CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP018321	Alteromonas macleodii strain Te101 chromosome, complete genome	1 crisprs	DinG,DEDDh,cas3,csa3,WYL,RT	0	0	3	0
CP018322	Alteromonas macleodii strain Te101 plasmid pTE101a, complete sequence	1 crisprs	NA	0	2	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP018321_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP018321_1

39923-39997

Orphan

Consensus_repeat	Method
AAAAATGGGGTCAGAGTACATTAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP018321_1

>merge|CP018321|1|39923-39997|CRISPRCasFinder
AAAAATGGGGTCAGAGTACATTAATCCCCAATCTTCCCCCTTTAAAACATCAAAAAGGGGTCAGAGTACATTAAT

>CP018321|1|1|39923-39997|CRISPRCasFinder
AAAAATGGGGTCAGAGTACATTAAT	CCCCAATCTTCCCCCTTTAAAACAT
CAAAAAGGGGTCAGAGTACATTAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP018321.1\|AUI80806.1\|33286_34327_+\|CDP-glycerol--poly(glycerophosphate)-glycerophosphotransferase	unknown	unknown	gnl\|CDD\|224799
CP018321.1\|AUI80813.1\|48269_48779_-\|hypothetical-protein	unknown	unknown	unknown
CP018321.1\|AUI80804.1\|31692_32532_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
CP018321.1\|AUI80803.1\|31262_31694_-\|hemoglobin-like-oxygen-binding-protein	unknown	unknown	gnl\|CDD\|381282
CP018321.1\|AUI80810.1\|42656_45746_-\|error-prone-DNA-polymerase	unknown	unknown	gnl\|CDD\|235553
CP018321.1\|AUI80801.1\|29290_30223_+\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|235413
CP018321.1\|AUI80809.1\|41723_42515_-\|hypothetical-protein	unknown	unknown	unknown
CP018321.1\|AUI80799.1\|28100_28643_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235840
CP018321.1\|AUI80812.1\|47269_48022_-\|recombinase-RecA	unknown	unknown	gnl\|CDD\|380271
CP018321.1\|AUI80815.1\|50571_50907_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370154
CP018321.1\|AUI80811.1\|45782_47270_-\|DNA-repair-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|176458
CP018321.1\|AUI80805.1\|32528_33071_-\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|100051
CP018321.1\|AUI80807.1\|40245_40776_-\|acyloxyacyl-hydrolase	unknown	unknown	gnl\|CDD\|378181
CP018321.1\|AUI80816.1\|51096_52734_+\|peptidase-M28	unknown	unknown	gnl\|CDD\|349910
CP018321.1\|AUI80797.1\|26427_27537_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|236747
CP018321.1\|AUI80808.1\|40912_41743_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366132
CP018321.1\|AUI80802.1\|30457_31138_+\|outer-membrane-protein-OmpW	unknown	unknown	gnl\|CDD\|182867
CP018321.1\|AUI80800.1\|28688_29294_+\|L-threonylcarbamoyladenylate-synthase-type-1-TsaC	unknown	unknown	gnl\|CDD\|182603
CP018321.1\|AUI80814.1\|48781_50533_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377577
CP018321.1\|AUI80798.1\|27538_28015_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235125

Protein	Function_ID	Function_description	E-value
CP018321.1\|AUI80806.1\|33286_34327_+\|CDP-glycerol--poly(glycerophosphate)-glycerophosphotransferase	gnl\|CDD\|224799	COG1887, TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane].	1.38993e-20
CP018321.1\|AUI80816.1\|51096_52734_+\|peptidase-M28	gnl\|CDD\|349910	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.	9.96842e-88
CP018321.1\|AUI80804.1\|31692_32532_+\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	6.08521e-103
CP018321.1\|AUI80803.1\|31262_31694_-\|hemoglobin-like-oxygen-binding-protein	gnl\|CDD\|381282	cd14773, TrHb2_PhHbO-like_O, Truncated hemoglobins, group 2 (O); Pseudoalteromonas haloplanktis PhHbO like. The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or the T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. TrHbs are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P). TrHb2's belonging to this group include Pseudoalteromonas haloplanktis PhHbO (encoded by the PSHAa0030 gene) which appears to be involved in oxidative and nitrosative stress resistance.	1.97815e-59
CP018321.1\|AUI80810.1\|42656_45746_-\|error-prone-DNA-polymerase	gnl\|CDD\|235553	PRK05672, dnaE2, error-prone DNA polymerase; Validated.	0
CP018321.1\|AUI80801.1\|29290_30223_+\|coproporphyrinogen-III-oxidase	gnl\|CDD\|235413	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase.	0
CP018321.1\|AUI80799.1\|28100_28643_+\|hypothetical-protein	gnl\|CDD\|235840	PRK06599, PRK06599, DNA topoisomerase I; Validated.	3.54972e-30
CP018321.1\|AUI80812.1\|47269_48022_-\|recombinase-RecA	gnl\|CDD\|380271	NF033429, ImuA_translesion, translesion DNA synthesis-associated protein ImuA. A three-gene cassette encoding ImuA, ImuB, and ImuC (""inducible mutagenesis"") is induced by DNA damage, is capable of DNA synthesis across DNA damage lesions, and consequently is associated with mutagenesis. This family, ImuA (previously misnamed SulA in Pseudomonas putida) shows some homology to SulA itself and to RecA. ImuB resembles Y-family polymerases but may be catalytically inactive. ImuC is a C-family polymerase, and catalytically active.	3.87517e-47
CP018321.1\|AUI80815.1\|50571_50907_-\|hypothetical-protein	gnl\|CDD\|370154	pfam08850, DUF1820, Domain of unknown function (DUF1820). This family includes small functionally uncharacterized proteins around 100 amino acids in length.	4.20116e-50
CP018321.1\|AUI80811.1\|45782_47270_-\|DNA-repair-nucleotidyltransferase	gnl\|CDD\|176458	cd03468, PolY_like, DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.	9.51719e-38
CP018321.1\|AUI80805.1\|32528_33071_-\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	9.80964e-74
CP018321.1\|AUI80807.1\|40245_40776_-\|acyloxyacyl-hydrolase	gnl\|CDD\|378181	pfam09411, PagL, Lipid A 3-O-deacylase (PagL). PagL is an outer membrane protein with lipid A 3-O-deacylase activity. It forms an 8 stranded beta barrel structure.	7.56863e-23
CP018321.1\|AUI80797.1\|26427_27537_+\|DNA-protecting-protein-DprA	gnl\|CDD\|236747	PRK10736, PRK10736, DNA-protecting protein DprA.	3.14582e-113
CP018321.1\|AUI80808.1\|40912_41743_-\|hypothetical-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	3.05233e-07
CP018321.1\|AUI80802.1\|30457_31138_+\|outer-membrane-protein-OmpW	gnl\|CDD\|182867	PRK10959, PRK10959, outer membrane protein W; Provisional.	2.78295e-91
CP018321.1\|AUI80800.1\|28688_29294_+\|L-threonylcarbamoyladenylate-synthase-type-1-TsaC	gnl\|CDD\|182603	PRK10634, PRK10634, L-threonylcarbamoyladenylate synthase type 1 TsaC.	2.67533e-86
CP018321.1\|AUI80814.1\|48781_50533_-\|hypothetical-protein	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	0
CP018321.1\|AUI80798.1\|27538_28015_+\|hypothetical-protein	gnl\|CDD\|235125	PRK03430, PRK03430, hypothetical protein; Validated.	3.05084e-84

>CP018321.1|AUI80806.1|33286_34327_+|CDP-glycerol--poly(glycerophosphate)-glycerophosphotransferase
MPKRYVFFTALSYAYPIYRPLQEAIRARGDEVAWFLEGECPDLLKPDEIRLHTINDVIEYNPLAIFACGNIIYHFLPGIKVSVFHGYPIGKRGEKSSATDDHFSIRGWFDMYCTQGPSSTEYFKQLEAKHQFFKVYQTGWAKVDDYFSSYKKENDVPTILYATTFSKGITSAPILVDTISRLVKEKKWNWRLTFHPKLNDQALLDRYRALADEYSNVTFVDNVRLEDFQQSDVMLCDSSSIILEFMMMNKPVVTYRNTNPGQHLLNVTEVSEVENAIETALTRPASLMKEVNDFAHYHEAYRDGRNCERILDAVDDFNSNYKGKIKAKPLNLWRKFRLRNKLKYWK
>CP018321.1|AUI80805.1|32528_33071_-|gamma-carbonic-anhydrase-family-protein
MHKSIDSFKGVSPTLGKNVYVDGSARIVGDVVLEDDASIWPLVAARGDVNKIRIGARSNIQDGSVLHVTRKSEKNPNGFPLIIGEDVTVGHKCMLHGCQLGNRILVGMGAIVMDGVVVEDDVFIGAGTLVPPNKRLESGFLYVGNPMQKKRPLNDAEMAFLKQSAVNYVVLKDEYLEEAN
>CP018321.1|AUI80804.1|31692_32532_+|shikimate-dehydrogenase
MKKFAVFGNPIAQSLSPTIHQMFAEQVGEKISYEKILAPVDGFVDAANAFLAQEGAVGCNVTMPFKLDAFNLAKVDDQAAKDAQAVNTLMNGDSGEVWGYNTDGVGLVNDLLNSGVEIKGKRVLLIGAGGAARGVISPLLKAGAASLTITNRTKAKAEEVASAASNAKVQVAALEDIADVAPHIIINSTAASLSNELPCRLNDGVLQNCEVVYDMVYKNSPTRFMREAAELGVKTQIDGLGMLVEQAAEAFYIWTQKRPDTSDIVKRVRAIVEQGEKRN
>CP018321.1|AUI80803.1|31262_31694_-|hemoglobin-like-oxygen-binding-protein
MGIRDLFNIKKKSDNRASQSTPYERIGGEEKVRELANTFYDIMETDPLANELLAIHPQPLDRIRHVFFLYLSLWLGGPDDYQQQYGHPRLRARHLPYTVTPELKAQWMYCMRKAMFKTVEDIALAQQLIDALDQLANHMVNTK
>CP018321.1|AUI80802.1|30457_31138_+|outer-membrane-protein-OmpW
MRKHFLSASALCLTLAALSPLASAHQQGDWIVRGGLTTVAPDESTSNIVAGGTDLGVALNIDNDTQLGLNVAYFITDNINIELLAATPFKHDVNFSVADPLGTGNQLGEVTHLPPTLTANYYFNDASSAFQPYIGAGINYTFIFDEEFTGANETAGLSDLSLDNSFGLSAQVGMDYQIDTKWHVNASVRFIDIDTEATFKVGDAAGKVSDIEIDPWVYTLSVGYTF
>CP018321.1|AUI80801.1|29290_30223_+|coproporphyrinogen-III-oxidase
MTSAELLDGKNAAEVIEQVKSYLLGLQDTICQTLELADGKGQFVEDSWQREEGGGGRSRVLKNGAVIEQGGVNFSHVFGSQMPASATANRPELAGRNFQAMGVSLVIHPHNPYIPTSHANVRFFIAEKEGEAPIWWFGGGFDLTPFYPFKDDVLHWHDTAKKLCKPFGNDVYPKYKKWCDDYFYLKHRNETRGVGGLFFDDLNEWGFEQSFAFMQAVGNGFIDAYVPIVERRKQTDFGERERDFQLYRRGRYVEFNLVFDRGTLFGLQTGGRTESILMSMPPLARWEYCYTPAPGSAEAKLTDWLKPTDW
>CP018321.1|AUI80800.1|28688_29294_+|L-threonylcarbamoyladenylate-synthase-type-1-TsaC
MSDIQNGNVNTFTPVEANSPEVDPVVAAFQAGSLIVYPTEAVMGIGCDPDNEAAVNALLEIKQRPVEKGVILIAANYSQLLPYVNDNAIRPDRRTDIFSSWPGPNTWLLPKSSSAPVWLTGKHSKIAVRVTNHPVVVELCNKLGKPLVSTSANLTGQPPAITTEEAKAVFADSVFYVEGEVGGATKPSTIRDGDTAEVIRA
>CP018321.1|AUI80799.1|28100_28643_+|hypothetical-protein
MSKIDHSLFSAHEHALDDNFGDCPECGKPLHIKNSKSGPFIGCTGYPECSFSKPLHDKQTTILKTLDGVACPECASDLAIKKGRFGMFIGCTNFPSCHHIEPIKEKEDTLVDCPKCKKGHLISRTNKYGKQFFACNHYPQCRYVLNFTPVNESCPDCGWGVLIDKKGQLQCPQPSCGFKK
>CP018321.1|AUI80798.1|27538_28015_+|hypothetical-protein
MFDILMYLFENFIHSETEIRVDQDELTEELVRAGFHHDEIYKALAWLEKLAALQETDIKPYFCKGISTSLSRIYTHEEQMRLDVECRGFLMFLEQVNVLDASTREMVIDRVMEIDSNEFCLEDLKWVVLMVLFNVPGKEKAYAQMEDLLFEEPDGVLH
>CP018321.1|AUI80797.1|26427_27537_+|DNA-protecting-protein-DprA
MAPQSSQLDSETLAWIALASAQRVSPKLWLQALEKYQLSTVDLGSNTSSLPNEVKQLINNISPPLIDAAINWLQASDNRHIVPLSSPHYPELLKQLDSPPLALFATGNKALFQKPQIAIVGSRRASLQGKRTATDIAYGLSSSGVVVTSGLAMGIDSAAHQGALSGSTGTIAVMGTGPEKVYPAKNSKLYEAINNDGGVTVTEFFPGQGPKPWHFPRRNRIIAALSLGTLVVEAKIKSGTLITANLAADMGREVFAVPGNIANAYAEGCHWLIQQGAKLVTNISDILDEVGVQPEQLGLNVDEQNEKSTANSLATDKLLASVDYDITAIDVIAQRNALSVSQAMASLLEYELRGLVAAVPGGYVKLRGK
>CP018321.1|AUI80807.1|40245_40776_-|acyloxyacyl-hydrolase
MKQASLLLFSFFIIFTASGVQAKQTVSVDYMHGFDDIDGMRFAYRPLEQTLTTDWFGDLKLYWEVSAVVWEYGENDTHSTSYGASLTPVFMKQVSTLYDKYPVYIEAGIGASYIGNQKVAGKDIGSNYQFEDRLGVFVEIDKKQHVALRYMHFSNGGFNNDNPGLDFLNLSYAYHF
>CP018321.1|AUI80808.1|40912_41743_-|hypothetical-protein
MKRFGNSIRRFVQMAVLPVTCTLSSPFVSADTYIVGAQNIEYYPYYNFSSDHEKGLGWAILEAFSKQSGHRFVYLSMPVKRLQIELKKGNVDFVFPDNARWYDQITHSLNKVYSEPLAETFAVTLVKTDNLGKGITHITKLATPDGFSPVKWEQQIKNGTVKVTGVNSIYDGLNLLQSDNVDALDVEYNAAKNVARRFPQMGPFAADLTLPHNVVSFSLSTLRHPEIIAELNTFILSESESINKIKAKYGIEDTKQLIERLMEEQHVSADTRWTPL
>CP018321.1|AUI80809.1|41723_42515_-|hypothetical-protein
MMRCIGLFIGCLFSLNIYADKYVIGAQNLAYFPHYDFASSTDKGVAWSILEAFSEASGHEFVYLSLPIRRLQLELVKGNVDFVYPDNRGWYNSITTSNDKYFSLPLTSAVTGTIVKRQNAGKGIEKIKNLAMPLGFTPVNWQERIDTQRTQITWVTDIQQGLALLYQERVDGLDLEYFVSQRSAPLSYEQDAFTLDLTLPHNEIPFSLSTLYHQDIISELNKFISSNPELIDSIKTKYGITPFEQLSQKLLIEQGLKIEEVWK
>CP018321.1|AUI80810.1|42656_45746_-|error-prone-DNA-polymerase
MKYSELFCQSNYSFLCGASSPAELVTTASFLGYDALAITDECSVAGVVRAFDEIKHQGLPITLIVGSYFVFDDTLSFVLLCPNKAAYSELCRIITNARRRSEKGEYQLAEWDLRTIRHCKFIWLPSGKVPQDKHWAEWLQKHPSIDAYIGAQRLLDGRDHHRFAHYNHLQSAYPFPVIACTGALMHHADRLPLQHVLHATNVHTSVDKIGREALSNAERSLRTIQKIKKLYPEKWIANTNALAQVFTFSLEELRYHYPAELVPEGYTPTLYLRERVEAGIKVRFPEGIPPDIRQTIEKELTLIAEQEYEYFFLTIYDIVQFAKRQRILYQGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERNEPPDIDVDFEHQRREEVIQYIYQKYGRERTAIAATVICYRFKSAFKDVGKALGFSESQLDFVVKQINRRDSVIPWKSQLAGLGLNPEEPRVQQLITLTEALLGTPRHLSQHVGGFVISAGPLYDLVPVENAAMEERTIIQWDKDDIETLGLLKVDVLALGMLSAIRRAFSLINKQYPVETSIPFITKLGDDKQVFDMICRADTVGVFQIESRAQMSMLPRLKPRRYYDLVVQIAIVRPGPIQGDMVHPYLIRRHGNETISYPSKDVEKVLSRTMGVPIFQEQVIQLAMVAAGFSGGEADQLRRAMASWKKDGRIFEFRDKLIKGMTDKGYDSTFAHNLFEQIKGFAGYGFPESHSASFAVLAYVSCWLKFYFPVEFYVALLNSWPMGFYSPSQLVQDAKRHHIRVEAPCVNQSDVEHSLVVQGQKKHIQLGLKLIKGLSEASSQLIVENRSDKGYINVEQLQQLSLKSNELEALASADALRTISGNRYETRWRIMDTQTRLPLFNTDDFYADKNATPLGAAPTEAENLLEDYASTGLSVNNHPISLLKKQHKLKDISWSNSLKDKTNKSVVKVLGAVTGRQAPGTAAGVTFLTLEDDIGNMNVVVWQATARAQQQTFLKAKLLQVNGIIERSKEGVIHIIAGKLIDRTPWLEKLSLSSRDFH
>CP018321.1|AUI80811.1|45782_47270_-|DNA-repair-nucleotidyltransferase
MMLWAYIYCYQLTLDSHIKAARSKRAHSQLSKHETNNQYSALASNTPVAVYCSKTNKITQCNDIAKKEGIEIGHGLAQAAALCPYVHILPFSEEAEKHMLTQLAHRLYPLASDIVLDNHIHSNSVSGLAVRLDNLTHYYGGHTPLWKTLTQALAEADIRYHFASAWTIEAAKVLALHKFNTYLHTSDDIKKALSACPLSITALSPKVIDSLARVGVSCVQQLLAMPVQELGRRFNNNTIMYLTALRGETFPRVTLFRPLEHFDNFILLPFDIENTQHLTPFVTQQFEHLSHYLRARNLYTSSISVHIHFREAPAMDINIRSALPQSSVKSWLPLFSLKTENLVLPEPATAIALTCQQFEEMDTQNGDFFSDRFNDIAQKQLIGRLNAKLGDDSTFQPRAADSHQFEYMTVTESSVGNCAGNYAYSSDITPTFTFDVPKPLIQATQICFGPVRLHSEWWHDSPTKRDYFIAQTEQCVRLLVFKDEESRWWVQGLFC
>CP018321.1|AUI80812.1|47269_48022_-|recombinase-RecA
MNKSLSVLNNHPHIWRARDQRQSETKFSLGFPRLDKALNGGVTSTGLVRISSLTGMGELSLFKQVICQHRTHKLVVFINPPGLLQSPWLENLGLKAQQVLVVKPSSEQESLWAAEQCLKSTACHCVVLWSNAVNQKEARRLQVAATHNDALCLLYTPPQQQASQLGYPKANMGSDSQANLSNESDSALPITLDIALKGKPHALAVNIRKQRHGWPKDNIVISHRWTPDNHAIKWAMAHNTLSDQALHSVS
>CP018321.1|AUI80813.1|48269_48779_-|hypothetical-protein
MIVAFGVIGLLILFLIYFVLRAQNLQKELALLRHSNKQTNNKVTYAYRNLVLVTDALEKNLTARIESAYKSRLIDQTQYNALHPLMRNFSTIVMACCEKGMSFEESLNKVLLNEEVTLEEIREVVKALPSNVRMVWSKNTADGFIAFCQTVTATVSGTTAKAQKEPPEE
>CP018321.1|AUI80814.1|48781_50533_-|hypothetical-protein
MYRYVLAALLFICSVNSSAKDLNDESLYQLLDDIWQYELSVSPLLASREGDTSLAHVLPDNSPKALKAQNEQWRTFQKALSQYKKEDISTDAYIALLMQQYRLANYVDEYTYRAHLVPINSEYGFHGAMASLPNLSTFKRVEDYQAYISRLNALKPYFDQQIAYMKQALKEGYTQPKVVLKGFENSVASYIVENAEDSGFYSPFTRFPEYFTAEQKSALTEQGKAAITSSVLPAYQMFYDFMVDEYIPNAREDIAANNWPDGVAYYANRAKHYTTTDMTPQEIHDLGLSEVKRIRAQMRQIVDELGFDGDINDFIAFLREDPQFYATSAEDLLKEASFIAKKMDAKLPSLFEYLPRTPYGVAPVPDAIAPKYTTGRYIHPSRDDQPGYYWVNTYALDKRPLYALPALTLHEAVPGHHLQISLAAELEDLPMVRRNTYISAFGEGWGLYSEFLGIEAGIYETPYDNFGRLSYEMWRACRLVVDTGMHTMGWSRQQAVDYMMENTALSEHNVNTEIDRYISWPAQALSYKIGEIKIKGLRKKAEKALGERFDVRKFHRAVLENGSVPLFILEQNINTFIEEQKAQ
>CP018321.1|AUI80815.1|50571_50907_-|hypothetical-protein
MSKDDILYRVQFISNGERYELYVKSLMQGALFGFIEIGDFVWDTHTSVVVDPSHERLKAEFSEVTKTYVPMHNILRIDAVNKKGSAKITKLENKSDKVTAFPSPIYTPTKE
>CP018321.1|AUI80816.1|51096_52734_+|peptidase-M28
MIKKLLIGSAMTAMTFAATAHNHASTDNAFNPDTQRIKSHLFFLADDLLEGRDTGSRGHEIAALYIATEFAKYGLKPAGTDGYMQNVAFRKANLVQESPKFTFTQNGETVDFDYPKEYLASPSLLSTEANVKGEMVFVGYGIVADELSHNDYKDLDVKGKVVVALAGKPSDFPSEEGAHFASGYQKQKYAVDNGAIGMITITTPKNEKVRPYQSRLNYIHTPRMAWLDDSGQPANSFSQLKGGAYMSEGAARKLFEGAEKSLDDVYAQLEADKVPQGFALNGVVDISKTSVHDTITSPNVVGVLEGSDPELKNEYVVFSAHSDHIGFAKTVKKDNINNGAMDNASGTSVMLETARLFSEMEEKPKRSILFVSVTGEEKGLLGADYFARNPTVPVTSMVANVNLDMPILTYEFADVIAFGANHSDLQESVEKAAANANIELSPDPWPEQALFTRSDHYAFVKQGVPSVFMVPGLKSKDPNVDGSKVFGQFLSTHYHKPSDDINQPFNWNAAETFTKVNAQIGWTLANQKNKPKWNDGDFFGNTFSK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

241884 : 295922

Acinetobacter_phage(33.33%)

integrase,transposase,protease,tRNA

attL 276590:276606|attR 302093:302109

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUI80974.1\|241884_243327_+\|protease	metalloprotease TldD	NA	NA	NA	NA
AUI80975.1\|243415_243844_-	hypothetical protein	NA	NA	NA	NA
AUI80976.1\|243905_244463_-	hypothetical protein	NA	NA	NA	NA
AUI80977.1\|244535_245867_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
AUI80978.1\|245863_246718_-	AraC family transcriptional regulator	NA	NA	NA	NA
AUI80979.1\|246822_249942_+	beta-D-galactosidase	L0N6M2	Herpes_simplex_virus	5.9e-299	50.0
AUI80980.1\|250099_250807_-	two-component system response regulator ArcA	NA	NA	NA	NA
AUI80981.1\|250961_252608_-	ATPase	NA	NA	NA	NA
AUI80982.1\|252715_254140_-	starch synthase	NA	NA	NA	NA
AUI80983.1\|254289_255372_-	16S rRNA methyltransferase	NA	NA	NA	NA
AUI80984.1\|255371_256091_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
AUI80985.1\|256182_256887_-	alpha/beta hydrolase	NA	NA	NA	NA
AUI80986.1\|257000_258068_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
AUI80987.1\|258127_258400_+	oxidative damage protection protein	NA	NA	NA	NA
AUI80988.1\|258866_259076_-	DUF3892 domain-containing protein	NA	NA	NA	NA
AUI80989.1\|259242_259905_+	hypothetical protein	NA	NA	NA	NA
AUI84451.1\|259888_260992_+	hypothetical protein	B6SBZ6	Clostridium_virus	1.0e-27	28.2
AUI80990.1\|261434_262550_-	hypothetical protein	NA	NA	NA	NA
AUI80991.1\|262551_263493_-	hypothetical protein	NA	NA	NA	NA
AUI80992.1\|264157_264916_+	hypothetical protein	NA	NA	NA	NA
AUI80993.1\|264937_265687_+	hypothetical protein	NA	NA	NA	NA
AUI80994.1\|265688_265982_-	hypothetical protein	NA	NA	NA	NA
AUI80995.1\|266040_266448_-	hypothetical protein	NA	NA	NA	NA
AUI80996.1\|266725_267193_-	hypothetical protein	NA	NA	NA	NA
AUI80997.1\|267211_269242_-	AAA family ATPase	K9MCS8	Sulfolobus_virus	1.3e-09	30.4
AUI80998.1\|269254_270148_-\|integrase	integrase	NA	NA	NA	NA
AUI80999.1\|270318_271050_-	hypothetical protein	NA	NA	NA	NA
AUI81000.1\|271479_272709_+	hypothetical protein	NA	NA	NA	NA
AUI81001.1\|272756_273572_-	hypothetical protein	NA	NA	NA	NA
AUI84452.1\|273633_274023_-	hypothetical protein	NA	NA	NA	NA
AUI81002.1\|275473_275965_+	metal-binding protein	NA	NA	NA	NA
AUI81003.1\|276056_276410_+	copper resistance protein CopC	NA	NA	NA	NA
AUI81004.1\|276425_277319_+	copper-binding protein	NA	NA	NA	NA
276590:276606	attL	NA	NA	NA	NA
AUI81005.1\|277339_277810_+	DUF4440 domain-containing protein	NA	NA	NA	NA
AUI81006.1\|277837_278071_+	hypothetical protein	NA	NA	NA	NA
AUI84453.1\|278099_278930_-\|transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	8.3e-59	45.1
AUI81007.1\|278977_279274_-	hypothetical protein	NA	NA	NA	NA
AUI84454.1\|279902_280313_+	hypothetical protein	NA	NA	NA	NA
AUI81008.1\|280578_281013_+	MerR family transcriptional regulator	NA	NA	NA	NA
AUI81009.1\|281088_283332_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	9.7e-94	34.4
AUI81010.1\|283343_283697_+	plastocyanin	NA	NA	NA	NA
AUI81011.1\|283705_284044_+	hypothetical protein	NA	NA	NA	NA
AUI81012.1\|284036_284702_+	isoprenylcysteine carboxyl methyltransferase	NA	NA	NA	NA
AUI81013.1\|284685_285096_+	hypothetical protein	NA	NA	NA	NA
AUI81014.1\|285113_285485_+	hypothetical protein	NA	NA	NA	NA
AUI81015.1\|285584_285830_+	hypothetical protein	NA	NA	NA	NA
AUI81016.1\|286242_287568_-	amino acid permease	NA	NA	NA	NA
AUI84455.1\|287725_288463_-	copper resistance protein	NA	NA	NA	NA
AUI81017.1\|288481_290296_-	copper resistance protein CopA	NA	NA	NA	NA
AUI84456.1\|290988_291819_-\|transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	8.3e-59	45.1
AUI81018.1\|291866_292163_-	hypothetical protein	NA	NA	NA	NA
AUI81019.1\|292237_292969_-	glutaredoxin family protein	NA	NA	NA	NA
AUI81020.1\|292961_293492_-	DUF305 domain-containing protein	NA	NA	NA	NA
AUI81021.1\|293613_294009_+	hypothetical protein	NA	NA	NA	NA
AUI81022.1\|294632_295922_-\|integrase	integrase	NA	NA	NA	NA
302093:302109	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1019456 : 1028206

Streptococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUI81584.1\|1019456_1020749_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.4e-134	60.2
AUI81585.1\|1020808_1022440_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.1e-147	50.4
AUI81586.1\|1022596_1025218_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.1e-32	21.9
AUI81587.1\|1025361_1025901_+	damage-inducible protein CinA	B5TK85	Pseudomonas_phage	3.0e-25	45.2
AUI81588.1\|1026021_1027068_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.0e-117	63.5
AUI81589.1\|1027384_1028206_+	ABC transporter	A0A2H4PQG7	Staphylococcus_phage	2.4e-26	33.2

DBSCAN-SWA_3

3989101 : 4000704

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUI83919.1\|3989101_3989971_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.1e-32	37.2
AUI83920.1\|3990005_3990551_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.3e-49	56.5
AUI83921.1\|3990626_3991511_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	6.1e-100	60.3
AUI83922.1\|3991523_3992864_-	phosphoglucosamine mutase	NA	NA	NA	NA
AUI83923.1\|3992930_3994763_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1HVL7	Paramecium_bursaria_Chlorella_virus	5.2e-138	45.3
AUI83924.1\|3994784_3995876_-	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	3.8e-27	30.4
AUI83925.1\|3995872_3997648_-	hypothetical protein	NA	NA	NA	NA
AUI83926.1\|3997677_4000704_-	hypothetical protein	A0A1V0SAH6	Catovirus	3.5e-14	34.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP018322

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP018322_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP018322_1

38364-38608

Orphan

Consensus_repeat	Method
CTCTACTCCCCATGTTACTGGACGTCCGGGAACA	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP018322_1

>merge|CP018322|1|38364-38608|CRISPRCasFinder
CTCTACTCCCCATGTTACTGGACGTCCGGGAACATCGCCAAAAGGTGCGTCCGGGAACACTTTTTCAAAATTTTTGGTTTTTGTGTGTATTGGCTCTACTCCCCACGTTACTGGACGTCCGGGAACACCCTGTTATAGGCATTCAATTCCCAGCGAATTCTACATTTTTGATAGATTCATGACTTAGGTTAGTCTTCTTAATCAGTGAATCGTCTACTCCCCCCGTTACTGGACGTCCGGGAACG

>CP018322|1|1|38364-38608|CRISPRCasFinder
CTCTACTCCCCATGTTACTGGACGTCCGGGAACA	TCGCCAAAAGGTGCGTCCGGGAACACTTTTTCAAAATTTTTGGTTTTTGTGTGTATTGG
CTCTACTCCCCACGTTACTGGACGTCCGGGAACA	CCCTGTTATAGGCATTCAATTCCCAGCGAATTCTACATTTTTGATAGATTCATGACTTAGGTTAGTCTTCTTAATCAGTGAATC
GTCTACTCCCCCCGTTACTGGACGTCCGGGAACG

Protein	Signature genes	Signature genes Name	Protein_function
CP018322.1\|AUI84736.1\|42968_43550_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379881
CP018322.1\|AUI84739.1\|45596_45914_+\|hypothetical-protein	unknown	unknown	unknown
CP018322.1\|AUI84732.1\|39290_40439_+\|hypothetical-protein	unknown	unknown	unknown
CP018322.1\|AUI84724.1\|33538_33895_+\|hypothetical-protein	unknown	unknown	unknown
CP018322.1\|AUI84728.1\|37027_37333_+\|hypothetical-protein	unknown	unknown	unknown
CP018322.1\|AUI84891.1\|37436_37835_+\|hypothetical-protein	unknown	unknown	unknown
CP018322.1\|AUI84735.1\|42732_42912_-\|hypothetical-protein	unknown	unknown	unknown
CP018322.1\|AUI84737.1\|43546_44398_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374893
CP018322.1\|AUI84738.1\|44394_45597_+\|type-II-secretion-system-protein-E	unknown	unknown	gnl\|CDD\|131576
CP018322.1\|AUI84729.1\|37911_38175_+\|hypothetical-protein	unknown	unknown	unknown
CP018322.1\|AUI84722.1\|32434_32653_-\|hypothetical-protein	unknown	unknown	unknown
CP018322.1\|AUI84731.1\|39034_39253_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235394
CP018322.1\|AUI84725.1\|33915_34647_+\|hypothetical-protein	unknown	unknown	unknown
CP018322.1\|AUI84723.1\|32840_33281_+\|hypothetical-protein	unknown	unknown	unknown
CP018322.1\|AUI84734.1\|41709_42705_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271184
CP018322.1\|AUI84890.1\|34971_35469_+\|hypothetical-protein	unknown	unknown	unknown
CP018322.1\|AUI84727.1\|36375_36810_+\|hypothetical-protein	unknown	unknown	unknown
CP018322.1\|AUI84730.1\|38629_38845_+\|hypothetical-protein	unknown	unknown	unknown
CP018322.1\|AUI84726.1\|35515_36199_-\|hypothetical-protein	unknown	unknown	unknown
CP018322.1\|AUI84733.1\|40840_41257_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378444

Protein	Function_ID	Function_description	E-value
CP018322.1\|AUI84731.1\|39034_39253_+\|hypothetical-protein	gnl\|CDD\|235394	PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional.	0.00156752
CP018322.1\|AUI84734.1\|41709_42705_-\|hypothetical-protein	gnl\|CDD\|271184	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	2.59015e-08
CP018322.1\|AUI84738.1\|44394_45597_+\|type-II-secretion-system-protein-E	gnl\|CDD\|131576	TIGR02524, ATP-binding_protein, Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.	3.4428e-65
CP018322.1\|AUI84737.1\|43546_44398_+\|hypothetical-protein	gnl\|CDD\|374893	pfam16932, T4SS_TraI, Type IV secretory system, conjugal DNA-protein transfer. T4SS_TraI is a family of putative Gram-negative, largely Proteobacterial, type IV conjugal DNA-Protein transfer or VirB secretory pathway (IVSP) proteins.	4.30516e-29
CP018322.1\|AUI84736.1\|42968_43550_+\|hypothetical-protein	gnl\|CDD\|379881	pfam16816, DotD, DotD protein. The DotD protein is a component of the Dot/Icm type IVB secretion system. It is involved in the outer membrane targeting of DotH.	1.29287e-05
CP018322.1\|AUI84733.1\|40840_41257_-\|hypothetical-protein	gnl\|CDD\|378444	pfam10544, T5orf172, T5orf172 domain. This domain was identified by Iyer and colleagues.	4.73359e-11

>CP018322.1|AUI84729.1|37911_38175_+|hypothetical-protein
MLTINDDCFFWNDEERERIPESRAGGYQVQNNNGDCFPDFKHIVFESEDVARRLLVTAICVTKQNDWRRVFISLEEISEDSKLLVRL
>CP018322.1|AUI84891.1|37436_37835_+|hypothetical-protein
MSIIFRVKDKTCYALKSDSVGKPYWTAGGLCLPHDYMRSIPMFDDYCESGELIETARLCVSYYDGGCGDYCMEVYRKTLISGEERNYIDWQHDEILEPQLLRDLQWLLNNREQCVTNSEYRLVSLTKPAWGF
>CP018322.1|AUI84728.1|37027_37333_+|hypothetical-protein
MQADYKVLAEYKKMVDQVSSVYGERTKETIIKYIDTTLKNELKKTKIISSLFVVFGILLTPILIGIPMIVVGAVLFYIGPFRISRLIEQYKELVESDTSLA
>CP018322.1|AUI84727.1|36375_36810_+|hypothetical-protein
MNIKQAAHFSLITLSHQIKLAGGAFNSKTKAVPIQDTFQTLYIFETDNGIKGLLSRDEFSVVTFNAGGLFNVSYLNESGEYTLRQIAISDDGKKNFMNPTFLTSDFDELESVLKEKFPSIVFRYLPNPVEKIFSDGDSVNKYTS
>CP018322.1|AUI84726.1|35515_36199_-|hypothetical-protein
MRIKNYLWIAGTYESGKPETFERVFRVTEYGSNRKVQCSVKLIMEHGLPVQDGSVDKWSLAVSTSGHELCLPTDTIFNQKGLGIGTFLRDRVVEQAKVQFKGMPIKSAWLSPRDGNEENFKRREKFYTSGGFDVSYSDKATGDGNVFASSIDKLKVSKPVSDYYILEDKDLLGLFIDRHNQHKTELNEANRKLKEASKQRDKHLKNARRAYWVLIVCAIIMFILFNK
>CP018322.1|AUI84890.1|34971_35469_+|hypothetical-protein
MYVVCDDYACEDLTDFESQSLHEFVELVEEDIKTVSCKLEGEGYKLIEAGGEVFALSGKERTYKTARFSVTIKEVGADPFDLEMICEDTYEKVWSQFVSGEARYACFEVTVTTNSDNIEISSVRSPLFIILNNVTSGKVVSDKRAFCSEAIQEARNWIKGHRLAA
>CP018322.1|AUI84725.1|33915_34647_+|hypothetical-protein
MTNPKKSKLTSLIIYESMVQMGIIVDGEIRANGKSKSGAGMDLCLERSSDLDNFNESGTQAFSLAHYSTAGGDAICELDMIFFYHTGKEKVEAYSYQTSVPPVFEVVYPKPGEHISSNYRELNAFAKQWMENLLEQGHSSSWVDSTFNSAEPSVPFELQKRVSFAQMVELEVINTLTTALLGSTVLSINHASNSIVLDLDEARHLEEEGASILPVEDMTQSLISAGYKKEDIETITHFELYAS
>CP018322.1|AUI84724.1|33538_33895_+|hypothetical-protein
MTIINRNQLKAAFQPEQAERALLTLVVDKSLQKFGLNFPVVSMPFVREEVATTKGSFTALSNVCYTLDSDEATFASIEKLLIEVGISHNVVSVEVIGGNVDETFYQVKLNIEAMEVAA
>CP018322.1|AUI84723.1|32840_33281_+|hypothetical-protein
MFGFMECKVNNPELAKTRYTTHAYVYAKRDDFKVGALIEVPSGMGGLFTTKVVKIESGVATCIKPYCRDHGKQEFEVFINPPLISVEEILSLANVIYEVERRQAIKSDEFELLERARVNGLIARFNSWSWTEAGVEVFRKAKELYQ
>CP018322.1|AUI84722.1|32434_32653_-|hypothetical-protein
MTTLRSKAFNFPATGDFKCELTLIENWDGAYIVKVHGDERGIHSKNMEKPFTDINKAKSFYDEKDKTLSEAA
>CP018322.1|AUI84730.1|38629_38845_+|hypothetical-protein
MNTIEIQEEITWVIMRYVIHYIGLRVLKRSGLKRNIEYCSRTTTRTLIFAKFRHFARYGNIFAVWGSNEEL
>CP018322.1|AUI84731.1|39034_39253_+|hypothetical-protein
MKQNLNNAIPHEPTKLALSKGEVELLETAFKKLGRNSHLTPVQSKMSSLRIGANAKRIYQQVLIANGVRFEV
>CP018322.1|AUI84732.1|39290_40439_+|hypothetical-protein
MLIIIILITFTVMAFTGITWFCLNFLLEIRHAIDYEKIQSMLTGYKIAGGLITLFWVNLYITHKYKNSSSYTLFFDMPALVFLLFGVGYFAVWLTQYIAEEEIPDDWKACSRLTSLITTGQGYKKHTDFLLFNERIPIEFKHYYKAFIPLEMCALNEYRALIESTSDVTVFDALSGLIAITQVEGALDSAQEYPLHQLVISTSTVMEDRLYEAYLKFKNLSLRKRSAAENQLYKSIYREVGVHDIAAISSELLIKEVQRNNEISSKELFFKFTRQRLNGLDYSNFNDYEKDAIAKAIVYSKGNLRIFYSELQETETSALPLIEVVGKGEAGKGFTNAMFMKMISPLFVTILWLNFTWILIKSWFIYMSLCLRFIGSRSKKTI
>CP018322.1|AUI84733.1|40840_41257_-|hypothetical-protein
MAGQSPSGPGYIYILVNETNPNEIKIGLSVNPARRVKQLHSSGTAMPMYFKYLWHVPNMKLAEEAAHEIMRGHRVNPRREFFHLVPDEAALDLETPHQHFSGHDLASDYLHTFRELIEDGWDYLNIRYVRITSLPREN
>CP018322.1|AUI84734.1|41709_42705_-|hypothetical-protein
MNINRTKADSTIQDYQSRVATLTKRCGLEINDENYYKKLVEQLLSEKSQISTSTWRKKKAALVWYLEKNNIQHLADSLLAISSEGAIKKPNKTSACKKKHLTKKEEDTIRQELETLHDVGDFWGLQLLPITELILTTGLRPIEMKAAKLYINQQELHSEIQEHLGHYSGSYPVLKIRNAKNTNGRSFGEFRFVDLSEVSQRSILAIRLALLHVNKARTTENDSVSFEDYYEVLRKAFSRLVNRLFSDKRKKISLYTYRHQCIANLKSAKTPLSHIAAIVGHGNDLTASEHYGKGRFGRGDAGLVKANTIDVGKVKLLFDKKVNKNFQPTQN
>CP018322.1|AUI84735.1|42732_42912_-|hypothetical-protein
MRNCCFPFKTYFIVFKEQKKCQMGTVKTDFRKTIQSVSLSRNQLSDLFNISDLYKINKK
>CP018322.1|AUI84736.1|42968_43550_+|hypothetical-protein
MAFARVPHITAFLPFGVFVLFYQSEQFEVSMKRGFCILACLSAISGCSSTSEQYLSVERVSPVEERISALAEVMVERANRVEQLKKAQYLNLTGNSFQTSEIGYLPILNQHKNLGKNYIGNLEPFVKRLSVVAGMEAPRFIGPKPSIDITLNIDTDYKTVYSMLEQAGTLAGSRADVVYKAAENLIEVKYPTR
>CP018322.1|AUI84737.1|43546_44398_+|hypothetical-protein
MKAKILTLLSLVIVANFSVGAEELKYPLEFNEISDSEDNKAMLNVLRESGINNPKRDDSKVGEDARIKKVGEAAFKWGIKEGQYHYQIQYSKELEKYDSKLSQFANFSQFIVDGRLLLPKVSLAERLFEKVANTKVREVGFSITIEQPAKLVSAPPTWRDYLNFHIDKPLKPSAVFLPRSSQEDLVFNYEFKRGWELGRSQAEVILEEGFNRLIVDLENHYNFIESEISNVLRMPTIKTTEMGVVVSADGRTLYGDDVIFTIDQKTTFKSLENWTPIFVSEEE
>CP018322.1|AUI84738.1|44394_45597_+|type-II-secretion-system-protein-E
MIQVPKRIDGEFVEKLLEWASNNKVNDVVIESDSPLWVKRLGVMEQLSERNISQAEVREVLQSFYQQSGPDTLVTGEYIKFPFEVLAKDETSYRYRVTATGVQGERNDRGIEIIFRPFPDEAPPPAQLSLPADFVQAFNSSYGVIYVTGPTGSGKSTSFASVLTERIKNKSERIVTFEDPIEFDLKKIKDRKANVVQSEVPFHLSTYEKATHNLLRRSPDIVFFSEVRGTEVGRELLRIANSGHLVGTTLHANSCEMTLPRFVDMFKHDEKAKVTADIVETTVGILNQRLVKTSDGKNRVGVFSSLIFDESIRDKIYSEVSSDYSKLKSVMSKMISKKGLPFIEDLRDKFRTGLIEINSFEKLTRQFGDERDIQEIRNQAKSHFERGFISEDEMKMYRNK
>CP018322.1|AUI84739.1|45596_45914_+|hypothetical-protein
MSEKVQITTNVARENRLWRAGKRAKLNLVAIQVDALSVVPFPLLYFIKSKWYLLACLMWVLVIGTIDKFKMTPIQGLKRVRAIIAGKQRFITRYSNRQRRFTNGN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP018322_1	1.1\|38398\|59\|CP018322\|CRISPRCasFinder	38398-38456	59	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	37850-37908	0	1.0
CP018322_1	1.1\|38398\|59\|CP018322\|CRISPRCasFinder	38398-38456	59	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	37856-37914	0	1.0
CP018322_1	1.1\|38398\|59\|CP018322\|CRISPRCasFinder	38398-38456	59	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	37873-37931	0	1.0
CP018322_1	1.1\|38398\|59\|CP018322\|CRISPRCasFinder	38398-38456	59	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	276241-276299	0	1.0
CP018322_1	1.1\|38398\|59\|CP018322\|CRISPRCasFinder	38398-38456	59	NZ_CP018322	Alteromonas macleodii strain Te101 plasmid pTE101a, complete sequence	38398-38456	0	1.0
CP018322_1	1.2\|38491\|84\|CP018322\|CRISPRCasFinder	38491-38574	84	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	37943-38026	24	0.714
CP018322_1	1.2\|38491\|84\|CP018322\|CRISPRCasFinder	38491-38574	84	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	37949-38032	24	0.714
CP018322_1	1.2\|38491\|84\|CP018322\|CRISPRCasFinder	38491-38574	84	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	37966-38049	24	0.714
CP018322_1	1.2\|38491\|84\|CP018322\|CRISPRCasFinder	38491-38574	84	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	276334-276417	24	0.714
CP018322_1	1.2\|38491\|84\|CP018322\|CRISPRCasFinder	38491-38574	84	NZ_CP018322	Alteromonas macleodii strain Te101 plasmid pTE101a, complete sequence	38491-38574	24	0.714

1. spacer 1.1|38398|59|CP018322|CRISPRCasFinder matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 0, identity: 1.0

tcgccaaaaggtgcgtccgggaacactttttcaaaatttttggtttttgtgtgtattgg	CRISPR spacer
tcgccaaaaggtgcgtccgggaacactttttcaaaatttttggtttttgtgtgtattgg	Protospacer
***********************************************************

2. spacer 1.1|38398|59|CP018322|CRISPRCasFinder matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 0, identity: 1.0

tcgccaaaaggtgcgtccgggaacactttttcaaaatttttggtttttgtgtgtattgg	CRISPR spacer
tcgccaaaaggtgcgtccgggaacactttttcaaaatttttggtttttgtgtgtattgg	Protospacer
***********************************************************

3. spacer 1.1|38398|59|CP018322|CRISPRCasFinder matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgccaaaaggtgcgtccgggaacactttttcaaaatttttggtttttgtgtgtattgg	CRISPR spacer
tcgccaaaaggtgcgtccgggaacactttttcaaaatttttggtttttgtgtgtattgg	Protospacer
***********************************************************

4. spacer 1.1|38398|59|CP018322|CRISPRCasFinder matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgccaaaaggtgcgtccgggaacactttttcaaaatttttggtttttgtgtgtattgg	CRISPR spacer
tcgccaaaaggtgcgtccgggaacactttttcaaaatttttggtttttgtgtgtattgg	Protospacer
***********************************************************

5. spacer 1.1|38398|59|CP018322|CRISPRCasFinder matches to NZ_CP018322 (Alteromonas macleodii strain Te101 plasmid pTE101a, complete sequence) position: , mismatch: 0, identity: 1.0

tcgccaaaaggtgcgtccgggaacactttttcaaaatttttggtttttgtgtgtattgg	CRISPR spacer
tcgccaaaaggtgcgtccgggaacactttttcaaaatttttggtttttgtgtgtattgg	Protospacer
***********************************************************

6. spacer 1.2|38491|84|CP018322|CRISPRCasFinder matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 24, identity: 0.714

ccctgttataggcattcaattcccagcgaattctacatttttgatagattcatgacttag	CRISPR spacer
ccctgttataggcattcaattcccagcgaattctacatttttgatagattcatgacttag	Protospacer
************************************************************

7. spacer 1.2|38491|84|CP018322|CRISPRCasFinder matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 24, identity: 0.714

ccctgttataggcattcaattcccagcgaattctacatttttgatagattcatgacttag	CRISPR spacer
ccctgttataggcattcaattcccagcgaattctacatttttgatagattcatgacttag	Protospacer
************************************************************

8. spacer 1.2|38491|84|CP018322|CRISPRCasFinder matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 24, identity: 0.714

ccctgttataggcattcaattcccagcgaattctacatttttgatagattcatgacttag	CRISPR spacer
ccctgttataggcattcaattcccagcgaattctacatttttgatagattcatgacttag	Protospacer
************************************************************

9. spacer 1.2|38491|84|CP018322|CRISPRCasFinder matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 24, identity: 0.714

ccctgttataggcattcaattcccagcgaattctacatttttgatagattcatgacttag	CRISPR spacer
ccctgttataggcattcaattcccagcgaattctacatttttgatagattcatgacttag	Protospacer
************************************************************

10. spacer 1.2|38491|84|CP018322|CRISPRCasFinder matches to NZ_CP018322 (Alteromonas macleodii strain Te101 plasmid pTE101a, complete sequence) position: , mismatch: 24, identity: 0.714

ccctgttataggcattcaattcccagcgaattctacatttttgatagattcatgacttag	CRISPR spacer
ccctgttataggcattcaattcccagcgaattctacatttttgatagattcatgacttag	Protospacer
************************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP018321

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP018322

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection