage	6.9e-12	50.7
AUM69208.1\|2202092_2202653_+	hypothetical protein	NA	NA	NA	NA
AUM72728.1\|2202645_2202873_+	conjugal transfer protein TraR	A2I309	Vibrio_virus	7.6e-07	40.8
AUM69209.1\|2202862_2205082_+	conjugal transfer protein TraC	A0A2D1GN57	Marinobacter_phage	4.9e-191	47.2
AUM69210.1\|2205074_2205434_+	hypothetical protein	NA	NA	NA	NA
AUM69211.1\|2205946_2206291_+\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	3.1e-44	84.3
AUM69212.1\|2206438_2207041_+\|terminase	terminase small subunit	A0A2H4JG15	uncultured_Caudovirales_phage	4.5e-62	67.7
AUM69213.1\|2209058_2209265_+	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	4.0e-23	79.4
AUM69214.1\|2209264_2210746_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	4.4e-244	84.4
AUM69215.1\|2210742_2211903_+\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	4.6e-148	74.4
AUM69216.1\|2211899_2212244_+\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	3.7e-45	81.6
AUM69217.1\|2212305_2213301_+\|capsid	major capsid protein E	A0A2H4J890	uncultured_Caudovirales_phage	2.1e-165	85.5
AUM69218.1\|2213303_2213618_+	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	1.8e-30	59.6
AUM69219.1\|2213614_2214277_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	1.1e-77	66.1
AUM69220.1\|2214269_2214794_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	3.2e-48	54.1
AUM69221.1\|2214790_2215354_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	5.4e-62	62.2
AUM69222.1\|2215413_2215662_+	hypothetical protein	A0A2H4J885	uncultured_Caudovirales_phage	2.5e-11	54.5
AUM69223.1\|2215666_2215993_+\|plate	phage baseplate protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.1e-33	64.8
AUM69224.1\|2215989_2216874_+\|plate	baseplate assembly protein	A0A2H4JFK9	uncultured_Caudovirales_phage	4.0e-112	70.6
AUM69225.1\|2216870_2217476_+\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	8.7e-82	72.4
AUM69226.1\|2217472_2219410_+\|tail	phage tail protein	A4PE45	Ralstonia_virus	1.6e-73	56.7
AUM72729.1\|2219196_2219829_+	hypothetical protein	U5P083	Shigella_phage	3.3e-15	36.6
AUM69227.1\|2219920_2221084_+\|tail	phage tail protein	A0A2H4J869	uncultured_Caudovirales_phage	8.0e-185	82.6
AUM69228.1\|2221096_2221606_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	4.3e-66	70.1
AUM69229.1\|2221672_2221999_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AUM69230.1\|2222098_2224744_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	4.7e-71	36.1
AUM72730.1\|2224834_2225599_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	5.1e-87	64.0
AUM69231.1\|2225573_2225780_+\|tail	phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	1.3e-21	71.6
AUM69232.1\|2225846_2226170_+	hypothetical protein	NA	NA	NA	NA
AUM69233.1\|2226243_2227290_+	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	8.6e-146	73.6
AUM69234.1\|2227358_2227922_+	lysozyme	B5TK83	Pseudomonas_phage	1.6e-77	76.3
AUM69235.1\|2227903_2228446_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	5.8e-53	67.8
AUM69236.1\|2228595_2229390_+	restriction endonuclease subunit M	C7BGE1	Burkholderia_phage	4.6e-99	65.0
AUM69237.1\|2230021_2230717_-	hypothetical protein	A0A2H4J991	uncultured_Caudovirales_phage	9.9e-98	70.7
AUM69238.1\|2230737_2231025_-	hypothetical protein	NA	NA	NA	NA
AUM69239.1\|2231254_2231680_+	peptidase S24	A0A1W6JNS2	Morganella_phage	5.3e-17	43.0
AUM69240.1\|2231672_2232950_+	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.3e-111	51.0

DBSCAN-SWA_3

2803579 : 2809795

uncultured_Caudovirales_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM69717.1\|2803579_2804032_+	ribonuclease HI	J9Q745	Salmonella_phage	2.1e-40	56.3
AUM69718.1\|2804272_2805034_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.1e-36	38.5
AUM69719.1\|2805301_2805916_+	GNAT family N-acetyltransferase	E4ZFP7	Streptococcus_phage	4.3e-20	39.6
AUM69720.1\|2805881_2806775_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUM69721.1\|2806861_2807125_-	hypothetical protein	NA	NA	NA	NA
AUM69722.1\|2807309_2807867_+	ACP phosphodiesterase	A0A2P0ZL77	Lactobacillus_phage	1.0e-15	34.1
AUM69723.1\|2808123_2808474_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	2.7e-35	67.3
AUM69724.1\|2808511_2809795_+	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	3.0e-180	76.8

DBSCAN-SWA_4

4221004 : 4227290

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM72817.1\|4221004_4221397_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.5e-54	79.8
AUM70719.1\|4221397_4221760_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.9e-40	69.2
AUM70720.1\|4221759_4222053_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.8e-29	65.7
AUM70721.1\|4222049_4222385_+	sulfurtransferase TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	1.0e-44	80.2
AUM70722.1\|4222381_4223383_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.3e-162	83.8
AUM70723.1\|4223471_4224476_+	glutathione-dependent reductase	NA	NA	NA	NA
AUM70724.1\|4224614_4226009_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
AUM70725.1\|4226009_4227290_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.3e-98	53.9

DBSCAN-SWA_5

6093762 : 6156416

Lake_Baikal_phage(28.57%)

holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM72212.1\|6093762_6094269_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
AUM72213.1\|6094563_6095457_+	acyltransferase	NA	NA	NA	NA
AUM72214.1\|6096099_6096672_-	hypothetical protein	NA	NA	NA	NA
AUM72215.1\|6097140_6097353_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.0e-13	59.7
AUM72216.1\|6097475_6097679_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-18	65.7
AUM72217.1\|6097756_6097975_+	hypothetical protein	NA	NA	NA	NA
AUM72218.1\|6098058_6099258_-	formaldehyde dehydrogenase, glutathione-independent	A0A2K9L7I1	Tupanvirus	1.7e-12	29.7
AUM72219.1\|6099479_6100337_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
AUM72220.1\|6100503_6101136_-	sarcosine oxidase subunit gamma	NA	NA	NA	NA
AUM72221.1\|6101330_6104348_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA
AUM72222.1\|6104344_6104674_-	sarcosine oxidase subunit delta	NA	NA	NA	NA
AUM72223.1\|6104688_6105939_-	sarcosine oxidase subunit beta	NA	NA	NA	NA
AUM72224.1\|6105960_6107214_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	2.5e-99	52.7
AUM72225.1\|6107517_6108222_-	conjugal transfer protein TraX	NA	NA	NA	NA
AUM72226.1\|6108416_6109457_+	threonine aldolase	NA	NA	NA	NA
AUM72227.1\|6109657_6109918_+	hypothetical protein	NA	NA	NA	NA
AUM72228.1\|6110110_6111211_-	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AUM72877.1\|6111253_6111439_+	protein GbcA	NA	NA	NA	NA
AUM72229.1\|6111495_6112791_+	Rieske (2Fe-2S) protein	NA	NA	NA	NA
AUM72878.1\|6114169_6116038_-	hypothetical protein	NA	NA	NA	NA
AUM72230.1\|6116203_6119656_-\|holin	choline dehydrogenase	NA	NA	NA	NA
AUM72231.1\|6120736_6121303_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AUM72232.1\|6121634_6122405_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
AUM72233.1\|6122420_6123641_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
AUM72234.1\|6123640_6125590_-	(Fe-S)-binding protein	NA	NA	NA	NA
AUM72235.1\|6125760_6127821_-	N-methylproline demethylase	NA	NA	NA	NA
AUM72236.1\|6127836_6128367_-	hydrocarbon binding protein	NA	NA	NA	NA
AUM72237.1\|6128446_6129424_-	membrane dipeptidase	NA	NA	NA	NA
AUM72238.1\|6129659_6130061_+	hypothetical protein	NA	NA	NA	NA
AUM72239.1\|6130163_6130493_+	transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	1.0e-28	65.1
AUM72240.1\|6130597_6131374_+	DUF4239 domain-containing protein	NA	NA	NA	NA
AUM72241.1\|6131423_6131840_+	DUF3010 domain-containing protein	NA	NA	NA	NA
AUM72242.1\|6131736_6132027_-	hypothetical protein	NA	NA	NA	NA
AUM72243.1\|6132043_6133216_-	hypothetical protein	NA	NA	NA	NA
AUM72244.1\|6133386_6134436_-	hypothetical protein	NA	NA	NA	NA
AUM72245.1\|6134743_6135688_-	AraC family transcriptional regulator	NA	NA	NA	NA
AUM72246.1\|6135880_6136825_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
AUM72247.1\|6136896_6137784_+	NADPH:quinone reductase	NA	NA	NA	NA
AUM72248.1\|6137964_6138930_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
AUM72249.1\|6139056_6139533_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
AUM72250.1\|6139553_6140717_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
AUM72251.1\|6141087_6141351_+	hypothetical protein	NA	NA	NA	NA
AUM72252.1\|6141458_6142562_-	GlxA family transcriptional regulator	NA	NA	NA	NA
AUM72253.1\|6143134_6144511_-	L-serine ammonia-lyase	NA	NA	NA	NA
AUM72254.1\|6144936_6145884_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
AUM72255.1\|6145955_6146801_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
AUM72256.1\|6146797_6147976_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.5e-26	37.6
AUM72257.1\|6148352_6148973_+	transcriptional regulator BetI	NA	NA	NA	NA
AUM72258.1\|6149052_6150525_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
AUM72259.1\|6150742_6152446_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	5.0e-50	29.7
AUM72260.1\|6153621_6155064_+	peptidase C69	NA	NA	NA	NA
AUM72879.1\|6155078_6156416_+\|protease	Zn-dependent protease	NA	NA	NA	NA

DBSCAN-SWA_6

6500773 : 6556752

Ralstonia_phage(22.22%)

protease,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM72570.1\|6500773_6502108_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AUM72571.1\|6502123_6502630_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AUM72572.1\|6502698_6504222_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AUM72573.1\|6505751_6506258_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AUM72574.1\|6506260_6507757_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AUM72575.1\|6507967_6508456_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AUM72576.1\|6508537_6508993_+	hypothetical protein	NA	NA	NA	NA
AUM72577.1\|6508989_6509439_+	hypothetical protein	NA	NA	NA	NA
AUM72578.1\|6509432_6509945_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AUM72579.1\|6509941_6511801_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AUM72580.1\|6511764_6512817_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AUM72581.1\|6512809_6515488_+	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	5.2e-86	32.5
AUM72582.1\|6515645_6517586_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	4.8e-41	27.7
AUM72583.1\|6517631_6518165_-	hypothetical protein	NA	NA	NA	NA
AUM72584.1\|6519513_6519948_-	hypothetical protein	NA	NA	NA	NA
AUM72585.1\|6520196_6522128_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.6e-41	27.4
AUM72586.1\|6522146_6522581_+	DUF1795 domain-containing protein	NA	NA	NA	NA
AUM72587.1\|6522696_6522951_-	hypothetical protein	NA	NA	NA	NA
AUM72588.1\|6522995_6527390_+	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	2.8e-28	38.0
AUM72589.1\|6527403_6527877_+	SMI1/KNR4 family protein	NA	NA	NA	NA
AUM72590.1\|6528004_6528373_-	hypothetical protein	NA	NA	NA	NA
AUM72591.1\|6528996_6529356_+	hypothetical protein	B5TK57	Pseudomonas_phage	5.6e-28	60.5
AUM72592.1\|6529696_6529945_+	hypothetical protein	NA	NA	NA	NA
AUM72593.1\|6529900_6530542_-	hypothetical protein	NA	NA	NA	NA
AUM72897.1\|6530764_6531625_-	hypothetical protein	A0A1S6KZX9	Salmonella_phage	4.6e-68	47.7
AUM72594.1\|6531746_6532064_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
AUM72595.1\|6532006_6532396_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
AUM72596.1\|6532446_6533976_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	2.4e-120	48.5
AUM72597.1\|6533982_6534441_-	transcriptional regulator	NA	NA	NA	NA
AUM72598.1\|6534537_6535494_+	aromatic alcohol reductase	NA	NA	NA	NA
AUM72599.1\|6535997_6539879_-	hypothetical protein	NA	NA	NA	NA
AUM72600.1\|6540621_6541494_-	pyridoxal kinase	NA	NA	NA	NA
AUM72601.1\|6541613_6542036_+	DUF3301 domain-containing protein	NA	NA	NA	NA
AUM72602.1\|6543040_6543394_+	NADH:ubiquinone oxidoreductase	NA	NA	NA	NA
AUM72603.1\|6543390_6544041_-	DUF1826 domain-containing protein	NA	NA	NA	NA
AUM72604.1\|6544040_6545249_-	4-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
AUM72605.1\|6545391_6545757_+	glutamine synthetase	NA	NA	NA	NA
AUM72606.1\|6545899_6546796_+	GTP cyclohydrolase I FolE2	NA	NA	NA	NA
AUM72607.1\|6546792_6547461_+	manganese ABC transporter ATP-binding protein	NA	NA	NA	NA
AUM72898.1\|6547460_6548327_+	zinc ABC transporter permease	NA	NA	NA	NA
AUM72608.1\|6548338_6549214_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
AUM72609.1\|6549279_6549801_-	DUF3617 domain-containing protein	NA	NA	NA	NA
AUM72610.1\|6549942_6551382_+	cardiolipin synthase	NA	NA	NA	NA
AUM72611.1\|6551378_6552566_-	SAM-dependent methyltransferase	A0A2K9L0U7	Tupanvirus	3.6e-39	34.4
AUM72612.1\|6552749_6554669_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	9.0e-48	28.2
AUM72613.1\|6554665_6555718_-	hypothetical protein	NA	NA	NA	NA
AUM72614.1\|6555714_6556752_-\|protease	protease modulator HflC	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025542

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection