CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	2 crisprs	csa3,cas10,csm3gr7,cas1,cas2	0	12	3	1
CP024891	Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence	0 crisprs	csa3	0	0	1	0
CP024890	Rhodococcus ruber strain YYL chromosome, complete genome	2 crisprs	WYL,cas4,DEDDh,c2c9_V-U4,DinG,csa3,cas3,Cas9_archaeal	1	2	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP024892_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024892_1

198090-198405

TypeIII

Consensus_repeat	Method
GTTTCTGTGCCCGTAGGCGAATGGAGCACTGTCGAC	CRT
GTTTCTGTGCCCGTAGGCGAATGGAGCACTGTCGACC	PILER-CR

4 spacers

csm3gr7,cas1,cas2

The CRISPR arrays of CP024892_1

>merge|CP024892|1|198090-198405|CRT,PILER-CR
TTCTTCGTGCCCGTAGGCGAATGGAGCACTGTCGACGGTGACGCGATCTATACCCCGCAGGATGTCGTGTTTCTGGGCCCGTAGGCGAATGGAGCACTGTCGACGTATCCGGTGTGCAAGGACAGACCCGCGAACGAGTTTCTGTGCCCGTAGGCGAATGGAGCACTGTCGACCTCGGTCGAATGTGAGAACCTCACGTTCGGCAAGGTTTCTGTGCCCGTAGGCGAATGGAGCACTGTCGACCTGGAGTCATCCGCCGATAAAGGCGCAGGCTACATCGTTTCTGTGCCCGTAGGCGAATGGAGCACTGTCGACC

>CP024892|1|1|198090-198404|CRT
TTCTTCGTGCCCGTAGGCGAATGGAGCACTGTCGAC	GGTGACGCGATCTATACCCCGCAGGATGTCGT
GTTTCTGGGCCCGTAGGCGAATGGAGCACTGTCGAC	GTATCCGGTGTGCAAGGACAGACCCGCGAACGA
GTTTCTGTGCCCGTAGGCGAATGGAGCACTGTCGAC	CTCGGTCGAATGTGAGAACCTCACGTTCGGCAAG
GTTTCTGTGCCCGTAGGCGAATGGAGCACTGTCGAC	CTGGAGTCATCCGCCGATAAAGGCGCAGGCTACATC
GTTTCTGTGCCCGTAGGCGAATGGAGCACTGTCGAC

>CP024892|1|1|198158-198405|PILER-CR
GTTTCTGGGCCCGTAGGCGAATGGAGCACTGTCGACG	TATCCGGTGTGCAAGGACAGACCCGCGAACGA
GTTTCTGTGCCCGTAGGCGAATGGAGCACTGTCGACC	TCGGTCGAATGTGAGAACCTCACGTTCGGCAAG
GTTTCTGTGCCCGTAGGCGAATGGAGCACTGTCGACC	TGGAGTCATCCGCCGATAAAGGCGCAGGCTACATC
GTTTCTGTGCCCGTAGGCGAATGGAGCACTGTCGACC

Protein	Signature genes	Signature genes Name	Protein_function
CP024892.1\|AUM20279.1\|204819_205068_+\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20271.1\|191450_192233_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274009
CP024892.1\|AUM20270.1\|190972_191425_-\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20277.1\|202207_202474_+\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20265.1\|184126_184798_+\|hypothetical-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
CP024892.1\|AUM20281.1\|206406_206652_+\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20278.1\|202470_202767_+\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20272.1\|192242_194333_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274263
CP024892.1\|AUM20266.1\|184801_186535_+\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20282.1\|206818_207064_-\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20274.1\|195731_197786_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187878
CP024892.1\|AUM20276.1\|200665_200959_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP024892.1\|AUM20267.1\|186531_188073_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187857
CP024892.1\|AUM20323.1\|207208_207400_-\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20273.1\|194396_195533_-\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20268.1\|188069_188798_+\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20322.1\|201140_201937_-\|IS5/IS1182-family-transposase	unknown	unknown	gnl\|CDD\|379129
CP024892.1\|AUM20280.1\|205155_205884_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|153238
CP024892.1\|AUM20269.1\|188794_190924_+\|hypothetical-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
CP024892.1\|AUM20275.1\|199079_200648_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766

Protein	Function_ID	Function_description	E-value
CP024892.1\|AUM20274.1\|195731_197786_-\|hypothetical-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	0.00215633
CP024892.1\|AUM20275.1\|199079_200648_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.43931e-94
CP024892.1\|AUM20276.1\|200665_200959_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.39994e-15
CP024892.1\|AUM20267.1\|186531_188073_+\|hypothetical-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	8.86356e-05
CP024892.1\|AUM20322.1\|201140_201937_-\|IS5/IS1182-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	2.56419e-25
CP024892.1\|AUM20265.1\|184126_184798_+\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	0.0023981
CP024892.1\|AUM20272.1\|192242_194333_-\|hypothetical-protein	gnl\|CDD\|274263	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).	0.00331774
CP024892.1\|AUM20280.1\|205155_205884_-\|hypothetical-protein	gnl\|CDD\|153238	cd03144, GATase1_ScBLP_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.	5.11422e-12
CP024892.1\|AUM20269.1\|188794_190924_+\|hypothetical-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	7.71615e-32
CP024892.1\|AUM20271.1\|191450_192233_-\|hypothetical-protein	gnl\|CDD\|274009	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.0057536

>CP024892.1|AUM20274.1|195731_197786_-|hypothetical-protein
MALSVRAVAPSRVVLVCSEQTRVEAGRVEDLIGPSGVRVDIVVCGAGLDFAETYQRLWDGLSDLGVTASFLLDYTGGTAAMVAVAVAIHQRIHLAAGGDRPDLRFYQDESAGVLVCDLGFRFTLDVALTVAEMARVHGFGINTVRRSPSPAVSWGADPLWRRAFLDRSDQYEKVAASTVELRQALEPLFETYADTGCERRSDSSSVWVDDKSGRTRAGKSMELAVLAVVLGEAWDEVVFSCEVQYPEKSSAAAVTEFDVVVRRGHQVVVLEVKSSLHHVAESAGKRLAAARTVFGGATRVLSVSPQAKRDVDPDDVGGLEDLGGQWEPALAALGRWRRHVLTSARDQAVEDLAQVGAAAAEFLPPPSAARGFSWPPAPPSAVLGDPIPEPSGARSEIIPDEVRARALVAAVGGSPLAVDNALAVTTAATTLLGTRDVIRAYRPHLASRGGAEPVVHRIDGLDARSIGSECGRLAPATLAITPSTKAATAGMTAAAGQAGHDLLHVDIAGGWAVSWRHGRWPHRHRVRWESVSNPQYDTDVDETWWTRLEQAGHTNVVALQALLRKIDLPDGAEVRFSPMPEVPWLVPILVTGSWRALGVAVPADVGKADRSTVLACDQHVASAVGDVGRLLVALPLHAKQDPAKVRTRWSTLLRRAPGPLFAFWRSQLPDMILFEKGEVHRWLG
>CP024892.1|AUM20273.1|194396_195533_-|hypothetical-protein
MFHNIDVCVVSVDPEVLFTWCEQLGGDMYYDAEEAAEYRDRAYRLCLFGCPCSKHSALELPPHGEGFVAGPAARRRMTAALCSAVVDGVVVWDDAVRRRVCTVVRDALGDTPRLRAEGTSFTARPERILEAMGLQVGVIEVMRKLILGATGWRHSVPLAFFTGRCDTAAAAVYVADSVRASRRPSAAGASFLEAVSVRQIAEFVREGRAAIIAREPDRWAQLLTECAGWSARPLGSLTDGDDGGDDRQVLLRVDGEAGFVDPAEAVTGPQVPMLHERVEFEQDGYLAAAIEYLVDAAARNVDPVVSWLRGDADAAPPGDLVRWFDAARHGRRRKPAHRALRSVPVEHLPTVLEHSRDYLRASQPAYWEMLLRRARRCR
>CP024892.1|AUM20272.1|192242_194333_-|hypothetical-protein
MTVMMCTVGMNPAPVALAVLTCEPAPTRVLLVCSSGSRPVAAQLSVVMGALLPGTEFTLVPVGAGVSWRSCHRVLTEHAPAPPYRLDYTGGTTSMSMAAVTVHLERHDRVRDGGAALRSYVDEQSGVQVTDAGIATRLRTESVSIAVLAELHAAALAPTIVLAARDFPAVGDRVRLEALIEATRRAFEAHRITDEWLTAFGEVGMADVVEPILPTPEVSDSDRDGRFVELISLAAAVGCGQWDEIVFDGKEHRSQFDVLVRRGHRLVCIESKHRRIGDTRDDLGHRMSTTLSTFGGAARVHLHLLPRSQKDQDAATAFDAEIRSWKKTIPDLQRLQVIHTRTPAAPQAHLAPDASPPDPVTAMIGHLRRDLPAASAADGRGRLATPDSRDSPGTRTQPPLLNRGTVMTAVGGSEVLTALVADNEPVRTVVLVGPPSLLKPLAKGVLEGTSAAMIDIGDLSARSVWLAARNRRPETVIPTVSKKSAGAGLLRYAHECGAAIEHLLPRGSRELGSGAVVPMTTPPRWPALLTTEAGYRRHPRGTQAWPGQTHSLFDLPTLRTVVDHWARTDGVTVYISGDLRSRLVAPVVITHGFLAFAVTSYLVGDKPKWALARSFTAAQATVLEARFGPAIRTWVAMSEQVHRLSLLRDQVPEWTRLWQRLQMLSGVDEEHLQAPPWTIPELHRTIGTFLGIDTVE
>CP024892.1|AUM20271.1|191450_192233_-|hypothetical-protein
MVVPESVHIAIRTGKESCMFVFTRRRTDSSGTESGGEPTPRVDDARLGLDRVSGIGVVSVPNRWDRIRAVVAGHGDGRHGLLPDPECGHTQHTARIADEFGSTVDSEQLELTRRLSRIDELTERLTTEAAQLRVMVEALDGQVLGLREADERVEPSLDTRRRERDLMRRQAERQERVDKLDSRIRQIERDLAGVARMRSYQISACAQRIDRARVTRQQLIDVYWRWFVRTHPEESAVRAGYPIPSVDRPAVTAVVTPPRH
>CP024892.1|AUM20270.1|190972_191425_-|hypothetical-protein
MSLFTLRRQTDRKRAVRRIEIAMSAALPNTGVPTSTELCTAVEQRIEAYLAQGSIDDGCGHVLDTWLRTREGDAQAALQELIDQQRQVDDVLVDQARARADRAEQRYSRYRARADRYLAAAQDCRHRALGATAGTVVAAPEPVPAPDRAG
>CP024892.1|AUM20269.1|188794_190924_+|hypothetical-protein
MTAPYTFVDFRTPLPGSAFGDDTDAVFDRPVPGRHSGRIDLTITTLSPLFIGSADDSGGQPVLIAGVPAIPGSALKGMLRAYLAAMSGSSLGPQTDTVIWYRNPVADSRSPTLQAALQKYRVARGATAEPGSQRVGLLVRDPVHGHAVRECPQLRVPLPGRSTSFYSLVPRVTWRILSRDLAVRRHLTDPGLSARNDRRVFVVWAAVETTSDKGHGARSVRKVVFAVGGTAHDARRHAHARRDSGRTGESVPTTCRDTEFVSFLDDEGLYQYDADPDEPIAVEMILHATGLTAPDEPDPATDEQRNAYLFPIPDTVTAGWIADSGDGAHKKVTRVPVANSDVVTALTDDVQGQATDYHKQLPTVETLLAGDGVPVFFDTEITDGTEAVGRLGRGGGFRIRARKSFLDTIDARFREAGFDAGAPDLVQSLFGDSADDRAKKGRVSVGIAIAAPGAQLLSRQPDVVLLGPKIQAWYRYLHQLSSPHTDDPRTYDHADAAFRGRKMYLHRWHRNGQKDEQAWKALADRHRNRGNAGNRVGRTITPVAPRARFTGSIRFTNLTAAELGALIVVVTLGNDPRRNHGPNDNPHYAHLLGGGRALGLGSVHLASTVYLDHPGRYDTDTWDAPGHKADGDDLAGFVEEFRAKLHLAEPDQHQWAAGPDGRRWLRSIAEVFLVAQWHNRLPAAKTADMSLDDHRLRKIPQPLIDLFGS
>CP024892.1|AUM20268.1|188069_188798_+|hypothetical-protein
MNPSDTDGGPVIDGLRLDPLPTDTQSALLASLSGTGDRSWPAPGAAPVWWARIDQPNGYLVGRFQDGAWTLAGPDGHRVHGVDGPWDQIRVFQPGEEILLAHRTGRVRGVRRLRTPSPQSATSPHHRFLLVERSGAAAAPGAVFPVNRDAVTGLTAVIPEPRSGTSPLTMVVREHFTADPHSGAVRVAAVCWDRYSGGVSDPLLTEHAASLVPAAHGTAGTEQAPDSTRAPRRRWSLFGRKR
>CP024892.1|AUM20267.1|186531_188073_+|hypothetical-protein
MTVEQLRRQLAGAGGVPAVRTAVRIRGHVHVLSDTTIGGDESDQGADTRLDRDTVTGRPKWAGTGQAGALRHHLAAVLGDEYAARVFGDASADSPFRSTESLAYGPDGGYPPIDVRRGNHIDAATGVGVRGAVFTDEVLTAGAVFPVDWSVHAGADHLVEATAGFVRAVDGIRDESICLGLRRGKGRGAISATGWTVERHDLGTPGGFRSWHTRDRVPGWVAPEASTDLVAELDALIPGVAERVRQLRAIDLRKRLMIRMTLAVAELVHPGHDKPRVSRAATMVQSGTGRDHREDGALARAPLTRPTGTGGALSPVDSGTALHSMLKRHTGWVLHAIANSADDPGHAHHRADEILEALFGTIIRAGRRPATLRPSRVSVTESAVAGSSTVRLPHVRLNPLTQGAVDSALFFEDVLVGGHSEITVTVTRPRLHELGALAWVLRDLRDGVVSPMGAATTNGHGRRLLTAAALDVPAGVWGSEPHRFATLGDYAKSKGLRQAAAEALKQAVQKGHP
>CP024892.1|AUM20266.1|184801_186535_+|hypothetical-protein
MSVTFVVVTVVLRDRALITDGPAVSPHTLDHLPGSAVRGMLASVCRPDEIELLIADGAVESAPGLPVLSMRATHDAAEMIAAVAYPAPRTTVGIEDDWGGAELADARTIDTGPTTRLSPVAGLMVSSPDPEVAARPAAPSTSTHQRLHRGDTAPGPFTETVLEPGAGFEIRLRIADHVADPEPIVAALREVLTRPGLRIGSGADGAYGGKLTVLSIATAVDRPWSRPSPATAAGQPVHLVLVTPALVRNPHTGECDPAALARDVEETLSAAASSAVGAQIRVTVTEPAPSVGSVRVGGFHRGYRGLRPEHWAATAGSVVTVTLDTPLPGQVWDRILSHRIGERTVDGFGLLRIDPHPADWVEEAAPLHHTTGPGARLADGSEAPAVDHADPAVRLFRHTLFRHGADTAVPELAIRLARKTVRIPRHSTLSRIRVLVPSLSWDRDGAAGDLAAVHTLLTSYRREEGASDDTRPAADALTKCRIRWDTETTWSLFEFLHQLTAPDPDPALSILRRTRDPLDPYGEAMLPDLLAEHSLVTAHRAAREGDAASWIDDHHVSLRHALVATLIHALSTGKEQA
>CP024892.1|AUM20265.1|184126_184798_+|hypothetical-protein
MTGATVPPTELRIELLAPTVLGVASSDPLDVDLEVTTDPFGLPYLQRHRLSARLRDAALAASLAYPDILVPALDLLGAARGLGAGRRLQIGHARLPIAVQAAAAHAVHSEHASTGHEEIPRPLISRIRDAYTETLTSTALDDDAAPVTGTRRQVRAVRKGTVLSAPLLFTEEPPSPDHVWALALMCTAVEQIGSGAARGLGQVCCSLDGDRDRTHDLAFRTGA
>CP024892.1|AUM20275.1|199079_200648_+|CRISPR-associated-endonuclease-Cas1
MITRAVDGRLQSGSYGFRPGLGVDDAIDDLQQRIAAGQRWVVRTDIADCFGSVTRRGCMRALAEFVDDPELVELVGRRVDPRAAGAGAVGIPQGSPLSPVLLNIYLDGLDQDLWSHGIETIRYVDDLAIACDTREDALASLECVRAVLAHRSLQLHESKTTVVEADHGVTFLGRTVTGGELRPERELCRSPRITLHITSRGSALRARGTKFVITQNAATTVHPAPRTRMIVCHDRTLVSTAALTLAARHNVEVAIVDRHAGLAGFLSPAGTRYDTAHSQRTAQGDPEFVLHLARCVVEGKIANCLALLRRTPTRRRRVPADIHARLQHLRARCRETGTAPALLGVEGSAARLYYQALQMLIPQEYGFTGRRKRPPTDPVNAMLSYSYTVLLGEVTRAVQIAGLDPTQGFLHRPHRGRPSLALDLMEEFRPLIVDTTVLRSVATGAVRPSGFTTSDRDGCRMDGATKRVLVTELERRLLTVVTHPYLRRKVSYRECIELQARQVASLVASPETGSPYLPMSWR
>CP024892.1|AUM20276.1|200665_200959_+|CRISPR-associated-endonuclease-Cas2
MEAAVMPFALAMYDIASDRRRTRVADVLADSGPRVQLSVFELALTHPRGLSILCDKLTRIIDPRDDQIRIYTLPTMDAGRIVLGNRVLQERLPYLIL
>CP024892.1|AUM20322.1|201140_201937_-|IS5/IS1182-family-transposase
MSTRLVPDALWEIVEPLLPRFSPRPQGGGRAALDDRAVFTAVVYVLTSGCAWRHLPPSFGVSVPTAHRRFAAWAKAGVFDELHRQILDRLGAGGDLDWSAAILDAAHGPGEKGGSLTGPSPVDRGKNGSKIHILTDADGIPLVTAVTSANTHDSVMLQPMVAAIPAVRSRRGPRRRRPGRLRADKGYDYPVHRRWLRQRGIVPRIARRGVDSSERLGRYRWKIERTLAWLSGYRRLTMRYERHGEHFAAFLQLAAALTCFKKLAK
>CP024892.1|AUM20277.1|202207_202474_+|hypothetical-protein
MNRRTVTLAGVAIAAAATTIGVTTRFAPPEITDNTPATVHSVENLTEDLSDSQERAQNRMRDAGIDQGHAENAERRKVVLPHPPRFPR
>CP024892.1|AUM20278.1|202470_202767_+|hypothetical-protein
MSGTGRRPSAVRSYLVAARIGVGIAFVAPILWFVARYWWAYRTTDGIPTVLAQGMIAGIAATIEYALTNPAESLLYSIGMYLLWIFAVGRNHHHRKCR
>CP024892.1|AUM20279.1|204819_205068_+|hypothetical-protein
MSLASSSATSTTGHVGDEARLLGLDAARGVALLGMMAVHALLLVDDDGNPTTAFTLAAGRSAALFAVPTARPSATSSRSPPP
>CP024892.1|AUM20280.1|205155_205884_-|hypothetical-protein
MAGVGALALSGAAATWMGRDERAVALVYRGPASVPGCPEAVAALIDTGPIALRAVFCGPQEKVPLSSGTLAEAAVFAQPGGGTLREGWEHMRPYARAIREFTAPGGRYLGFCLGGYLAGATPGFALLPGDTARYIDTAGAAVRTPGETVVPVRWRNQRRHLFFQDGPVFRLGEDGVTVLARYDNGEIAAAVAGYGAGTVGVVGPHPEADRSWYRDGVVNPDGIRFDLGHDLIAAVMAGQSSG
>CP024892.1|AUM20281.1|206406_206652_+|hypothetical-protein
MFENTPRPRPEPGLVGVGARVLVRRPSDSAQTGRIVEDYAELTDTGERGHDWAPVHRWAVALDDGRLVFADTDDLTPTPGK
>CP024892.1|AUM20282.1|206818_207064_-|hypothetical-protein
MRGPLDDVASGRFADEARGVELLRDFDRRIVVEAMPEIAGRWAHRAGPGRKSPSAGHVRVARGMRELCHSFHERLDDCAGA
>CP024892.1|AUM20323.1|207208_207400_-|hypothetical-protein
MSMREVRLPVARWRALPDSEKVYRRRAAGVDHVIHSMAMDGEPVSDRWIDDARQRRQDALGRR

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Crispr_ID: CP024892_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024892_2

202838-203216

TypeIII-A

Consensus_repeat	Method
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC	CRISPRCasFinder
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC	PILER-CR
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC	CRT

5 spacers

cas2,cas1

The CRISPR arrays of CP024892_2

>merge|CP024892|2|202838-203216|CRISPRCasFinder,PILER-CR,CRT
GGATCTGCACTCGAAGGCCGGCGGAGCACTGTCGATACTGGACAAACGTTCAGTCCACCACACCCAAGTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGACTTTGGGCCTCGCTGGAATCAAGCTGGAGTGGCGTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGACCATATGGATCCGGCGGGCATCCGAGAGGCTATGTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGACCTGTGTGGGGTGAGGTCGCAGACCTGTACCCGTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGACATGGGTCACGAGCAATCAGGACTCATCAGCGTGGCAGGTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC

>CP024892|2|1|202838-203216|CRISPRCasFinder
GGATCTGCACTCGAAGGCCGGCGGAGCACTGTCGAT	ACTGGACAAACGTTCAGTCCACCACACCCAA
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC	TTTGGGCCTCGCTGGAATCAAGCTGGAGTGGC
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC	CATATGGATCCGGCGGGCATCCGAGAGGCTAT
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC	CTGTGTGGGGTGAGGTCGCAGACCTGTACCC
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC	ATGGGTCACGAGCAATCAGGACTCATCAGCGTGGCAG
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC

>CP024892|2|2|202905-203216|PILER-CR
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC	TTTGGGCCTCGCTGGAATCAAGCTGGAGTGGC
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC	CATATGGATCCGGCGGGCATCCGAGAGGCTAT
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC	CTGTGTGGGGTGAGGTCGCAGACCTGTACCC
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC	ATGGGTCACGAGCAATCAGGACTCATCAGCGTGGCAG
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC

>CP024892|2|2|202905-203216|CRT
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC	TTTGGGCCTCGCTGGAATCAAGCTGGAGTGGC
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC	CATATGGATCCGGCGGGCATCCGAGAGGCTAT
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC	CTGTGTGGGGTGAGGTCGCAGACCTGTACCC
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC	ATGGGTCACGAGCAATCAGGACTCATCAGCGTGGCAG
GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC

Protein	Signature genes	Signature genes Name	Protein_function
CP024892.1\|AUM20285.1\|210103_210781_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275056
CP024892.1\|AUM20283.1\|207799_208660_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
CP024892.1\|AUM20275.1\|199079_200648_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
CP024892.1\|AUM20270.1\|190972_191425_-\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20273.1\|194396_195533_-\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20277.1\|202207_202474_+\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20281.1\|206406_206652_+\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20278.1\|202470_202767_+\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20286.1\|210777_212613_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271175
CP024892.1\|AUM20272.1\|192242_194333_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274263
CP024892.1\|AUM20322.1\|201140_201937_-\|IS5/IS1182-family-transposase	unknown	unknown	gnl\|CDD\|379129
CP024892.1\|AUM20287.1\|212609_213755_-\|recombinase-XerD	unknown	unknown	gnl\|CDD\|271186
CP024892.1\|AUM20282.1\|206818_207064_-\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20274.1\|195731_197786_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187878
CP024892.1\|AUM20284.1\|209898_210084_-\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20276.1\|200665_200959_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP024892.1\|AUM20323.1\|207208_207400_-\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20279.1\|204819_205068_+\|hypothetical-protein	unknown	unknown	unknown
CP024892.1\|AUM20280.1\|205155_205884_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|153238
CP024892.1\|AUM20271.1\|191450_192233_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274009

Protein	Function_ID	Function_description	E-value
CP024892.1\|AUM20287.1\|212609_213755_-\|recombinase-XerD	gnl\|CDD\|271186	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain. This family includes putative Transposase A from transposon Tn554. It belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	2.2451e-25
CP024892.1\|AUM20274.1\|195731_197786_-\|hypothetical-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	0.00215633
CP024892.1\|AUM20283.1\|207799_208660_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.37616e-11
CP024892.1\|AUM20276.1\|200665_200959_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.39994e-15
CP024892.1\|AUM20271.1\|191450_192233_-\|hypothetical-protein	gnl\|CDD\|274009	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.0057536
CP024892.1\|AUM20322.1\|201140_201937_-\|IS5/IS1182-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	2.56419e-25
CP024892.1\|AUM20285.1\|210103_210781_-\|hypothetical-protein	gnl\|CDD\|275056	TIGR04211, hypothetical_protein, SH3 domain protein. Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.	7.46695e-07
CP024892.1\|AUM20272.1\|192242_194333_-\|hypothetical-protein	gnl\|CDD\|274263	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).	0.00331774
CP024892.1\|AUM20280.1\|205155_205884_-\|hypothetical-protein	gnl\|CDD\|153238	cd03144, GATase1_ScBLP_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.	5.11422e-12
CP024892.1\|AUM20286.1\|210777_212613_-\|hypothetical-protein	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.26786e-10
CP024892.1\|AUM20275.1\|199079_200648_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.43931e-94

>CP024892.1|AUM20278.1|202470_202767_+|hypothetical-protein
MSGTGRRPSAVRSYLVAARIGVGIAFVAPILWFVARYWWAYRTTDGIPTVLAQGMIAGIAATIEYALTNPAESLLYSIGMYLLWIFAVGRNHHHRKCR
>CP024892.1|AUM20277.1|202207_202474_+|hypothetical-protein
MNRRTVTLAGVAIAAAATTIGVTTRFAPPEITDNTPATVHSVENLTEDLSDSQERAQNRMRDAGIDQGHAENAERRKVVLPHPPRFPR
>CP024892.1|AUM20322.1|201140_201937_-|IS5/IS1182-family-transposase
MSTRLVPDALWEIVEPLLPRFSPRPQGGGRAALDDRAVFTAVVYVLTSGCAWRHLPPSFGVSVPTAHRRFAAWAKAGVFDELHRQILDRLGAGGDLDWSAAILDAAHGPGEKGGSLTGPSPVDRGKNGSKIHILTDADGIPLVTAVTSANTHDSVMLQPMVAAIPAVRSRRGPRRRRPGRLRADKGYDYPVHRRWLRQRGIVPRIARRGVDSSERLGRYRWKIERTLAWLSGYRRLTMRYERHGEHFAAFLQLAAALTCFKKLAK
>CP024892.1|AUM20276.1|200665_200959_+|CRISPR-associated-endonuclease-Cas2
MEAAVMPFALAMYDIASDRRRTRVADVLADSGPRVQLSVFELALTHPRGLSILCDKLTRIIDPRDDQIRIYTLPTMDAGRIVLGNRVLQERLPYLIL
>CP024892.1|AUM20275.1|199079_200648_+|CRISPR-associated-endonuclease-Cas1
MITRAVDGRLQSGSYGFRPGLGVDDAIDDLQQRIAAGQRWVVRTDIADCFGSVTRRGCMRALAEFVDDPELVELVGRRVDPRAAGAGAVGIPQGSPLSPVLLNIYLDGLDQDLWSHGIETIRYVDDLAIACDTREDALASLECVRAVLAHRSLQLHESKTTVVEADHGVTFLGRTVTGGELRPERELCRSPRITLHITSRGSALRARGTKFVITQNAATTVHPAPRTRMIVCHDRTLVSTAALTLAARHNVEVAIVDRHAGLAGFLSPAGTRYDTAHSQRTAQGDPEFVLHLARCVVEGKIANCLALLRRTPTRRRRVPADIHARLQHLRARCRETGTAPALLGVEGSAARLYYQALQMLIPQEYGFTGRRKRPPTDPVNAMLSYSYTVLLGEVTRAVQIAGLDPTQGFLHRPHRGRPSLALDLMEEFRPLIVDTTVLRSVATGAVRPSGFTTSDRDGCRMDGATKRVLVTELERRLLTVVTHPYLRRKVSYRECIELQARQVASLVASPETGSPYLPMSWR
>CP024892.1|AUM20274.1|195731_197786_-|hypothetical-protein
MALSVRAVAPSRVVLVCSEQTRVEAGRVEDLIGPSGVRVDIVVCGAGLDFAETYQRLWDGLSDLGVTASFLLDYTGGTAAMVAVAVAIHQRIHLAAGGDRPDLRFYQDESAGVLVCDLGFRFTLDVALTVAEMARVHGFGINTVRRSPSPAVSWGADPLWRRAFLDRSDQYEKVAASTVELRQALEPLFETYADTGCERRSDSSSVWVDDKSGRTRAGKSMELAVLAVVLGEAWDEVVFSCEVQYPEKSSAAAVTEFDVVVRRGHQVVVLEVKSSLHHVAESAGKRLAAARTVFGGATRVLSVSPQAKRDVDPDDVGGLEDLGGQWEPALAALGRWRRHVLTSARDQAVEDLAQVGAAAAEFLPPPSAARGFSWPPAPPSAVLGDPIPEPSGARSEIIPDEVRARALVAAVGGSPLAVDNALAVTTAATTLLGTRDVIRAYRPHLASRGGAEPVVHRIDGLDARSIGSECGRLAPATLAITPSTKAATAGMTAAAGQAGHDLLHVDIAGGWAVSWRHGRWPHRHRVRWESVSNPQYDTDVDETWWTRLEQAGHTNVVALQALLRKIDLPDGAEVRFSPMPEVPWLVPILVTGSWRALGVAVPADVGKADRSTVLACDQHVASAVGDVGRLLVALPLHAKQDPAKVRTRWSTLLRRAPGPLFAFWRSQLPDMILFEKGEVHRWLG
>CP024892.1|AUM20273.1|194396_195533_-|hypothetical-protein
MFHNIDVCVVSVDPEVLFTWCEQLGGDMYYDAEEAAEYRDRAYRLCLFGCPCSKHSALELPPHGEGFVAGPAARRRMTAALCSAVVDGVVVWDDAVRRRVCTVVRDALGDTPRLRAEGTSFTARPERILEAMGLQVGVIEVMRKLILGATGWRHSVPLAFFTGRCDTAAAAVYVADSVRASRRPSAAGASFLEAVSVRQIAEFVREGRAAIIAREPDRWAQLLTECAGWSARPLGSLTDGDDGGDDRQVLLRVDGEAGFVDPAEAVTGPQVPMLHERVEFEQDGYLAAAIEYLVDAAARNVDPVVSWLRGDADAAPPGDLVRWFDAARHGRRRKPAHRALRSVPVEHLPTVLEHSRDYLRASQPAYWEMLLRRARRCR
>CP024892.1|AUM20272.1|192242_194333_-|hypothetical-protein
MTVMMCTVGMNPAPVALAVLTCEPAPTRVLLVCSSGSRPVAAQLSVVMGALLPGTEFTLVPVGAGVSWRSCHRVLTEHAPAPPYRLDYTGGTTSMSMAAVTVHLERHDRVRDGGAALRSYVDEQSGVQVTDAGIATRLRTESVSIAVLAELHAAALAPTIVLAARDFPAVGDRVRLEALIEATRRAFEAHRITDEWLTAFGEVGMADVVEPILPTPEVSDSDRDGRFVELISLAAAVGCGQWDEIVFDGKEHRSQFDVLVRRGHRLVCIESKHRRIGDTRDDLGHRMSTTLSTFGGAARVHLHLLPRSQKDQDAATAFDAEIRSWKKTIPDLQRLQVIHTRTPAAPQAHLAPDASPPDPVTAMIGHLRRDLPAASAADGRGRLATPDSRDSPGTRTQPPLLNRGTVMTAVGGSEVLTALVADNEPVRTVVLVGPPSLLKPLAKGVLEGTSAAMIDIGDLSARSVWLAARNRRPETVIPTVSKKSAGAGLLRYAHECGAAIEHLLPRGSRELGSGAVVPMTTPPRWPALLTTEAGYRRHPRGTQAWPGQTHSLFDLPTLRTVVDHWARTDGVTVYISGDLRSRLVAPVVITHGFLAFAVTSYLVGDKPKWALARSFTAAQATVLEARFGPAIRTWVAMSEQVHRLSLLRDQVPEWTRLWQRLQMLSGVDEEHLQAPPWTIPELHRTIGTFLGIDTVE
>CP024892.1|AUM20271.1|191450_192233_-|hypothetical-protein
MVVPESVHIAIRTGKESCMFVFTRRRTDSSGTESGGEPTPRVDDARLGLDRVSGIGVVSVPNRWDRIRAVVAGHGDGRHGLLPDPECGHTQHTARIADEFGSTVDSEQLELTRRLSRIDELTERLTTEAAQLRVMVEALDGQVLGLREADERVEPSLDTRRRERDLMRRQAERQERVDKLDSRIRQIERDLAGVARMRSYQISACAQRIDRARVTRQQLIDVYWRWFVRTHPEESAVRAGYPIPSVDRPAVTAVVTPPRH
>CP024892.1|AUM20270.1|190972_191425_-|hypothetical-protein
MSLFTLRRQTDRKRAVRRIEIAMSAALPNTGVPTSTELCTAVEQRIEAYLAQGSIDDGCGHVLDTWLRTREGDAQAALQELIDQQRQVDDVLVDQARARADRAEQRYSRYRARADRYLAAAQDCRHRALGATAGTVVAAPEPVPAPDRAG
>CP024892.1|AUM20279.1|204819_205068_+|hypothetical-protein
MSLASSSATSTTGHVGDEARLLGLDAARGVALLGMMAVHALLLVDDDGNPTTAFTLAAGRSAALFAVPTARPSATSSRSPPP
>CP024892.1|AUM20280.1|205155_205884_-|hypothetical-protein
MAGVGALALSGAAATWMGRDERAVALVYRGPASVPGCPEAVAALIDTGPIALRAVFCGPQEKVPLSSGTLAEAAVFAQPGGGTLREGWEHMRPYARAIREFTAPGGRYLGFCLGGYLAGATPGFALLPGDTARYIDTAGAAVRTPGETVVPVRWRNQRRHLFFQDGPVFRLGEDGVTVLARYDNGEIAAAVAGYGAGTVGVVGPHPEADRSWYRDGVVNPDGIRFDLGHDLIAAVMAGQSSG
>CP024892.1|AUM20281.1|206406_206652_+|hypothetical-protein
MFENTPRPRPEPGLVGVGARVLVRRPSDSAQTGRIVEDYAELTDTGERGHDWAPVHRWAVALDDGRLVFADTDDLTPTPGK
>CP024892.1|AUM20282.1|206818_207064_-|hypothetical-protein
MRGPLDDVASGRFADEARGVELLRDFDRRIVVEAMPEIAGRWAHRAGPGRKSPSAGHVRVARGMRELCHSFHERLDDCAGA
>CP024892.1|AUM20323.1|207208_207400_-|hypothetical-protein
MSMREVRLPVARWRALPDSEKVYRRRAAGVDHVIHSMAMDGEPVSDRWIDDARQRRQDALGRR
>CP024892.1|AUM20283.1|207799_208660_-|hypothetical-protein
MTEGSRGGRRREYASDADRVRAWRQRQKEAARAERLAAATPTDPAAAVTTLAQAVPLLRQEAQAALERLSEVAASITAATALLADPAALEAHLRRVQADADKVRADAGAEIARLREQLDAALDERADADAAAAAALAQADAAATALAAARREHQSELDRLRADHAAALEAWTARVEESEAAHRRRTADLEALVEQQRDELARLRATAEQATATVGRLESDLAAARAETAAERERTEAVRADLAAARVETAAARAQVDAARDRADELRTELRDLRAASTPPGPAAPR
>CP024892.1|AUM20284.1|209898_210084_-|hypothetical-protein
MNDDEPADSDGDRITEVEELFADLDGVLPAEMTPLFYEHSYWELMLAVRDLLDILHRGAGK
>CP024892.1|AUM20285.1|210103_210781_-|hypothetical-protein
MTAPNPRTDGIRRHRAAVSADKHRAVRTAVDRCVARGRVIPAATLARDAGVTETFLYRHEAQPCPLCENTFGGGPINYFRSRMQSIAEARDSGVTREGLVTTASLRADLANQRAANQRLRQQIRALEHRLGEVLGTQSRTDMTELARLAHGSESGDAQRILELSEQNRSLAGQLADRNEELDAVRRLNTELTRRINSTEQSAHLGRRPAHIPSTRETGCGDDLSS
>CP024892.1|AUM20286.1|210777_212613_-|hypothetical-protein
MTEPVVVRLDSADTDLTKAVAAQYECDVWDLRSFGYPGKWARFRGRADRAQRGATGIGQGWLLDMVKQWVLRAALRRVSPAYLDEVILAVALLSSTLQDREDHGVHPTALGRADITTHLIRLGHLREEGRLTLKGQQRMVRYLARVLEDAEAWGLSAPGAVAAGLPASFAVLRADLPAGRARSVDEPSRALPRAVIRQLLDPAALNRLEDLAGAWAVNWFTLALGTGRRPGELCALPLDGCLERSVHRDDSGDEHTHPVLVHDMTKIAVTGYRLPISAASAAVIEDQQNRVRQTYPMTDPARLPLFPTPHRNPDGLRSVPTWHVHTVLRRWVMDLPELWCPDLDEEGRIAGAGHAVGDGRQPFPRDKIYPYALRHTWAQDHADSGTSLEVLQDLLGHTKPTTTQVYYRLTPTRRRDAVLRLSRLQLTHRGSLTSAGLRALEPAEELRTQIGSTAVPFGICIEPANVQAGGHACPYRMRCLGCTHFRTDPSYLPELREHLSQLLTSRERIRAADAAEIEPWVRSSAMPTDEEIDRVRHLIRRCEGELDGLTPTERDEIVRCITQVRTARAQVARVVPLELAGIVRHNDPDVFPSAFERLRSPGTTASTGVAR
>CP024892.1|AUM20287.1|212609_213755_-|recombinase-XerD
MSYRRLRITTPDLGAYYGVVDDDYRPHELASRWLEVRFYGRAQAETTSAAYASSVALFPTWAEQTGRDLPAAAKDLHLFAGYLATTPLTAGRSATRPRCASRVNRILVAVREFYRFAVAEQQLPAAVLGDLFDLPDEPNFRGRAGPRVRHRRREMRRGGPPEGATAAEVVALVESAHTFRDRFMLVLMAVTGLRVGQVLGLRRQDIHFVPDAGALGLPVPGDTGPRCRTCGEHLHVVRRTNPNGAWSKARFDFVVPVPPIVVALYDRYLDERDRCPAAADNDMLIVALRGPTQGNAISPRNLHKIVERLATNAGLRPIHPHMLRHFAASEHLAAGTSRDELQALFGWSQPSSADPYIHVGADRTRAAVDRLATRLSEETTS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP024892_1	1.1\|198126\|32\|CP024892\|CRT	198126-198157	32	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	198126-198157	0	1.0
CP024892_1	1.2\|198194\|33\|CP024892\|CRT	198194-198226	33	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	198194-198226	0	1.0
CP024892_1	1.3\|198263\|34\|CP024892\|CRT	198263-198296	34	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	198263-198296	0	1.0
CP024892_1	1.4\|198333\|36\|CP024892\|CRT	198333-198368	36	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	198333-198368	0	1.0
CP024892_1	1.5\|198195\|32\|CP024892\|PILER-CR	198195-198226	32	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	198195-198226	0	1.0
CP024892_1	1.6\|198264\|33\|CP024892\|PILER-CR	198264-198296	33	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	198264-198296	0	1.0
CP024892_1	1.7\|198334\|35\|CP024892\|PILER-CR	198334-198368	35	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	198334-198368	0	1.0
CP024892_2	2.1\|202874\|31\|CP024892\|CRISPRCasFinder	202874-202904	31	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	202874-202904	0	1.0
CP024892_2	2.2\|202941\|32\|CP024892\|CRISPRCasFinder,PILER-CR,CRT	202941-202972	32	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	202941-202972	0	1.0
CP024892_2	2.3\|203009\|32\|CP024892\|CRISPRCasFinder,PILER-CR,CRT	203009-203040	32	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	203009-203040	0	1.0
CP024892_2	2.4\|203077\|31\|CP024892\|CRISPRCasFinder,PILER-CR,CRT	203077-203107	31	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	203077-203107	0	1.0
CP024892_2	2.5\|203144\|37\|CP024892\|CRISPRCasFinder,PILER-CR,CRT	203144-203180	37	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	203144-203180	0	1.0
CP024892_1	1.1\|198126\|32\|CP024892\|CRT	198126-198157	32	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	1419490-1419521	7	0.781
CP024892_1	1.1\|198126\|32\|CP024892\|CRT	198126-198157	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	1784456-1784487	7	0.781
CP024892_1	1.1\|198126\|32\|CP024892\|CRT	198126-198157	32	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	412614-412645	7	0.781
CP024892_1	1.1\|198126\|32\|CP024892\|CRT	198126-198157	32	NZ_CP017943	Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence	186713-186744	8	0.75
CP024892_1	1.1\|198126\|32\|CP024892\|CRT	198126-198157	32	MK686072	Streptomyces phage RosaAsantewaa, complete genome	21170-21201	9	0.719
CP024892_2	2.3\|203009\|32\|CP024892\|CRISPRCasFinder,PILER-CR,CRT	203009-203040	32	NZ_CP021813	Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence	151639-151670	10	0.688

1. spacer 1.1|198126|32|CP024892|CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtgacgcgatctataccccgcaggatgtcgt	CRISPR spacer
ggtgacgcgatctataccccgcaggatgtcgt	Protospacer
********************************

2. spacer 1.2|198194|33|CP024892|CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 0, identity: 1.0

gtatccggtgtgcaaggacagacccgcgaacga	CRISPR spacer
gtatccggtgtgcaaggacagacccgcgaacga	Protospacer
*********************************

3. spacer 1.3|198263|34|CP024892|CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcggtcgaatgtgagaacctcacgttcggcaag	CRISPR spacer
ctcggtcgaatgtgagaacctcacgttcggcaag	Protospacer
**********************************

4. spacer 1.4|198333|36|CP024892|CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 0, identity: 1.0

ctggagtcatccgccgataaaggcgcaggctacatc	CRISPR spacer
ctggagtcatccgccgataaaggcgcaggctacatc	Protospacer
************************************

5. spacer 1.5|198195|32|CP024892|PILER-CR matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 0, identity: 1.0

tatccggtgtgcaaggacagacccgcgaacga	CRISPR spacer
tatccggtgtgcaaggacagacccgcgaacga	Protospacer
********************************

6. spacer 1.6|198264|33|CP024892|PILER-CR matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 0, identity: 1.0

tcggtcgaatgtgagaacctcacgttcggcaag	CRISPR spacer
tcggtcgaatgtgagaacctcacgttcggcaag	Protospacer
*********************************

7. spacer 1.7|198334|35|CP024892|PILER-CR matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 0, identity: 1.0

tggagtcatccgccgataaaggcgcaggctacatc	CRISPR spacer
tggagtcatccgccgataaaggcgcaggctacatc	Protospacer
***********************************

8. spacer 2.1|202874|31|CP024892|CRISPRCasFinder matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 0, identity: 1.0

actggacaaacgttcagtccaccacacccaa	CRISPR spacer
actggacaaacgttcagtccaccacacccaa	Protospacer
*******************************

9. spacer 2.2|202941|32|CP024892|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 0, identity: 1.0

tttgggcctcgctggaatcaagctggagtggc	CRISPR spacer
tttgggcctcgctggaatcaagctggagtggc	Protospacer
********************************

10. spacer 2.3|203009|32|CP024892|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 0, identity: 1.0

catatggatccggcgggcatccgagaggctat	CRISPR spacer
catatggatccggcgggcatccgagaggctat	Protospacer
********************************

11. spacer 2.4|203077|31|CP024892|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtgtggggtgaggtcgcagacctgtaccc	CRISPR spacer
ctgtgtggggtgaggtcgcagacctgtaccc	Protospacer
*******************************

12. spacer 2.5|203144|37|CP024892|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 0, identity: 1.0

atgggtcacgagcaatcaggactcatcagcgtggcag	CRISPR spacer
atgggtcacgagcaatcaggactcatcagcgtggcag	Protospacer
*************************************

13. spacer 1.1|198126|32|CP024892|CRT matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 7, identity: 0.781

ggtgacgcgatctataccccgcaggatgtcgt	CRISPR spacer
ggtgaggcgatctatacgccgcagtgtgcgtt	Protospacer
***** *********** ****** .**.  *

14. spacer 1.1|198126|32|CP024892|CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 7, identity: 0.781

ggtgacgcgatctataccccgcaggatgtcgt	CRISPR spacer
ggtgaggcgatctatacgccgcagtgtgcgtt	Protospacer
***** *********** ****** .**.  *

15. spacer 1.1|198126|32|CP024892|CRT matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

ggtgacgcgatctataccccgcaggatgtcgt	CRISPR spacer
ggcgaaatgatctataccccgaaggatttcga	Protospacer
**.** ..************* ***** ***

16. spacer 1.1|198126|32|CP024892|CRT matches to NZ_CP017943 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgacgcgatctataccccgcaggatgtcgt	CRISPR spacer
gctgacgcgatctatacccgccaggagacgat	Protospacer
* *****************  ***** .. .*

17. spacer 1.1|198126|32|CP024892|CRT matches to MK686072 (Streptomyces phage RosaAsantewaa, complete genome) position: , mismatch: 9, identity: 0.719

ggtgacgcgatctataccccgcaggatgtcgt	CRISPR spacer
ggtgacgcgatctatgcccggcagatcgcata	Protospacer
***************.*** ****. .*.

18. spacer 2.3|203009|32|CP024892|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 10, identity: 0.688

catatggatccggcgggcatccgagaggctat	CRISPR spacer
tggcgggatgcggcgggcatccgaaaggcgtg	Protospacer
..   **** **************.****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6089 : 78500

Mycobacterium_phage(37.5%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM20145.1\|6089_9083_-\|transposase	DDE transposase	NA	NA	NA	NA
AUM20146.1\|9759_11199_-	aldehyde dehydrogenase	NA	NA	NA	NA
AUM20147.1\|11452_12085_-	hypothetical protein	NA	NA	NA	NA
AUM20148.1\|12163_13273_-\|transposase	IS630 family transposase	NA	NA	NA	NA
AUM20149.1\|13521_13908_-	hypothetical protein	NA	NA	NA	NA
AUM20150.1\|13874_14915_-	hypothetical protein	NA	NA	NA	NA
AUM20309.1\|14945_16034_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
AUM20151.1\|16157_17795_-	methane monooxygenase	NA	NA	NA	NA
AUM20152.1\|17944_19447_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
AUM20153.1\|19599_20064_-	hypothetical protein	NA	NA	NA	NA
AUM20154.1\|20774_21452_+	GntR family transcriptional regulator	NA	NA	NA	NA
AUM20155.1\|21792_23202_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
AUM20156.1\|23526_24816_+	alcohol dehydrogenase	NA	NA	NA	NA
AUM20157.1\|25019_27947_+	FAD-binding oxidoreductase	NA	NA	NA	NA
AUM20158.1\|28242_28725_-	hypothetical protein	A0A222ZN33	Mycobacterium_phage	5.6e-15	48.7
AUM20159.1\|31814_32432_+	methyltransferase	NA	NA	NA	NA
AUM20310.1\|32485_33241_-	3-ketoacyl-ACP reductase	Q06VL0	Trichoplusia_ni_ascovirus	1.5e-14	29.6
AUM20160.1\|33344_36338_-\|transposase	DDE transposase	NA	NA	NA	NA
AUM20161.1\|36678_38037_-	cytochrome P450	V5UQK0	Mycobacterium_phage	1.0e-93	42.1
AUM20162.1\|39062_39779_+	ParA family protein	NA	NA	NA	NA
AUM20163.1\|39771_40290_+	hypothetical protein	NA	NA	NA	NA
AUM20164.1\|40499_41495_+	DUF2637 domain-containing protein	NA	NA	NA	NA
AUM20165.1\|41870_43346_-	putative lipid II flippase FtsW	NA	NA	NA	NA
AUM20166.1\|43478_43664_+	hypothetical protein	NA	NA	NA	NA
AUM20167.1\|43664_43901_-	hypothetical protein	NA	NA	NA	NA
AUM20168.1\|44013_44679_+	hypothetical protein	NA	NA	NA	NA
AUM20169.1\|44765_45929_-	indolylacetylinositol arabinosyltransferase	NA	NA	NA	NA
AUM20170.1\|46166_46640_-	hypothetical protein	NA	NA	NA	NA
AUM20171.1\|47009_47192_+	hypothetical protein	NA	NA	NA	NA
AUM20172.1\|47454_48198_-	methyltransferase domain-containing protein	NA	NA	NA	NA
AUM20173.1\|49296_50106_-	ATP-binding protein	R9U430	Rhizobium_phage	8.8e-05	21.8
AUM20174.1\|50105_51491_-\|transposase	transposase	A0A2H4JGQ6	uncultured_Caudovirales_phage	6.8e-05	22.8
AUM20311.1\|51492_52095_-	recombinase family protein	A0A219YB42	Aeromonas_phage	2.1e-35	47.3
AUM20175.1\|52292_52652_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AUM20176.1\|52648_53245_+	cadmium transporter	NA	NA	NA	NA
AUM20177.1\|53442_54030_+	DNA resolvase	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	40.6
AUM20312.1\|55005_56808_-	hypothetical protein	NA	NA	NA	NA
AUM20178.1\|57485_57944_-	transcriptional regulator	NA	NA	NA	NA
AUM20179.1\|58849_60466_+	hypothetical protein	NA	NA	NA	NA
AUM20313.1\|60550_61630_+	insoluble domain protein	NA	NA	NA	NA
AUM20180.1\|61733_62849_+	hypothetical protein	NA	NA	NA	NA
AUM20181.1\|62845_63619_+	hypothetical protein	NA	NA	NA	NA
AUM20182.1\|63615_64188_+	hypothetical protein	NA	NA	NA	NA
AUM20183.1\|64205_64499_+	hypothetical protein	NA	NA	NA	NA
AUM20184.1\|64515_64902_+	hypothetical protein	NA	NA	NA	NA
AUM20185.1\|64898_65504_+	hypothetical protein	NA	NA	NA	NA
AUM20186.1\|65500_66343_+	hypothetical protein	NA	NA	NA	NA
AUM20314.1\|66336_67905_+	hypothetical protein	NA	NA	NA	NA
AUM20187.1\|67901_69407_+	hypothetical protein	NA	NA	NA	NA
AUM20188.1\|69426_71187_+	ATP-binding protein	NA	NA	NA	NA
AUM20189.1\|71183_71498_+	hypothetical protein	NA	NA	NA	NA
AUM20190.1\|71494_73132_+	peptidase M23	A0A1D8EVX2	Mycobacterium_phage	9.4e-30	37.2
AUM20315.1\|73146_73695_+	hypothetical protein	NA	NA	NA	NA
AUM20191.1\|73710_75702_+	conjugal transfer protein TraD	NA	NA	NA	NA
AUM20192.1\|75706_76207_+	DUF4913 domain-containing protein	NA	NA	NA	NA
AUM20193.1\|76304_76889_-	hypothetical protein	NA	NA	NA	NA
AUM20194.1\|77042_78500_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

100485 : 152688

Corynebacterium_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM20205.1\|100485_102027_+\|transposase	transposase	NA	NA	NA	NA
AUM20206.1\|102073_102838_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.2e-25	29.8
AUM20207.1\|105024_105642_+	hypothetical protein	A0A248SJV3	Salicola_phage	1.0e-13	34.2
AUM20208.1\|105670_106156_+	hypothetical protein	NA	NA	NA	NA
AUM20209.1\|106319_106580_-	hypothetical protein	NA	NA	NA	NA
AUM20210.1\|106670_107339_+	hypothetical protein	S5VKI3	Leptospira_phage	5.7e-18	29.5
AUM20211.1\|107284_108223_+	hypothetical protein	NA	NA	NA	NA
AUM20212.1\|108384_108678_+	hypothetical protein	NA	NA	NA	NA
AUM20213.1\|108605_109679_+	hypothetical protein	NA	NA	NA	NA
AUM20214.1\|109692_110670_+	hypothetical protein	NA	NA	NA	NA
AUM20215.1\|112593_113868_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	2.1e-37	28.3
AUM20216.1\|114240_115812_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
AUM20217.1\|117273_118521_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	4.8e-111	51.9
AUM20218.1\|119089_120334_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.0e-81	44.7
AUM20219.1\|120349_120619_-	hypothetical protein	NA	NA	NA	NA
AUM20220.1\|120790_121300_-	hypothetical protein	NA	NA	NA	NA
AUM20317.1\|121901_122648_-	amidase	NA	NA	NA	NA
AUM20221.1\|122839_124390_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
AUM20318.1\|124566_125640_+	UDP-N-acetylenolpyruvoylglucosamine reductase	NA	NA	NA	NA
AUM20222.1\|125885_126161_-	hypothetical protein	NA	NA	NA	NA
AUM20223.1\|126309_126606_-	molecular chaperone GroES	NA	NA	NA	NA
AUM20224.1\|126686_128072_+	hypothetical protein	NA	NA	NA	NA
AUM20225.1\|128101_129814_+	hypothetical protein	NA	NA	NA	NA
AUM20226.1\|129832_130573_-	hypothetical protein	NA	NA	NA	NA
AUM20227.1\|130929_132417_-	hypothetical protein	NA	NA	NA	NA
AUM20228.1\|132308_133751_-	hypothetical protein	NA	NA	NA	NA
AUM20229.1\|133747_134647_-	hypothetical protein	NA	NA	NA	NA
AUM20230.1\|135315_135852_-	hypothetical protein	NA	NA	NA	NA
AUM20231.1\|136274_136736_-	hypothetical protein	NA	NA	NA	NA
AUM20232.1\|136937_138218_-	hypothetical protein	NA	NA	NA	NA
AUM20233.1\|138347_138734_-	hypothetical protein	NA	NA	NA	NA
AUM20234.1\|138850_139060_-	hypothetical protein	NA	NA	NA	NA
AUM20235.1\|139229_140021_-	hypothetical protein	NA	NA	NA	NA
AUM20236.1\|140350_140674_-	hypothetical protein	NA	NA	NA	NA
AUM20237.1\|140812_143029_-	ATP-binding protein	NA	NA	NA	NA
AUM20238.1\|145496_146051_-	adenylate cyclase	NA	NA	NA	NA
AUM20239.1\|146668_147802_+\|transposase	IS630 family transposase	NA	NA	NA	NA
AUM20240.1\|148383_149265_+	hypothetical protein	NA	NA	NA	NA
AUM20241.1\|149576_149768_+	hypothetical protein	NA	NA	NA	NA
AUM20242.1\|151116_152688_+\|transposase	IS1634 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

162912 : 225979

Gordonia_phage(16.67%)

transposase,integrase

attL 149823:149845|attR 207130:207152

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
149823:149845	attL	NA	NA	NA	NA
AUM20250.1\|162912_164424_-\|transposase	IS21 family transposase	NA	NA	NA	NA
AUM20251.1\|165096_165849_+	hypothetical protein	A0A2P1A0W3	Gordonia_phage	2.6e-59	43.6
AUM20252.1\|165845_167009_-	hypothetical protein	NA	NA	NA	NA
AUM20253.1\|167029_168202_-	HNH endonuclease	NA	NA	NA	NA
AUM20254.1\|168198_169398_-	DNA methyltransferase	A0A1B0XVT8	Campylobacter_phage	8.4e-20	33.0
AUM20255.1\|169780_170794_-	hypothetical protein	NA	NA	NA	NA
AUM20321.1\|170800_171931_-\|integrase	integrase	NA	NA	NA	NA
AUM20256.1\|171818_172196_-	hypothetical protein	NA	NA	NA	NA
AUM20257.1\|172789_173020_+	hypothetical protein	NA	NA	NA	NA
AUM20258.1\|173224_174841_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
AUM20259.1\|175159_176482_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	6.9e-07	25.8
AUM20260.1\|179510_180119_+	hypothetical protein	NA	NA	NA	NA
AUM20261.1\|180072_180465_-	hypothetical protein	NA	NA	NA	NA
AUM20262.1\|180668_181514_+	hypothetical protein	NA	NA	NA	NA
AUM20263.1\|181553_182282_+	hypothetical protein	NA	NA	NA	NA
AUM20264.1\|182375_184130_+	hypothetical protein	NA	NA	NA	NA
AUM20265.1\|184126_184798_+	hypothetical protein	NA	NA	NA	NA
AUM20266.1\|184801_186535_+	hypothetical protein	NA	NA	NA	NA
AUM20267.1\|186531_188073_+	hypothetical protein	NA	NA	NA	NA
AUM20268.1\|188069_188798_+	hypothetical protein	NA	NA	NA	NA
AUM20269.1\|188794_190924_+	hypothetical protein	NA	NA	NA	NA
AUM20270.1\|190972_191425_-	hypothetical protein	NA	NA	NA	NA
AUM20271.1\|191450_192233_-	hypothetical protein	NA	NA	NA	NA
AUM20272.1\|192242_194333_-	hypothetical protein	NA	NA	NA	NA
AUM20273.1\|194396_195533_-	hypothetical protein	NA	NA	NA	NA
AUM20274.1\|195731_197786_-	hypothetical protein	NA	NA	NA	NA
AUM20275.1\|199079_200648_+	CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
AUM20276.1\|200665_200959_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
AUM20322.1\|201140_201937_-\|transposase	IS5/IS1182 family transposase	A0A0M5M147	Mycobacterium_phage	2.3e-21	32.4
AUM20277.1\|202207_202474_+	hypothetical protein	NA	NA	NA	NA
AUM20278.1\|202470_202767_+	hypothetical protein	NA	NA	NA	NA
AUM20279.1\|204819_205068_+	hypothetical protein	NA	NA	NA	NA
AUM20280.1\|205155_205884_-	hypothetical protein	NA	NA	NA	NA
AUM20281.1\|206406_206652_+	hypothetical protein	NA	NA	NA	NA
AUM20282.1\|206818_207064_-	hypothetical protein	NA	NA	NA	NA
AUM20323.1\|207208_207400_-	hypothetical protein	NA	NA	NA	NA
207130:207152	attR	NA	NA	NA	NA
AUM20283.1\|207799_208660_-	hypothetical protein	NA	NA	NA	NA
AUM20284.1\|209898_210084_-	hypothetical protein	NA	NA	NA	NA
AUM20285.1\|210103_210781_-	hypothetical protein	NA	NA	NA	NA
AUM20286.1\|210777_212613_-	hypothetical protein	NA	NA	NA	NA
AUM20287.1\|212609_213755_-	recombinase XerD	NA	NA	NA	NA
AUM20288.1\|214179_214479_-	hypothetical protein	NA	NA	NA	NA
AUM20324.1\|214838_215147_-	hypothetical protein	NA	NA	NA	NA
AUM20289.1\|215301_215823_-	hypothetical protein	NA	NA	NA	NA
AUM20290.1\|216265_217006_+\|transposase	transposase	NA	NA	NA	NA
AUM20291.1\|217002_219141_+\|transposase	transposase	NA	NA	NA	NA
AUM20292.1\|219137_220241_+	AAA family ATPase	NA	NA	NA	NA
AUM20293.1\|220237_222583_+	hypothetical protein	NA	NA	NA	NA
AUM20294.1\|222839_223436_-	cadmium transporter	NA	NA	NA	NA
AUM20295.1\|223432_223792_-	ArsR family transcriptional regulator	NA	NA	NA	NA
AUM20296.1\|223989_224592_+	recombinase family protein	A0A219YB42	Aeromonas_phage	2.1e-35	47.3
AUM20297.1\|224593_225979_+\|transposase	transposase	A0A2H4JGQ6	uncultured_Caudovirales_phage	6.8e-05	22.8

Anti-CRISPR protein detection

Acr_ID: CP024892.1|AUM20281.1|206406_206652_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP024892.1|AUM20281.1|206406_206652_+|hypothetical-protein

206406_206652_+

81 aa aa

162912-225979

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP024890_1	Orphan	1.1\|1592800\|17\|CP024890\|CRISPRCasFinder	1592800-1592816	17	186031-186047	2

1. spacer 1.1|1592800|17|CP024890|CRISPRCasFinder matches to CP024892 position: 186031-186047, mismatch: 2

cgaccacgcgatccggc	CRISPR spacer
cgaactcgcgatccggc	Protospacer
*** * ***********

2. CP024891

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4654 : 69426

uncultured_Caudovirales_phage(16.67%)

transposase,integrase

attL 2767:2826|attR 59354:63484

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2767:2826	attL	NA	NA	NA	NA
AUM20070.1\|4654_6040_+\|transposase	transposase	A0A2H4JGQ6	uncultured_Caudovirales_phage	6.8e-05	22.8
AUM20071.1\|6039_6849_+	ATP-binding protein	R9U430	Rhizobium_phage	8.8e-05	21.8
AUM20072.1\|7656_8979_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	6.9e-07	25.8
AUM20129.1\|9266_10820_-	hypothetical protein	A0A1I9SA50	Rhodococcus_phage	8.9e-22	35.0
AUM20073.1\|10710_13164_-\|integrase	site-specific integrase	NA	NA	NA	NA
AUM20130.1\|13160_14006_-\|integrase	integrase	NA	NA	NA	NA
AUM20074.1\|14455_14761_-	hypothetical protein	NA	NA	NA	NA
AUM20075.1\|14777_15179_+	hypothetical protein	NA	NA	NA	NA
AUM20131.1\|15620_16721_+	hypothetical protein	NA	NA	NA	NA
AUM20076.1\|17414_17867_+	hypothetical protein	NA	NA	NA	NA
AUM20077.1\|17878_19519_+	hypothetical protein	NA	NA	NA	NA
AUM20078.1\|19728_19917_+	hypothetical protein	NA	NA	NA	NA
AUM20079.1\|20055_21354_-	hypothetical protein	NA	NA	NA	NA
AUM20080.1\|21437_21644_-	hypothetical protein	NA	NA	NA	NA
AUM20132.1\|21762_22560_-	chromosome partitioning protein	A0A240F4U1	Ochrobactrum_phage	7.8e-14	35.3
AUM20133.1\|22623_22905_-	replication protein RepB	NA	NA	NA	NA
AUM20134.1\|22904_23783_-	replication protein RepA	NA	NA	NA	NA
AUM20081.1\|24049_24439_-	hypothetical protein	NA	NA	NA	NA
AUM20082.1\|25087_25630_+	dihydrofolate reductase	NA	NA	NA	NA
AUM20135.1\|26712_28176_-	adenylate/guanylate cyclase domain-containing protein	A0A1B1IWY2	uncultured_Mediterranean_phage	2.3e-11	30.6
AUM20083.1\|28319_28859_-	PaaI family thioesterase	NA	NA	NA	NA
AUM20084.1\|28884_30462_-	MFS transporter	NA	NA	NA	NA
AUM20136.1\|30584_31250_+	TetR family transcriptional regulator	NA	NA	NA	NA
AUM20085.1\|31608_32424_-	AAA family ATPase	NA	NA	NA	NA
AUM20086.1\|32420_34076_-\|transposase	IS21 family transposase	NA	NA	NA	NA
AUM20087.1\|34672_34906_-	hypothetical protein	NA	NA	NA	NA
AUM20088.1\|34902_35490_-	invertase	A0A0A7NPV4	Enterobacteria_phage	2.2e-34	45.5
AUM20089.1\|35733_36330_-	cadmium transporter	NA	NA	NA	NA
AUM20090.1\|36326_36686_-	ArsR family transcriptional regulator	NA	NA	NA	NA
AUM20091.1\|36883_37486_+	recombinase family protein	A0A219YB42	Aeromonas_phage	2.1e-35	47.3
AUM20092.1\|37487_38873_+\|transposase	transposase	A0A2H4JGQ6	uncultured_Caudovirales_phage	6.8e-05	22.8
AUM20093.1\|38872_39682_+	ATP-binding protein	R9U430	Rhizobium_phage	8.8e-05	21.8
AUM20094.1\|46113_46515_+	hypothetical protein	NA	NA	NA	NA
AUM20095.1\|48054_49155_-	hypothetical protein	NA	NA	NA	NA
AUM20096.1\|49168_49411_-	hypothetical protein	NA	NA	NA	NA
AUM20097.1\|49615_49822_-	hypothetical protein	NA	NA	NA	NA
AUM20137.1\|50948_51185_-	hypothetical protein	NA	NA	NA	NA
AUM20098.1\|51343_51577_+	hypothetical protein	NA	NA	NA	NA
AUM20099.1\|52632_54174_+\|transposase	transposase	NA	NA	NA	NA
AUM20100.1\|54220_54985_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.2e-25	29.8
AUM20101.1\|57171_57789_+	hypothetical protein	A0A248SJV3	Salicola_phage	1.0e-13	34.2
AUM20102.1\|57817_58303_+	hypothetical protein	NA	NA	NA	NA
AUM20103.1\|58466_58727_-	hypothetical protein	NA	NA	NA	NA
AUM20104.1\|59487_60084_-	cadmium transporter	NA	NA	NA	NA
AUM20105.1\|60080_60440_-	ArsR family transcriptional regulator	NA	NA	NA	NA
AUM20106.1\|60637_61240_+	recombinase family protein	A0A219YB42	Aeromonas_phage	2.1e-35	47.3
AUM20107.1\|61241_62627_+\|transposase	transposase	A0A2H4JGQ6	uncultured_Caudovirales_phage	6.8e-05	22.8
AUM20108.1\|62626_63436_+	ATP-binding protein	R9U430	Rhizobium_phage	8.8e-05	21.8
AUM20109.1\|63619_64186_-	hypothetical protein	NA	NA	NA	NA
59354:63484	attR	NA	NA	NA	NA
AUM20110.1\|64182_65964_-	serine/threonine protein kinase	Q2NP48	Hyphantria_cunea_nuclear_polyhedrosis_virus	1.1e-44	30.6
AUM20111.1\|65960_66416_-	MarR family transcriptional regulator	NA	NA	NA	NA
AUM20112.1\|66472_67906_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	7.2e-26	33.9
AUM20113.1\|67999_68617_+	methyltransferase	NA	NA	NA	NA
AUM20138.1\|68670_69426_-	3-ketoacyl-ACP reductase	Q06VL0	Trichoplusia_ni_ascovirus	1.5e-14	29.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP024890

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP024890_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024890_1

1592772-1592889

Orphan

Consensus_repeat	Method
ACCACGCGATCCGGCACCGCGAAATCCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP024890_1

>merge|CP024890|1|1592772-1592889|CRISPRCasFinder
ACGACGCGGTCGGACACCGCGAAGTCGACGACCACGCGATCCGGCACCGCGAAATCCACCACCGCACGATCCGGCACCGGGAAATCCACCACCACACGATCCGGCACCGCGAAATCCA

>CP024890|1|1|1592772-1592889|CRISPRCasFinder
ACGACGCGGTCGGACACCGCGAAGTCGA	CGACCACGCGATCCGGC
ACCGCGAAATCCACCACCGCACGATCCG	GCACCGGGAAATCCACC
ACCACACGATCCGGCACCGCGAAATCCA

Protein	Signature genes	Signature genes Name	Protein_function
CP024890.1\|AUM16368.1\|1601439_1601853_+\|glyoxalase	unknown	unknown	gnl\|CDD\|319914
CP024890.1\|AUM16350.1\|1582053_1582473_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
CP024890.1\|AUM16366.1\|1598263_1599082_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213260
CP024890.1\|AUM16352.1\|1582870_1583263_+\|YccF-domain-containing-protein	unknown	unknown	gnl\|CDD\|236975
CP024890.1\|AUM16369.1\|1601834_1602446_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
CP024890.1\|AUM16362.1\|1594348_1594912_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
CP024890.1\|AUM16367.1\|1600517_1601429_+\|RNA-polymerase-sigma-factor-SigJ	unknown	unknown	gnl\|CDD\|236600
CP024890.1\|AUM16364.1\|1596015_1597365_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
CP024890.1\|AUM16360.1\|1593143_1593572_+\|hypothetical-protein	unknown	unknown	unknown
CP024890.1\|AUM16351.1\|1582631_1582874_+\|hypothetical-protein	unknown	unknown	unknown
CP024890.1\|AUM16354.1\|1584357_1584546_-\|hypothetical-protein	unknown	unknown	unknown
CP024890.1\|AUM16356.1\|1586965_1588624_+\|helicase	unknown	unknown	gnl\|CDD\|223989
CP024890.1\|AUM16365.1\|1597398_1598271_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
CP024890.1\|AUM16361.1\|1593698_1594346_+\|DUF3239-domain-containing-protein	unknown	unknown	gnl\|CDD\|378679
CP024890.1\|AUM16359.1\|1591023_1592430_-\|citrate:proton-symporter	unknown	unknown	gnl\|CDD\|225407
CP024890.1\|AUM16363.1\|1594925_1595912_-\|TIGR03560-family-F420-dependent-LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274648
CP024890.1\|AUM16358.1\|1589281_1590955_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|225827
CP024890.1\|AUM16353.1\|1583708_1584293_+\|DUF3235-domain-containing-protein	unknown	unknown	gnl\|CDD\|369056
CP024890.1\|AUM16355.1\|1584606_1586889_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|379300
CP024890.1\|AUM16357.1\|1588631_1589300_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|226931

Protein	Function_ID	Function_description	E-value
CP024890.1\|AUM16368.1\|1601439_1601853_+\|glyoxalase	gnl\|CDD\|319914	cd07251, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.71437e-36
CP024890.1\|AUM16350.1\|1582053_1582473_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.13898e-22
CP024890.1\|AUM16366.1\|1598263_1599082_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.1227e-132
CP024890.1\|AUM16352.1\|1582870_1583263_+\|YccF-domain-containing-protein	gnl\|CDD\|236975	PRK11770, PRK11770, YccF domain-containing protein.	4.12171e-54
CP024890.1\|AUM16369.1\|1601834_1602446_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	2.61939e-20
CP024890.1\|AUM16364.1\|1596015_1597365_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
CP024890.1\|AUM16367.1\|1600517_1601429_+\|RNA-polymerase-sigma-factor-SigJ	gnl\|CDD\|236600	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional.	7.1002e-137
CP024890.1\|AUM16357.1\|1588631_1589300_-\|DNA-binding-response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	3.29851e-68
CP024890.1\|AUM16356.1\|1586965_1588624_+\|helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	1.17154e-117
CP024890.1\|AUM16365.1\|1597398_1598271_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	2.30096e-69
CP024890.1\|AUM16361.1\|1593698_1594346_+\|DUF3239-domain-containing-protein	gnl\|CDD\|378679	pfam11580, DUF3239, Protein of unknown function (DUF3239). This bacterial family of proteins may be membrane proteins however this cannot be confirmed. Currently there is no known function.	1.71296e-52
CP024890.1\|AUM16359.1\|1591023_1592430_-\|citrate:proton-symporter	gnl\|CDD\|225407	COG2851, CitM, H+/citrate symporter [Energy production and conversion].	1.78994e-167
CP024890.1\|AUM16363.1\|1594925_1595912_-\|TIGR03560-family-F420-dependent-LLM-class-oxidoreductase	gnl\|CDD\|274648	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis. [Unknown function, Enzymes of unknown specificity].	3.77418e-95
CP024890.1\|AUM16358.1\|1589281_1590955_-\|histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	4.91335e-125
CP024890.1\|AUM16353.1\|1583708_1584293_+\|DUF3235-domain-containing-protein	gnl\|CDD\|369056	pfam06737, Transglycosylas, Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues.	1.71106e-35
CP024890.1\|AUM16355.1\|1584606_1586889_+\|DNA-binding-protein	gnl\|CDD\|379300	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. This domain family is found in a wide variety of helicases and helicase-related proteins.	1.61788e-41
CP024890.1\|AUM16362.1\|1594348_1594912_+\|N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.81208e-25

>CP024890.1|AUM16359.1|1591023_1592430_-|citrate:proton-symporter
MLVFLGFLMVAVFMYLILSKRATPVVGLILVPVAFGLFAGAGLDLGDMIVDGVTDLAPTAALLFFAIIFFGIMIDVGLFDPLVRLILRLVRDDPARLVVGTAVLAMIVSLDGDGSTTFIITTSAMLPLYLKLRVSPVILTVVAGLANATMNIIPWGGPTVRAASALGLSPSDVFVPMIPSLLVGLVVVLGFALHLGVMERRRLGKLVWTAEPVLAGVGRGGSTGSGGSGGSRATGTGPGADAGDSDDQTGGFAAALDPNRATLRPKLLPFNALLTVALLVVLGLDVLPIPVLFMIAAGLALAVNFPRVADQSEAIVRHSSSIVSVVAMVFAAAVLTGVFQGTGMVESMALWLTGVIPDALGPFLAVITGVLSIPFTFFMTNDAFYFGVLPVLAETAAQYGIEPVEMARASITGQPVHMQSPLVPAILLLVTLAGVQLADHHRKVLWRATIVSLTMLVVGVALGQIPLG
>CP024890.1|AUM16358.1|1589281_1590955_-|histidine-kinase
MRLRTQVLLLQSAVVAAALGLGFAAFVTTTEHRVTDEHGQRALAVARTVAVDATVRAEVARLAAADDGVVAPGNPELASGTVQQAAEAVRDATGALFVVVTDEQGLRLAHPDPDLLGLRVSTDPDEALAGREVVRSERGTLGDSVRAKVPVVAPGSDRVVGEVSVGIATDRIRSELREDVAQASLVAAGALACGAAGSALLARRWKRLTLGLEPEQLAELVREQEVVLHGIGEGVIGADTEGTVTVVNAEARRLLDLRGGAGDRLEGVGLTPRLLDVARSPRDEPVAAAVGDRIVLAVARRVRRDGRDLGTVMSVRDRTDVEKLTRELDAVQSLTTALRAQRHETANRLHLLYGLLQQGRSAQATEYLEQLLGAGPAGRPLDGLDAVADPYLHAFLTAKAAHARESGVTLVLGENTWVRGTVRCPVDVTTVLGNLLDNAIEAARERGHDPAEVEVELVEAGRDLHVAVADTGAGVAAGRAEEVFGEGVTTHADGAVPGGRGMGLALARQVARQHGGDVTLADPGGRRTPDNPTGGAVFVATLIDVLDEGDTGWADPI
>CP024890.1|AUM16357.1|1588631_1589300_-|DNA-binding-response-regulator
MGGSDLTVLVVDDDFRVAELHASVVAAVAGFRVAAVAGTLAAARAAVRETAIDLALVDVYLPDGSGIDLIRELDCDAFVLGAAAEGTTVRAALAAGASGYLVKPFPNTELARRLSAYAQYRRLVAGAELSQAEIDSALAALRPAPSGAADRAPRSVTKELVLQALSSSATPMSAGEVAVTIGVSRATAQRYLAALVTKGQLRMQLRYGSTGRPEQEYRLPAG
>CP024890.1|AUM16356.1|1586965_1588624_+|helicase
MPDGPLIVQSDKTLLLEVDHALANEARQAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAEQVVDALVSHSRFAVPQPLLVDIVDTMARYGRLQLVKNPAHGLTLVSLDRAVLEEVMRNKKIAPMLGARLDDDTVIVHPSERGRLKQMLLKVGWPAEDLAGYVDGEAHAISLDFESHPWHLRDYQEMAADSFWAGGSGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWKRELIARTSLTEDEIGEYSGEKKEIRPVTIATYQVITRKSKGEYRNLELFDSRDWGLMIYDEVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGWIAPAECVEVRVTLTDAERMAYAVAEPEERYKLCSTAHTKIAVVKSILARHRDSPTLIIGAYLDQLDELGEALGAPVIKGSTRNKEREELFDRFRAGELKVLVVSKVANFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHDGGQAHFYSVVARDTLDAEYAAHRQRFLAEQGYAYRITDADDLLGPAIG
>CP024890.1|AUM16355.1|1584606_1586889_+|DNA-binding-protein
MTATDPAAPETGPESLARWLADRRDADLGELLRARPDLVVPPPATMTVLAGRAQQRASVFRAADELSVLDFGVVEALTRLGADRVPVTRRALLDSLSGRVTAKNVDRSLEALRRLSLVWGPAEGLRVVEAAAATVPWRLGRGPDPDPDPQDLGAVLADLDPARRSLLDTLARTSPVGRTRDAAPDTPADRPVQRLIAAGLLIRLDDETVELPHRVGQALRDEAPFDPAALTPPRPLPATHVVADVNATAAGAALELLRHCENLIDALGALPAPALKSGGLGVRELRRLAKTVDVDEQLAALLVEVLAAAGLIARGMPQPAPTTDIDDYWAPTTAADGWSNAPPAQRWAVLAGAWLDAPRRMWLVGRRDATDKPIAALSDEARSTAAPRERRLLLELLAEVPGSAPDADAARAVLAWRRPRWAARLGGDTVAETLREATALAVVAHGALASPGKALLHGGDPDAEMAAVLPEPVDYVLVQADLTVVAPGPLVPELADRIALVADVESAGAATVYRVTEAGVRRALDAGTGAADLHALFATHSRTPVPQALTYLIDDVARRHGRLRAGVAASFVRSDDPALLAEVLGHPVAARLALRAVAPTVAISQAPLAEVLAELRGAGFAPAGEDATGAVLDLRPRGARVSVPRARPRYAGPMPPTGEQLDTLIRTLRAGDRAAAAPRGATVRGDGSRTGGAATMALLQLAAHDKRSVRIGYVDAQGVATHRIVDPVAVGGGQLEAFDPAAGTVRSFVLHRITTVALVD
>CP024890.1|AUM16354.1|1584357_1584546_-|hypothetical-protein
MADNSKKQYVDPGWPKVADGDHAVTELSSTRSGPLSPYGEEMEFPLPVDALPYTHPRTVINR
>CP024890.1|AUM16353.1|1583708_1584293_+|DUF3235-domain-containing-protein
MSGRHRKPTNTGRTVAKFALTSAVLGVTGVAFSGTANAAPDSDWDRLAQCESGGNWGINTGNGYQGGLQFSPSTWNAYGGGEYAATANQASREEQIVVAERVLAGQGWGAWPSCSSSLGLSSAPTQRSAPSTSAGTVQNTPVVEAAPEAPELPALPAEAQGLRAGFEQGLEALRQAGIAVDQNLVDAVNAALPN
>CP024890.1|AUM16352.1|1582870_1583263_+|YccF-domain-containing-protein
MRILLNIIWLVFGGLWLALGYFVAGLICFVLIITIPFGIAAFRIGVYALWPFGKTVVDKPTAGAGSLIGNVIWVIVAGIWLALGHVVTAIAMAITIIGIPLAVANLKMVPISLLPLGKDIVPVDNRPSYM
>CP024890.1|AUM16351.1|1582631_1582874_+|hypothetical-protein
MERVGTSSSSVPGNGLLKAALACFAVGVVAVVAIFLTPVVTDGRPGLVLYLLTLAWPLGFVLALTFALRSGRRARGRDRT
>CP024890.1|AUM16350.1|1582053_1582473_-|cold-shock-protein
MNAVPTGKVKWYDVEKGFGFLSQEEGEDVYVRASALPSGVEGLKPGQRVEFGMAAGRRGPQALSLKLLDPLPSVRQGGRREAAPQKRHTPDELHGMVEDMIKLLEATVQPELRKGRHPERKTAQRISEVMRAVARELDS
>CP024890.1|AUM16360.1|1593143_1593572_+|hypothetical-protein
MATSERPGPGLDDRAPRRKRRPFAAAVEWLKTHVRRLARAVRKRRDAVLRDAPASTDQLIDTVTEGSASTRAVLKGAGAALTGKNPVWAAVKGLISGLSTRTKILLALLVVLVALLAPVLLVVALLALLVAWLVAAVRAATR
>CP024890.1|AUM16361.1|1593698_1594346_+|DUF3239-domain-containing-protein
MDLPHAKAVNQTVAEVRRLRVSAIVLAVLFTVAAVWLIAVGRAWSFVVAAVVVVAALTSAWVAVWAPRKVGTIQDLYRDSPLVPAVVSEIRPRGMTLLALVDIAKPQTDGHRYALVARDVTAVPGHRVRVGERVPSVAVLSDRTTRNTSGVWQMVSPMPIAWGTRDASVLREAAAAIDETEWKVLEGKLSRSDEVAASEERRLVLDPKDLPADLR
>CP024890.1|AUM16362.1|1594348_1594912_+|N-acetyltransferase
MRPVVLTGSTVVLTVPRAGDVDAITAACRDRSIVRWTTVPDPYTRADAQRFVGDVVPAGWAAHSPVWAVRTSADGPLLGTVGLIERDASAAEIGYWIAPAARARGLATESVNLLCDYAFRSDGLKLDRIEWRALAGHRASAAVARRVGFRFEGVQRRGILQRGSRHDAWVAGLLPDDPRVPADGWPM
>CP024890.1|AUM16363.1|1594925_1595912_-|TIGR03560-family-F420-dependent-LLM-class-oxidoreductase
MRFGMFVPQGWRLDLVGIEPAEQWRVMRDLAQRADSGPWESIWVYDHFHTVPVPTEEATHEAWSLVSAFAAVTERVRIGQMCTAMGYRNPAYLAKVAATADIVSGGRIEMGIGGGWYEHEWRAYGYGFPSPPERLRRLDEGVQIFRQAWTTGTATLHGRHYQVDGAVVRPLPLQEGGIPLWIAGGGEKVTLKIAAKYAQYTNFDGTPEGFAHKSEILRGHCAEVGTDFDAIVRSANYNVAIGRTEAEVQERLGTLRARLEPYVGPEKADGALDAFRGLPAVGTPEQIVENFRALKKQGMTYAILYFPEAAYDTSGIELFEKEVLPELL
>CP024890.1|AUM16364.1|1596015_1597365_-|LLM-class-flavin-dependent-oxidoreductase
MSQSPKQFHLNAFLMGVGHHEAAWRHPRTDARRVLDVAHFQELAQIAERGTLDSVFFADGLAVGPRVEHNAQAIFEPITLLSAMAVVTERIGLIATASTGFNEPFNLARKFASLDHISHGRAGWNIVTSGGADEARNFGYDETPDHAGRYDRAAEFVDVATGLWDSWEDDAVELDVESGRFADPGKVHPVDHDGPRFSVRGPLNTPRSPQGRPVLVQAGSSESGKDFAARYAEAVFTAQRTLAEGQAFYRDLKARVAAVGRDPHSLKVLPGIVPFIGDTEVAAKALEQEFTDLISPAYSLRQLSGMVGVDLTDHALDAPLPPLPPLDRIQGNKSRYELVKNLAENEHLTVRQLIGKLGGGRGHRTFAGTAEQIADDLQLWFEGGAADGFNVMPPYLPGGLEDFVEQVVPILRDRGLFRTEYTSTTLRGHYGLDRPAGRFDAVPARAATA
>CP024890.1|AUM16365.1|1597398_1598271_-|ABC-transporter-permease
MSSPSATLIHPVALDGALAEQRPAPAPPARGAGTGPWIGAFVWRGLKPAVAILAFLAVWEIAPRLGLVDEVFLPPFTVVADAFAQLIGDGRLAEHLGASLSRAVTGFGIAVLVAIPLGVAIGWYRPVAEFLDPILELFRNTAALALLPVFILILGIGETSKVALVTYASTFPILLNTVSGVRTVDPLLVKSARSLGLPSYRLFQKVILPAAVPTIFTGIRMAAASSILVLIAAEMVGAKAGLGYLVTASQLNFQIPNMYAGIVAISLVGLTFNGILVAVERRLSRWRADR
>CP024890.1|AUM16366.1|1598263_1599082_-|ABC-transporter-ATP-binding-protein
MSTTPKLRLEHVTKRFPVRGTDTAFTALDDVSLDVADGEFLVLVGPSGCGKSTLLDLLGGLSSPTSGRILLDGQPISGPGLDRGIVFQQYALLPWRTARHNIEFGLEAKGLPRRQRRERAEHYLELVGLRGFGDRYPHELSGGMKQRVAIARSLAFDPEVLLMDEPFAALDAQTRESLQDELLRIRHETGKTILFITHGIDEAVYLGQRVAVLTSRPGRVEAVVDIDIDRTVDDVRSGEAFRHYRHRIWSLLHSDVERAQNHGAAIQEVHHV
>CP024890.1|AUM16367.1|1600517_1601429_+|RNA-polymerase-sigma-factor-SigJ
MRTAVLADAFEQHRPHLLSVAYRLTGSVADAEDAVQDAWLRLDRADADGIDDLRAWLTTVVGRLCLDRLRSAAVRRENYVGQWLPEPIVTPVGGPSSPDPLEAVVRQEDSRMAAMVVLDTLTPAQRVAFVLHDGFAVPFDEIAAILDVTPASARQLASRGRRAVAAAPPPVPAAEHVEAVQRLMTALASGDLAAVVAALDPDARVIGDAGGTTRTAINVVVGADRFARFFLGLMQRYGAEAFLAGTPALVNGELGFVSAGSPGDGTRRAFAGRVVGCTVRDGRVWAAYDMANPDKLRGVRLDG
>CP024890.1|AUM16368.1|1601439_1601853_+|glyoxalase
MEPRLSFVTLAVADLERTRRFYVDGLGWTPVVDVPGEVLMIQVGPHLVLSLWDEQHFAAEVGPVRRSGVPPVTLAHNVADRADVDRVLDTARRAGADPVSDAVEREWGGYTGYFADPDGFRWEIAWNPGPIGQLVLP
>CP024890.1|AUM16369.1|1601834_1602446_-|carboxymuconolactone-decarboxylase-family-protein
MARIPAVTPAEAGVATKIAYRMARRRFGEVPEPFAVYAHHPALMRASAVHETLVERASTVLPPHVRELAVYRVAWSVGCSWCVDFGTMLQRLDGLDVDRLEHIADYATSDAYSDDERAAIAYADAMTGAGGDGGAAVTVTDEQVADLERRFGRAGVVELTYQIALENMRARMNSALGIHEQGFSTDACRVPWLQDDAAQGSTS

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Crispr_ID: CP024890_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024890_6

4652130-4652226

Orphan

Consensus_repeat	Method
GCGCGGTTCAGCCGGCGCGCACAGCGCGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024890_6

>merge|CP024890|6|4652130-4652226|CRISPRCasFinder
GCGCGGTTCAGCCGGCGCGCAGCGCGGTTCAGCCGGCGCGCACAGCGCGGTTCAGACGGCGCGCACGGCGCGGTTCAGACGGCGCGCACGGCGCGGT

>CP024890|6|6|4652130-4652226|CRISPRCasFinder
GCGCGGTTCAGCCGGCGCGCAGCGCGGTTC	AGCCGGCGCGCACAGCGCGGTTCAGACGGCGCGCACG
GCGCGGTTCAGACGGCGCGCACGGCGCGGT

Protein	Signature genes	Signature genes Name	Protein_function
CP024890.1\|AUM18915.1\|4650046_4650511_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
CP024890.1\|AUM18912.1\|4648401_4649157_+\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|376704
CP024890.1\|AUM18910.1\|4647074_4647695_+\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|376704
CP024890.1\|AUM18927.1\|4661963_4663427_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
CP024890.1\|AUM19996.1\|4655455_4656901_+\|spore-coat-protein-CotH	unknown	unknown	gnl\|CDD\|227642
CP024890.1\|AUM18926.1\|4660610_4661795_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
CP024890.1\|AUM19997.1\|4657151_4657733_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|379324
CP024890.1\|AUM18918.1\|4651349_4652129_+\|putative-protein-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|274733
CP024890.1\|AUM18924.1\|4658584_4659325_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378566
CP024890.1\|AUM18920.1\|4652976_4653498_+\|DUF1992-domain-containing-protein	unknown	unknown	gnl\|CDD\|378159
CP024890.1\|AUM18921.1\|4653731_4654640_+\|VTC-domain-containing-protein	unknown	unknown	gnl\|CDD\|143622
CP024890.1\|AUM18925.1\|4659423_4660605_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379062
CP024890.1\|AUM18909.1\|4646252_4646993_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
CP024890.1\|AUM18914.1\|4649573_4650050_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|153099
CP024890.1\|AUM18917.1\|4651035_4651326_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379642
CP024890.1\|AUM18913.1\|4649330_4649528_+\|[Fe-S]-binding-protein	unknown	unknown	gnl\|CDD\|377304
CP024890.1\|AUM18916.1\|4650556_4651018_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP024890.1\|AUM18922.1\|4654682_4655360_+\|DUF4956-domain-containing-protein	unknown	unknown	gnl\|CDD\|379819
CP024890.1\|AUM18923.1\|4657960_4658377_+\|RNA-polymerase-subunit-sigma-70	unknown	unknown	gnl\|CDD\|236607
CP024890.1\|AUM18911.1\|4647703_4648405_+\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|376704

Protein	Function_ID	Function_description	E-value
CP024890.1\|AUM18915.1\|4650046_4650511_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	2.6065e-22
CP024890.1\|AUM18912.1\|4648401_4649157_+\|AIM24-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	7.91033e-15
CP024890.1\|AUM18910.1\|4647074_4647695_+\|AIM24-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	1.02453e-32
CP024890.1\|AUM18927.1\|4661963_4663427_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
CP024890.1\|AUM19996.1\|4655455_4656901_+\|spore-coat-protein-CotH	gnl\|CDD\|227642	COG5337, CotH, Spore coat assembly protein [Cell envelope biogenesis, outer membrane].	3.27891e-115
CP024890.1\|AUM18926.1\|4660610_4661795_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	9.55087e-52
CP024890.1\|AUM19997.1\|4657151_4657733_+\|GTP-binding-protein	gnl\|CDD\|379324	pfam13671, AAA_33, AAA domain. This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.	2.03235e-07
CP024890.1\|AUM18918.1\|4651349_4652129_+\|putative-protein-N(5)-glutamine-methyltransferase	gnl\|CDD\|274733	TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. [Protein synthesis, Ribosomal proteins: synthesis and modification].	3.05053e-111
CP024890.1\|AUM18924.1\|4658584_4659325_+\|hypothetical-protein	gnl\|CDD\|378566	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein. SAP is a transmembrane transport protein with six predicted transmembrane helices, with a hydrophilic domain between helices 3 and 4. This hyrodphobic region is highly variable among identified Gap-like (GPL, peptidoglycolipid, addressing protein) proteins and may be involved in substrate recognition. SAP also belongs to the LysE protein superfamily (pfam01810), whose members have been implicated in small molecule transport in bacteria. Other Gap proteins export metabolites across the cell membrane so it is possible that Sap specifically may be involved in transport of sulfolipid-1 across the membrane.	6.19819e-28
CP024890.1\|AUM18920.1\|4652976_4653498_+\|DUF1992-domain-containing-protein	gnl\|CDD\|378159	pfam09350, DUF1992, Domain of unknown function (DUF1992). This family of proteins are functionally uncharacterized.	2.16492e-22
CP024890.1\|AUM18921.1\|4653731_4654640_+\|VTC-domain-containing-protein	gnl\|CDD\|143622	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins. Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2, -3, and -4 contain polyP polymerase domains. For S. cerevisiae VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.	1.79739e-61
CP024890.1\|AUM18925.1\|4659423_4660605_+\|ATP-binding-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	6.98561e-10
CP024890.1\|AUM18909.1\|4646252_4646993_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	6.09873e-53
CP024890.1\|AUM18914.1\|4649573_4650050_+\|bacterioferritin	gnl\|CDD\|153099	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) bestowing ferroxidase activity.	6.87203e-73
CP024890.1\|AUM18917.1\|4651035_4651326_+\|N-acetyltransferase	gnl\|CDD\|379642	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase. This family of GCN5-related N-acetyl-transferases bind both CoA and acetyl-CoA. They are characterized by highly conserved glycine, a cysteine residue in the acetyl-CoA binding site near the acetyl group, their small size compared with other GNATs and a lack of of an obvious substrate-binding site. It is proposed that they transfer an acetyl group from acetyl-CoA to one or more unidentified aliphatic amines via an acetyl (cysteine) enzyme intermediate. The substrate might be another macromolecule.	6.42479e-32
CP024890.1\|AUM18913.1\|4649330_4649528_+\|[Fe-S]-binding-protein	gnl\|CDD\|377304	pfam04324, Fer2_BFD, BFD-like [2Fe-2S] binding domain. The two Fe ions are each coordinated by two conserved cysteine residues. This domain occurs alone in small proteins such as Bacterioferritin-associated ferredoxin (BFD). The function of BFD is not known, but it may may be a general redox and/or regulatory component involved in the iron storage or mobilisation functions of bacterioferritin in bacteria. This domain is also found in nitrate reductase proteins in association with Nitrite and sulphite reductase 4Fe-4S domain (pfam01077), Nitrite/Sulfite reductase ferredoxin-like half domain (pfam03460) and Pyridine nucleotide-disulphide oxidoreductase (pfam00070). It is also found in NifU nitrogen fixation proteins, in association with NifU-like N terminal domain (pfam01592) and NifU-like domain (pfam01106).	5.90478e-07
CP024890.1\|AUM18916.1\|4650556_4651018_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.6229e-14
CP024890.1\|AUM18922.1\|4654682_4655360_+\|DUF4956-domain-containing-protein	gnl\|CDD\|379819	pfam16316, DUF4956, Domain of unknown function (DUF4956). This family consists of uncharacterized proteins around 220 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.	1.6739e-25
CP024890.1\|AUM18923.1\|4657960_4658377_+\|RNA-polymerase-subunit-sigma-70	gnl\|CDD\|236607	PRK09648, PRK09648, RNA polymerase sigma factor ShbA.	3.4273e-22
CP024890.1\|AUM18911.1\|4647703_4648405_+\|AIM24-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	2.81426e-31

>CP024890.1|AUM18918.1|4651349_4652129_+|putative-protein-N(5)-glutamine-methyltransferase
MPPPPDVTAVAATLRRAGCVFAEDEARLLIDAARTPGDLADSVRRRAAGEPLEHVLGWTEFRGLRIHVTPGVFVPRRRSEFLVECAVALAAPGVVVDLCCGSGALGAAVAAAVADVELHATDLDPAAVECAGRNLAAFGGHVYEGDLYDPLPAGLRGRVHLLLANVPYVPTADLALLPADAREHEARIALDGGADGLDVLRRVAAAAGRWLAPGGHLLVESSTQQADGIAACFDRNGLTPQVAHSDDDFATVVVGTAPR
>CP024890.1|AUM18917.1|4651035_4651326_+|N-acetyltransferase
MSDPSVVAVHNPQRQRYELRDGDTVVGYTQYHPDGDVQLVFDHTEVDNAYSGRGLSSTLVRFALDDVRARGKRVVAICPFVDGFIDKHPEYKDLAD
>CP024890.1|AUM18916.1|4650556_4651018_+|MarR-family-transcriptional-regulator
MTETRWLSDDEQRTWRAYLDSTRLLMNALDRQLTRDSGMSLTDYELLVALSEAPGRRLRMRALADAVVTTRSGVTRAISRLVDAGWVRRVECDEDKRGMLAELTDAGAAKLAQASPGHVEAVRSYVFDLLGPRDVTRFGDTYTAMRTHLLENT
>CP024890.1|AUM18915.1|4650046_4650511_+|carboxymuconolactone-decarboxylase-family-protein
MSDKRVPIDKQTRPVYRAQIAVAQAIRQATADAGLGRRLVELVNIRVSQINGCAYCLDVHVRDALREGETTQRLAVLRAWRDTDLFTEQEQAALTLAESITELPDSRAQDRDYAFARARLTEDQLSAIAWVAVAMNTFNRVSIVSRHPVRPPQE
>CP024890.1|AUM18914.1|4649573_4650050_+|bacterioferritin
MKGDKKVIEYLNEQLTAELTAINQYFLHSKMQDNNGWTKLAAHTRAESFEEMRHAETLTDRILFLEGLPNYQRLGTLRLGETVKEMFEADLQVEIEARDRLRKGAEYMRSVHDITSARIFEEILANEEEHIDYLETQLGLLEQLGEPLYISVHVSPPE
>CP024890.1|AUM18913.1|4649330_4649528_+|[Fe-S]-binding-protein
MIVCSCHALSHRHIEAHIAAGARCTREIGAACRAGTDCGRCVRNISAIVRASRERDERIELETAV
>CP024890.1|AUM18912.1|4648401_4649157_+|AIM24-family-protein
MSVVLNPSHLVGSDNLPGNHYAFCIDLQSPWFLSKGAMIAYYGQVQFTSLTHGLQGQLLQMVAHQFSAPLYMGDYVVAEGYGKLILGDRGYDINSYDLDDGNLTIRAANLLAFEPGLSLNQSIVPGFLTLIGTGKFLASSNGPVMFAEPPLRVDPEALVGWADCPSPSHHYDEAWVNGFVAAGARMFGVQSGEERQFDFTGAGTVLVQSSEKVIDDSAVVRTIEGQLPGLTPGGLQRINQVVASQLQSQQH
>CP024890.1|AUM18911.1|4647703_4648405_+|AIM24-family-protein
MFSKINGKVVKVDLNQSGPVVARRGAMLFYTGMVQFAPHQVPGAGGMPGMGGIAGMAGRMMQGEHERTMLAQGNGVVHYGFRGLEVHVVDLSAGGDLRVEASRLLGYTASLQSSVVSMAAPPAGGGGGGGGFLGALRNAATGMVTGTGMFTTQLSGRGTAVLLGHGGFLELQVGGPAPVVVDPQSFIAASGPVRTELKSSMSWRNAGRSGGEGLQLECTGQGIVYVQASEEKL
>CP024890.1|AUM18910.1|4647074_4647695_+|AIM24-family-protein
MRLVEKSKRVIEAHLNNTSVRALSGSMVAYEGQVQFKSAGFGGGEGVLAGLRQRATGEGLSLMECTGNGVVYLAHQGQDVTVLELNNETLQVESEQLLALNGNLGTNVTFAGVRGNMSGQGLFTTTVTGSGQVALLSAGGPLIHLEVSPQYPLVVDPDAFVCAKGQLSQSFVTDVSWRTFVGQGSGEAFSLRWDGMGVVSIQPAER
>CP024890.1|AUM18909.1|4646252_4646993_-|IclR-family-transcriptional-regulator
MPDAPDRSLLGRAFAVLGAFTAERPRLTQSELSRRTGLPLPTVFRLCGQLVDAGALERRADGSYQIGVRVWELGALAPRAHGLRQVAMPYLEDLFDATRENVQLVVREGLEALYVERLSARGAVPVVGRAGGRLPLHASSGGLVLLAHGGTELLQEVLDAGLERFTPATIVDESRLRRVLDDIRRTGVVIAREYLNVGTMAMAAPIRERSGRVVAAVSVVVSIEADPAPLIPAMRAAASGISRRLT
>CP024890.1|AUM18920.1|4652976_4653498_+|DUF1992-domain-containing-protein
MTERKRPDITFESWIERQIRVAQERGDFDNLRGAGKPIPHRSDDELWWVKDYLRREGLSTEALLPPPLQLRKEVERLRDTVRDVPSEPAVRQIVRELNRRIVDCLRAPSGPLVPIHRVDPEEVVRQWATDRAELRSQRAERAAAAAAALREYTAEPPRRRWWHRVLGIRPAGT
>CP024890.1|AUM18921.1|4653731_4654640_+|VTC-domain-containing-protein
MGVFDRFRTSTPQDMPPTDAVPTAPTGYRQTAGSLHAFNRYEIKYFVDELKVPELRRELAARMDTDPYSPHGGYPVTSLYYDTPDLRFYWEKIEGLRFRRKLRMRLYGNPSECTDDTPVHIEVKQRVNRVTQKRRIAMPYGTAQRWLDGRQEVGCDPPQRPFVHEVTTLIGNLDLRPIVTTGYLREAFVGREADLGLRVTIDHKVHGRDGDFGFASGAQNRFVVPPKLAIVELKANERVPYWATDLTARMDMSVVRVSKYCQSVEAFGLAPRSRFGAPGLVLPQGFDGRVPTGLLETTTTVP
>CP024890.1|AUM18922.1|4654682_4655360_+|DUF4956-domain-containing-protein
MNFDLQDLSGTFTTFDIIVSLSLSFVLASIIGWVYRHTHKNVSYSQSYVQTLVLVGMVIALIMLVVGSNIARAFALVGALSVVRFRNAIKETRDVGFIFLVMAVGMTTGTRFYLLAIAATIAICLVLLIMSKFNWFELDVRRQVVKVQVPPEQQYSAMVEDVLVRYCTEFELVSTESVRSGALTELYYTAQLKKDAKPNELISALSAVNTGQRVTVLTGYDQTDI
>CP024890.1|AUM19996.1|4655455_4656901_+|spore-coat-protein-CotH
MFVAFVTILATVFGATRIRPYLTGDPTIIASEITDNITGTVDLFDASVPHELSVEITDAEYDEMITAFQSTGEKKWVTADVTLDGTLITDVSVRLKGNSTLMGLRGTDTRVGGQGVAPPAGLELPEGFEPPATGGMSQATADDPTSLPLLVSFDENADGRAYQGMTEISVRPGSPVLNEAMALSLTAETEQPTQRYAYTVYSVNGSATTTRLLLEHPDDTYANSLFDSEGYLYKADASSRFEYVGDDQSDYADQFEQINAVGTGNLQPIVRFLEWLDSAGDEEFDAHLSEWVDVDSFARYVATQNLLVNGDDMSGPGQNYYLWYDLGTARLSVVSWDLNLAMQGDATTGPHDTVSMGPGARGGAGQDGRGTPPAGVGAVAQPRAMPSDAAAPPGDGRMQSGNALKTRFLGSDAFTGVYEDAYRELYDQMYGSGRALEILDTLVATVPVSDGLPADSLRSSADSMRSWIEQRTAALAELRDS
>CP024890.1|AUM19997.1|4657151_4657733_+|GTP-binding-protein
MVGGIPGAGKSTLLRRIEHDIPGLTVLDPERRAEGLAAALPPDLPYRRYRPLVHLMHTLDVVRTLLAGPHRSEGPVAVHDTATRSRRRDWTARLARRRGWTPVLVFLDVPRDVAQAGQHARGRVVNESSFARHWHRWTVLRSHLTDEDDATAGSPWDQVVVTTRDNAKSRVCDVLTQDETVPCELGGGSPVPQ
>CP024890.1|AUM18923.1|4657960_4658377_+|RNA-polymerase-subunit-sigma-70
MRPWIKQRTAALDPENPDAVRSDPRNAAPVGDVPDVPWGPEAPETHARRRYERRRIDALLDVLTDRQRDILHLRVVHSMSTAETAAVLHITPGAVRLGQHRALSRLRVALTRPAGEPITCRDTVVPLDARRRDATRPA
>CP024890.1|AUM18924.1|4658584_4659325_+|hypothetical-protein
MSVSTGRGCDYSSSEIDDRRSEGWLMAGAIGQSLPIAVGLLLAAMPIVMLSVLLVTKRPLRVSYAFVGGWFAGLLVVGAVVIAVADVIMLSDEPTWWAAAAKLVLGVVLVLLAVRKWYSRPQPGEESTVPGWMAAAQTMTARRALALGFLFAAANPKNLALVAAGAVVIADATARVPEQIVALIVFAVVASLGVAAPPAVRGVFADRADRALAAADEWMTRQHTVIMAAVLLILGLILIGNGIAGL
>CP024890.1|AUM18925.1|4659423_4660605_+|ATP-binding-protein
MDLELNPFKPGSGLRPPALEGRDEQIGAFELLVARSKRQNYDRGLILSGLRGVGKTTLLNALVEHADRQGWLTIALEARPNEAGTSAVRAKLSQELTVGLRRYSRKHRIQHAIDPLIDLARGFSLGLGLGLGPATASFSLDQPPAASGDIDLDLEELVEAITAELRPRSSAFGLFVDEMQDLDSDLLSALLAVQHRASQREWPFFLIGAGLPNLPAVLAGNRSYAERQFLYSTIGPLSPTAAADALRIPVRRQGGDFTDDALAVLVQASGGYPYFLQEFGKAIWNIAPHSPFQLEDAELAVEVGCRHLDEGFFPSRWNRATDRERRYLAALAAAGEEAPRSGKVAQLMGSTATGVSDVRNSAIRKGLIWAPEHGRIAFTVPGMADFIRRQPAE
>CP024890.1|AUM18926.1|4660610_4661795_-|ROK-family-protein
MSRSSSAPATAGEVFALVRAGAATTRSEIGHHTGLSRTAVAARVAALQDLGLVVETEEGPSTGGRPPLTLTFGAGAGIVLVVAIGRSRTQLAVCDLAGDLLRTEDLEQEIGASPGELMPKVAAHLADLRAALGPGAPRTVGIGVSLPGTVDTARGCSLDSPMMAGWDGVELQPFLADLGGAPVFVDNDANVMVLAERLGERRKFDDMLLIKASTGLGAGIVSGGVLQRGAVGAAGEIGHTKTAAAQGVLCRCGDVGCVEAIAGGWALVRDLQEQGRDVTHIRDVVALAVGGDAEARRMIRDSGRRIGEVIAGAVNLLDPAVLVVGGDMAEAYDVFVAGLRETLYRDAVSVATRALQILPWSHGDRSGMIGCASMALDQVLSVRAVDRMVAERGR
>CP024890.1|AUM18927.1|4661963_4663427_+|glucose-6-phosphate-dehydrogenase
MSPAAPCTVVVFGGTGDLAVRKLLPALYLRDRDGQLPPGSRIVGAARAGLDTDGYRDKVRGELARFVPAPLLDAGTLTRFLDRLDYVSLDFAGGDDWSALHDVLPPDSVRVFYLACAPSLFGPISHHLARHGLVEPTSRVVLEKPIGRDLASAHAINDAVGEVFDESQIFRIDHYLGKESVQNLLVTRFANTLLEPLWNSTWIDHVQITVSESLGVGTRGGYYDTSGALRDMLQNHLLQVLCLVAMEPPTVVDRETVRDEKLKVLQALRPMTAEDVERFTVTGQYGPGLVDGGAVPGYRDEVENPDSRTETFVAVRAEVRNWRWAGVPFYLRTGKRLEKRSSEIVVQFKDVPHPMFPRAEGATEPNRLVIRLQPDEGICLHMTAKEPGPGGIRLRPVSLDLNYVDAFDRPSPDAYERLLMDVVRGDPTLFMRRDEVETAWAWVEPILQTWDRTGRMPRRYPAGTSGPTDATTLIERDGRAWYEGTSV

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP024890_1	1.1\|1592800\|17\|CP024890\|CRISPRCasFinder	1592800-1592816	17	CP024890.1	3280347-3280363	1	0.941
CP024890_1	1.1\|1592800\|17\|CP024890\|CRISPRCasFinder	1592800-1592816	17	CP024890.1	4747183-4747199	1	0.941
CP024890_1	1.1\|1592800\|17\|CP024890\|CRISPRCasFinder	1592800-1592816	17	CP024892.1	186031-186047	2	0.882

1. spacer 1.1|1592800|17|CP024890|CRISPRCasFinder matches to position: 3280347-3280363, mismatch: 1, identity: 0.941

cgaccacgcgatccggc	CRISPR spacer
cgaccacgcgatcctgc	Protospacer
************** **

2. spacer 1.1|1592800|17|CP024890|CRISPRCasFinder matches to position: 4747183-4747199, mismatch: 1, identity: 0.941

cgaccacgcgatccggc	CRISPR spacer
cggccacgcgatccggc	Protospacer
**.**************

3. spacer 1.1|1592800|17|CP024890|CRISPRCasFinder matches to position: 186031-186047, mismatch: 2, identity: 0.882

cgaccacgcgatccggc	CRISPR spacer
cgaactcgcgatccggc	Protospacer
*** * ***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP024890_2	2.3\|1685515\|34\|CP024890\|CRISPRCasFinder	1685515-1685548	34	NZ_CP049160	Caballeronia sp. SBC1 plasmid pSBC1_4, complete sequence	261975-262008	8	0.765
CP024890_4	4.1\|2549323\|31\|CP024890\|CRISPRCasFinder	2549323-2549353	31	NZ_CP021083	Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence	41927-41957	8	0.742
CP024890_4	4.1\|2549323\|31\|CP024890\|CRISPRCasFinder	2549323-2549353	31	MT522001	Microbacterium phage Karate, complete genome	41572-41602	8	0.742
CP024890_4	4.1\|2549323\|31\|CP024890\|CRISPRCasFinder	2549323-2549353	31	NC_005262	Burkholderia cepacia phage Bcep22, complete genome	54330-54360	8	0.742
CP024890_2	2.3\|1685515\|34\|CP024890\|CRISPRCasFinder	1685515-1685548	34	MH673672	Thermus phage phiFa, complete genome	22813-22846	9	0.735
CP024890_4	4.1\|2549323\|31\|CP024890\|CRISPRCasFinder	2549323-2549353	31	NC_019917	Burkholderia phage BcepMigl, complete genome	53620-53650	9	0.71
CP024890_4	4.1\|2549323\|31\|CP024890\|CRISPRCasFinder	2549323-2549353	31	FJ937737	Burkholderia cenocepacia phage BcepIL02, complete genome	53288-53318	9	0.71
CP024890_4	4.1\|2549323\|31\|CP024890\|CRISPRCasFinder	2549323-2549353	31	NC_012743	Burkholderia phage BcepIL02, complete genome	53288-53318	9	0.71
CP024890_4	4.1\|2549323\|31\|CP024890\|CRISPRCasFinder	2549323-2549353	31	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	210364-210394	9	0.71

1. spacer 2.3|1685515|34|CP024890|CRISPRCasFinder matches to NZ_CP049160 (Caballeronia sp. SBC1 plasmid pSBC1_4, complete sequence) position: , mismatch: 8, identity: 0.765

tcttcggcgggatgtcgagtttgaagggggtggc	CRISPR spacer
tggtcggtgggatgtcgtgtttgaaggttggcgc	Protospacer
*  ****.********* *********  *  **

2. spacer 4.1|2549323|31|CP024890|CRISPRCasFinder matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
ggcgcgcgccacgtcgtccaggcgcaccgac	Protospacer
****************** ***.   *.  *

3. spacer 4.1|2549323|31|CP024890|CRISPRCasFinder matches to MT522001 (Microbacterium phage Karate, complete genome) position: , mismatch: 8, identity: 0.742

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
gacgcgcgccacgtcgtcaatggcgttcttg	Protospacer
*.****************** * ***....

4. spacer 4.1|2549323|31|CP024890|CRISPRCasFinder matches to NC_005262 (Burkholderia cepacia phage Bcep22, complete genome) position: , mismatch: 8, identity: 0.742

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
gaggcgcgccacgtcgtcgaggtcgagcacg	Protospacer
*. ***************.******  . *

5. spacer 2.3|1685515|34|CP024890|CRISPRCasFinder matches to MH673672 (Thermus phage phiFa, complete genome) position: , mismatch: 9, identity: 0.735

tcttcggcgggatgtcgagtttgaagggggtggc	CRISPR spacer
cgtactccccgatgacgagtttgaaggtggtggc	Protospacer
. * *  *  **** ************ ******

6. spacer 4.1|2549323|31|CP024890|CRISPRCasFinder matches to NC_019917 (Burkholderia phage BcepMigl, complete genome) position: , mismatch: 9, identity: 0.71

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
caggcgcgccacgtcgtcgaggtcgagcacg	Protospacer
 . ***************.******  . *

7. spacer 4.1|2549323|31|CP024890|CRISPRCasFinder matches to FJ937737 (Burkholderia cenocepacia phage BcepIL02, complete genome) position: , mismatch: 9, identity: 0.71

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
caggcgcgccacgtcgtcgaggtcgagcacg	Protospacer
 . ***************.******  . *

8. spacer 4.1|2549323|31|CP024890|CRISPRCasFinder matches to NC_012743 (Burkholderia phage BcepIL02, complete genome) position: , mismatch: 9, identity: 0.71

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
caggcgcgccacgtcgtcgaggtcgagcacg	Protospacer
 . ***************.******  . *

9. spacer 4.1|2549323|31|CP024890|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
atggcgcgccaagtggtcaaggtcgtggtca	Protospacer
.  ******** ** ***********  .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

209917 : 218101

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM15206.1\|209917_211546_-	ABC transporter ATP-binding protein	A0A2K9L0W2	Tupanvirus	2.5e-38	27.5
AUM15207.1\|211652_212459_+	NAD(P)-dependent oxidoreductase	A0A0M4JSW6	Mollivirus	2.9e-08	33.9
AUM15208.1\|212462_213587_+	lycopene cyclase	NA	NA	NA	NA
AUM15209.1\|213639_214614_+	Ku protein	A0A249XRB2	Mycobacterium_phage	2.3e-52	43.2
AUM19690.1\|214658_215051_-	MarR family transcriptional regulator	NA	NA	NA	NA
AUM15210.1\|215167_215548_-	DUF59 domain-containing protein	NA	NA	NA	NA
AUM15211.1\|215547_216036_-	SUF system NifU family Fe-S cluster assembly protein	A0A0K1LSF9	Mycobacterium_phage	2.4e-21	44.4
AUM15212.1\|216035_217289_-	cysteine desulfurase	Q2XUY6	environmental_halophage	4.3e-99	45.4
AUM15213.1\|217303_218101_-	Fe-S cluster assembly ATPase SufC	W8CYL7	Bacillus_phage	3.2e-07	27.7

DBSCAN-SWA_2

1698013 : 1709770

Mycobacterium_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM16456.1\|1698013_1699054_-	hypothetical protein	A0A2R3ZZ20	Mycobacterium_phage	1.6e-59	43.5
AUM16457.1\|1699050_1699353_-	hypothetical protein	NA	NA	NA	NA
AUM16458.1\|1699361_1700105_-	hypothetical protein	A0A2P1JQC4	Mycobacterium_phage	1.5e-14	36.5
AUM16459.1\|1700191_1701925_-	hypothetical protein	Q1A0A4	Mycobacterium_phage	1.3e-66	36.8
AUM16460.1\|1702536_1702806_-	NrdH-redoxin	A0A2H4PFR8	Mycobacterium_phage	8.5e-13	41.0
AUM16461.1\|1702805_1703048_-	hypothetical protein	A0A076G7Z4	Mycobacterium_phage	6.4e-20	63.3
AUM16462.1\|1703050_1705693_-	hypothetical protein	D4P7Y7	Rhodococcus_phage	4.5e-98	38.4
AUM16463.1\|1705843_1707559_-	hypothetical protein	A0A0S2MU76	Streptomyces_phage	8.5e-58	34.1
AUM16464.1\|1707562_1707889_-	hypothetical protein	G3MC36	Mycobacterium_phage	8.4e-07	33.1
AUM16465.1\|1708030_1709770_-	hypothetical protein	D4P7X6	Rhodococcus_phage	3.3e-126	44.5

DBSCAN-SWA_3

1713296 : 1724090

Gordonia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM16468.1\|1713296_1714522_-\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	8.2e-87	56.1
AUM16469.1\|1714839_1715352_-	hypothetical protein	G8I4L2	Mycobacterium_phage	2.3e-11	45.0
AUM16470.1\|1715826_1716222_-	hypothetical protein	A0A160DCT3	Gordonia_phage	8.9e-27	55.3
AUM16471.1\|1716218_1716602_-	hypothetical protein	E0YQ53	Mycobacterium_phage	5.4e-21	46.2
AUM16472.1\|1716598_1718293_-	hypothetical protein	A0A2H4J7B1	uncultured_Caudovirales_phage	2.6e-51	33.4
AUM16473.1\|1718938_1719169_-	hypothetical protein	A0A2H4JBI3	uncultured_Caudovirales_phage	8.5e-06	45.7
AUM16474.1\|1719165_1719408_-	hypothetical protein	NA	NA	NA	NA
AUM16475.1\|1719575_1720229_-	hypothetical protein	M9MUE6	Rhodococcus_phage	4.3e-18	37.0
AUM16476.1\|1720303_1720486_-	hypothetical protein	A0A1B3B1U0	Gordonia_phage	6.7e-06	47.3
AUM16477.1\|1720478_1721015_-	hypothetical protein	NA	NA	NA	NA
AUM16478.1\|1721065_1721293_-	hypothetical protein	NA	NA	NA	NA
AUM16479.1\|1721285_1721624_-	hypothetical protein	NA	NA	NA	NA
AUM16480.1\|1721620_1721830_-	hypothetical protein	NA	NA	NA	NA
AUM16481.1\|1721984_1722206_-	hypothetical protein	NA	NA	NA	NA
AUM16482.1\|1722229_1722679_-	hypothetical protein	NA	NA	NA	NA
AUM16483.1\|1722681_1722960_-	hypothetical protein	NA	NA	NA	NA
AUM16484.1\|1723190_1724090_-	hypothetical protein	A0A088FSQ7	Mycobacterium_phage	8.6e-118	73.2

DBSCAN-SWA_4

2790095 : 2809744

Skermania_phage(30.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM17345.1\|2790095_2790833_+	excisionase	G9FGX8	Rhodococcus_phage	2.2e-18	38.2
AUM17346.1\|2791007_2791208_+	hypothetical protein	G8I6R4	Mycobacterium_virus	1.9e-09	54.0
AUM17347.1\|2791279_2791660_+	HicB family toxin-antitoxin system	A0A142KC36	Gordonia_phage	9.8e-23	45.4
AUM17348.1\|2791735_2792071_-	hypothetical protein	NA	NA	NA	NA
AUM17349.1\|2792067_2793045_-	metallopeptidase	G9FHQ8	Rhodococcus_virus	4.5e-64	54.0
AUM17350.1\|2793041_2793503_-	M23 family peptidase	A0A1P8D5Q3	Corynebacterium_phage	2.7e-43	66.7
AUM17351.1\|2793853_2794255_-	hypothetical protein	A0A2P1JRG4	Mycobacterium_phage	7.7e-10	36.4
AUM17352.1\|2794316_2794958_-	hypothetical protein	A0A0N7C8S3	Skermania_phage	3.2e-18	37.6
AUM17353.1\|2794924_2795506_-	hypothetical protein	A0A0N6WG45	Skermania_phage	4.0e-44	45.1
AUM17354.1\|2795514_2796132_-	hypothetical protein	A0A0N7CC98	Skermania_phage	3.7e-56	49.5
AUM17355.1\|2796138_2796792_-	hypothetical protein	A0A0N7CD65	Skermania_phage	9.8e-31	37.8
AUM17356.1\|2796793_2798467_-	hypothetical protein	A0A0N7CDI2	Skermania_phage	1.0e-95	53.6
AUM17357.1\|2798499_2798886_-	hypothetical protein	A0A286MQD2	Mycobacterium_phage	2.5e-26	53.9
AUM17358.1\|2798986_2800228_-	sugar transferase	A0A0N7CBN2	Skermania_phage	1.9e-136	53.8
AUM17359.1\|2800256_2806061_-	hypothetical protein	D4P802	Rhodococcus_phage	3.0e-155	46.1
AUM17360.1\|2806091_2806283_-	hypothetical protein	NA	NA	NA	NA
AUM17361.1\|2806297_2806762_-	hypothetical protein	F1B2Q3	Tsukamurella_phage	2.8e-19	50.6
AUM19879.1\|2806827_2807175_-	hypothetical protein	D4P800	Rhodococcus_phage	4.6e-35	68.2
AUM17362.1\|2807233_2807566_-	hypothetical protein	A0A1J0MDP6	Mycobacterium_phage	7.0e-09	38.2
AUM17363.1\|2807567_2808095_-	hypothetical protein	F1B2Q0	Tsukamurella_phage	1.9e-48	55.2
AUM19880.1\|2808091_2808745_-	hypothetical protein	D4P7Z7	Rhodococcus_phage	1.6e-65	57.1
AUM17364.1\|2808916_2809744_+	acyltransferase	A0A160DCT9	Gordonia_phage	2.0e-28	41.5

DBSCAN-SWA_5

2814052 : 2829318

Mycobacterium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM17366.1\|2814052_2814868_-	hypothetical protein	A0A0N7CDA1	Skermania_phage	1.1e-108	70.4
AUM17367.1\|2814942_2815317_-	hypothetical protein	G9FI12	Nocardia_phage	1.6e-06	32.7
AUM17368.1\|2815504_2815780_-	hypothetical protein	NA	NA	NA	NA
AUM17369.1\|2815795_2816164_-	hypothetical protein	D4P7Z1	Rhodococcus_phage	1.2e-09	51.4
AUM17370.1\|2816175_2816952_-	hypothetical protein	G8I7Y1	Mycobacterium_phage	3.1e-47	43.9
AUM17371.1\|2817071_2818814_-	hypothetical protein	F1B2P2	Tsukamurella_phage	3.2e-177	73.8
AUM17372.1\|2818976_2819168_-	hypothetical protein	NA	NA	NA	NA
AUM17373.1\|2819169_2821548_-	hypothetical protein	D4P7Y7	Rhodococcus_phage	1.0e-218	52.4
AUM17374.1\|2821547_2823335_-	hypothetical protein	G8I7X7	Mycobacterium_phage	3.4e-134	49.8
AUM17375.1\|2823506_2823728_-	hypothetical protein	NA	NA	NA	NA
AUM17376.1\|2823732_2824059_-	hypothetical protein	W8ECD8	Mycobacterium_phage	9.3e-14	38.6
AUM17377.1\|2824092_2825730_-	hypothetical protein	G8IBP3	Mycobacterium_phage	3.0e-161	55.9
AUM19881.1\|2825732_2825975_-	hypothetical protein	A0A222ZH98	Arthrobacter_phage	3.3e-08	40.6
AUM17378.1\|2826147_2826447_-	hypothetical protein	G8I4L2	Mycobacterium_phage	8.5e-06	43.3
AUM17379.1\|2826652_2827024_-	hypothetical protein	NA	NA	NA	NA
AUM17380.1\|2827020_2827215_-	hypothetical protein	NA	NA	NA	NA
AUM17381.1\|2827202_2827730_-	hypothetical protein	A0A0R8V9Z3	Thermobifida_phage	3.2e-08	36.6
AUM17382.1\|2827722_2828571_-	hypothetical protein	E0YQ62	Mycobacterium_phage	1.6e-17	35.6
AUM17383.1\|2828946_2829318_-	hypothetical protein	G8I4J6	Mycobacterium_phage	3.2e-42	71.4

DBSCAN-SWA_6

3841287 : 3904587

Gordonia_phage(30.0%)

capsid,tRNA,terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM19938.1\|3841287_3841755_-\|tRNA	tRNA-specific adenosine deaminase	NA	NA	NA	NA
AUM18189.1\|3841834_3843091_-	lipase	NA	NA	NA	NA
AUM18190.1\|3843262_3843742_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
AUM18191.1\|3843776_3844940_-\|transposase	transposase	A0A1D8ETH9	Propionibacterium_phage	4.6e-132	64.2
AUM18192.1\|3845065_3845896_+	short-chain dehydrogenase	NA	NA	NA	NA
AUM18193.1\|3845975_3847046_+	osmotically inducible protein C	NA	NA	NA	NA
AUM18194.1\|3847066_3848056_-	oligopeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-17	35.7
AUM18195.1\|3848052_3849039_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-18	29.8
AUM18196.1\|3849035_3849941_-	ABC transporter permease	NA	NA	NA	NA
AUM18197.1\|3849937_3850885_-	ABC transporter permease	NA	NA	NA	NA
AUM18198.1\|3850938_3852474_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUM18199.1\|3852512_3854036_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUM18200.1\|3854086_3855631_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUM18201.1\|3855778_3856654_-	alpha/beta hydrolase	NA	NA	NA	NA
AUM18202.1\|3856675_3857107_-	TIGR03618 family F420-dependent PPOX class oxidoreductase	NA	NA	NA	NA
AUM18203.1\|3857111_3858143_-	phospholipase	NA	NA	NA	NA
AUM18204.1\|3858502_3858757_+	hypothetical protein	NA	NA	NA	NA
AUM18205.1\|3858787_3859378_-	dCTP deaminase	I4AZP2	Saccharomonospora_phage	3.9e-79	75.5
AUM19939.1\|3859469_3860266_-\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
AUM18206.1\|3860341_3861505_+	alpha/beta hydrolase	NA	NA	NA	NA
AUM18207.1\|3861545_3861923_-	MerR family transcriptional regulator	NA	NA	NA	NA
AUM18208.1\|3862127_3863669_+	sodium-independent anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	2.4e-120	54.0
AUM18209.1\|3863695_3864313_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AUM18210.1\|3864403_3865225_+	DUF2236 domain-containing protein	NA	NA	NA	NA
AUM18211.1\|3865175_3866453_-	alpha/beta hydrolase	NA	NA	NA	NA
AUM18212.1\|3867384_3868029_+	hypothetical protein	A0A1D8EW93	Mycobacterium_phage	7.2e-10	41.9
AUM18213.1\|3868155_3868650_-	hypothetical protein	NA	NA	NA	NA
AUM18214.1\|3869903_3870278_-	hypothetical protein	NA	NA	NA	NA
AUM18215.1\|3870351_3870618_-	hypothetical protein	A0A2H4J779	uncultured_Caudovirales_phage	1.6e-16	60.0
AUM18216.1\|3870742_3871971_-\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	1.8e-86	55.8
AUM19940.1\|3872008_3872959_-	metallopeptidase	A0A1S5VYA1	Rhodococcus_phage	2.3e-60	50.4
AUM18217.1\|3873372_3873627_-	hypothetical protein	NA	NA	NA	NA
AUM18218.1\|3873636_3874692_-	hypothetical protein	A0A222ZNG3	Mycobacterium_phage	7.2e-15	28.6
AUM19941.1\|3874759_3875555_+\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
AUM18219.1\|3875579_3876629_-	hypothetical protein	A0A222ZM91	Mycobacterium_phage	5.8e-09	26.6
AUM18220.1\|3876813_3878145_-	hypothetical protein	A0A0E3T897	Gordonia_phage	1.3e-66	36.2
AUM18221.1\|3878138_3878963_-	hypothetical protein	NA	NA	NA	NA
AUM18222.1\|3878981_3884018_-	hypothetical protein	A0A1B3B020	Gordonia_phage	6.6e-58	41.6
AUM18223.1\|3884064_3884475_-	hypothetical protein	NA	NA	NA	NA
AUM18224.1\|3884487_3885159_-	hypothetical protein	A0A159B6I6	Gordonia_phage	2.2e-09	42.0
AUM18225.1\|3885291_3885630_-	hypothetical protein	Q855G6	Mycobacterium_virus	2.5e-09	50.0
AUM18226.1\|3885921_3886218_-	hypothetical protein	A0A1D8EX57	Mycobacterium_phage	4.0e-16	47.5
AUM18227.1\|3886280_3887741_-	hypothetical protein	NA	NA	NA	NA
AUM18228.1\|3888064_3888565_-	hypothetical protein	NA	NA	NA	NA
AUM18229.1\|3888911_3889364_-	hypothetical protein	G9FH92	Rhodococcus_phage	6.0e-19	38.8
AUM18230.1\|3889360_3889693_-	hypothetical protein	K4HYD6	Streptomyces_phage	9.8e-11	39.4
AUM18231.1\|3889705_3890044_-	hypothetical protein	A0A142KB39	Gordonia_phage	3.9e-07	34.0
AUM18232.1\|3890037_3890457_-	hypothetical protein	NA	NA	NA	NA
AUM18233.1\|3890535_3891429_-	hypothetical protein	E5DV53	Deep-sea_thermophilic_phage	1.3e-46	38.1
AUM18234.1\|3891469_3892231_-	hypothetical protein	NA	NA	NA	NA
AUM18235.1\|3892323_3893436_-\|capsid	minor capsid protein	A0A159B6H5	Gordonia_phage	1.6e-52	38.8
AUM18236.1\|3893643_3895266_-	hypothetical protein	A0A162E1F1	Gordonia_phage	4.1e-86	37.3
AUM18237.1\|3895238_3896582_-\|terminase	PBSX family phage terminase large subunit	G9FH82	Rhodococcus_phage	1.7e-82	40.2
AUM18238.1\|3896521_3896947_-	hypothetical protein	A0A0R8V9Z3	Thermobifida_phage	5.4e-06	35.2
AUM18239.1\|3898655_3899246_-	hypothetical protein	NA	NA	NA	NA
AUM18240.1\|3899242_3899434_-	hypothetical protein	NA	NA	NA	NA
AUM19942.1\|3899430_3899820_-	hypothetical protein	A0A088FRG2	Mycobacterium_phage	8.2e-25	67.4
AUM18241.1\|3899930_3900299_-	hypothetical protein	NA	NA	NA	NA
AUM18242.1\|3900295_3900820_-	hypothetical protein	A0A097EVM2	Mycobacterium_phage	7.6e-34	47.3
AUM18243.1\|3900816_3901128_-	hypothetical protein	NA	NA	NA	NA
AUM18244.1\|3901124_3902075_-	hypothetical protein	A0A2D1GBB0	Mycobacterium_phage	4.3e-27	54.4
AUM18245.1\|3902111_3902498_-	hypothetical protein	A0A0U3TFK9	Gordonia_phage	6.2e-25	47.4
AUM19943.1\|3902726_3902951_-	hypothetical protein	Q857F5	Mycobacterium_phage	4.7e-09	54.4
AUM18246.1\|3902992_3903199_-	hypothetical protein	NA	NA	NA	NA
AUM18247.1\|3903846_3904314_-	hypothetical protein	NA	NA	NA	NA
AUM18248.1\|3904344_3904587_-	hypothetical protein	A0A1B3B0Z3	Gordonia_phage	4.6e-10	50.8

DBSCAN-SWA_7

4975780 : 5035483

Tupanvirus(11.11%)

transposase,tRNA,integrase

attL 4981069:4981087|attR 5046915:5046933

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM19175.1\|4975780_4977352_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
AUM19176.1\|4977542_4978004_-	DUF523 domain-containing protein	NA	NA	NA	NA
AUM19177.1\|4978190_4979060_-	oxidoreductase	NA	NA	NA	NA
AUM19178.1\|4979167_4979461_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AUM19179.1\|4979483_4980041_-	ArsR family transcriptional regulator	NA	NA	NA	NA
AUM20015.1\|4980107_4980464_+	hypothetical protein	NA	NA	NA	NA
AUM20016.1\|4980769_4981114_-	hypothetical protein	NA	NA	NA	NA
4981069:4981087	attL	NA	NA	NA	NA
AUM19180.1\|4981296_4981896_-	histidine phosphatase family protein	NA	NA	NA	NA
AUM19181.1\|4981965_4985265_-\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	9.6e-66	35.6
AUM19182.1\|4985413_4986094_-	DNA-binding response regulator	NA	NA	NA	NA
AUM19183.1\|4986090_4988625_-	histidine kinase	NA	NA	NA	NA
AUM19184.1\|4988632_4989292_-	potassium-transporting ATPase subunit C	NA	NA	NA	NA
AUM19185.1\|4989297_4991388_-	K(+)-transporting ATPase subunit B	M1HBF8	Paramecium_bursaria_Chlorella_virus	1.9e-27	25.5
AUM19186.1\|4991384_4993085_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
AUM19187.1\|4993092_4993191_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA
AUM19188.1\|4993534_4994833_+	DUF2254 domain-containing protein	NA	NA	NA	NA
AUM19189.1\|4994902_4995256_-	ribosomal subunit interface protein	NA	NA	NA	NA
AUM19190.1\|4995383_4997456_-	MMPL family transporter	NA	NA	NA	NA
AUM19191.1\|4997530_4997950_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AUM19192.1\|4997987_4998731_-	anti-sigma factor	NA	NA	NA	NA
AUM19193.1\|4998720_4999296_-	RNA polymerase subunit sigma	NA	NA	NA	NA
AUM19194.1\|4999464_5000094_-	alpha/beta hydrolase	NA	NA	NA	NA
AUM19195.1\|5000241_5000919_+	cell surface protein	NA	NA	NA	NA
AUM19196.1\|5000942_5001524_+	lipocalin	A0A1E1EXN3	Acanthamoeba_castellanii_mimivirus	2.2e-10	31.0
AUM20017.1\|5001751_5003611_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.8e-21	25.8
AUM19197.1\|5003668_5005210_-	DUF2867 domain-containing protein	NA	NA	NA	NA
AUM19198.1\|5005206_5006571_-	TIGR01777 family protein	NA	NA	NA	NA
AUM19199.1\|5006809_5008174_-	deoxyribodipyrimidine photo-lyase	A0A2H4UV63	Bodo_saltans_virus	1.7e-56	29.2
AUM19200.1\|5008244_5008469_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
AUM19201.1\|5008533_5008740_-	hypothetical protein	NA	NA	NA	NA
AUM19202.1\|5008871_5009291_-	hypothetical protein	NA	NA	NA	NA
AUM19203.1\|5009388_5009913_-	hypothetical protein	NA	NA	NA	NA
AUM19204.1\|5009925_5010420_-	S-adenosylmethionine--2-demethylmenaquinone methyltransferase	NA	NA	NA	NA
AUM19205.1\|5010566_5011319_+	FadR family transcriptional regulator	NA	NA	NA	NA
AUM19206.1\|5011426_5011804_-	hypothetical protein	NA	NA	NA	NA
AUM19207.1\|5011823_5013662_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	6.2e-38	22.2
AUM19208.1\|5014224_5014980_+\|transposase	TnsA-like heteromeric transposase endonuclease subunit	NA	NA	NA	NA
AUM19209.1\|5014969_5016217_+	hypothetical protein	NA	NA	NA	NA
AUM19210.1\|5016244_5018308_-	hypothetical protein	NA	NA	NA	NA
AUM19211.1\|5018322_5018556_-	hypothetical protein	NA	NA	NA	NA
AUM19212.1\|5018719_5019196_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AUM19213.1\|5019370_5019655_-	hypothetical protein	NA	NA	NA	NA
AUM19214.1\|5019687_5020581_+	hypothetical protein	NA	NA	NA	NA
AUM19215.1\|5020571_5021600_+	ATP/GTP-binding protein	NA	NA	NA	NA
AUM19216.1\|5021596_5022487_+	hypothetical protein	NA	NA	NA	NA
AUM19217.1\|5022770_5023937_+\|integrase	integrase	NA	NA	NA	NA
AUM19218.1\|5023938_5024955_+	hypothetical protein	NA	NA	NA	NA
AUM19219.1\|5025100_5025562_+	cytochrome P450	V5UQK0	Mycobacterium_phage	1.8e-26	43.9
AUM19220.1\|5025715_5027143_-	hypothetical protein	NA	NA	NA	NA
AUM19221.1\|5028138_5029363_+\|transposase	IS3 family transposase	A0A160DCU2	Gordonia_phage	2.4e-86	54.7
AUM19222.1\|5029409_5030813_+\|transposase	transposase	NA	NA	NA	NA
AUM19223.1\|5030930_5032697_+	cytochrome c oxidase subunit I	NA	NA	NA	NA
AUM19224.1\|5032726_5033260_+	hypothetical protein	NA	NA	NA	NA
AUM19225.1\|5033308_5033929_+	hypothetical protein	NA	NA	NA	NA
AUM19226.1\|5034238_5035483_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.0e-81	44.7
5046915:5046933	attR	NA	NA	NA	NA

DBSCAN-SWA_8

5085457 : 5143213

Enterobacteria_phage(27.27%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUM19261.1\|5085457_5086843_+\|transposase	transposase	NA	NA	NA	NA
AUM19262.1\|5086842_5087652_+	ATP-binding protein	NA	NA	NA	NA
AUM19263.1\|5087794_5088889_+	recombinase family protein	E5FFF9	Burkholderia_phage	5.7e-15	34.0
AUM19264.1\|5089097_5089571_+	ATP-binding protein	NA	NA	NA	NA
AUM19265.1\|5089978_5090944_-	cation-transporting P-type ATPase	E4ZFI9	Streptococcus_phage	2.5e-59	44.5
AUM19266.1\|5091325_5092201_+	M23 family peptidase	G9FHQ8	Rhodococcus_virus	5.0e-22	49.2
AUM20025.1\|5092448_5093141_+	DUF3105 domain-containing protein	NA	NA	NA	NA
AUM19267.1\|5093137_5093872_+	DUF305 domain-containing protein	NA	NA	NA	NA
AUM20026.1\|5093980_5094220_+	DUF4229 domain-containing protein	NA	NA	NA	NA
AUM19268.1\|5094241_5095480_-	divalent metal cation transporter	NA	NA	NA	NA
AUM20027.1\|5095570_5096494_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA
AUM19269.1\|5096539_5097100_-	copper resistance protein CopC	NA	NA	NA	NA
AUM19270.1\|5097285_5097945_+	disulfide bond formation protein DsbA	NA	NA	NA	NA
AUM20028.1\|5097986_5098589_+	Vitamin K epoxide reductase	NA	NA	NA	NA
AUM19271.1\|5098658_5099279_-	hypothetical protein	NA	NA	NA	NA
AUM19272.1\|5099370_5099904_-	hypothetical protein	NA	NA	NA	NA
AUM19273.1\|5099932_5101699_-	cytochrome c oxidase subunit I	NA	NA	NA	NA
AUM19274.1\|5101810_5102758_-	peptidase M48	NA	NA	NA	NA
AUM19275.1\|5102754_5103117_-	penicillinase repressor	NA	NA	NA	NA
AUM19276.1\|5103154_5104051_-	M23 family peptidase	G3MBX9	Mycobacterium_phage	1.0e-22	50.0
AUM19277.1\|5104188_5106180_-	copper resistance protein CopD	NA	NA	NA	NA
AUM19278.1\|5106391_5107315_+	cation transporter	NA	NA	NA	NA
AUM20029.1\|5107982_5109212_-	hypothetical protein	NA	NA	NA	NA
AUM19279.1\|5109493_5111191_+	copper oxidase	NA	NA	NA	NA
AUM19280.1\|5111943_5112141_-	hypothetical protein	NA	NA	NA	NA
AUM19281.1\|5112265_5112448_-	hypothetical protein	NA	NA	NA	NA
AUM19282.1\|5112584_5112875_+	hypothetical protein	NA	NA	NA	NA
AUM19283.1\|5113148_5113901_+\|protease	CAAX protease	NA	NA	NA	NA
AUM19284.1\|5114498_5115746_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	4.8e-111	51.9
AUM19285.1\|5115788_5117105_+	transcriptional regulator	NA	NA	NA	NA
AUM19286.1\|5117101_5117947_+	AAA family ATPase	U5N3V8	Enterobacteria_phage	1.6e-41	39.6
AUM19287.1\|5118667_5119291_-	DNA invertase	A0A0A7NPV4	Enterobacteria_phage	1.4e-47	55.9
AUM19288.1\|5119356_5120166_-	ATP-binding protein	NA	NA	NA	NA
AUM19289.1\|5120165_5121551_-\|transposase	transposase	NA	NA	NA	NA
AUM20030.1\|5121552_5122155_-	recombinase family protein	A0A219YB42	Aeromonas_phage	2.1e-35	47.3
AUM19290.1\|5122352_5122712_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AUM19291.1\|5122708_5123305_+	cadmium transporter	NA	NA	NA	NA
AUM19292.1\|5123537_5124905_-	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA
AUM19293.1\|5124983_5125976_-	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA
AUM19294.1\|5125972_5126518_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
AUM19295.1\|5126514_5126841_-	hypothetical protein	NA	NA	NA	NA
AUM20031.1\|5126863_5127247_-	ArsR family transcriptional regulator	NA	NA	NA	NA
AUM19296.1\|5127368_5128805_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	5.5e-50	30.3
AUM19297.1\|5128826_5129249_+	MerR family transcriptional regulator	NA	NA	NA	NA
AUM19298.1\|5129319_5129961_+	alkylmercury lyase	NA	NA	NA	NA
AUM19299.1\|5130025_5130541_+	DUF1440 domain-containing protein	NA	NA	NA	NA
AUM19300.1\|5130568_5133709_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	1.8e-186	38.6
AUM19301.1\|5133861_5134794_+	cation-transporting P-type ATPase	A0A218MNH6	uncultured_virus	1.0e-20	30.1
AUM19302.1\|5135185_5135512_-	hypothetical protein	NA	NA	NA	NA
AUM19303.1\|5135663_5136623_-	c-type cytochrome biogenesis protein CcsB	NA	NA	NA	NA
AUM20032.1\|5136627_5138148_-	cytochrome c biogenesis protein ResB	NA	NA	NA	NA
AUM19304.1\|5138255_5139062_-	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA
AUM19305.1\|5139058_5139634_-	protein disulfide reductase	NA	NA	NA	NA
AUM19306.1\|5139672_5140302_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
AUM20033.1\|5140553_5141192_+	TVP38/TMEM64 family protein	NA	NA	NA	NA
AUM19307.1\|5141697_5141889_-	hypothetical protein	NA	NA	NA	NA
AUM19308.1\|5141975_5143213_-\|transposase	IS3 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP024892

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

2. CP024891

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP024890

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection