CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP019121	Vibrio vulnificus strain FORC_054 chromosome 1, complete sequence	0 crisprs	WYL,DinG,csa3,RT,DEDDh,PD-DExK,cas3,csx1	3
CP019123	Vibrio vulnificus strain FORC_054 plasmid pFORC54, complete sequence	0 crisprs	NA	0
CP019122	Vibrio vulnificus strain FORC_054 chromosome 2, complete sequence	0 crisprs	RT,WYL,cas3,csa3,DEDDh	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

621162 : 628216

Faustovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL94710.1\|621162_622377_+	Cysteine desulfurase, IscS subfamily	A0A1X7C038	Faustovirus	2.2e-31	32.1
AUL94711.1\|622420_622804_+	Iron-sulfur cluster assembly scaffold protein IscU	A0A218MKD1	uncultured_virus	2.0e-52	77.4
AUL94712.1\|622876_623200_+	Iron binding protein IscA for iron-sulfur cluster assembly	A0A2H4N7N5	Lake_Baikal_phage	1.8e-25	52.3
AUL94713.1\|623260_623776_+	Chaperone protein HscB	NA	NA	NA	NA
AUL94714.1\|623797_625651_+	Chaperone protein HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	7.4e-108	40.0
AUL94715.1\|625662_626001_+	Ferredoxin, 2Fe-2S	NA	NA	NA	NA
AUL94716.1\|626081_626276_+	Fe-S assembly protein IscX	NA	NA	NA	NA
AUL94717.1\|626428_627727_+	Peptidase B	Q6GYZ8	Mycoplasma_phage	5.0e-34	33.1
AUL94718.1\|627790_628216_+	Nucleoside diphosphate kinase	A0A167REB2	Powai_lake_megavirus	6.6e-20	40.6

DBSCAN-SWA_2

719574 : 726333

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL94798.1\|719574_720765_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.2e-65	40.4
AUL94799.1\|720795_722046_+	Gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	2.3e-100	49.0
AUL94800.1\|722246_722696_+	Ribonucleotide reductase transcriptional regulator NrdR	NA	NA	NA	NA
AUL94801.1\|722715_723822_+	Diaminohydroxyphosphoribosylaminopyrimidine deaminase	A0A2I2L4R9	Orpheovirus	8.5e-43	34.2
AUL94802.1\|723823_724480_+	riboflavin synthase subunit alpha	A0A2H4PQS5	Staphylococcus_phage	8.1e-33	35.5
AUL94803.1\|724577_725687_+	3,4-dihydroxy-2-butanone 4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	2.3e-64	40.4
AUL94804.1\|725862_726333_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.2e-32	48.7

DBSCAN-SWA_3

2722595 : 2733744

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL96636.1\|2722595_2725178_-\|tRNA	Alanyl-tRNA synthetase	A0A1V0SK38	Klosneuvirus	1.7e-78	38.1
AUL96637.1\|2725358_2725820_-	Regulatory protein RecX	NA	NA	NA	NA
AUL96638.1\|2725928_2726978_-	RecA protein	A0A2D1GPX2	Mycobacterium_phage	1.8e-111	60.3
AUL96639.1\|2727110_2727614_-	C-terminal domain of CinA type S	B5TK85	Pseudomonas_phage	3.1e-24	43.3
AUL96640.1\|2727697_2730259_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.6e-31	22.4
AUL96641.1\|2730334_2731327_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.5e-35	34.8
AUL96642.1\|2731407_2732304_-	Lipoprotein NlpD	I3PV79	Clostridium_phage	1.5e-13	34.1
AUL96643.1\|2732347_2732974_-	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.6e-38	53.6
AUL96644.1\|2732976_2733744_-	5-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.1e-68	51.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP019122

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

327383 : 402131

Vibrio_phage(50.0%)

head,transposase,portal,integrase,capsid,tail,tRNA,protease

attL 357601:357660|attR 378732:379319

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL97418.1\|327383_327896_+\|tRNA	Valyl-tRNA synthetase	NA	NA	NA	NA
AUL97419.1\|327892_329812_+	diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)	G3MA91	Bacillus_virus	9.3e-29	39.1
AUL97420.1\|329996_331196_+	hypothetical protein	NA	NA	NA	NA
AUL97421.1\|331444_331765_-	hypothetical protein	NA	NA	NA	NA
AUL97422.1\|331867_332758_-	Transcriptional regulator, LysR family	NA	NA	NA	NA
AUL97423.1\|332848_333772_+	Permease of the drug/metabolite transporter (DMT) superfamily	NA	NA	NA	NA
AUL97424.1\|333774_336654_-	Chemotactic transducer-related protein	NA	NA	NA	NA
AUL97425.1\|336846_337287_+	2-oxoglutarate dehydrogenase complex, dehydrogenase component	NA	NA	NA	NA
AUL97426.1\|337369_338119_+	putative histidinol phosphatase and related hydrolases of the PHP family	NA	NA	NA	NA
AUL97427.1\|338204_338606_+	Soluble cytochrome b562	NA	NA	NA	NA
AUL97428.1\|338778_339291_-	Superoxide dismutase (Cu-Zn) precursor	Q9MC02	Salmonella_phage	5.9e-47	53.2
AUL97429.1\|339290_339797_-	AnkB protein	NA	NA	NA	NA
AUL97430.1\|339889_341434_-	Catalase	A0A2K9L0T1	Tupanvirus	5.8e-98	47.8
AUL97431.1\|341490_341691_-	hypothetical protein	NA	NA	NA	NA
AUL97432.1\|341791_342121_+	hypothetical protein	NA	NA	NA	NA
AUL97433.1\|342228_343644_+	hypothetical protein	NA	NA	NA	NA
AUL97434.1\|343826_344210_-	Glyoxylase family protein	NA	NA	NA	NA
AUL97435.1\|344209_345214_-	Transcriptional regulator, LysR family	NA	NA	NA	NA
AUL97436.1\|345427_346669_+	Permease of the major facilitator superfamily	NA	NA	NA	NA
AUL97437.1\|346791_347136_-	ATPase of the AAA+ class	NA	NA	NA	NA
AUL97438.1\|347145_349170_-\|protease	Alkaline serine protease	A0A1B0T6A2	Bacillus_phage	3.1e-30	32.5
AUL97439.1\|349610_350864_+	Thermolabile hemolysin precursor	NA	NA	NA	NA
AUL97440.1\|351137_352331_+	2-amino-3-ketobutyrate coenzyme A ligase	D2TEZ5	Emiliania_huxleyi_virus	6.6e-41	28.5
AUL97441.1\|352438_353470_+	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	1.4e-23	100.0
AUL97442.1\|353657_354215_-	hypothetical protein	NA	NA	NA	NA
AUL97443.1\|354322_354679_-	hypothetical protein	NA	NA	NA	NA
AUL97444.1\|354873_355512_-\|protease	Putative intracellular protease/amidase	NA	NA	NA	NA
AUL97445.1\|355690_356575_-	hypothetical protein	NA	NA	NA	NA
AUL97446.1\|356589_357600_-\|integrase	integrase	A0A1P8CWQ3	Bacillus_phage	1.9e-09	27.7
357601:357660	attL	NA	NA	NA	NA
AUL97447.1\|357623_358124_-\|transposase	transposase	NA	NA	NA	NA
AUL97448.1\|358408_359278_-	hypothetical protein	NA	NA	NA	NA
AUL97449.1\|359445_360204_-	Queuosine Biosynthesis QueC ATPase	A0A0E3GMI2	Enterobacteria_phage	5.7e-14	27.3
AUL97450.1\|360389_360680_-	hypothetical protein	NA	NA	NA	NA
AUL97451.1\|360957_361551_-	Phage Rha protein	A0A1C9IHV9	Salmonella_phage	1.7e-26	59.8
AUL97452.1\|361632_361851_-	hypothetical protein	NA	NA	NA	NA
AUL97453.1\|361817_363041_-	Integrase	R9TMP3	Vibrio_phage	7.1e-200	82.0
AUL97454.1\|363019_363205_-	transcriptional regulator, putative	NA	NA	NA	NA
AUL97455.1\|363279_363543_-	hypothetical protein	R9TNM3	Vibrio_phage	1.0e-18	59.8
AUL97456.1\|363552_363765_-	hypothetical protein	A0A1V0E8D5	Vibrio_phage	4.8e-11	44.8
AUL97457.1\|363813_364638_-	CPS-53 (KpLE1) prophage	R9TRN9	Vibrio_phage	1.8e-122	79.0
AUL97458.1\|364669_365065_-	hypothetical protein	R9TMP0	Vibrio_phage	2.7e-60	88.5
AUL97459.1\|365204_366056_-	DNA-methyltransferase	A0A0E3FXM9	Synechococcus_phage	6.8e-16	28.9
AUL97460.1\|366127_367609_-	hypothetical protein	Q7Y4B3	Escherichia_virus	1.7e-09	34.2
AUL97461.1\|367630_368482_-	transcriptional regulator	R9TNM0	Vibrio_phage	1.8e-85	61.4
AUL97462.1\|368447_368684_+	XRE family transcriptional regulator	A0A1V0E8C7	Vibrio_phage	2.9e-09	44.8
AUL97463.1\|368703_369156_+	hypothetical protein	R9TRN6	Vibrio_phage	3.3e-41	63.7
AUL97464.1\|369152_369404_+	hypothetical protein	R9TMN6	Vibrio_phage	9.3e-30	77.1
AUL97465.1\|369564_369762_+	hypothetical protein	A0A0K1LJE4	Vibrio_phage	8.3e-10	58.3
AUL97466.1\|369826_370633_+	transcriptional regulator	R9TPU9	Vibrio_phage	8.5e-93	71.4
AUL97467.1\|370616_371357_+	Replication protein P	W6MVG8	Pseudomonas_phage	1.1e-25	37.5
AUL97468.1\|371346_371550_+	hypothetical protein	R9TRN3	Vibrio_phage	8.3e-13	53.7
AUL97469.1\|371552_371642_+	DNA-binding protein Roi	NA	NA	NA	NA
AUL97470.1\|371638_371827_+	hypothetical protein	R9TR49	Vibrio_phage	5.0e-20	77.0
AUL97471.1\|371961_372132_+	hypothetical protein	R9TNL4	Vibrio_phage	6.5e-19	78.2
AUL97472.1\|372211_373225_+	hypothetical protein	R9TRM9	Vibrio_phage	2.4e-140	71.4
AUL97473.1\|373509_374718_-	Unknown, probable transporter	NA	NA	NA	NA
AUL97474.1\|374727_376008_-	n-type ATP pyrophosphatase superfamily / TilS and TtcA-like	A0A0U2S5Z2	Escherichia_phage	8.2e-05	27.3
AUL97475.1\|377038_377221_-	hypothetical protein	NA	NA	NA	NA
AUL97476.1\|377720_378731_-\|integrase	integrase	A0A1P8CWQ3	Bacillus_phage	1.9e-09	27.7
AUL97477.1\|378754_379255_-\|transposase	transposase	NA	NA	NA	NA
AUL97478.1\|379614_380115_-	protein of unknown function DUF159	NA	NA	NA	NA
378732:379319	attR	NA	NA	NA	NA
AUL97479.1\|380699_381386_+	hypothetical protein	R9TRM8	Vibrio_phage	7.1e-72	59.0
AUL97480.1\|381515_381704_+	hypothetical protein	A0A1V0E826	Vibrio_phage	5.0e-12	54.1
AUL97481.1\|381681_382170_+	lysozyme	A0A1U9GSH3	Vibrio_phage	1.3e-56	68.4
AUL97482.1\|382148_382652_+	Phage outer membrane lytic protein Rz	A0A1V0E843	Vibrio_phage	5.4e-21	41.4
AUL97483.1\|382873_383326_+	hypothetical protein	NA	NA	NA	NA
AUL97484.1\|383492_385193_+	DNA packaging protein	A0A1I9KF19	Aeromonas_phage	7.0e-113	40.0
AUL97485.1\|385192_385402_+\|head,tail	putative head-tail joining protein of prophage	NA	NA	NA	NA
AUL97486.1\|385401_386961_+\|portal	Phage portal protein	A0A0K2FJC0	Enterobacteria_phage	4.6e-159	57.1
AUL97487.1\|386953_388327_+\|tail	Head-tail preconnector protein GP5	A0A2I6TC87	Escherichia_phage	1.5e-84	43.8
AUL97488.1\|388337_388676_+	Bacterial surface proteins containing Ig-like domains	NA	NA	NA	NA
AUL97489.1\|388713_389754_+\|capsid	Phage major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-69	43.4
AUL97490.1\|389820_390327_+	hypothetical protein	NA	NA	NA	NA
AUL97491.1\|390329_390620_+	hypothetical protein	NA	NA	NA	NA
AUL97492.1\|390616_391243_+\|tail	minor tail protein	K7PKQ5	Enterobacteria_phage	1.3e-27	38.4
AUL97493.1\|391232_391673_+\|tail	Phage minor tail protein	S5MW30	Escherichia_phage	2.8e-13	37.6
AUL97494.1\|391675_392167_+\|tail	putative phage tail component	A5LH35	Enterobacteria_phage	3.4e-36	50.0
AUL97495.1\|392176_392635_+	hypothetical protein	NA	NA	NA	NA
AUL97496.1\|392700_392979_+	hypothetical protein	NA	NA	NA	NA
AUL97497.1\|392959_395263_+	hypothetical protein	A0A1Q1PW43	Pseudoalteromonas_phage	1.1e-23	32.4
AUL97498.1\|395262_395865_+	hypothetical protein	NA	NA	NA	NA
AUL97499.1\|395861_396413_+	hypothetical protein	NA	NA	NA	NA
AUL97500.1\|396416_402131_+\|tail	Phage tail assembly	H6WXP7	Vibrio_phage	9.5e-37	43.4

DBSCAN-SWA_2

807857 : 820614

Staphylococcus_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL97857.1\|807857_809618_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.1e-63	30.6
AUL97858.1\|809908_810814_+	exonuclease	NA	NA	NA	NA
AUL97859.1\|810760_811657_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	4.6e-39	35.1
AUL97860.1\|811631_812246_-	hypothetical protein	NA	NA	NA	NA
AUL97861.1\|812293_812968_-	ATP-dependent DNA helicase pcrA	A0A1V0SG90	Hokovirus	1.4e-08	26.4
AUL97862.1\|812967_813708_-	putative exonuclease	NA	NA	NA	NA
AUL97863.1\|813816_814689_-	Mobile element protein	Q716C2	Shigella_phage	8.0e-113	66.3
AUL97864.1\|814685_814994_-	Mobile element protein	Q716C1	Shigella_phage	7.1e-32	76.3
AUL97865.1\|815562_816510_+	Integrase, catalytic region	W5R8L2	Staphylococcus_phage	4.7e-42	35.3
AUL97866.1\|818008_818215_-	hypothetical protein	NA	NA	NA	NA
AUL97867.1\|818268_819216_-	Integrase, catalytic region	W5R8L2	Staphylococcus_phage	8.1e-42	35.3
AUL97868.1\|819306_820614_-	hypothetical protein	G3MAX6	Bacillus_virus	5.5e-33	42.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP019121

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP019122

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection