CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP017372	Halorhodospira halochloris DNA, nearly complete genome, strain: DSM 1059	10 crisprs	Cas9_archaeal,c2c9_V-U4,DEDDh,cas14j,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,RT,cas6,WYL,csx16,csx1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	1	26	3	0

1. AP017372

CRISPR-Cas detection and classification

Crispr_ID: AP017372_1

• CRISPR_ID: AP017372_1
• CRISPR_location: 306593-306723
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of AP017372_1

Consensus_repeat	Method
GGAGGCTTCATGGCGCCATCCCGGCGCCAAGACCTC	CRISPRCasFinder

spacers of AP017372_1

>1.1|306629|59|AP017372|CRISPRCasFinder
TACGAATCCCCCGGAGCCATTTGCTACCCCGGTGTGGAGGACGCCGTGAATCCATCCCT

CRISPR arrays and Neighbor proteins around AP017372_1

CRISPR arrays

The CRISPR arrays of AP017372_1

>merge|AP017372|1|306593-306723|CRISPRCasFinder
GGAGGCTTCATGGCGCCATCCCGGCGCCAAGACCTCTACGAATCCCCCGGAGCCATTTGCTACCCCGGTGTGGAGGACGCCGTGAATCCATCCCTGGAGGCTTCATGGCGCCATCCCTGGCGCCAAGACCT

>AP017372|1|1|306593-306723|CRISPRCasFinder
GGAGGCTTCATGGCGCCATCCCGGCGCCAAGACCTC	TACGAATCCCCCGGAGCCATTTGCTACCCCGGTGTGGAGGACGCCGTGAATCCATCCCT
GGAGGCTTCATGGCGCCATCCCTGGCGCCAAGACCT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
AP017372.2|BAU56943.1|295239_295698_-|heat-shock-protein	unknown	unknown	gnl|CDD|223149
AP017372.2|BAU56956.1|315358_316078_-|cAMP-binding-proteins---catabolite-gene-activator-and-regulatory-subunit-of-cAMP-dependent-protein-kinases	unknown	unknown	gnl|CDD|223736
AP017372.2|BAU56944.1|295798_296674_+|voltage-gated-sodium-channel-subunit	unknown	unknown	gnl|CDD|366146
AP017372.2|BAU56948.1|301841_303044_+|DNA-double-strand-break-repair-protein-Mre11	unknown	unknown	gnl|CDD|277319
AP017372.2|BAU56951.1|307756_311476_+|protease-related-protein	unknown	unknown	gnl|CDD|143478
AP017372.2|BAU56949.1|303040_306493_+|DNA-double-strand-break-repair-Rad50-ATPase	unknown	unknown	gnl|CDD|227061
AP017372.2|BAU56960.1|319088_319292_+|gamma-glutamyltranspeptidase	unknown	unknown	unknown
AP017372.2|BAU56947.1|299373_301641_-|protein-export-cytoplasm-protein-SecA-ATPase-RNA-helicase	unknown	unknown	gnl|CDD|235521
AP017372.2|BAU56954.1|312818_313982_-|S-adenosylmethionine-synthetase	unknown	unknown	gnl|CDD|235374
AP017372.2|BAU56955.1|314215_315226_+|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|223135
AP017372.2|BAU56946.1|297114_299355_+|lead	unknown	unknown	gnl|CDD|319783
AP017372.2|BAU56940.1|292238_292508_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU56961.1|319400_320219_+|DnaJ-like-protein-DjlA	unknown	unknown	gnl|CDD|236512
AP017372.2|BAU56950.1|306887_307202_-|hypothetical-protein	unknown	unknown	gnl|CDD|273344
AP017372.2|BAU56958.1|316667_317558_-|phosphoribosylaminoimidazole-succinocarboxamide-synthase	unknown	unknown	gnl|CDD|237571
AP017372.2|BAU56941.1|292509_294348_-|carbon-starvation-protein-A	unknown	unknown	gnl|CDD|224877
AP017372.2|BAU56945.1|296660_296873_+|heavy-metal-binding-protein	unknown	unknown	gnl|CDD|238219
AP017372.2|BAU56942.2|294686_295124_+|universal-stress-protein-family	unknown	unknown	gnl|CDD|366180
AP017372.2|BAU56959.1|317581_319036_-|deoxyribodipyrimidine-photolyase	unknown	unknown	gnl|CDD|223492
AP017372.2|BAU56953.2|311767_312796_-|epoxide-hydrolase	unknown	unknown	gnl|CDD|132100

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
AP017372.2|BAU56943.1|295239_295698_-|heat-shock-protein	gnl|CDD|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	6.65219e-37
AP017372.2|BAU56956.1|315358_316078_-|cAMP-binding-proteins---catabolite-gene-activator-and-regulatory-subunit-of-cAMP-dependent-protein-kinases	gnl|CDD|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.73781e-37
AP017372.2|BAU56944.1|295798_296674_+|voltage-gated-sodium-channel-subunit	gnl|CDD|366146	pfam00520, Ion_trans, Ion transport protein. This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.	3.17069e-40
AP017372.2|BAU56948.1|301841_303044_+|DNA-double-strand-break-repair-protein-Mre11	gnl|CDD|277319	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.33443e-20
AP017372.2|BAU56951.1|307756_311476_+|protease-related-protein	gnl|CDD|143478	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active site tetrad residues are distributed between the C1 and C2 domains, with serine and histidine on C1 and serine and glutamate on C2.	2.30912e-65
AP017372.2|BAU56949.1|303040_306493_+|DNA-double-strand-break-repair-Rad50-ATPase	gnl|CDD|227061	COG4717, COG4717, Uncharacterized conserved protein [Function unknown].	7.50358e-20
AP017372.2|BAU56947.1|299373_301641_-|protein-export-cytoplasm-protein-SecA-ATPase-RNA-helicase	gnl|CDD|235521	PRK05590, PRK05590, hypothetical protein; Provisional.	1.37939e-12
AP017372.2|BAU56954.1|312818_313982_-|S-adenosylmethionine-synthetase	gnl|CDD|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
AP017372.2|BAU56955.1|314215_315226_+|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase	gnl|CDD|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	1.41502e-178
AP017372.2|BAU56946.1|297114_299355_+|lead	gnl|CDD|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
AP017372.2|BAU56961.1|319400_320219_+|DnaJ-like-protein-DjlA	gnl|CDD|236512	PRK09430, djlA, co-chaperone DjlA.	2.11436e-58
AP017372.2|BAU56950.1|306887_307202_-|hypothetical-protein	gnl|CDD|273344	TIGR00927, retinal_rod, K+-dependent Na+/Ca+ exchanger. [Transport and binding proteins, Cations and iron carrying compounds].	0.00515261
AP017372.2|BAU56958.1|316667_317558_-|phosphoribosylaminoimidazole-succinocarboxamide-synthase	gnl|CDD|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
AP017372.2|BAU56941.1|292509_294348_-|carbon-starvation-protein-A	gnl|CDD|224877	COG1966, CstA, Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms].	9.44545e-164
AP017372.2|BAU56945.1|296660_296873_+|heavy-metal-binding-protein	gnl|CDD|238219	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.	6.54702e-11
AP017372.2|BAU56942.2|294686_295124_+|universal-stress-protein-family	gnl|CDD|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	1.47871e-26
AP017372.2|BAU56959.1|317581_319036_-|deoxyribodipyrimidine-photolyase	gnl|CDD|223492	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].	2.49625e-145
AP017372.2|BAU56953.2|311767_312796_-|epoxide-hydrolase	gnl|CDD|132100	TIGR03056, bchO_mg_che_rel, putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. [Energy metabolism, Photosynthesis].	2.68671e-78

Protein sequences

>AP017372.2|BAU56949.1|303040_306493_+|DNA-double-strand-break-repair-Rad50-ATPase
MRLTRLEIQTLPGIEPGFAITDFGPGLNLVTGPNGSGKSSLIRALQALVVEPGPDDHFAIAVAASFSGDGQWTVRRTGQQQVWELDGRPAHSPRLPRRDVLRCYWLTMEDLLVADERDDRLGAELRRSLAGGYDLVALRNEEQFRVGKQNGVREAKALREAQAEQRRVEAEYADLYRQEAQLPELDEQIDAARRAAGRSEQLRQALALLQARRRRQQVEAVLADFATGLERLRGDEMERLNKLEQRRLNLEHELRRQGERREQARDQLAAAGFGDTPRPQAVELDSARDELEEARRAQEQLDQEQRQLERARASEQRARAELAGTANTEQSNPESANLISPQALHEAESLARRLQRCQAQQADLQGKLEGMPAATFATSHVELYWQAAHALRVWLAVGGFDARLLYAVLALALAGCGAAGVGAYQVEDWIALGGSVLAGLGIAAAGWLAPSDDRRAAQQRFSETGLQAPSRWRADAVRERLQELETARADLQRRQADAERAAELRNALQQVDKELAELEAERHELGHRLGFDPQLTAAALDRFVRLSEQLDRARDEGAAAQENCRRLEKTLEKSLARVRQHLAASGVECSAATGGLVELESALHELRERSRRAESAEREYHQAHSEQQRLERELDELASERGQLFEQAGLEEDQRDELARRCEQHPAWREQRDRLREAAAVEAERRSALASDEQLLSRVDSGDEQGLQAELEQAENEAAELEKLRDQASTIRTRLHDAGRDWRLEQAMAATESRQAALHERFAEGLFAEAAQVLLDNVEREHRQHHEPQVLSDARDRFRRFTRHNYDLCLGEDFTFFARDLSQQVDRDLGELSTGTRMQLLLAVRLAWADQLEQDRESLPLFLDEALTASDEERFVLIGATLGQMAREEGRQVFYLSARRHELPLWQRAVGELPHVIDLAQIRFGAASDSAQVDFALPERDPVPAPGEQEPAYDYAQRIGVPAIAPRAPAGSMHIFHLLRDDLPLLHRLLEDWRTMTLGQFEGLLDSSAAPAVIAAQTERQRLRGRCSVARLWLNAWRYGRGTPVDRTVLERSAAVSATFIDRVAELCDGLSGDGEALIEALRNGEVRRFQSSKIDELAQWLEDEGYIDPATPLDAEARERQVVQDAAMIASVDEIRRVVAWLEAGLAAA
>AP017372.2|BAU56948.1|301841_303044_+|DNA-double-strand-break-repair-protein-Mre11
MVDAALEAEVDVVVLAGDVVEHENDFYEAYRELYQGVQRLSAGGIKVYAVVGNHDVHVLPRLAGQIENIELLGRAGEWESVTLQVKSERVTFWGWSFPRPQVTYSPLAGQRLERGAGPNIGVLHCDRGQSSSPYAPVAEGELVAAGVDCWLLGHTHAADDCSYDYKSAYSGDGLGGYLGGYLGSPVGTDPGEPGAHGPWLITIEGGQIGRIEQWPLAALRWEELRVDLSAITAAEQARERVLEVARDLDQQLQDAPPQAVGLRVVLGGQSDLGSEAVALFGDEARDHLLNGAAGTHYFIERVQLATRPSIDLAELAADSDPPGLLARQLLLLERPLDDPQRQQLIAEARRRLQERAREARWQEISPATIDDEQAAEWLRQAGLRILERLRAQQPQEEAEQ
>AP017372.2|BAU56947.1|299373_301641_-|protein-export-cytoplasm-protein-SecA-ATPase-RNA-helicase
MKDHEYPPYEESISFHSQIRRLVEDDDLQDEEVLDGLLSIVTSDLPAELEIQIDSPRPESVAELYEAIEDHGPEIPKNLFIDMAWRLASRQEDIWQRLALYWALDTLWELRHIVLLCFLSHAQDQTLSPYVRARLPIIAHWLPDEECAELVADIIDDAPTDGSSAKPVFEQQASVDGIYLSIPEGGALQHLAITGHNEGEHFLGLVELEVDSGFYSVETLCGLDQRQLSEELELLQIDSPLGEATPDIAIALLNNALASQLESEEPPPASLIDLVTIFALQGQIAPEPISTRQWLDILDPDNKLESLTPQKRGRLINQSAKWAEQFPIVDTWFDDNPESASIIDAYSSPNKRELELRRHLDVDRRPWWAEHCFRSALALQQGWNQDTWMSFAAVGKALLDGRELRKIPIFDSILSATLEAHERGCRCSGSSKLDEDLDGDPFSDPSLRPESLHIPDKLRQSLEGFYNREHAKAVWDSGFMGLHGYLFAIATHPEPISPSEWLGPLLNPDDQSQAGVAANKAEFSEIIGNLLQLYNVINSQVFEGVAELPEGCTLKSEPMDNFHPDAPVSQWARGFRTARRCFGHLLDWLDEAREDMPQNSQERENWEMEVAEVCGFSTMALEIFADRQKAERVCRGAQEDNEKTTIENMAKFAHTTFYESFSDIAIFAGTLRRDIDSDDDEQGSMGMPAGTAANASEKGEPRLDQIPFSTPSTQPPQQPGPQQPARSNKVGRNEPCPCGSGKKYKRCCGDPRNSH
>AP017372.2|BAU56946.1|297114_299355_+|lead
MAEQSLELVIEGMTCASCVARVERMATRLPGVHSASVSLPTERATISFDPAQVDSEQIIEAISKGGFKATVRRDQERSMPDSARELGSLWRDLWLAVALTIPLVAVAMGPMLLPGLDSAMQQVLAERSWLWVEWLLVTPVLLWAGRRFFARGAPALLRLHPEMNSLVMLGTSAAWLYSTTVLLWPELFPEQARGVYFEAVGVIITLVLVGRYFELKSRGQASQAIRRLLELQVPSARVIRQGREEEVEVKRLEPGDQVVVRPGERLPVDGRIIEGSSYIDESMVTGEPVPVARGVGDEVVGGTVNRSGSFTFAASRVGADTVLGQIVRMVEGAQASKPPIQSLVDRVAGWVVWAAIALAIGAALSWSLLGFGIDHALVVAAAVLLIACPCAMGLATPMAIMVGTGRGAEQGILFRRGAAFQASAGVNVVVMDKTGTLTVGRPVLTDIEPADGFMADDVLVQAAAVEGRSEHPLAEAIVAAAHARNLGVAEVADFAAVPGYGVQGKVDGEEIVVGARRFLNQLQIMVPRGLHERAAELAKQGRTPLFVAIGGRVAALLAVADPIKEGSKPAINALHSMGLRTVMLTGDDRETADAVARQIGITEVKADVLPADKEAVIGEMQSKGLRVAFVGDGINDAPALARADVGVAVGTGTDVAIEAGDVVIMAGDPRSMARGLSLARRTFRTIRQNLFWAFVYNITLMPVAAGVLYPLWGVLLSPMMAAAAMSLSSLLVVSNSLRLRRVELVR
>AP017372.2|BAU56945.1|296660_296873_+|heavy-metal-binding-protein
MEAVKIRIEGMSCSHCEASVREVLETLPGVEQVIEVSAEAQQAQVKGRPDPALVAQRLEEIGFAGMVTDD
>AP017372.2|BAU56944.1|295798_296674_+|voltage-gated-sodium-channel-subunit
MFSSGDNNSQHNYSAGLRGRIQWLVETPWFQNTIIVLICINGVTLGLVTSDDIKAWAGGLIPLINQVIIGVFVVEVALRIVAWGPRFFRGPWNLFDFFVVAIALVPDGGAYSVLRALRILRLLRLISQVGRLRIIVESLLRALPGIGWIGVLLLLVYYVFAVMGTELYGESFPEFFGTVGLSMYTLFQVMTLESWSEAIARPVMEQYAGAWFYFVTFILVSAFTVLNLFIGIIVNSMQSLHWEEEEEKRMESEGKAHTEREEMLHQIKEMNAKIDRLERRLSNNGERDGSG
>AP017372.2|BAU56943.1|295239_295698_-|heat-shock-protein
MAMMRYDPLNTLRQLQTDLDRIFSAGSQGMLGTPSENGESASNWMPAVDIAEDDKAYHVHVDLPGVDAENIDVAMDNGMLTIKGYREDNKSEDGPNWKRVERVRGTFFRRFTLPENVDADNIQARCRNGVLEVAVPKREEQPGKRIKVEQAS
>AP017372.2|BAU56942.2|294686_295124_+|universal-stress-protein-family
MSEIVVGLDGSEGSQRALEWAVDEARLRSTGVRAVYVIDRRYLDSELGVLVAQPASELEAEAHGIVDRAIESLSAADDVAIDKHVLHAKDHGVVGTLLDQIGADAQLLVVGSRGHGGFAGLLLGSVSHQILQHAPCPVVVVPYRR
>AP017372.2|BAU56941.1|292509_294348_-|carbon-starvation-protein-A
MSAIWLAMAALALYIFGWLWYSRYLANHIYRLDPNFITPAHRYRDGVDFVPTNKWILWGHHFTSVAGAAPIIGPAIAIYWGWGPALAWVALGTVFAAGVHDFGALVLSNRHRGQSIGTMANRIIGRRAKILFLFIILILILMVNAVFAWAIANLFINNPSAVLPVILQIPVAIWIGYKVLRRGGNLLLPSIIALALMYGTAVVTTYVEWLQIDLVRWFGGEGASTFVFGLEATPASFLIWILALLGYVYVASTLPVWKLLQPRDYINAQQLIVGLAILYLGLLLTQPQVTAPIYNNAAETSWFPLLFITIACGAISGFHGLVASGTSSKQLDREPDARTVGYLGALGEGILALIAIIAVATVFASQSEFLDSYSSFAKAGDVGIGNFVEGASVLASGVGIPSEIAATIVALIIVCFAATTLDSAVRLLRYIIGELGNEYRVHHLTRRHIGTSLAIGMTALLALVPDGGQGVGSGGYLLWPLFGTSNQLLAGITLMLISLWLFRQGRNPLPTLVPMIFLLAMTIWALTQQLVLDWSGVGEADAQWLLFALGAIILGFAVWILLEAIRLFYHREELEALRDPADETAEETNDSAENGRPTGKGQQTEQTDKGES
>AP017372.2|BAU56940.1|292238_292508_-|hypothetical-protein
MAQKLRERLAAFASGYDRMLRLGHEAEVRRELAEREDLIMLMLFSETMGLPNPASYYTLELYPALIESYHQWHKRMGMEHSPLDHVRCC
>AP017372.2|BAU56950.1|306887_307202_-|hypothetical-protein
MQNKTFLATLLASAFALASTSALAFDAAEGEDAGDPWAEPAGEEMEQDEGEAAQDPWGQPEEEAAEDPWGQPEGEAADPFGEPAEEGDTEGGEDLDDFEGGQQW
>AP017372.2|BAU56951.1|307756_311476_+|protease-related-protein
MLRKLFCLICIVAMGCFTVLTAAEREAVELPRFPSLSPDGEEIVFSWGGDLWRVGSDGGEATRLTAHQFDDLYSSWSGNGQWLVFNSMRDGYLNLYRMRRDGSELSQLTYSDRFIRSPDYSEDSDGEPVITFSSYLEGDVYREQRPYSLSPQGGEHSRLLEAFGSEPRLSPNGERVVFTRGGYYHGWNRRHYQGPEARNIWVYDFASEQFSAITSRDGDDGRARWLDDETLIFMSDREDRTVNLYRVALTENGSCDSQQDSADEPCEPISAAQAERLTPFDERDVRYFDVAPDAEKAVLQVWDSLYTLDLADPEAEPVKLSLRAGEVGRDKHELRRIDRDVTEAALSPDGQVMAYIAYGRVYVRNLDEHSPTRRVSPPNHARHKDLAWSPDGLTLYFTSDADGSESIYAARVLLTRDEIEQAYQQPGYELPTAAIDELPATRAPIAEEEADQQRPDEPERQQPERQPRQEDQRPADAENDSGASGVDEDPFGPHEPPDPIDPQPDPDPADPDPMGPDPLDPQPDPVEPEPSEPVADPDTVPEDELTDEVAEDADVEGLLDPERWHEAVQFVVSPLIADEQSSDRQASPSPDGNYLAFRRGRGDLKIKDLSSGEIEKLVPGWDSSIEWRWSPDSRYIAYSQNDLNFAANIFVVPVDGSHEPVNITRHPRNDLNPRWSQDGRKLAFISNRSNETYDIYRVYLDRGLERYSPRDITRYYRDSRRAAGQLEPLPVDLDERAAKLEELEEQPAELDLENAWRRVERVTATPVNEYALEITPGGDRYTFNRSGEGLMLRSWDGSESKRLGGVASVQQLSLTGDRLVYVSGGRAGVVKLDNAKHERPDISDRLRIDLREQSLQKFHEAARVIEEGFYRPDMKGLDWQGLVADYESLIERARTPSEFSDIANQLMGELAASHMGVNNPGDYIQRREPSGRLGIEHERVELADGVSGYRVLSLVPEGPAAEEPMPLRPGDVITAVEQQRFAGDESLLQVLRGRVGKELLITFRRPDDGPNVERQALITPISFSELARLKYDDFKRRSRNKVAELSEGRLGYVHIQAMNHVSLERFQADLYAAAHGKEGLIIDVRNNGGGHTTDRILTSLMSPVHAFTLPAGADENETGHYPQDRLDAPRYTAPANMLANEKSYSNAEILAHAFRTLNRGTLVGEQTYGGVISTGSRTLIDGATVRRPFRGWYLPDGTDMEHNGAQPDIHIEQRPEDEVAGRDRQLEKAVEDLLERLDS
>AP017372.2|BAU56953.2|311767_312796_-|epoxide-hydrolase
MRMPTPILVGLLIVIILLGASVACSLGSGGQEQAAETSADGENADPPRFPRWDVEGRDWPGRESSRFVEINGINWHYQVYGDGPVLLLVHGTAAASHSWHPLIAELAEHFTVINLDLPGHGFTSRPDAERFVMTEMAADLGDLLDHIGYQPELVVGHSAGAALLARMVVDGHISPQALISINGSFIRRQGPIGRFFAPVGRWIFESDRAANFFAGRVEDQQTVADALERMGTNLDERQVELYTRLVRTPGHIGSALRMMARWQLYELEPHLSKLDLPVVLVAGEEDGLVDPDEAVDVANRMPRASVIRLDGLGHFAHEEDPARTLEIIFNIADAKLQESFAR
>AP017372.2|BAU56954.1|312818_313982_-|S-adenosylmethionine-synthetase
MDEHYLFTSESVSQAHPDKIADQISDTILDAVLEADPHGRVACETAVKTGMVLLFGELTTAAEVDFETLVRDKVCELGYNHSQLGFDGNTCAVINALGQQSPDIALGVDRTDPEQQGAGDQGLMFGYATDETETLMPAPIQYAHRLMQRHSQLLQETTLQWLRPDAKAQVTFSYADGQPQAIDTVVLSTQHAADVDLETVREAVIEQIVKPVLPQQWLSAETRFLINPTGRFVVGGPLGDAGLTGRKVVVDTYGGVARVGGGCFSGKDPSKVDRSAAYACRYVAKNIVAAGLARRCEVQLSYAIGIAEPVSINVETFGTGKLPRAKLVELVRNHFDLRPYGIIRSLDLLRPIYAKTAAHGHFGREETGFTWERTDMAQTLADSAANI
>AP017372.2|BAU56955.1|314215_315226_+|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase
MTINVAINGYGRIGRNVLRALYESGRNDEIRIVAINDLGDAETNAHLTRYDTAHGRFPGDVKVEGGDLVVNGDRIKVCAERNPADLPWGDLGVDVVMECTGLFTSKEKAGAHIQAGAKKVLISAPGGKDVDGTVVYGVNQGVLTSGHEVISNASCTTNCLAPMVKAIQDKIGVEQGLMTTIHAYTNDQVLTDVYHSDLRRARSATHSQIPTKTGAAAAVGLVLPELNGKLDGFAIRVPTINVSLVDLTFTASRDTSVDEVNQVVKAAAGGELSGVLAYNEDPLVSIDFNHNPASSVFDATLTRAMGSRLIKACAWYDNEWGFSNRMLDTTVAMMRA
>AP017372.2|BAU56956.1|315358_316078_-|cAMP-binding-proteins---catabolite-gene-activator-and-regulatory-subunit-of-cAMP-dependent-protein-kinases
MEPNDCRNCEIRSLALFGEISSEGVDQFAEQTYQVQYPAGATIYEQGDKPEAAFTLREGIIKLVRNSGTDRSQIVRLLVKGDLMGIEGIFEEPYRQSAIALTPVRVCYLPLPMLDRMRTEEPRFTEALLGRWRRALNEVEELAVELGTRKAEERVAAFLLHWQEKAEHDDDNWMPFPLSRTELGQMLGLRVETVSRVLARWKREGIFEERSSRLRLLEPDCLDQLLAQGTETATAAHRE
>AP017372.2|BAU56958.1|316667_317558_-|phosphoribosylaminoimidazole-succinocarboxamide-synthase
MQNNNALYSSTLTSLELLHSGKVRDIYAIDEDRLMIVATDRLSAFDVILPDPIPGKGAVLTRLSNFWFRHTAGIADNHLLDDDPHEFLTPQESELLGDRAVVVKRLRPLPVEAIVRGYLAGSGWQSYQQDGTVSGVALPAGLQQSQRLPQPIFTPSTKAQLGEHDEAISFAQTAELIGEELAEQIRTISLRVYEHACIHAEKCGLIIADTKLEFGLGEDGQPVIIDELLTPDSSRFWPADAWQPGTTPPAFDKQFIRDHLETLGWNKEPPAPSLSADVIAKTAEKYSEAERRLVVS
>AP017372.2|BAU56959.1|317581_319036_-|deoxyribodipyrimidine-photolyase
MPQTAIIWLRRDLRLQDQPAFAAATKIADYVLPLYIHAPHEERPQAGAASRWWLHHSLSSLRQELRERGSDLFLDSGSSTSTLMRWAQANSASLVLCTAISEPWAEERDNKTAAELAQAGIELRITADGLLTDPHAIRNRSNTPYRAFTPFWRQVRGQLNPPQAKPAPTSLPPPPGHAHNSSAELEQLNLLDRVRWYDKFADYWQPGSTAASHRLARLSPEFFAAYPDERDFPAQPGTSLLSPHIHFGELSIREVWHQAAHSQPENHSGPANHSGVETYLAELGWREFAYHLLTQQPNLHSYPVDRRFAAMPWRDDPDNSLYSAWHLGQTGIPLVDAGMKELWATGWMHNRVRMVVGSFLVKNLRLPWQLGEEYFRDTLVDWDLASNSMGWQWVAGCGADAAPYFRIFNPVRQGERFDPEGEYVRRWLPQLGALNKKQIHQPWTAPAATLDSAGIRLGKDYPWPITDLQSSRREALEAFQSIKG
>AP017372.2|BAU56960.1|319088_319292_+|gamma-glutamyltranspeptidase
MSSIYVLGRPSIGNLENFAGATIRPGAEDAVNPSLEASWRHLWRQDLHTGAAKWLRGSCIGLLQWAF
>AP017372.2|BAU56961.1|319400_320219_+|DnaJ-like-protein-DjlA
MQLYRIIQNWLGRILGALAGGLAAGPLGIALWLGIVLGFLAGYGVDVWVRVTQVVGLVWSRCGLGFDQRVFIGTTAMVMGYVAKHDGRVSEAEISAARRVLNELPLDELGRKRAITVFNRGKDPGAPLRWILLMLRTVGRRRPEELARFLDFQLRVAAADGLPDAGREKLLRWIWRHVGVSGVDLDARLDGMRRGKLNRTVRPTIDHAYKLLGVSRNASSEQVRKAYRRAISKSHPDRMVGNGHSEQEIEEASERTRQIRAAYEAIREVRGS

Crispr_ID: AP017372_3

• CRISPR_ID: AP017372_3
• CRISPR_location: 540570-540664
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of AP017372_3

Consensus_repeat	Method
TTCACGGCGTCCTCCACACCGGGG	CRISPRCasFinder

spacers of AP017372_3

>3.1|540594|47|AP017372|CRISPRCasFinder
CGGATGGTGGCGCCGGCGAAGTTTTAGAGGTTCCCTCCAGGAGTGGG

CRISPR arrays and Neighbor proteins around AP017372_3

CRISPR arrays

The CRISPR arrays of AP017372_3

>merge|AP017372|3|540570-540664|CRISPRCasFinder
TTCACGGCGTCCTCCACACCGGGGCGGATGGTGGCGCCGGCGAAGTTTTAGAGGTTCCCTCCAGGAGTGGGTTCACGGCGTCTTCCACACCGGGG

>AP017372|3|2|540570-540664|CRISPRCasFinder
TTCACGGCGTCCTCCACACCGGGG	CGGATGGTGGCGCCGGCGAAGTTTTAGAGGTTCCCTCCAGGAGTGGG
TTCACGGCGTCTTCCACACCGGGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
AP017372.2|BAU57212.1|542204_542891_-|integral-membrane-protein	unknown	unknown	gnl|CDD|198415
AP017372.2|BAU57203.1|533325_533550_+|SSU-ribosomal-protein-S18p	unknown	unknown	gnl|CDD|178997
AP017372.2|BAU57215.1|543860_545045_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU57208.1|537707_539030_+|DNA-repair-protein-RadA	unknown	unknown	gnl|CDD|236994
AP017372.2|BAU57218.1|547454_548738_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl|CDD|235422
AP017372.2|BAU57220.1|551639_551912_+|DNA-binding-protein-HU-beta	unknown	unknown	gnl|CDD|259853
AP017372.2|BAU57209.2|539069_539450_-|hypothetical-protein	unknown	unknown	gnl|CDD|377796
AP017372.2|BAU57214.1|543357_543828_-|flagellar-biosynthesis-protein-FliL	unknown	unknown	gnl|CDD|377123
AP017372.2|BAU57204.1|533562_534447_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU57219.1|548873_551336_+|ATP-dependent-protease-La-Type-I	unknown	unknown	gnl|CDD|223542
AP017372.2|BAU57213.2|543036_543243_-|hypothetical-protein	unknown	unknown	gnl|CDD|235668
AP017372.2|BAU57210.1|539517_540375_-|methylenetetrahydrofolate-dehydrogenase	unknown	unknown	gnl|CDD|236760
AP017372.2|BAU57202.1|532883_533243_+|SSU-ribosomal-protein-S6p	unknown	unknown	gnl|CDD|179034
AP017372.2|BAU57206.1|535154_536540_+|replicative-DNA-helicase	unknown	unknown	gnl|CDD|273206
AP017372.2|BAU57205.1|534522_534975_+|LSU-ribosomal-protein-L9p	unknown	unknown	gnl|CDD|234659
AP017372.2|BAU57201.1|531719_532502_+|23S-rRNA-(guanosine-2'-O-)--methyltransferase-rlmB	unknown	unknown	gnl|CDD|183021
AP017372.2|BAU57207.1|536536_537634_+|alanine-racemase	unknown	unknown	gnl|CDD|143500
AP017372.2|BAU57216.2|545377_546673_+|cell-division-trigger-factor	unknown	unknown	gnl|CDD|234956
AP017372.2|BAU57217.1|546695_547340_+|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl|CDD|178955
AP017372.2|BAU57211.1|541344_542148_+|3',5'-cyclic-nucleotide-phosphodiesterase	unknown	unknown	gnl|CDD|277347

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
AP017372.2|BAU57212.1|542204_542891_-|integral-membrane-protein	gnl|CDD|198415	cd10433, YccA_like, YccA-like proteins. A prokaryotic member of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	2.12638e-84
AP017372.2|BAU57203.1|533325_533550_+|SSU-ribosomal-protein-S18p	gnl|CDD|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	6.03802e-38
AP017372.2|BAU57219.1|548873_551336_+|ATP-dependent-protease-La-Type-I	gnl|CDD|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
AP017372.2|BAU57208.1|537707_539030_+|DNA-repair-protein-RadA	gnl|CDD|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
AP017372.2|BAU57218.1|547454_548738_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl|CDD|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
AP017372.2|BAU57214.1|543357_543828_-|flagellar-biosynthesis-protein-FliL	gnl|CDD|377123	pfam03748, FliL, Flagellar basal body-associated protein FliL. This FliL protein controls the rotational direction of the flagella during chemotaxis. FliL is a cytoplasmic membrane protein associated with the basal body.	5.83861e-28
AP017372.2|BAU57209.2|539069_539450_-|hypothetical-protein	gnl|CDD|377796	pfam07238, PilZ, PilZ domain. PilZ is a c-di-GMP binding domain which is found C terminal to pfam07317. Proteins which contain PilZ are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias. This domain forms a beta barrel structure.	6.48903e-10
AP017372.2|BAU57220.1|551639_551912_+|DNA-binding-protein-HU-beta	gnl|CDD|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	2.44588e-50
AP017372.2|BAU57213.2|543036_543243_-|hypothetical-protein	gnl|CDD|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	2.20286e-05
AP017372.2|BAU57210.1|539517_540375_-|methylenetetrahydrofolate-dehydrogenase	gnl|CDD|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
AP017372.2|BAU57202.1|532883_533243_+|SSU-ribosomal-protein-S6p	gnl|CDD|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	2.68473e-49
AP017372.2|BAU57206.1|535154_536540_+|replicative-DNA-helicase	gnl|CDD|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
AP017372.2|BAU57205.1|534522_534975_+|LSU-ribosomal-protein-L9p	gnl|CDD|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	3.11348e-64
AP017372.2|BAU57201.1|531719_532502_+|23S-rRNA-(guanosine-2'-O-)--methyltransferase-rlmB	gnl|CDD|183021	PRK11181, PRK11181, 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB.	1.01979e-90
AP017372.2|BAU57207.1|536536_537634_+|alanine-racemase	gnl|CDD|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
AP017372.2|BAU57216.2|545377_546673_+|cell-division-trigger-factor	gnl|CDD|234956	PRK01490, tig, trigger factor; Provisional.	2.54467e-158
AP017372.2|BAU57217.1|546695_547340_+|ATP-dependent-Clp-protease-proteolytic-subunit	gnl|CDD|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	1.74391e-151
AP017372.2|BAU57211.1|541344_542148_+|3',5'-cyclic-nucleotide-phosphodiesterase	gnl|CDD|277347	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	5.70705e-69

Protein sequences

>AP017372.2|BAU57210.1|539517_540375_-|methylenetetrahydrofolate-dehydrogenase
MPAQILDGKAIAAERRSMVARSVDERSAQGKRPPGLAVILVGSDPASAVYVRNKRRACDEAGLLSRSYDLPAETSEAELLQQIDQLNADEQIDGILVQLPLPGHINAQTVIERIDPQKDVDGFHPENMGRLITRLPGLRPCTPHGVMTLLEHTGVDLAGLDAVVIGQSNIVGRPMALELLNARCTITICHSRTKDLAARVNAADLVVASVGSPGLVRGDWIARGAIVIDVGINRRADGKLTGDVDFDEACEKASWITPVPGGVGPMTVATLLENTLEAAKLREQI
>AP017372.2|BAU57209.2|539069_539450_-|hypothetical-protein
MSANERRHFSRVEFQAPAQLATQAGSVHDVEILDISMRGALVRLSSGTLPPIELCSEGNRFTLKISLSEIDTIEMEVEAAHCHEHEIGLRCVRIDLDSIMHLRSLIEANLGDPDLVNRELANLIED
>AP017372.2|BAU57208.1|537707_539030_+|DNA-repair-protein-RadA
MGQCPECGEWNTLEEHIEPARNVAANPVTAARSPGLAASAGEVSALAEVSTAPEPRLSTSVDELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQTLAALSRHYPSLYATGEESLQQVALRARRLGVADAPLQLMAETSVETILATAQQLRPEALVIDSIQTVHSAALSSAPGSVSQVRDSAAQLVRWAKETGTALILVGHVTKEGAIAGPRVLEHMVDTVLYFESDQGSRYRLLRAVKNRFGAANELGLFAMTEDGLRQVRNPSAIFLSRHECAVSGSAIVVSREGSRPLLLEVQALVADSSLAQPRRVAVGIEQSRLSLLLAVLQRHGGVVTAGEDVFINVVGGVRIHETAGDLPVLAAVLSSMRNRPLPMNSVLFGELGLAGEVRPVPGGEERLAEAAKHGFTLAVVPEKNAPRKGIKGMEIHPVRRLEQAFEVLFSN
>AP017372.2|BAU57207.1|536536_537634_+|alanine-racemase
MSREACALIDLDAVRDNLRVARAVAARSRVMAVIKSDGYGHGLVRVAQAIGEDVDAFAVTDLDEALALRRAGFNQRIVLLQGPFEAAEIPLAAAEQLELVIHSAWQIEAIEQAQVSAALQLWLKVDTGMHRLGFQADEVAAAWRRLTAIPAHTVNPEIGFMTHLACADDRDDTMTDRQIEAFEEACKDFGGPLSAANSAGLLGWLESHFDWVRPGIMLYGVSPFSDRQPLDFPLRPAMTLRGRIIAVKHLGAGQKVGYGATWSCPEDMPIGIVSIGYGDGYPRHAMHGTPVDVAGRRASLVGRISMDMLAVDLRGMVTLPAPGDPVTLWGEQPRPESVADSAGTIAYELFCRTPSRVRRVYLDDQ
>AP017372.2|BAU57206.1|535154_536540_+|replicative-DNA-helicase
MQHDGAATNAESLKVPPHDLEAEQAVLGGLMLDNSAWDQIADRLHEEDFYRREHRLVYRAMAELADGGQPMDVVTLSGRLRQQGRLDDAGGLQYLGGISRETPSAANIRAYADIVRERSVLRQLIRAGSDVAAAAFEPQGRDSETLLDYAEQTIFAIAEQTGRHRQGFVGMRELMPQVIDRIDALYRTQEAVTGLPTGFDDLDHLTSGLQNGDLVIVAGRPSMGKTTFAMNIVEHVVMHRKLPVAVFSMEMPAEALAMRMLASLGRVHLQRVRSGRLQDDDWPRLTSTMSLLAEAPLFVDDSPGLSPTDVRARSRRLQREHDGLGLIVVDYLQLMQSSGLRENRAGELSEISRGLKALAKELNAPVIALSQLNRSLEQRPNKRPIMSDLRESGAIEQDADLIAFIYRDEVYHEDSPDKGVAELIIGKQRQGPIGTVRLTFLGEYTRFENFAEDIYGGGIPG
>AP017372.2|BAU57205.1|534522_534975_+|LSU-ribosomal-protein-L9p
MELILLEKVANLGDLGDRVRVRPGFGRNYLLPYGKAKPATAENIRYFEERRAELEKQAREALEAAQSRLEKLQATPLTIKAKSGEQGKLFGSVAPGDIAAAAEQAGVELAKREVRMPDGPIRVTGEYDVQVQLHTDVVGAVRVVVEGQEP
>AP017372.2|BAU57204.1|533562_534447_+|hypothetical-protein
MKAFAAFILRGPFQAATVMIAASLLPFLAVIAMGVLSLVTLRQGLQQGLFAAALAGGMLAALLWAMAGTYEPALRIVIEQWLPVLVLAEVLRRTVSLPLTLFVWAGLGALTVAGFHVVVDDPMAHWLAVTEQFLAATGAEQLPEETEAFLREDLLPIMTGLWVVNLMSVVLIGLLLGRWVQAIMFNPGGLREEFYRLDLGRSAAFVALVVLLAAVFSGPGPIYDLALVLAAAFIVQALAATHALMGKRNWSAAWLVPVYLVIPFLYMPMALLGIGEALFQWRRRLLGDGSGGAA
>AP017372.2|BAU57203.1|533325_533550_+|SSU-ribosomal-protein-S18p
MGRFFRRRKYCKFTAEGVKEIDYKDLNTLKNYITDTGKIVPSRITGTNARYQRQLSRAIKRARYLALLPYTDRH
>AP017372.2|BAU57202.1|532883_533243_+|SSU-ribosomal-protein-S6p
MRHYEIVFMVHPDQSDQVPAMLERYRSIVESNGGTIHRLEDWGRRQLAYPINKLIKAHYVLMNVECGQEELDELTSAFRFNDAVIRNMVLARDEAVTEPSPLLKGGEKREERRDYAEEE
>AP017372.2|BAU57201.1|531719_532502_+|23S-rRNA-(guanosine-2'-O-)--methyltransferase-rlmB
MANRLGSEAEERAKSHSLIYGRHPVREAATYDPAGVVAIWVDQALRRDPKLERLFNKLKKQGVTFYRVKRRELDEMVGGANHQGVVLSYRGAAVRGEAELNDLLDSARDPLLLVLDRVQDPHNLGACLRSAAAAGAAGVVAPRDHAASLSPAVHKVAAGAVQSVPFFQVTNLARALANMQQAGLVTIGAAGDGAQTLYSLELRGAIALVMGGESEGLRRLTRKNCDYVAAIPMPGSIESLNVAVAAGVVLFEAVRQRSNC
>AP017372.2|BAU57211.1|541344_542148_+|3',5'-cyclic-nucleotide-phosphodiesterase
MLCPDEPLRVLHISDLHLGDDPQWSYQGVRPWERLTEALIGVDPDCLGAQGLSRAPFDLVVVTGDLAHDQGESVYAKLSEQLAALKVPVLVLPGNHDDPEGFQRIFTDSGQVSYCREYFAGGWRILCLNSQVPGQITGRLGGQQLNALEQDLQQNQDLPTLIALHHAPVEVGTPWLDVQRLEDGESFLELVERYPQVRGVVFGHVHQDFAERRQSGLRLLAAPAVSIQFEPGSAVFAVEPSPPGVRWLELCSNGSLQSEVWWLEGCD
>AP017372.2|BAU57212.1|542204_542891_-|integral-membrane-protein
MSEQYSNSRAATATGREQAQQQALATNRLIRNTYILLAITLAFSAVTAGIAVLTDAPRLNIFVVLGGFFGLLFLTQYLRNSAWGLASIFALTGFMGYTLGPVINLYLGLPNGGETVMMAFGGTAAIFLGLSGYALASRRDFSFMRGFLFAGILVAFVAAIAAYFLQMPGLSLAVSVMFMILMSGLILYQTSEMVNGGETNYIMATITLYIAIYNLFTSLLHLLGLAND
>AP017372.2|BAU57213.2|543036_543243_-|hypothetical-protein
MVKGMADEESPSTQQHGSLLSSSHNRHNSYEHKIEAIRDLIEDDPERAVAVIKLWLEGTQNSGKEEKS
>AP017372.2|BAU57214.1|543357_543828_-|flagellar-biosynthesis-protein-FliL
MPKSIYVLLTAATVLLTITLGFVLAIATGWITPPGMQQYDSDPASTEVDYDDAQYVELEPSLTVNFGDGERLRYLEADVQVQTSQDEVVEALERHSAAIRDELIMLFSEQSPEDLNDVEGREELRNRSEEIINGILEKRGVEGRIDDVFFTEFVMQ
>AP017372.2|BAU57215.1|543860_545045_-|hypothetical-protein
MTLFAIVVLILLLALREVCSNRIRRLSHAQPHSTRRWRIARSWHTFALGLAAAAFLPTFVQQPELPILSEAHSLLSHTWPLFLIASGASVGLAIRIVNPQIKREIRRRQASIERRNRAQYGMNPERLSRGLRMWILDHGPAFDYRFDVETPDGVGNIVIGAEEGNFMIYVLPAEHAREGYATALQRSSKIAEHLDARGIVWIPDDKIKKAQTGDEHLAFVMRGSIVEVFRWIERTNEARRRNRERQEQRRNRALRSAQGEGIQWGSITEAEAMKKHDREAWERFARKTPIHPDMRDRVYRRHGARCAYCGFTMDPGRGQWEVIVSDYDHICRYPAKTRLVPYGIKPATSYEMPDCEQCHIEAPGHFEACISRLAPIHTRCKRERQEGKQDTAAD
>AP017372.2|BAU57216.2|545377_546673_+|cell-division-trigger-factor
MQVSIETTEGLGRRMTVQVPAERVEQEIERRLKDMAGRMKMDGFRPGKVPVKMVRKQYGEHVRQEVVNELLRQTYSDALKEQDLRPAGAPQVTPKQDESGQDLIYEASFEVLPQIEITGIEQIKVERPQVEVTDADVDNVLDRLRQQHADYEEVDRPAAQGDRVEIDFHGTVDGEEFQGNKAEDAAIIIGAGQLPEDFEQALVGAAAGTELTVEHTFPQGGDSPVAGKTAAFQVSVKRVEQANLPELDDAFAARLGVESGLNDLRDAVRANLENERDQAVRQRVKRQVMDQLAELNPVELPKSLIDGEIQALREQSGGASEGGMPETERDAYEEIARRRVQLGLLVNELVRSQQIQLDKERMMRELRQMAAQSGQDPNEALQQYAQNRRMMESLEASIIEEQAVDWLLEQVQTEERGMSFDELLNRDGNVS
>AP017372.2|BAU57217.1|546695_547340_+|ATP-dependent-Clp-protease-proteolytic-subunit
MSVEQHSSAPDIYNTGLVPMVVEQSPRGERAYDIFSRLLKERVIFLVGPVEDYQANLLVAQLLFLESENPDKDVHLYINSPGGSVTAGLAIYDTMQFIKPDVATLCVGQAASMGALLLAAGAEGKRYALPNSRMMIHQPLGGFQGQATDIDIHAREILSMRERLNAILSRHTGQDIETIRNDTDRDNFMTAEAAANYGLVDKVLESRTSSGKPA
>AP017372.2|BAU57218.1|547454_548738_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MSDRKQGKGEDSGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREELQESAEAEGEGLPKPHEINRALDEYVVGQEHAKKVLSVAVYNHYKRLEGHVDRDEVELTKSNILLIGPTGSGKTLLAETMARLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQHGIVYIDEIDKVSRKADNPSITRDVSGEGVQQALLKLIEGTTASVPPQGGRKHPQQEFVQVDTTNILFVCGGAFAGLDKVIRERSEKGGIGFSAEIKGEKERASVGDTLRTVEPSDLVNYGLIPEFVGRLPVVATLDELDEEALVEILKEPKNALVKQYRKLFEMEGVELDLRDDALRAVANKAMERKTGARGLRTIIEQVLLETMYELPSMDNVSKVVVDESVIKGENQPYIVYATPECTKAASSDE
>AP017372.2|BAU57219.1|548873_551336_+|ATP-dependent-protease-La-Type-I
MVSKAQSPQQTQSENHTQAQAPLLPLRDVVVYPHMVIPLFVGRERSINALESAMESDKRIFLVAQRNAEVDEPAGGDLYSYGTVATILQMLKLPDGTVKVLVEGGERAQLVELLESDDYLAAKLSAVAEPESDPEDRELEVLARSAMSHFEQYVKLNKKIPPEILSSLAGIEEPGRLADTIAAHMALKVEEKQAILEMEKPSQRLEHLMGLIESEIDVLQLEKRIRGRVKQQMEKSQREYYLNEQMKAIQKELGELEDVPNEVEELERKIEESGMPQQALDKSRQELNKLKMMSPMSAEATVVRNYLDWIVSLPWKEKSRVRLDMKRAQKVLDEDHYGLDKVKERILEYLAVQRRVRKLKGPILCLVGPPGVGKTSLGQSIARATNRKFSRMSLGGVRDEAEIRGHRRTYIGSLPGKIVQNLSKVGKRNPLFLLDEVDKMAMDFRGDPASALLEVLDPEQNYSFNDHYLEVDFDLSDVMFVCTANTMNIPEPLLDRMEVIRLPGYTEQEKVAITKRHLLPKQMKANGLRKGELDLKDSAMRDIIRHYTREAGVRNLEREVATICRKVVKGLVEDEAKKRQSKGVQVTSRNLDKYLGVRRYRYGRAESEDRVGLATGLAWTEVGGELLTIEVAVVPGKGKATHTGQLGEVMKESIDAAMTVVRSRARTLGIQPEFYAQHDYHIHVPEGAIPKDGPSAGIGMCVALVSSLTGIPVRASVGMTGEITLRGEVLPIGGLKEKLLAALRGGIETVLIPAENEKDLADVPKEVKSKLDIRCVRWIDEVFDVALLQRPEPLAEESVSDEDETSQRSKVSENGSVRPH
>AP017372.2|BAU57220.1|551639_551912_+|DNA-binding-protein-HU-beta
MNKSELIEAVADSADLSKAAASRAVDAMVESITDALKEGDQVTLVGFGTFSVRERAARTGRNPQTGETIEIPASKVPGFKPGKALKDAVN

Crispr_ID: AP017372_4

• CRISPR_ID: AP017372_4
• CRISPR_location: 760082-760660
• CRISPR_type: TypeI-E
• Repeat_type: I-E
• Spacer_info: 9 spacers
• Cas_protein_info: cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

Consensus repeat of AP017372_4

Consensus_repeat	Method
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CRISPRCasFinder
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CRT
GCGTTCCCCGCGCCTGCGGGGATGAACCG	PILER-CR

spacers of AP017372_4

>4.1|760111|32|AP017372|CRISPRCasFinder,CRT
CAGCGACAATTAACCGGCATTCCTGGCAAAAT
>4.2|760172|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
CTCCGACGCTGCTCTCCTCAGCTTCGGCTTGG
>4.3|760233|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
GTAAGTACCCCGACGCGGAGCCGTCGCACTAC
>4.4|760294|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
CGCGCTAATGCACTGCTGGATTTGCAAACTGA
>4.5|760355|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
GAGCTTAGACGATGTGATGCGCGCTAATGCGC
>4.6|760416|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
CGCGTCTTTAGCCGCCGCCTCTGCGCCTTCTT
>4.7|760477|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
TCTCGGCTAACGTTTTCCTCATGCCTCGATCG
>4.8|760538|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
AGCGGCACGTTTACCATGCCCGAAGATGAAAT
>4.9|760599|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
CAATCTTAGCACTGTCAAGATCGACGGACTGG

CRISPR arrays and Neighbor proteins around AP017372_4

CRISPR arrays

The CRISPR arrays of AP017372_4

>merge|AP017372|4|760082-760660|CRISPRCasFinder,CRT,PILER-CR
GCGTTCCCCGCGCCTGCGGGGATGAACCGCAGCGACAATTAACCGGCATTCCTGGCAAAATGCGTTCCCCGCGCCTGCGGGGATGAACCGCTCCGACGCTGCTCTCCTCAGCTTCGGCTTGGGCGTTCCCCGCGCCTGCGGGGATGAACCGGTAAGTACCCCGACGCGGAGCCGTCGCACTACGCGTTCCCCGCGCCTGCGGGGATGAACCGCGCGCTAATGCACTGCTGGATTTGCAAACTGAGCGTTCCCCGCGCCTGCGGGGATGAACCGGAGCTTAGACGATGTGATGCGCGCTAATGCGCGCGTTCCCCGCGCCTGCGGGGATGAACCGCGCGTCTTTAGCCGCCGCCTCTGCGCCTTCTTGCGTTCCCCGCGCCTGCGGGGATGAACCGTCTCGGCTAACGTTTTCCTCATGCCTCGATCGGCGTTCCCCGCGCCTGCGGGGATGAACCGAGCGGCACGTTTACCATGCCCGAAGATGAAATGCGTTCCCCGCGCCTGCGGGGATGAACCGCAATCTTAGCACTGTCAAGATCGACGGACTGGGCGTTCCCCGCGCCTGCGGGGATGAACCGT

>AP017372|4|3|760082-760660|CRISPRCasFinder
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CAGCGACAATTAACCGGCATTCCTGGCAAAAT
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CTCCGACGCTGCTCTCCTCAGCTTCGGCTTGG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GTAAGTACCCCGACGCGGAGCCGTCGCACTAC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CGCGCTAATGCACTGCTGGATTTGCAAACTGA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GAGCTTAGACGATGTGATGCGCGCTAATGCGC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CGCGTCTTTAGCCGCCGCCTCTGCGCCTTCTT
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TCTCGGCTAACGTTTTCCTCATGCCTCGATCG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	AGCGGCACGTTTACCATGCCCGAAGATGAAAT
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CAATCTTAGCACTGTCAAGATCGACGGACTGG
GCGTTCCCCGCGCCTGCGGGGATGAACCGT

>AP017372|4|1|760082-760659|CRT
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CAGCGACAATTAACCGGCATTCCTGGCAAAAT
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CTCCGACGCTGCTCTCCTCAGCTTCGGCTTGG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GTAAGTACCCCGACGCGGAGCCGTCGCACTAC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CGCGCTAATGCACTGCTGGATTTGCAAACTGA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GAGCTTAGACGATGTGATGCGCGCTAATGCGC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CGCGTCTTTAGCCGCCGCCTCTGCGCCTTCTT
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TCTCGGCTAACGTTTTCCTCATGCCTCGATCG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	AGCGGCACGTTTACCATGCCCGAAGATGAAAT
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CAATCTTAGCACTGTCAAGATCGACGGACTGG
GCGTTCCCCGCGCCTGCGGGGATGAACCG

>AP017372|4|2|760143-760659|PILER-CR
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CTCCGACGCTGCTCTCCTCAGCTTCGGCTTGG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GTAAGTACCCCGACGCGGAGCCGTCGCACTAC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CGCGCTAATGCACTGCTGGATTTGCAAACTGA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GAGCTTAGACGATGTGATGCGCGCTAATGCGC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CGCGTCTTTAGCCGCCGCCTCTGCGCCTTCTT
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TCTCGGCTAACGTTTTCCTCATGCCTCGATCG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	AGCGGCACGTTTACCATGCCCGAAGATGAAAT
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CAATCTTAGCACTGTCAAGATCGACGGACTGG
GCGTTCCCCGCGCCTGCGGGGATGAACCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
AP017372.2|BAU57407.1|749927_750140_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU57426.2|767583_767928_+|hypothetical-protein	unknown	unknown	gnl|CDD|376684
AP017372.2|BAU57408.1|750180_750744_-|Cytidine-and-deoxycytidylate-deaminase-family-protein	unknown	unknown	gnl|CDD|238612
AP017372.2|BAU57415.2|758738_759665_+|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl|CDD|274693
AP017372.2|BAU57424.1|766204_767125_+|possible-multi-domain-protein	unknown	unknown	gnl|CDD|235264
AP017372.2|BAU57409.1|750875_753662_+|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|182031
AP017372.2|BAU57412.1|756247_757285_+|CRISPR-associated-protein	cas7	pfam09344_cas7_CAS-I-E	gnl|CDD|378153
AP017372.2|BBE11013.1|765019_765238_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU57410.1|753976_755617_+|CRISPR-associated-protein	cas8e	pfam09481_cas8e_CAS-I-E	gnl|CDD|187860
AP017372.2|BAU57413.2|757295_758033_+|CRISPR-associated-protein	cas5	cd09645_cas5_CAS-I-E	gnl|CDD|187886
AP017372.2|BAU57428.1|769427_769673_+|HigA-protein	unknown	unknown	gnl|CDD|274228
AP017372.2|BAU57423.2|765234_765834_-|mobile-element-protein	unknown	unknown	gnl|CDD|373239
AP017372.2|BAU57414.1|758032_758734_+|CRISPR-associated-protein	cas6e	cd09727_cas6e_CAS-I-E	gnl|CDD|187858
AP017372.2|BAU57417.2|760736_761147_-|mobile-element-protein	unknown	unknown	gnl|CDD|222853
AP017372.2|BAU57422.1|763849_764542_+|hypothetical-protein	unknown	unknown	gnl|CDD|372975
AP017372.2|BAU57411.1|755613_756222_+|CRISPR-associated-protein	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl|CDD|187862
AP017372.2|BAU57416.1|759667_759967_+|CRISPR-associated-protein	cas2	pfam09707_cas2_CAS-I-E	gnl|CDD|236930
AP017372.2|BBE11012.1|764624_765014_+|twitching-motility-protein-PilT	unknown	unknown	gnl|CDD|350221
AP017372.2|BAU57418.1|761572_761887_-|hypothetical-protein	unknown	unknown	gnl|CDD|225511
AP017372.2|BAU57427.1|767945_768938_+|putative-stomatin/prohibitin-family-membrane-protease-subunit-YbbK	unknown	unknown	gnl|CDD|223407

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
AP017372.2|BAU57416.1|759667_759967_+|CRISPR-associated-protein	cas2	pfam09707_cas2_CAS-I-E	6.8e-40	129.9	0.5
AP017372.2|BAU57414.1|758032_758734_+|CRISPR-associated-protein	cas6e	cd09727_cas6e_CAS-I-E	3.2e-54	178.9	0.1
AP017372.2|BAU57415.2|758738_759665_+|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	5.9e-115	377.7	0.0
AP017372.2|BAU57409.1|750875_753662_+|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	4.4e-77	254.7	0.0
AP017372.2|BAU57411.1|755613_756222_+|CRISPR-associated-protein	cse2gr11	cd09731_cse2gr11_CAS-I-E	3.5e-31	103.0	2.9
AP017372.2|BAU57412.1|756247_757285_+|CRISPR-associated-protein	cas7	pfam09344_cas7_CAS-I-E	4.5e-123	406.0	0.0
AP017372.2|BAU57413.2|757295_758033_+|CRISPR-associated-protein	cas5	cd09645_cas5_CAS-I-E	3.6e-55	181.3	0.2
AP017372.2|BAU57410.1|753976_755617_+|CRISPR-associated-protein	cas8e	pfam09481_cas8e_CAS-I-E	1.2e-134	444.5	4.4

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
AP017372.2|BAU57426.2|767583_767928_+|hypothetical-protein	gnl|CDD|376684	pfam01957, NfeD, NfeD-like C-terminal, partner-binding. NfeD-like proteins are widely distributed throughout prokaryotes and are frequently associated with genes encoding stomatin-like proteins (slipins). There appear to be three major groups: an ancestral group with only an N-terminal serine protease domain and this C-terminal beta sheet-rich domain which is structurally very similar to the OB-fold domain, associated with its neighboring slipin cluster; a second major group with an additional middle, membrane-spanning domain, associated in some species with eoslipin and in others with yqfA; a final 'artificial' group which unites truncated forms lacking the protease region and associated with their ancestral gene partner, either yqfA or eoslipin. This NefD, C-terminal, domain appears to be the major one for relating to the associated protein. NfeD homologs are clearly reliant on their conserved gene neighbor which is assumed to be necessary for function, either through direct physical interaction or by functioning in the same pathway, possibly involve with lipid-rafts.	3.33005e-11
AP017372.2|BAU57408.1|750180_750744_-|Cytidine-and-deoxycytidylate-deaminase-family-protein	gnl|CDD|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	2.86166e-31
AP017372.2|BAU57415.2|758738_759665_+|CRISPR-associated-protein-Cas1	gnl|CDD|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.98711e-150
AP017372.2|BAU57424.1|766204_767125_+|possible-multi-domain-protein	gnl|CDD|235264	PRK04247, PRK04247, endonuclease NucS.	9.04348e-07
AP017372.2|BAU57409.1|750875_753662_+|CRISPR-associated-helicase-Cas3	gnl|CDD|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	5.99445e-148
AP017372.2|BAU57418.1|761572_761887_-|hypothetical-protein	gnl|CDD|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.37274e-06
AP017372.2|BAU57410.1|753976_755617_+|CRISPR-associated-protein	gnl|CDD|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.53843e-141
AP017372.2|BAU57413.2|757295_758033_+|CRISPR-associated-protein	gnl|CDD|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.50536e-44
AP017372.2|BAU57428.1|769427_769673_+|HigA-protein	gnl|CDD|274228	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair. [Regulatory functions, DNA interactions, Regulatory functions, Protein interactions, Mobile and extrachromosomal element functions, Other].	1.42867e-25
AP017372.2|BAU57423.2|765234_765834_-|mobile-element-protein	gnl|CDD|373239	pfam14706, Tnp_DNA_bind, Transposase DNA-binding. This domain occurs at the C-terminus of transposases including E. coli tnpA. TnpA encodes a transposase and an inhibitor protein, the inhibitor only differs from the transposase by the absence of the N-terminal 55 amino acids, which includes most of this domain. This domain consists of alpha helices and turns, and functions as a DNA-binding domain.	2.95429e-18
AP017372.2|BAU57414.1|758032_758734_+|CRISPR-associated-protein	gnl|CDD|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.72361e-57
AP017372.2|BAU57417.2|760736_761147_-|mobile-element-protein	gnl|CDD|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.30074e-40
AP017372.2|BAU57422.1|763849_764542_+|hypothetical-protein	gnl|CDD|372975	pfam14236, DUF4338, Domain of unknown function (DUF4338). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 206 and 475 amino acids in length.	4.42393e-70
AP017372.2|BAU57411.1|755613_756222_+|CRISPR-associated-protein	gnl|CDD|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.0859e-23
AP017372.2|BAU57416.1|759667_759967_+|CRISPR-associated-protein	gnl|CDD|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	6.77901e-57
AP017372.2|BBE11012.1|764624_765014_+|twitching-motility-protein-PilT	gnl|CDD|350221	cd09873, PIN_Pae0151-like, VapC-like PIN domain of the Pyrobaculum aerophilum Pae0151 and Pae2754 proteins and homologs. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of the Pyrobaculum aerophilum proteins, Pae0151 and Pae2754, and homologs are included in this subfamily. They are similar to the PIN domains of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.68453e-27
AP017372.2|BAU57412.1|756247_757285_+|CRISPR-associated-protein	gnl|CDD|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.89345e-119
AP017372.2|BAU57427.1|767945_768938_+|putative-stomatin/prohibitin-family-membrane-protease-subunit-YbbK	gnl|CDD|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	2.26799e-59

Protein sequences

>AP017372.2|BAU57416.1|759667_759967_+|CRISPR-associated-protein
MAMLVVVTEAVPPRLRGRLAIWLLEVRAGVYVGDVNRRVREMIWEQVNALVEDGNVVMAWSSRHESGFEFQTCGKNRRVPVDYEGLRLVRFAPDPEAEG
>AP017372.2|BAU57415.2|758738_759665_+|CRISPR-associated-protein-Cas1
MTTEFVPLKPIPIKDRVSMIFVGRGQLDVRDGAFVVVDEVNGERMHIPVGSVACLLLEPGARISHAAVKLAATVGTLLIWVGEAGVRLYSAGQPGGARSDKLLYQARLALDEKLRLKVVRRMYALRFQEEPPERRSVEQLRGIEGARVRKMYKVLAQKYGVEWKGRSYDPNEWDNADPVNKCLSAATSCLYGVCEAAILAAGYAPAIGFLHTGKPQSFVYDVADIVKFETVVPAAFRVAAQNPAQPDRAVRIACRDSFRDTHVLQRLIPLIEDLLEAGGIDPPPPAPEAQPPAIPEPKSIGDHGHRSK
>AP017372.2|BAU57414.1|758032_758734_+|CRISPR-associated-protein
MFLSRVHINPQALTPKNLMPVLEGDSYRNHQLLWRLFTEEDERPFLFRQEFEHSFDSSSGKPRGLPLFYVLSRVEPQADSELFSCEVKSFEPKLSAGQQLAFKLRANPVVAKREEGRKNSRHHDVLMDAKRAAKDNGVTDKVAIRCYMDEAAQSWLANKGRSEKAGYTLQSAPEVSGYQQHVHRRKGRDIRFSSVDFQGILTVNDPERFAQSLAEGIGRSRAFGCGMWMVRRV
>AP017372.2|BAU57413.2|757295_758033_+|CRISPR-associated-protein
MNYLVFRLYGPLASWGEAAVGPTRPSASYPGRSAILGLLAAALGIRREEEATLAQLRDNVTLAVKQCSAGTLLRDYHTAQVPSHDKKAVWLTRRDELGVAKDKLNTILSAREYRSDGYWVVAIRLSDEAPWTLDEMAEALRHPRFMLYLGRKSCPLAAPLHPRVVSAGGVREALSEEFPGFTGSKMEDDEKRRLGIDAEVSFAWEGDAGDILPQETRYPYDEPLHRGRWQFASRSEHWHQTREES
>AP017372.2|BAU57412.1|756247_757285_+|CRISPR-associated-protein
MSTFIQLHLLTSYPPANLNRDDLGRPKTARMGGVDRLRVSSQSLKRTWRTSELFEDALVGHVGTRTKRLGTEVYEALTGAGIAEKKSLEWARAIANVFGKIQKSGTEIEQLAHLSPEERQGVDELVATLIQEQRAPTEDELKLLRKNPHAADIGLFGRMLAAHPAFNVEAACQVAHAITVHPVAVEDDYFTAVDDLNFGEEDMGAGHIGETGFAAGLFYSYVCINRDQLIDNLSGDVELADKAIAALTEAAVKVSPKGKQNSFGSRAYASYVLVEKGRQQPRSLSVAFLKPVYGQDQAGTAIKALEGQRESFEKVYGPCAEGHYVLNAVAGEGSLDELKAFLVQN
>AP017372.2|BAU57411.1|755613_756222_+|CRISPR-associated-protein
MSRSNINYQVLREAEARSSVYQWWQRVSRAVEADGEGGLPAFSTAVRPALRRAKTPDDALLTEGFRLLWFAVPDNLKAPRNMPALGCVAAVLAEVREMDQQKSFAAAMGSQVEKTGKPRVSELRFQQLQQSHDLEELQRRLRRAVALLGKKVHVLSLADNIMQWHREKSGHPDYRPDRRLPVRWATDYFTELASYQKAAATN
>AP017372.2|BAU57410.1|753976_755617_+|CRISPR-associated-protein
MNLIDEPWLPFRLRSGAIEYGPPCELAREDVVDLAPPRADFHGAAWQFLIGLLQTTCPPDDLEEWQAWWADPPTAEQLQEHFARVRHAFNAFGDAPLFMQELDPMEDARSASVASLLIEAPGDQGIKFNTDHFIKRGFGEAMCPRCASLALFTMQVNAPAGGSGYRTGLRGGGPLTTLVLPDDSQAPLWQKLWLNVLNADDLGGGEPDFTDGSVFPWLAATRVSKQAGTEITPEEVHPLHAYWAMPRRFRMHKEEAECRCQVCGAETTEVVREVRAKNYGHNYGGAWVHPLTPYRQDPKKPDEPPLSTKGQQGGLGYRHWEALVLEDTRNHQNLPARVVLDYQEKAEALRDFGSVSQHARLWVFGYDMDNMKARGWYATYMPLLAIPKEQGLRDRFLEWIDAMVQAASDAAWLLRSTVKSAWYSRPKDASGDFSFIDQRFWEGTESAFYSHLHQLAERLPEQDGAFMPEDVARRWHMTLYETALELFDELSLAGDAEALDMKRIVAARNELGKRLWRNKTMKTLRTWAGMEEGVGKSKDKAAKEEA
>AP017372.2|BAU57409.1|750875_753662_+|CRISPR-associated-helicase-Cas3
MESLPAYFRYWAKIPKERGFGWDACHLLPYHALDVAATGKYLLDSDEELLERFSAAVQMAPDVFRRLLVFSLALHDLGKFARSFQSLAAIDGVDLVEPDPRYVYRSRHDALALAYWKHYGQECLRNPETGNEWLDAPSELTGRQSLAFWLSVAFGHHGKPVDMEKAALDLAFSPEDKAAAWGFVEDAAALLEPSFPHAQLSDKHWRDHVLKPASWELAGFGVLADWLGSDQSVFGHRAESMPLATYWHEYALPGAEQVVERSGLRGHKEMVAFPGFSQMFGFEPAPLQSWAESVPLADGPQLFLLEDITGAGKTEAALTLAHRLLAAGHRNGVYFALPTQATSNAMYTRVGAVYRDFYSRDSQPSLVLAHGARQLRDDFTRSILPEMAPDTPYTPDDEGGLAQCSQWLADSRKKALLADVGVGTVDQALLGVLPRRHQSLRLLGLARKVLVVDEVHAYDTYTGTLLERLLEAHARHGGSAILLSATIPQSMRRRFLEAWQRGREGGQALQPASEAFPLATHLYSEGLDETPVAARTSSERDLPVDFVHSEEEALSRVVEAARSGRCACWIRNTVDDAIGAYQALRESLPEPDKALLFHARFTMGDRQRIENDALRLFGKESGNAERAGRVLIATQVVEQSLDLDFDVLVSDLAPVELLIQRAGRLYRHARTPDGDLLLSGTDQRESPVFHVHAPEWNDEPDAEWVRRALIGTSYVYPDFGMLWLTMRVLRERGAIRLPAEARLLLEAVYAPEVDVPEGLQRASDEALAEQLSHRSMAGFNVLDLSKGYSGKSVEGGWSDDEEIGTRLSDEPSVQVVLVRVDENQRVKPWNSDTAHPWAMSTVQLRKSQADRLPSLPEELGHEIELLREEVRSLRYARFWLPADERAANHAAYDSLLGAVIPRKGGEQEASTVGTVPHSGSSSNENEEH
>AP017372.2|BAU57408.1|750180_750744_-|Cytidine-and-deoxycytidylate-deaminase-family-protein
MYIPEFNITLPGWLHEMLSGELQQLPGDEAQMRFVISLAIENIRQESGGPFAAAVFDSSGNLLAPGLNLVTSLHCSILHAEIIALALAQQRIGSHDLSDAGRSHHTLVTSAEPCAMCLGAIPWSGVSRVVFGALDADVREIGFDEGTKPDHWKEALATRGIEVRGEVLRSEAARLLQAYSEKGGPLY
>AP017372.2|BAU57407.1|749927_750140_+|hypothetical-protein
MFVFTLAIIIMAALALLSGIAILFYSRSGNSTSSGREFSMAVFFVSALNFVSNSLVFGVVLGVNAMVGFY
>AP017372.2|BAU57417.2|760736_761147_-|mobile-element-protein
MAAVMDLYNRQIVGWAIANNMRVELTLDALEMAIERCNPEPGLVHHSDRGSQYASTIYQDRLRQEGMIASMSRKGNCWDNAVMERFFGSLKSEWTDHCRYQGFHDASKDIAQFIEWEYNAGRGHTSLEGLAPAEVC
>AP017372.2|BAU57418.1|761572_761887_-|hypothetical-protein
MKSKSPKKYSQQYKTMAVNMHREQGYTKTEVARRLDLTRGMIYRWERELYPEEFQNNSTNHGQARKPSAELEEENRRLREENRKLQEERAILKKAAAFFANEQN
>AP017372.2|BAU57422.1|763849_764542_+|hypothetical-protein
MLRLHEQGKITLPPSRLRKRRRRATFPPTPATDPQPLLNTPVNMMPKPTFHIVQGNAAQSRCWNEYIARYHYLGYTPLDGHQIRYNVYAGEQLVALLGFGASAWKLADRERFIGWSSEQRERNLSLVVNNTRFLILPWVQVRGLASKILGLAARQLPLDWQQRYGFQPVLLETFVEWPRHTGTCYKAANWQWVGRTTGRGKKSTSHKQRLPTKDIWLYPLRRDFANRLCS
>AP017372.2|BBE11012.1|764624_765014_+|twitching-motility-protein-PilT
MDIVADTNIFLAVALNEPDRDRIITLTADASALAPEILPYEIGNALSAMVKRRQLSYSEALEAEKSVRRIPVRLVSTDIRSSLQLALDQDIYAYDAYFLQCAQALSCPLLTLDRRMRQVARELGIRVLE
>AP017372.2|BBE11013.1|765019_765238_+|hypothetical-protein
MKVFTYSEARQNLSKLLVLAQREEVEIRRKDGSTFSLRAKPRESKSPFDVPGVSTTATTSDILEAVRESRES
>AP017372.2|BAU57423.2|765234_765834_-|mobile-element-protein
MFLNPPPNMYGFWQPTTAELPIDDWARHEFAHARCGDRRLQERLITVARDFAAHSQADTPEACGTRARTKAAYRFLANPRASMQQLIRSHAQASAGRCRHHDVVLAVQDTTTLNYSAPTITEGLGPIGSRADGAQGLIVHDTMAFSTEGTPLGLIDVYAWARHCEDRGLRRLSGDCYLPYRSNVANQPREERASAEWPC
>AP017372.2|BAU57424.1|766204_767125_+|possible-multi-domain-protein
MPRYWVIAPIDSQPADFFEKVWRFDIEKEVISIGWSQFGDVSGMSRDELAKVVAHHYPEKPQQTKGLITNMVWSFCHKIEPGDVVIARRGRKILAAVGTVREKAFYKAGKNPDVDHRLFLPVTWHQEPRDKDFGAVVFPMPTLAEIDETQYQSLVEGSGLEVAKSEDGETYENQAEFVLEKYLEEFIVSNFSGIFKGELEVYVDEDGNTGQQYTTDIGSIDILAEDRRNNSLVVIELKKGRPSDQVVGQIMRYMGWVKKNLALEDQKVRGLVICRGEDQRLSYALEMVDHVDIRYYKVSFSLTERP
>AP017372.2|BAU57426.2|767583_767928_+|hypothetical-protein
MAGMALFGMGAALLGLSWEFQILSAALSGVLLIPLALKALKKLTPGELSQSLDDPRLRGQQFKVYTDSGGQARVTVFGDEFMARPSSIDQSLKDGSLVRIVRFEGNTAIVTPND
>AP017372.2|BAU57427.1|767945_768938_+|putative-stomatin/prohibitin-family-membrane-protease-subunit-YbbK
MNSDVPIPEITTLLIVLLAVLLIIIIIKGLVIVPQRHAMVIERLGRYHRTLNAGLNLIIPILDQPRPITIVRYRDNQKTINTEKKIDLREVVLDFPKQEVITKDNVGVRIDGVLYYQIMDAQAAIYGAENLVLAVQTLAQTSLRSEIGRMELDQIFESRQEINARLQNTMDDAGNKWGVKVNRVEIRDIDIPDDIREAMNKQMAAERARRAEVREAEGYKQAEILKAEGDKEAAVQRAEGEKRAIQQILEAAAGTEGLEARDAMRYLIAQEYMETLPKVAQEGERVFIPLEATSLMGSVGGIRELLGPTTGAAAASSSSSSGAGSGGSGG
>AP017372.2|BAU57428.1|769427_769673_+|HigA-protein
MQITQRELADAIHVPYQRVNELVNQKRGITPSTALRLARFFGVSADFWLNLQVRWDLYKTQQVEKDELAEIQDVTHWQKMA

Crispr_ID: AP017372_5

• CRISPR_ID: AP017372_5
• CRISPR_location: 761958-763756
• CRISPR_type: TypeI-E
• Repeat_type: I-E
• Spacer_info: 29 spacers
• Cas_protein_info: cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

Consensus repeat of AP017372_5

Consensus_repeat	Method
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CRISPRCasFinder
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CRT
GCGTTCCCCGCGCCTGCGGGGATGAACC	PILER-CR
GCGTTCCCCGCGCCTGCGGGGATGAACCG	PILER-CR

spacers of AP017372_5

>5.1|761987|32|AP017372|CRISPRCasFinder,CRT
CGGACTCGACCTCCTCCATCGAGCCGTAACTC
>5.2|762048|32|AP017372|CRISPRCasFinder,CRT
GTATGAGCGACAGCAATCTTAGCACTGTCAAA
>5.3|762109|32|AP017372|CRISPRCasFinder,CRT
GCACAGACGACTACTGAATCTTACGGTTTCCA
>5.4|762170|32|AP017372|CRISPRCasFinder,CRT
ATAATGCAAGACATGCTAACCGATGCAAATCC
>5.5|762231|32|AP017372|CRISPRCasFinder,CRT
ATATCCTTAACGCCCTCCGAGACTACTAACCA
>5.6|762292|32|AP017372|CRISPRCasFinder,CRT
GTCGGGGCTGTCTTAGTGAGGCCCGACCGGAC
>5.7|762353|32|AP017372|CRISPRCasFinder,CRT
TACCCTCATCTTCCGATGAGACTAACATATCC
>5.8|762414|32|AP017372|CRISPRCasFinder,CRT
GACGACGAAACCATTCGCGCTAGCGAAGAATA
>5.9|762475|32|AP017372|CRISPRCasFinder,CRT
AGTTGGGTGCTGAGCTTGTCCCTGCAATGCTT
>5.10|762536|32|AP017372|CRISPRCasFinder,CRT
CGTTCAGCTGCTCGCGGACACGCTCTTCGTCA
>5.11|762597|32|AP017372|CRISPRCasFinder,CRT
CTGCCCATGGAATATGAGCCGGATCGCCATTG
>5.12|762658|32|AP017372|CRISPRCasFinder,CRT
TCCCGCGTCTATACCGACAAGAGTTTGGGCGC
>5.13|762719|32|AP017372|CRISPRCasFinder,CRT
TTTGCCGCGGAACACCCTGAAGCCACGCCAGA
>5.14|762780|32|AP017372|CRISPRCasFinder,CRT
ATAACCGGCGGCGGTGAGCCGTCAGATGAGTG
>5.15|762841|32|AP017372|CRISPRCasFinder,CRT
AGTTTAGACCCGAGCGAGTACGGACAGCAGGC
>5.16|762902|32|AP017372|CRISPRCasFinder,CRT
GTTGAGTTGCAAACCACCGACCTGCCTACAGA
>5.17|762963|33|AP017372|CRISPRCasFinder,CRT
TTCGCCGGTAGAAAGCTGATTTTCAAGCGCGAC
>5.18|763025|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
TATCACTGGTTGTACGGCGCACCGCTGCTTGC
>5.19|763086|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
ATTACGGCACGGGGCGATCAGGGAAACGGGTC
>5.20|763147|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
GCGCAACAGTTCATCACCGTATGACGTGTACG
>5.21|763208|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
CCCTGGCGCCCGGACGATGCCCGTGTCTATCA
>5.22|763269|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
ATGAACCGATCACCAGCCTTGTCCCACGGCAA
>5.23|763330|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
TCCTTGAGTCTTTGTGGAGATACACTAATGGA
>5.24|763391|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
GCGATGGAGCTGTTTGGCGCGCGCTACTTTAG
>5.25|763452|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
GGCCGATGGCAAGTGCGGATAGAGGATTTGAG
>5.26|763513|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
AAAGGCTGGTTAGGTGGCATCAGAGCCATTAA
>5.27|763574|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
TCCGGTAGGGGCATAGGACGTAAAGCGAACCC
>5.28|763635|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
TGTTCAGCACAGCCTTGTTGCTTGAACTCTCG
>5.29|763696|32|AP017372|CRISPRCasFinder,CRT,PILER-CR
TCATCGGTAGTCATTAAATCTGCTACTCGTAT
>5.30|762169|33|AP017372|PILER-CR
GATAATGCAAGACATGCTAACCGATGCAAATCC
>5.31|762230|33|AP017372|PILER-CR
GATATCCTTAACGCCCTCCGAGACTACTAACCA
>5.32|762291|33|AP017372|PILER-CR
GGTCGGGGCTGTCTTAGTGAGGCCCGACCGGAC
>5.33|762352|33|AP017372|PILER-CR
GTACCCTCATCTTCCGATGAGACTAACATATCC
>5.34|762413|33|AP017372|PILER-CR
GGACGACGAAACCATTCGCGCTAGCGAAGAATA
>5.35|762474|33|AP017372|PILER-CR
GAGTTGGGTGCTGAGCTTGTCCCTGCAATGCTT
>5.36|762535|33|AP017372|PILER-CR
GCGTTCAGCTGCTCGCGGACACGCTCTTCGTCA
>5.37|762596|33|AP017372|PILER-CR
GCTGCCCATGGAATATGAGCCGGATCGCCATTG
>5.38|762657|33|AP017372|PILER-CR
ATCCCGCGTCTATACCGACAAGAGTTTGGGCGC
>5.39|762718|33|AP017372|PILER-CR
GTTTGCCGCGGAACACCCTGAAGCCACGCCAGA
>5.40|762779|33|AP017372|PILER-CR
GATAACCGGCGGCGGTGAGCCGTCAGATGAGTG
>5.41|762840|33|AP017372|PILER-CR
GAGTTTAGACCCGAGCGAGTACGGACAGCAGGC

CRISPR arrays and Neighbor proteins around AP017372_5

CRISPR arrays

The CRISPR arrays of AP017372_5

>merge|AP017372|5|761958-763756|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GCGTTCCCCGCGCCTGCGGGGATGAACCTCGGACTCGACCTCCTCCATCGAGCCGTAACTCGCGTTCCCCGCGCCTGCGGGGATGAACCGGTATGAGCGACAGCAATCTTAGCACTGTCAAAGCGTTCCCCGCGCCTGCGGGGATGAACCGGCACAGACGACTACTGAATCTTACGGTTTCCAGCGTTCCCCGCGCCTGCGGGGATGAACCGATAATGCAAGACATGCTAACCGATGCAAATCCGCGTTCCTCGCGCCTGCGGGGATGAACCGATATCCTTAACGCCCTCCGAGACTACTAACCAGCGTTCCCCGCGCCTGCGGGGATGAACCGGTCGGGGCTGTCTTAGTGAGGCCCGACCGGACGCGTTCCCCGCGCCTGCGGGGATGAACCGTACCCTCATCTTCCGATGAGACTAACATATCCGCGTTCCCCGCGCCTGCGGGGATGAACCGGACGACGAAACCATTCGCGCTAGCGAAGAATAGCGTTCCCCGCGCCTGCGGGGATGAACCGAGTTGGGTGCTGAGCTTGTCCCTGCAATGCTTGCGTTCCCCGCGCCTGCGGGGATGAACCGCGTTCAGCTGCTCGCGGACACGCTCTTCGTCAGCGTTCCCCGCGCCTGCGGGGATGAACCGCTGCCCATGGAATATGAGCCGGATCGCCATTGGCGTTCCCCGCGCCTGCGGGGATGAACCATCCCGCGTCTATACCGACAAGAGTTTGGGCGCGCGTTCCCCGCGCCTGCGGGGATGAACCGTTTGCCGCGGAACACCCTGAAGCCACGCCAGAGCGTTCCCCGCGCCTGCGGGGATGAACCGATAACCGGCGGCGGTGAGCCGTCAGATGAGTGGCGTTCCCCGCGCCTGCGGGGATGAACCGAGTTTAGACCCGAGCGAGTACGGACAGCAGGCGCGTTCCCCGCGCCTGCGGGGATGAACCGGTTGAGTTGCAAACCACCGACCTGCCTACAGAGCGTTCCCCGCGCCTGCGGGGATGAACCGTTCGCCGGTAGAAAGCTGATTTTCAAGCGCGACGCGTTCCCCGCGCCTGCGGGGATGAACCGTATCACTGGTTGTACGGCGCACCGCTGCTTGCGCGTTCCCCGCGCCTGCGGGGATGAACCGATTACGGCACGGGGCGATCAGGGAAACGGGTCGCGTTCCCCGCGCCTGCGGGGATGAACCGGCGCAACAGTTCATCACCGTATGACGTGTACGGCGTTCCCCGCGCCTGCGGGGATGAACCGCCCTGGCGCCCGGACGATGCCCGTGTCTATCAGCGTTCCCCGCGCCTGCGGGGATGAACCGATGAACCGATCACCAGCCTTGTCCCACGGCAAGCGTTCCCCGCGCCTGCGGGGATGAACCGTCCTTGAGTCTTTGTGGAGATACACTAATGGAGCGTTCCCCGCGCCTGCGGGGATGAACCGGCGATGGAGCTGTTTGGCGCGCGCTACTTTAGGCGTTCCCCGCGCCTGCGGGGATGAACCGGGCCGATGGCAAGTGCGGATAGAGGATTTGAGGCGTTCCCCGCGCCTGCGGGGATGAACCGAAAGGCTGGTTAGGTGGCATCAGAGCCATTAAGCGTTCCCCGCGCCTGCGGGGATGAACCGTCCGGTAGGGGCATAGGACGTAAAGCGAACCCGCGTTCCCCGCGCCTGCGGGGATGAACCGTGTTCAGCACAGCCTTGTTGCTTGAACTCTCGGCGTTCCCCGCGCCTGCGGGGATGAACCGTCATCGGTAGTCATTAAATCTGCTACTCGTATGCGTTCCCCGCGCCTGCGGGGATGAACCG

>AP017372|5|4|761958-763756|CRISPRCasFinder
GCGTTCCCCGCGCCTGCGGGGATGAACCT	CGGACTCGACCTCCTCCATCGAGCCGTAACTC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GTATGAGCGACAGCAATCTTAGCACTGTCAAA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GCACAGACGACTACTGAATCTTACGGTTTCCA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	ATAATGCAAGACATGCTAACCGATGCAAATCC
GCGTTCCTCGCGCCTGCGGGGATGAACCG	ATATCCTTAACGCCCTCCGAGACTACTAACCA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GTCGGGGCTGTCTTAGTGAGGCCCGACCGGAC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TACCCTCATCTTCCGATGAGACTAACATATCC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GACGACGAAACCATTCGCGCTAGCGAAGAATA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	AGTTGGGTGCTGAGCTTGTCCCTGCAATGCTT
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CGTTCAGCTGCTCGCGGACACGCTCTTCGTCA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CTGCCCATGGAATATGAGCCGGATCGCCATTG
GCGTTCCCCGCGCCTGCGGGGATGAACCA	TCCCGCGTCTATACCGACAAGAGTTTGGGCGC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TTTGCCGCGGAACACCCTGAAGCCACGCCAGA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	ATAACCGGCGGCGGTGAGCCGTCAGATGAGTG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	AGTTTAGACCCGAGCGAGTACGGACAGCAGGC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GTTGAGTTGCAAACCACCGACCTGCCTACAGA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TTCGCCGGTAGAAAGCTGATTTTCAAGCGCGAC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TATCACTGGTTGTACGGCGCACCGCTGCTTGC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	ATTACGGCACGGGGCGATCAGGGAAACGGGTC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GCGCAACAGTTCATCACCGTATGACGTGTACG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CCCTGGCGCCCGGACGATGCCCGTGTCTATCA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	ATGAACCGATCACCAGCCTTGTCCCACGGCAA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TCCTTGAGTCTTTGTGGAGATACACTAATGGA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GCGATGGAGCTGTTTGGCGCGCGCTACTTTAG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GGCCGATGGCAAGTGCGGATAGAGGATTTGAG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	AAAGGCTGGTTAGGTGGCATCAGAGCCATTAA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TCCGGTAGGGGCATAGGACGTAAAGCGAACCC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TGTTCAGCACAGCCTTGTTGCTTGAACTCTCG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TCATCGGTAGTCATTAAATCTGCTACTCGTAT
GCGTTCCCCGCGCCTGCGGGGATGAACCG

>AP017372|5|2|761958-763756|CRT
GCGTTCCCCGCGCCTGCGGGGATGAACCT	CGGACTCGACCTCCTCCATCGAGCCGTAACTC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GTATGAGCGACAGCAATCTTAGCACTGTCAAA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GCACAGACGACTACTGAATCTTACGGTTTCCA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	ATAATGCAAGACATGCTAACCGATGCAAATCC
GCGTTCCTCGCGCCTGCGGGGATGAACCG	ATATCCTTAACGCCCTCCGAGACTACTAACCA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GTCGGGGCTGTCTTAGTGAGGCCCGACCGGAC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TACCCTCATCTTCCGATGAGACTAACATATCC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GACGACGAAACCATTCGCGCTAGCGAAGAATA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	AGTTGGGTGCTGAGCTTGTCCCTGCAATGCTT
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CGTTCAGCTGCTCGCGGACACGCTCTTCGTCA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CTGCCCATGGAATATGAGCCGGATCGCCATTG
GCGTTCCCCGCGCCTGCGGGGATGAACCA	TCCCGCGTCTATACCGACAAGAGTTTGGGCGC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TTTGCCGCGGAACACCCTGAAGCCACGCCAGA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	ATAACCGGCGGCGGTGAGCCGTCAGATGAGTG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	AGTTTAGACCCGAGCGAGTACGGACAGCAGGC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GTTGAGTTGCAAACCACCGACCTGCCTACAGA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TTCGCCGGTAGAAAGCTGATTTTCAAGCGCGAC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TATCACTGGTTGTACGGCGCACCGCTGCTTGC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	ATTACGGCACGGGGCGATCAGGGAAACGGGTC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GCGCAACAGTTCATCACCGTATGACGTGTACG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CCCTGGCGCCCGGACGATGCCCGTGTCTATCA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	ATGAACCGATCACCAGCCTTGTCCCACGGCAA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TCCTTGAGTCTTTGTGGAGATACACTAATGGA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GCGATGGAGCTGTTTGGCGCGCGCTACTTTAG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GGCCGATGGCAAGTGCGGATAGAGGATTTGAG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	AAAGGCTGGTTAGGTGGCATCAGAGCCATTAA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TCCGGTAGGGGCATAGGACGTAAAGCGAACCC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TGTTCAGCACAGCCTTGTTGCTTGAACTCTCG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TCATCGGTAGTCATTAAATCTGCTACTCGTAT
GCGTTCCCCGCGCCTGCGGGGATGAACCG

>AP017372|5|3|762141-762900|PILER-CR
GCGTTCCCCGCGCCTGCGGGGATGAACC	GATAATGCAAGACATGCTAACCGATGCAAATCC
GCGTTCCTCGCGCCTGCGGGGATGAACC	GATATCCTTAACGCCCTCCGAGACTACTAACCA
GCGTTCCCCGCGCCTGCGGGGATGAACC	GGTCGGGGCTGTCTTAGTGAGGCCCGACCGGAC
GCGTTCCCCGCGCCTGCGGGGATGAACC	GTACCCTCATCTTCCGATGAGACTAACATATCC
GCGTTCCCCGCGCCTGCGGGGATGAACC	GGACGACGAAACCATTCGCGCTAGCGAAGAATA
GCGTTCCCCGCGCCTGCGGGGATGAACC	GAGTTGGGTGCTGAGCTTGTCCCTGCAATGCTT
GCGTTCCCCGCGCCTGCGGGGATGAACC	GCGTTCAGCTGCTCGCGGACACGCTCTTCGTCA
GCGTTCCCCGCGCCTGCGGGGATGAACC	GCTGCCCATGGAATATGAGCCGGATCGCCATTG
GCGTTCCCCGCGCCTGCGGGGATGAACC	ATCCCGCGTCTATACCGACAAGAGTTTGGGCGC
GCGTTCCCCGCGCCTGCGGGGATGAACC	GTTTGCCGCGGAACACCCTGAAGCCACGCCAGA
GCGTTCCCCGCGCCTGCGGGGATGAACC	GATAACCGGCGGCGGTGAGCCGTCAGATGAGTG
GCGTTCCCCGCGCCTGCGGGGATGAACC	GAGTTTAGACCCGAGCGAGTACGGACAGCAGGC
GCGTTCCCCGCGCCTGCGGGGATGAACCGGTTGAGTTGCAAACCACCGACCTGCCTACAGAGCGTTCCCCGCGCCTGCGGGGATGAACCGTTCGCCGGTAGAAAGCTGATTTTCAAGCGCGACGCGTTCCCCGCGCCTGCGGGGATGAACCG	TATCACTGGTTGTACGGCGCACCGCTGCTTGC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	ATTACGGCACGGGGCGATCAGGGAAACGGGTC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GCGCAACAGTTCATCACCGTATGACGTGTACG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CCCTGGCGCCCGGACGATGCCCGTGTCTATCA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	ATGAACCGATCACCAGCCTTGTCCCACGGCAA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TCCTTGAGTCTTTGTGGAGATACACTAATGGA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GCGATGGAGCTGTTTGGCGCGCGCTACTTTAG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GGCCGATGGCAAGTGCGGATAGAGGATTTGAG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	AAAGGCTGGTTAGGTGGCATCAGAGCCATTAA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TCCGGTAGGGGCATAGGACGTAAAGCGAACCC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TGTTCAGCACAGCCTTGTTGCTTGAACTCTCG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TCATCGGTAGTCATTAAATCTGCTACTCGTAT


>AP017372|5|4|762996-763756|PILER-CR
	GATAATGCAAGACATGCTAACCGATGCAAATCC
GCGTTCCTCGCGCCTGCGGGGATGAACC	GATATCCTTAACGCCCTCCGAGACTACTAACCA
GCGTTCCCCGCGCCTGCGGGGATGAACC	GGTCGGGGCTGTCTTAGTGAGGCCCGACCGGAC
GCGTTCCCCGCGCCTGCGGGGATGAACC	GTACCCTCATCTTCCGATGAGACTAACATATCC
GCGTTCCCCGCGCCTGCGGGGATGAACC	GGACGACGAAACCATTCGCGCTAGCGAAGAATA
GCGTTCCCCGCGCCTGCGGGGATGAACC	GAGTTGGGTGCTGAGCTTGTCCCTGCAATGCTT
GCGTTCCCCGCGCCTGCGGGGATGAACC	GCGTTCAGCTGCTCGCGGACACGCTCTTCGTCA
GCGTTCCCCGCGCCTGCGGGGATGAACC	GCTGCCCATGGAATATGAGCCGGATCGCCATTG
GCGTTCCCCGCGCCTGCGGGGATGAACC	ATCCCGCGTCTATACCGACAAGAGTTTGGGCGC
GCGTTCCCCGCGCCTGCGGGGATGAACC	GTTTGCCGCGGAACACCCTGAAGCCACGCCAGA
GCGTTCCCCGCGCCTGCGGGGATGAACC	GATAACCGGCGGCGGTGAGCCGTCAGATGAGTG
GCGTTCCCCGCGCCTGCGGGGATGAACC	GAGTTTAGACCCGAGCGAGTACGGACAGCAGGC
GCGTTCCCCGCGCCTGCGGGGATGAACCGGTTGAGTTGCAAACCACCGACCTGCCTACAGAGCGTTCCCCGCGCCTGCGGGGATGAACCGTTCGCCGGTAGAAAGCTGATTTTCAAGCGCGACGCGTTCCCCGCGCCTGCGGGGATGAACCG	TATCACTGGTTGTACGGCGCACCGCTGCTTGC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	ATTACGGCACGGGGCGATCAGGGAAACGGGTC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GCGCAACAGTTCATCACCGTATGACGTGTACG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	CCCTGGCGCCCGGACGATGCCCGTGTCTATCA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	ATGAACCGATCACCAGCCTTGTCCCACGGCAA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TCCTTGAGTCTTTGTGGAGATACACTAATGGA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GCGATGGAGCTGTTTGGCGCGCGCTACTTTAG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	GGCCGATGGCAAGTGCGGATAGAGGATTTGAG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	AAAGGCTGGTTAGGTGGCATCAGAGCCATTAA
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TCCGGTAGGGGCATAGGACGTAAAGCGAACCC
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TGTTCAGCACAGCCTTGTTGCTTGAACTCTCG
GCGTTCCCCGCGCCTGCGGGGATGAACCG	TCATCGGTAGTCATTAAATCTGCTACTCGTAT
GCGTTCCCCGCGCCTGCGGGGATGAACCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
AP017372.2|BAU57426.2|767583_767928_+|hypothetical-protein	unknown	unknown	gnl|CDD|376684
AP017372.2|BAU57415.2|758738_759665_+|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl|CDD|274693
AP017372.2|BAU57423.2|765234_765834_-|mobile-element-protein	unknown	unknown	gnl|CDD|373239
AP017372.2|BAU57416.1|759667_759967_+|CRISPR-associated-protein	cas2	pfam09707_cas2_CAS-I-E	gnl|CDD|236930
AP017372.2|BAU57424.1|766204_767125_+|possible-multi-domain-protein	unknown	unknown	gnl|CDD|235264
AP017372.2|BAU57409.1|750875_753662_+|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|182031
AP017372.2|BAU57418.1|761572_761887_-|hypothetical-protein	unknown	unknown	gnl|CDD|225511
AP017372.2|BAU57411.1|755613_756222_+|CRISPR-associated-protein	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl|CDD|187862
AP017372.2|BAU57422.1|763849_764542_+|hypothetical-protein	unknown	unknown	gnl|CDD|372975
AP017372.2|BAU57428.1|769427_769673_+|HigA-protein	unknown	unknown	gnl|CDD|274228
AP017372.2|BAU57410.1|753976_755617_+|CRISPR-associated-protein	cas8e	pfam09481_cas8e_CAS-I-E	gnl|CDD|187860
AP017372.2|BAU57414.1|758032_758734_+|CRISPR-associated-protein	cas6e	cd09727_cas6e_CAS-I-E	gnl|CDD|187858
AP017372.2|BBE11013.1|765019_765238_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU57429.1|770279_771059_-|WD40-repeat-protein	unknown	unknown	gnl|CDD|369445
AP017372.2|BAU57430.1|771076_771562_-|tmRNA-binding-protein-SmpB	unknown	unknown	gnl|CDD|235455
AP017372.2|BAU57417.2|760736_761147_-|mobile-element-protein	unknown	unknown	gnl|CDD|222853
AP017372.2|BAU57413.2|757295_758033_+|CRISPR-associated-protein	cas5	cd09645_cas5_CAS-I-E	gnl|CDD|187886
AP017372.2|BBE11012.1|764624_765014_+|twitching-motility-protein-PilT	unknown	unknown	gnl|CDD|350221
AP017372.2|BAU57412.1|756247_757285_+|CRISPR-associated-protein	cas7	pfam09344_cas7_CAS-I-E	gnl|CDD|378153
AP017372.2|BAU57427.1|767945_768938_+|putative-stomatin/prohibitin-family-membrane-protease-subunit-YbbK	unknown	unknown	gnl|CDD|223407

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
AP017372.2|BAU57416.1|759667_759967_+|CRISPR-associated-protein	cas2	pfam09707_cas2_CAS-I-E	6.8e-40	129.9	0.5
AP017372.2|BAU57414.1|758032_758734_+|CRISPR-associated-protein	cas6e	cd09727_cas6e_CAS-I-E	3.2e-54	178.9	0.1
AP017372.2|BAU57415.2|758738_759665_+|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	5.9e-115	377.7	0.0
AP017372.2|BAU57409.1|750875_753662_+|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	4.4e-77	254.7	0.0
AP017372.2|BAU57411.1|755613_756222_+|CRISPR-associated-protein	cse2gr11	cd09731_cse2gr11_CAS-I-E	3.5e-31	103.0	2.9
AP017372.2|BAU57412.1|756247_757285_+|CRISPR-associated-protein	cas7	pfam09344_cas7_CAS-I-E	4.5e-123	406.0	0.0
AP017372.2|BAU57413.2|757295_758033_+|CRISPR-associated-protein	cas5	cd09645_cas5_CAS-I-E	3.6e-55	181.3	0.2
AP017372.2|BAU57410.1|753976_755617_+|CRISPR-associated-protein	cas8e	pfam09481_cas8e_CAS-I-E	1.2e-134	444.5	4.4

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
AP017372.2|BAU57426.2|767583_767928_+|hypothetical-protein	gnl|CDD|376684	pfam01957, NfeD, NfeD-like C-terminal, partner-binding. NfeD-like proteins are widely distributed throughout prokaryotes and are frequently associated with genes encoding stomatin-like proteins (slipins). There appear to be three major groups: an ancestral group with only an N-terminal serine protease domain and this C-terminal beta sheet-rich domain which is structurally very similar to the OB-fold domain, associated with its neighboring slipin cluster; a second major group with an additional middle, membrane-spanning domain, associated in some species with eoslipin and in others with yqfA; a final 'artificial' group which unites truncated forms lacking the protease region and associated with their ancestral gene partner, either yqfA or eoslipin. This NefD, C-terminal, domain appears to be the major one for relating to the associated protein. NfeD homologs are clearly reliant on their conserved gene neighbor which is assumed to be necessary for function, either through direct physical interaction or by functioning in the same pathway, possibly involve with lipid-rafts.	3.33005e-11
AP017372.2|BAU57415.2|758738_759665_+|CRISPR-associated-protein-Cas1	gnl|CDD|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.98711e-150
AP017372.2|BAU57423.2|765234_765834_-|mobile-element-protein	gnl|CDD|373239	pfam14706, Tnp_DNA_bind, Transposase DNA-binding. This domain occurs at the C-terminus of transposases including E. coli tnpA. TnpA encodes a transposase and an inhibitor protein, the inhibitor only differs from the transposase by the absence of the N-terminal 55 amino acids, which includes most of this domain. This domain consists of alpha helices and turns, and functions as a DNA-binding domain.	2.95429e-18
AP017372.2|BAU57416.1|759667_759967_+|CRISPR-associated-protein	gnl|CDD|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	6.77901e-57
AP017372.2|BAU57424.1|766204_767125_+|possible-multi-domain-protein	gnl|CDD|235264	PRK04247, PRK04247, endonuclease NucS.	9.04348e-07
AP017372.2|BAU57409.1|750875_753662_+|CRISPR-associated-helicase-Cas3	gnl|CDD|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	5.99445e-148
AP017372.2|BAU57418.1|761572_761887_-|hypothetical-protein	gnl|CDD|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.37274e-06
AP017372.2|BAU57411.1|755613_756222_+|CRISPR-associated-protein	gnl|CDD|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.0859e-23
AP017372.2|BAU57422.1|763849_764542_+|hypothetical-protein	gnl|CDD|372975	pfam14236, DUF4338, Domain of unknown function (DUF4338). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 206 and 475 amino acids in length.	4.42393e-70
AP017372.2|BAU57428.1|769427_769673_+|HigA-protein	gnl|CDD|274228	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair. [Regulatory functions, DNA interactions, Regulatory functions, Protein interactions, Mobile and extrachromosomal element functions, Other].	1.42867e-25
AP017372.2|BAU57410.1|753976_755617_+|CRISPR-associated-protein	gnl|CDD|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.53843e-141
AP017372.2|BAU57414.1|758032_758734_+|CRISPR-associated-protein	gnl|CDD|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.72361e-57
AP017372.2|BAU57429.1|770279_771059_-|WD40-repeat-protein	gnl|CDD|369445	pfam07635, PSCyt1, Planctomycete cytochrome C. These proteins share a region of homology at their N-terminus that contains the C-{CPWHF}-{CPWR}-C-H-{CFYW} motif typical of cytochromes C, or CxxCH.	5.2208e-11
AP017372.2|BAU57430.1|771076_771562_-|tmRNA-binding-protein-SmpB	gnl|CDD|235455	PRK05422, smpB, SsrA-binding protein SmpB.	2.23388e-83
AP017372.2|BAU57417.2|760736_761147_-|mobile-element-protein	gnl|CDD|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.30074e-40
AP017372.2|BAU57413.2|757295_758033_+|CRISPR-associated-protein	gnl|CDD|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.50536e-44
AP017372.2|BBE11012.1|764624_765014_+|twitching-motility-protein-PilT	gnl|CDD|350221	cd09873, PIN_Pae0151-like, VapC-like PIN domain of the Pyrobaculum aerophilum Pae0151 and Pae2754 proteins and homologs. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of the Pyrobaculum aerophilum proteins, Pae0151 and Pae2754, and homologs are included in this subfamily. They are similar to the PIN domains of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.68453e-27
AP017372.2|BAU57412.1|756247_757285_+|CRISPR-associated-protein	gnl|CDD|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.89345e-119
AP017372.2|BAU57427.1|767945_768938_+|putative-stomatin/prohibitin-family-membrane-protease-subunit-YbbK	gnl|CDD|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	2.26799e-59

Protein sequences

>AP017372.2|BAU57418.1|761572_761887_-|hypothetical-protein
MKSKSPKKYSQQYKTMAVNMHREQGYTKTEVARRLDLTRGMIYRWERELYPEEFQNNSTNHGQARKPSAELEEENRRLREENRKLQEERAILKKAAAFFANEQN
>AP017372.2|BAU57417.2|760736_761147_-|mobile-element-protein
MAAVMDLYNRQIVGWAIANNMRVELTLDALEMAIERCNPEPGLVHHSDRGSQYASTIYQDRLRQEGMIASMSRKGNCWDNAVMERFFGSLKSEWTDHCRYQGFHDASKDIAQFIEWEYNAGRGHTSLEGLAPAEVC
>AP017372.2|BAU57416.1|759667_759967_+|CRISPR-associated-protein
MAMLVVVTEAVPPRLRGRLAIWLLEVRAGVYVGDVNRRVREMIWEQVNALVEDGNVVMAWSSRHESGFEFQTCGKNRRVPVDYEGLRLVRFAPDPEAEG
>AP017372.2|BAU57415.2|758738_759665_+|CRISPR-associated-protein-Cas1
MTTEFVPLKPIPIKDRVSMIFVGRGQLDVRDGAFVVVDEVNGERMHIPVGSVACLLLEPGARISHAAVKLAATVGTLLIWVGEAGVRLYSAGQPGGARSDKLLYQARLALDEKLRLKVVRRMYALRFQEEPPERRSVEQLRGIEGARVRKMYKVLAQKYGVEWKGRSYDPNEWDNADPVNKCLSAATSCLYGVCEAAILAAGYAPAIGFLHTGKPQSFVYDVADIVKFETVVPAAFRVAAQNPAQPDRAVRIACRDSFRDTHVLQRLIPLIEDLLEAGGIDPPPPAPEAQPPAIPEPKSIGDHGHRSK
>AP017372.2|BAU57414.1|758032_758734_+|CRISPR-associated-protein
MFLSRVHINPQALTPKNLMPVLEGDSYRNHQLLWRLFTEEDERPFLFRQEFEHSFDSSSGKPRGLPLFYVLSRVEPQADSELFSCEVKSFEPKLSAGQQLAFKLRANPVVAKREEGRKNSRHHDVLMDAKRAAKDNGVTDKVAIRCYMDEAAQSWLANKGRSEKAGYTLQSAPEVSGYQQHVHRRKGRDIRFSSVDFQGILTVNDPERFAQSLAEGIGRSRAFGCGMWMVRRV
>AP017372.2|BAU57413.2|757295_758033_+|CRISPR-associated-protein
MNYLVFRLYGPLASWGEAAVGPTRPSASYPGRSAILGLLAAALGIRREEEATLAQLRDNVTLAVKQCSAGTLLRDYHTAQVPSHDKKAVWLTRRDELGVAKDKLNTILSAREYRSDGYWVVAIRLSDEAPWTLDEMAEALRHPRFMLYLGRKSCPLAAPLHPRVVSAGGVREALSEEFPGFTGSKMEDDEKRRLGIDAEVSFAWEGDAGDILPQETRYPYDEPLHRGRWQFASRSEHWHQTREES
>AP017372.2|BAU57412.1|756247_757285_+|CRISPR-associated-protein
MSTFIQLHLLTSYPPANLNRDDLGRPKTARMGGVDRLRVSSQSLKRTWRTSELFEDALVGHVGTRTKRLGTEVYEALTGAGIAEKKSLEWARAIANVFGKIQKSGTEIEQLAHLSPEERQGVDELVATLIQEQRAPTEDELKLLRKNPHAADIGLFGRMLAAHPAFNVEAACQVAHAITVHPVAVEDDYFTAVDDLNFGEEDMGAGHIGETGFAAGLFYSYVCINRDQLIDNLSGDVELADKAIAALTEAAVKVSPKGKQNSFGSRAYASYVLVEKGRQQPRSLSVAFLKPVYGQDQAGTAIKALEGQRESFEKVYGPCAEGHYVLNAVAGEGSLDELKAFLVQN
>AP017372.2|BAU57411.1|755613_756222_+|CRISPR-associated-protein
MSRSNINYQVLREAEARSSVYQWWQRVSRAVEADGEGGLPAFSTAVRPALRRAKTPDDALLTEGFRLLWFAVPDNLKAPRNMPALGCVAAVLAEVREMDQQKSFAAAMGSQVEKTGKPRVSELRFQQLQQSHDLEELQRRLRRAVALLGKKVHVLSLADNIMQWHREKSGHPDYRPDRRLPVRWATDYFTELASYQKAAATN
>AP017372.2|BAU57410.1|753976_755617_+|CRISPR-associated-protein
MNLIDEPWLPFRLRSGAIEYGPPCELAREDVVDLAPPRADFHGAAWQFLIGLLQTTCPPDDLEEWQAWWADPPTAEQLQEHFARVRHAFNAFGDAPLFMQELDPMEDARSASVASLLIEAPGDQGIKFNTDHFIKRGFGEAMCPRCASLALFTMQVNAPAGGSGYRTGLRGGGPLTTLVLPDDSQAPLWQKLWLNVLNADDLGGGEPDFTDGSVFPWLAATRVSKQAGTEITPEEVHPLHAYWAMPRRFRMHKEEAECRCQVCGAETTEVVREVRAKNYGHNYGGAWVHPLTPYRQDPKKPDEPPLSTKGQQGGLGYRHWEALVLEDTRNHQNLPARVVLDYQEKAEALRDFGSVSQHARLWVFGYDMDNMKARGWYATYMPLLAIPKEQGLRDRFLEWIDAMVQAASDAAWLLRSTVKSAWYSRPKDASGDFSFIDQRFWEGTESAFYSHLHQLAERLPEQDGAFMPEDVARRWHMTLYETALELFDELSLAGDAEALDMKRIVAARNELGKRLWRNKTMKTLRTWAGMEEGVGKSKDKAAKEEA
>AP017372.2|BAU57409.1|750875_753662_+|CRISPR-associated-helicase-Cas3
MESLPAYFRYWAKIPKERGFGWDACHLLPYHALDVAATGKYLLDSDEELLERFSAAVQMAPDVFRRLLVFSLALHDLGKFARSFQSLAAIDGVDLVEPDPRYVYRSRHDALALAYWKHYGQECLRNPETGNEWLDAPSELTGRQSLAFWLSVAFGHHGKPVDMEKAALDLAFSPEDKAAAWGFVEDAAALLEPSFPHAQLSDKHWRDHVLKPASWELAGFGVLADWLGSDQSVFGHRAESMPLATYWHEYALPGAEQVVERSGLRGHKEMVAFPGFSQMFGFEPAPLQSWAESVPLADGPQLFLLEDITGAGKTEAALTLAHRLLAAGHRNGVYFALPTQATSNAMYTRVGAVYRDFYSRDSQPSLVLAHGARQLRDDFTRSILPEMAPDTPYTPDDEGGLAQCSQWLADSRKKALLADVGVGTVDQALLGVLPRRHQSLRLLGLARKVLVVDEVHAYDTYTGTLLERLLEAHARHGGSAILLSATIPQSMRRRFLEAWQRGREGGQALQPASEAFPLATHLYSEGLDETPVAARTSSERDLPVDFVHSEEEALSRVVEAARSGRCACWIRNTVDDAIGAYQALRESLPEPDKALLFHARFTMGDRQRIENDALRLFGKESGNAERAGRVLIATQVVEQSLDLDFDVLVSDLAPVELLIQRAGRLYRHARTPDGDLLLSGTDQRESPVFHVHAPEWNDEPDAEWVRRALIGTSYVYPDFGMLWLTMRVLRERGAIRLPAEARLLLEAVYAPEVDVPEGLQRASDEALAEQLSHRSMAGFNVLDLSKGYSGKSVEGGWSDDEEIGTRLSDEPSVQVVLVRVDENQRVKPWNSDTAHPWAMSTVQLRKSQADRLPSLPEELGHEIELLREEVRSLRYARFWLPADERAANHAAYDSLLGAVIPRKGGEQEASTVGTVPHSGSSSNENEEH
>AP017372.2|BAU57422.1|763849_764542_+|hypothetical-protein
MLRLHEQGKITLPPSRLRKRRRRATFPPTPATDPQPLLNTPVNMMPKPTFHIVQGNAAQSRCWNEYIARYHYLGYTPLDGHQIRYNVYAGEQLVALLGFGASAWKLADRERFIGWSSEQRERNLSLVVNNTRFLILPWVQVRGLASKILGLAARQLPLDWQQRYGFQPVLLETFVEWPRHTGTCYKAANWQWVGRTTGRGKKSTSHKQRLPTKDIWLYPLRRDFANRLCS
>AP017372.2|BBE11012.1|764624_765014_+|twitching-motility-protein-PilT
MDIVADTNIFLAVALNEPDRDRIITLTADASALAPEILPYEIGNALSAMVKRRQLSYSEALEAEKSVRRIPVRLVSTDIRSSLQLALDQDIYAYDAYFLQCAQALSCPLLTLDRRMRQVARELGIRVLE
>AP017372.2|BBE11013.1|765019_765238_+|hypothetical-protein
MKVFTYSEARQNLSKLLVLAQREEVEIRRKDGSTFSLRAKPRESKSPFDVPGVSTTATTSDILEAVRESRES
>AP017372.2|BAU57423.2|765234_765834_-|mobile-element-protein
MFLNPPPNMYGFWQPTTAELPIDDWARHEFAHARCGDRRLQERLITVARDFAAHSQADTPEACGTRARTKAAYRFLANPRASMQQLIRSHAQASAGRCRHHDVVLAVQDTTTLNYSAPTITEGLGPIGSRADGAQGLIVHDTMAFSTEGTPLGLIDVYAWARHCEDRGLRRLSGDCYLPYRSNVANQPREERASAEWPC
>AP017372.2|BAU57424.1|766204_767125_+|possible-multi-domain-protein
MPRYWVIAPIDSQPADFFEKVWRFDIEKEVISIGWSQFGDVSGMSRDELAKVVAHHYPEKPQQTKGLITNMVWSFCHKIEPGDVVIARRGRKILAAVGTVREKAFYKAGKNPDVDHRLFLPVTWHQEPRDKDFGAVVFPMPTLAEIDETQYQSLVEGSGLEVAKSEDGETYENQAEFVLEKYLEEFIVSNFSGIFKGELEVYVDEDGNTGQQYTTDIGSIDILAEDRRNNSLVVIELKKGRPSDQVVGQIMRYMGWVKKNLALEDQKVRGLVICRGEDQRLSYALEMVDHVDIRYYKVSFSLTERP
>AP017372.2|BAU57426.2|767583_767928_+|hypothetical-protein
MAGMALFGMGAALLGLSWEFQILSAALSGVLLIPLALKALKKLTPGELSQSLDDPRLRGQQFKVYTDSGGQARVTVFGDEFMARPSSIDQSLKDGSLVRIVRFEGNTAIVTPND
>AP017372.2|BAU57427.1|767945_768938_+|putative-stomatin/prohibitin-family-membrane-protease-subunit-YbbK
MNSDVPIPEITTLLIVLLAVLLIIIIIKGLVIVPQRHAMVIERLGRYHRTLNAGLNLIIPILDQPRPITIVRYRDNQKTINTEKKIDLREVVLDFPKQEVITKDNVGVRIDGVLYYQIMDAQAAIYGAENLVLAVQTLAQTSLRSEIGRMELDQIFESRQEINARLQNTMDDAGNKWGVKVNRVEIRDIDIPDDIREAMNKQMAAERARRAEVREAEGYKQAEILKAEGDKEAAVQRAEGEKRAIQQILEAAAGTEGLEARDAMRYLIAQEYMETLPKVAQEGERVFIPLEATSLMGSVGGIRELLGPTTGAAAASSSSSSGAGSGGSGG
>AP017372.2|BAU57428.1|769427_769673_+|HigA-protein
MQITQRELADAIHVPYQRVNELVNQKRGITPSTALRLARFFGVSADFWLNLQVRWDLYKTQQVEKDELAEIQDVTHWQKMA
>AP017372.2|BAU57429.1|770279_771059_-|WD40-repeat-protein
MEVASAFVAWFYDILAFFGYTHPVHPIFVHITIGLVVAAMVFALIALVPQYNRYAITARDCVTFAFISAVPTMLVGLMDWVHYFGGHLSSLFKIKITLALILIPLLGLAVYLHSKLNIRSILLHIVYLAGFVNIVLLGYYGGELIHASATPHAETAADEDPDRDPDAVTYSQVSRIMQNQCVHCHSRHNDLGGLDLSSYDALMEGGDSGAVVEPGEPQESLLVLMLDGSEEPLMPLGGPELPQSDIDTISKWVEKGAER
>AP017372.2|BAU57430.1|771076_771562_-|tmRNA-binding-protein-SmpB
MSKKAGKSKAGGGNVIAVNRKAGFDYFIEERLEAGLALEGWEVKSMREKRVNLTESYVLVRRGEAWLVGCNITPLSTASTHIRPDPTRTRKLLLHRREISRLAGSVDRAGYTVVPLQLYWKRGKAKLEIGLAKGKQKQDKRADKKEKDWQRQRERLLKHKV

Crispr_ID: AP017372_6

• CRISPR_ID: AP017372_6
• CRISPR_location: 2199793-2199897
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of AP017372_6

Consensus_repeat	Method
CCTCCAGGGATGGATTCACGGCGTCCTCCACACC	CRISPRCasFinder

spacers of AP017372_6

>6.1|2199827|37|AP017372|CRISPRCasFinder
GGGGCGGGTGGTGGCGCCGGCGAAGTTTTAGAGGTGC

CRISPR arrays and Neighbor proteins around AP017372_6

CRISPR arrays

The CRISPR arrays of AP017372_6

>merge|AP017372|6|2199793-2199897|CRISPRCasFinder
CCTCCAGGGATGGATTCACGGCGTCCTCCACACCGGGGCGGGTGGTGGCGCCGGCGAAGTTTTAGAGGTGCCCTCTAGGGATGGATTCACGGCGTCCTCCACACC

>AP017372|6|5|2199793-2199897|CRISPRCasFinder
CCTCCAGGGATGGATTCACGGCGTCCTCCACACC	GGGGCGGGTGGTGGCGCCGGCGAAGTTTTAGAGGTGC
CCTCTAGGGATGGATTCACGGCGTCCTCCACACC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
AP017372.2|BAU58686.1|2205644_2205941_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58690.1|2207599_2207794_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58689.1|2206703_2206955_-|YefM-protein	unknown	unknown	gnl|CDD|171099
AP017372.2|BAU58683.1|2200903_2201332_-|hypothetical-protein	unknown	unknown	gnl|CDD|235502
AP017372.2|BAU58669.1|2178538_2181907_-|diguanylate-cyclase/phosphodiesterase-with-PAS/PAC-sensor	unknown	unknown	gnl|CDD|182070
AP017372.2|BAU58677.2|2190516_2194395_-|diguanylate-cyclase/phosphodiesterase-with-PAS/PAC-sensor	unknown	unknown	gnl|CDD|236842
AP017372.2|BAU58679.1|2194859_2197997_+|sensory-box-histidine-kinase/response-regulator	unknown	unknown	gnl|CDD|274362
AP017372.2|BAU58673.1|2186024_2188763_-|diguanylate-cyclase/phosphodiesterase-with-PAS/PAC-sensor	unknown	unknown	gnl|CDD|274362
AP017372.2|BAU58670.1|2182155_2184612_-|diguanylate-cyclase/phosphodiesterase-with-PAS/PAC-sensor	unknown	unknown	gnl|CDD|274362
AP017372.2|BBE11137.1|2206485_2206707_-|hypothetical-protein	unknown	unknown	gnl|CDD|284238
AP017372.2|BAU58675.2|2189753_2190440_+|two-component-system-response-regulator-OmpR	unknown	unknown	gnl|CDD|223816
AP017372.2|BAU58681.1|2198263_2199610_-|copper-sensory-histidine-kinase-CpxA	unknown	unknown	gnl|CDD|236532
AP017372.2|BAU58691.1|2207932_2209705_+|protein-of-unknown-function-DUF262-family	unknown	unknown	gnl|CDD|377008
AP017372.2|BAU58692.2|2209697_2212175_+|protein-of-unknown-function-DUF262-family	unknown	unknown	gnl|CDD|377008
AP017372.2|BAU58682.1|2199927_2200668_-|copper-sensing-two-component-system-response-regulator-CpxR	unknown	unknown	gnl|CDD|223816
AP017372.2|BAU58687.2|2205977_2206457_-|2'-5'-RNA-ligase	unknown	unknown	gnl|CDD|274058
AP017372.2|BBE11136.1|2177861_2178041_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58684.2|2201553_2204940_-|pyruvate-carboxylase	unknown	unknown	gnl|CDD|237263
AP017372.2|BAU58671.2|2184599_2185778_-|HD-domain-protein	unknown	unknown	gnl|CDD|225116
AP017372.2|BAU58674.1|2189424_2189757_+|hypothetical-protein	unknown	unknown	gnl|CDD|225108

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
AP017372.2|BBE11137.1|2206485_2206707_-|hypothetical-protein	gnl|CDD|284238	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system. YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in pfam02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as an antitoxin-toxin pair. When the plasmid is lost, the antitoxin is degraded relatively quickly by host enzymes. This allows the toxin to interact with its intracellular target, thus killing the cell or impeding cell growth. These toxins are highly potent protein synthesis inhibitors, specifically blocking the initiation of translation. In the case of YoeB, it binds to the 50 S ribosomal subunit in 70 S ribosomes and interacts with the A site leading to mRNA cleavage at this site. As a result, the 3'-end portion of the mRNA is released from ribosomes, and translation initiation is effectively inhibited.	3.765e-26
AP017372.2|BAU58689.1|2206703_2206955_-|YefM-protein	gnl|CDD|171099	PRK11409, PRK11409, YoeB-YefM toxin-antitoxin system antitoxin YefM.	6.79792e-28
AP017372.2|BAU58692.2|2209697_2212175_+|protein-of-unknown-function-DUF262-family	gnl|CDD|377008	pfam03235, DUF262, Protein of unknown function DUF262.	3.79966e-18
AP017372.2|BAU58669.1|2178538_2181907_-|diguanylate-cyclase/phosphodiesterase-with-PAS/PAC-sensor	gnl|CDD|182070	PRK09776, PRK09776, putative diguanylate cyclase; Provisional.	1.26302e-25
AP017372.2|BAU58677.2|2190516_2194395_-|diguanylate-cyclase/phosphodiesterase-with-PAS/PAC-sensor	gnl|CDD|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	4.43991e-81
AP017372.2|BAU58679.1|2194859_2197997_+|sensory-box-histidine-kinase/response-regulator	gnl|CDD|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.85479e-81
AP017372.2|BAU58683.1|2200903_2201332_-|hypothetical-protein	gnl|CDD|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0.00968251
AP017372.2|BAU58670.1|2182155_2184612_-|diguanylate-cyclase/phosphodiesterase-with-PAS/PAC-sensor	gnl|CDD|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.12016e-78
AP017372.2|BAU58675.2|2189753_2190440_+|two-component-system-response-regulator-OmpR	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.05374e-54
AP017372.2|BAU58681.1|2198263_2199610_-|copper-sensory-histidine-kinase-CpxA	gnl|CDD|236532	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA.	5.63282e-78
AP017372.2|BAU58691.1|2207932_2209705_+|protein-of-unknown-function-DUF262-family	gnl|CDD|377008	pfam03235, DUF262, Protein of unknown function DUF262.	3.45966e-22
AP017372.2|BAU58673.1|2186024_2188763_-|diguanylate-cyclase/phosphodiesterase-with-PAS/PAC-sensor	gnl|CDD|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	3.59904e-73
AP017372.2|BAU58682.1|2199927_2200668_-|copper-sensing-two-component-system-response-regulator-CpxR	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.94541e-80
AP017372.2|BAU58687.2|2205977_2206457_-|2'-5'-RNA-ligase	gnl|CDD|274058	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. [Transcription, RNA processing].	1.06774e-41
AP017372.2|BAU58684.2|2201553_2204940_-|pyruvate-carboxylase	gnl|CDD|237263	PRK12999, PRK12999, pyruvate carboxylase; Reviewed.	0
AP017372.2|BAU58671.2|2184599_2185778_-|HD-domain-protein	gnl|CDD|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	4.28445e-30
AP017372.2|BAU58674.1|2189424_2189757_+|hypothetical-protein	gnl|CDD|225108	COG2198, ArcB, FOG: HPt domain [Signal transduction mechanisms].	0.000836046

Protein sequences

>AP017372.2|BAU58681.1|2198263_2199610_-|copper-sensory-histidine-kinase-CpxA
MGSLFLKLFLWLWLTGIIIAGAFVVSWHHWAPASSLPSQAELEQVAEEISNLYAEEGGWGAVHGYLRSLSRDQKLRFVLLGQDELATRGMQRRMLRGLSQQDREILLDTAEDRGRLNGMLYKRVVVDFAGAHDFYLIALHPVEGLGGLPVWLRAVIALAVTGGLAGGLAAYLSRPLRRLRRASQALASGDLHARVPVVERGGDEIAALGRDFNAMAERLESLVEAQNRLLRDISHELRSPLSRLQVALELARRETSGDSNALAKMENDIERMDQLIGQLLTLARLESGAGASNMESVDLHELIGQVCEDAQFEAQASGCNVLKEDGPHLQITGDRHLLRSALENVLRNALRYTPAGGVINVAWQRDQDGIWVSVIDSGPGVSEERLNDLFEPFVRLSAARERDSGSCGLGLAIVRRAVQAHGGSVAAHNRPQGGLEVRFWLPLKGPAS
>AP017372.2|BAU58679.1|2194859_2197997_+|sensory-box-histidine-kinase/response-regulator
MGRDKVEQRTSDFSQNLLDKLPVAVCSLDSAGCFTYLNTAACQLLGYPDESALLGVNFSAVIDAERTPLPADTVTERLVAATDEPLCADTTLWLQPRVGAALPVEVEVAALRSAETAAGEVAVTLRECRTVQDITEQRARERFQQQLVAILDSTSDLVTLHGSDGSLIYINEALRARFGLQQLPSCPSVEEAIRRRHPPWAADLLLNEGLPTARREGLWQGQTAFLDADGQEIPASQVIIGHRDSSGEVVQLSTIIRDISDLKRTQQEAVESEQRFRLIAEHTRDVFWLRSEQKALYVNPAYERIWGQTREHFYANPNSFLESVHPEDRKEVETAINQAIAAGEEINIRYRIVRPDGDVRWMEARSSPFKISGTEETLRAGVARDVTDEALAMRRLEQLVAILDNTSDIVALHGEDGTLLYLNAAGRAKAGIDNQAVDGMLGIADDGSMPPLSLEEAISRFHPPWAADLLLNEGLPTVRREGLWQGETAILKADGTQAPTSQVLIGHRNSYGELTYISTILRDISDQKKAQQEVAESERRFRLIAENIRDAFWLRTDAQTLYVNPAYERIWGQPVESFYANPKAFLESIHPEDRYGVEKALDQAISEREEFNALFRIIRSNSEVRWIQMHSLPVPGRESEGMRAGIARDVTEREQALIQLREANRTKSEFLNAVSHDLRTPLNAIIGFTDLLADSELDAHQREQVKLCQAAGRTLLGLIDTLLDLSRLKAGRMTLQKEAFLLRKFLAERMPMLSQQAEDKGLNLQCSVDNGLPDRLQGDTTRLSQVLFNLVSNAIKFTDSGYVRVHFSRYDSKRLQVSVQDNGPGIPDEFQERIFEPFDRGTDAIKHLQGSGLGLAISRQLVNLMGGEIWLHSTPGQGSTFFFTAELPEDESEPAVDPAQTAPESANGAPADRENVAGTRVLVAEDEPTNILLIQALLERCGAEATVAENGQEALDIWQQAEQEFDLILLDMQMPILDGAQTVKSLREAEVAQNRVYTPVAMLSAHASTEVREQCLQSGADTYMTKPVRLDSLTDLLSWAKRRQR
>AP017372.2|BAU58677.2|2190516_2194395_-|diguanylate-cyclase/phosphodiesterase-with-PAS/PAC-sensor
MENKKGSKCGCLSAKCKLDLLQQVSGIGFWEYDLCTGQVNADAQCQSLYGYDNSESERSLATDYALWREHVHPEDLSWVEEEVQAAIANGQPWRFTYRIYRSDGQLCWLHSSGHVERDDQGEPCLLIGFEQDVTAQKLQEQALEQAHERLQRAEEIVSLGHWISYPATGELIWSPMTYQLCGFPAEAEPPGWEEFIARIPEQDRHQVAEYQLQSKADTDQSQGEYRIVHPNGRVVWVREIANRWQDENGRWIIQGTIQDITEQREALERSEARRQRLEAILETIPDVALTETDLEGTIREASRSAERIFGYSREELLGSDICMLHDPAEHARVREGIARLQRTAQGYSVECELIRGTGERFQAQLSVAPLLNERGEVVGKIGACIDLSAQFADEQRLRMAQEAAGFGVWDWDLAADQVYWDEACWRMLGYDPEQQSILTFADWQKFVHPEDLERVQPIVESHLAAGSPFTIELRYRCADGSWLWVQGRGQTLRRGADGSPTYMVGTHVDVQTLKETEFALRRSELELTEAKRIARLGHWLYDIKSGDVHWSSEIYEIIGLEPAETAMDWDTFLSRVPPEDHPELYEAIERTLNRGDPYELEHHLMSVDGGRRIVQARGYAEFDAAGNPQLLRGTAQDVTEQRVLQRELAEREAHYRDLVENQPLMIERFLPDTTVTYANPALGDCLGVEPEALIGQRWLDYLPAEERENIEAHLAGFTPSHPVSQFENSMPGKNGMQLWTMWTNRAFFDEKGELSHFQSVGVDITERRRAEQAEQQLREQLETRQKELEAIFAAARSVSLIKTDLNSVIEEASTGAEVLFGYSREELIGRHVSLLHTAEDIERLADYVERLFKDHEPIRMETDLVHRDGSRFPALFTVHPITDKHGELVATLGVSLDMSAQKRVEQELADTIRAKDTFLSAVSHDLRTPLNALMGFLELLDDPQLSAEQRSEYMEQCRQGAQRLLGLIETLLDLARLEAGRLELRPRATELPALIDNQVAMLRSRACEKGLSLDYSIAEAVPRWVEVDDTRLGQLLSNLLSNAVKYTQQGGVELEVRTVDNTRVSFAVHDTGPGLTEQQQKEIFTAFDRGGYRGTSQGYGLGLAIVSELINLLDGELSLSSTPGQGSTFAFTIPLPRASEPSPEGESSIAAGESDAEPTASSARRPLNILVADDEPANVMLAQALLLKLGCEVVCAQSGTEALAAWQAEDFDMLLLDLKMPDLDGDQVARNVRAEEHEQGRQPTRIVLCTAYAYSEVESLINESGCDAYLGKPLDRSALSSLLDWVASSYAK
>AP017372.2|BAU58675.2|2189753_2190440_+|two-component-system-response-regulator-OmpR
MKPPHILLIEDERSSRSICLNALLRAEYQATVALTAREGLRLLRSTHFDLVLLDLNLPDADGLSLASTLHGSHPELPIIMMTVRTAAEQRAAGLEAGAVDYLSKPFHQTELIHRVRRALAAGPPTPATQITFGPWLLEVEQRSLHHAEGFELELTLGEARLIEFLLRARGRPVNRDQLAEAVARSREGNPKSVDVLVSRLRRKLEDKTRGLRHIVAVPGLGYRIEVGE
>AP017372.2|BAU58674.1|2189424_2189757_+|hypothetical-protein
MEIIDIDSALERLDGDRELCRELLLDFYIDYYEVDRILRDRLRDGATEDARQLLHNLRGAAGNLGMGRLETVAKTLSQQIRLGAVEVSALNNFSEALHRVLSELEHTKRL
>AP017372.2|BAU58673.1|2186024_2188763_-|diguanylate-cyclase/phosphodiesterase-with-PAS/PAC-sensor
MATLNVNEEYPGESLDVALCRFRPDTTLTFVNAAYARLFGGGSGSLLGQRWIEWVPVSARPRVWSVLAQLGPAAPFQTYTHEVCLVDGGVMPYQWTDVALFGPDLEVTEIQSVGHPVDGGCSSDATAAEAATCYSGGEQLLVESEWRARIISEAMEEVVWLRAGDQMLYVNSSYERIWGRSIEELMANPDSFLDAVHPGDRERIICSWAACKAGDVRFDETYRIVRPDGEVRWVHAVNSAPFASAGYTACSVGSARDVTAQIEIEQALYQANHDLRVAEQIARLGHWISDLHEGTLTWSPVTFQLCGFDVSRSPPDFDAFLERVHPEDRPKVAESQLAREPQRERTEAEYRIIHTDGRVVWVRELAQRDKGEEGQPILRGTIQDITAMKEAQATARQRQEELEGIFKAATSVGLVKTDLASSVIDVSAGAEQLFGYSREELIGQPVNCLHITEDQADLAKWVGHLVCEQRELNFETRLMRKSGESFPARLFIHPIQDEHGSVVATLGVTFDISDLKAVQQQLEDASRIKTTFLRAVSHDLRTPLNALISYVELLGNADLSREQRQNFVKRCQEAGERQAQLIDSLLDIARLQSGNIQLKRVPMELHQLLEEQCRLLLQRAQEEGLTLEWSIAEDVPGWVIGDPTRLVQVLSNLVENAIKYTDRGRVCVEVQAEGGELVGFAVKDSGPGLSEAQQQTMFNAFDRLGYDGPVAGSGLGLAIAKELAHRLGDGLWVESAPGQGSTFGFTAHLPPCAPAQKVEDKIEEQLPESNSLGQSLRVLVAEDEQTSAVVVPLRLQRLGCEVTLVKRGDAALEAARQGVFDLLLLDLSMPGLNGIEVARVLRSEEDARPGVRRVPKVLCTAYSREEIEQEFDLVEVDALLEKPIREKHLRQLISRVRLGLDPAEAGGRPYGV
>AP017372.2|BAU58671.2|2184599_2185778_-|HD-domain-protein
MRAGYEDSPAILGLGANIQVGDRLTFDVYDEEGRLLMRRGKQILSQNQLRRIFHDGRVELSGRSLSKLGHSRFTHPGGPAVRRGNPVQEDLSPHERLHACAQALQRNYERIRAGERDFLPRLRQVVERLQRLIDLDTDAALGVAHLSRAYPEHILQPLRQAIVADIVARAAGCCEGYRNSLIGAALSADIGMLELRAVLDQQSTDISQAQRKALVEHPERSAQILREAGLDDDNWLRAVMEHHERLDGSGYPRGIRGDSVCDIAGLLMVANVYMAMVTPRAHRSARPPKEVLRELFCEADHLYPAHYAQYIVRELGIYPPGTVVELETGDVGVVTRRAGKWARPWFYSLQRAAGRRLRAFECNLTEEDLEIVRSYRPEDIKVPIPECAPWGY
>AP017372.2|BAU58670.1|2182155_2184612_-|diguanylate-cyclase/phosphodiesterase-with-PAS/PAC-sensor
MGLLKGTLAYADWLWVQGRGQTLRRGADGSPTYMVGTHVDVQTLKETEFALRRSELELTEAKRIARLGHWLYDIKSGDVHWSSEIYEIIGLEPAATAMDWDTFLSRVPPEDHPELYEAIERTLNRGDPYELEHHLMSVDGGRRIVQARGYAEFDAAGNPQLLRGTAQDVTEQRVLQRELAEREAHYRDLVENQPLMIERFLPDTTITYANPALAAYVQTEPDRLIGQRWIDLFPVDEQKRAQAHLTSLTPQQPVGRLENSLTGADGLRYWILWTNRAFFDDSGTLSHFQAVGVDITARRRAEQAEQQLREQLETRQKELEAIFAAARSVSLIKTDRDTVIQEVSCGTEALFGYSRSELIGQHVSMLHVQEHVEARQLDQSSLPIRLETKMRRRDGTTFMAHLAVHPILDADDQIIAALGVSFDISDQKRVEQELADAIRAKDTFLSAVSHDLRTPLNALMGFLELLDDPQLSPEQRSEYMEQCRQGAQRLLGLIETLLDLARLEAGRLELRPRATELPALIDNQVAMLRSRACEKGLSLDYSIAEAVPRWVEVDDTRLGQLLSNLLSNAVKYTQQGGVDLEVCAVDDTRVSFAVHDTGPGLSEQQQKEIFTAFDRGGYRGTSQGYGLGLAIVSEFINLLDGELSLSSTPGQGSTFAFTIPLPRASEPSPEGESSIAAGESDAEPTASSARRPLNVLVADDEPANVMLAQALLIKLGCEVVCAQSGTEALAAWQAEDFDMLLLDLKMPDLDGDQVARSVRAEEHEQGRQPTRIALCTAYAYSEVESLISESGCDAYLGKPLDRSALSSLLDWVASGLQR
>AP017372.2|BAU58669.1|2178538_2181907_-|diguanylate-cyclase/phosphodiesterase-with-PAS/PAC-sensor
MDGSSAKPNKLTAGFLHQLLDSQAVAVCALDSGGRFTYLNPAACRRLGHSDDTALLGERFDTVIDTERAEPSAAALTEQLTAVAVTGEPLSIYSVLWLHPCARTSFPVIIEASPLNSDETEERGVVVTFRDATVQHHALNQALQRAEQAERIGAIGHWIHYPESGQLIWSLMTYELFGFDPDGSKPDWGAFIARVPEADRGQIAESQFKADPSRRSCEGEYRIVHPGGRTLWVREIAQRLKDENGQSIIQGTIQDITKQRKALERSEAQRQRLAAILRTVPDVALIETDLEGKVSELNRSAELMFGYSREAFLGSDIYMLHDPAEHAQVREGIARLQRTAQGYSVECELIRGTGERFRAQLSVAPLLNERGEVVGKIGACIDLSAQFAREQRLRMAQEAAGFGVWEWDVETDRAHWDEASWRMLGYDPEQQGTLTYAQWQALVHPEDLERILPEFEHHLAAGTPFTIEFRYRCADGSWLWVQNRGQTLRRAADGSPIYMVGTHVEIQQLKETERALAKSEQRFRDVTLAAGEYIWEIDPEGRYTFITSPAEPLLGRPVEAIIGCSVFDFMPDDEAERVHGLLQAWADERSAWRDLEHVSLRPDGSLVHQRVSGLPILDEDGNLTGFRGTGRDITAEKEAERAQKRLTERLRLATSAAELGIWEYDLKSGRLECDECMCRLYGIDPATFGHASEGWVEAPESKSLDTTVFGNTFEDWAETLLPDSRDSTVAALNEAVASRTPFDIQMEIRRADDGSCRTLHGHAQVICDASGIPVRIVGISRDITAEQEYRRQLAAAKERFAGIFEQTGSGVAVYRPVDEGRDFECIEINPASERLDQITRDEVIGRRLTDCFPGVVEMGLLAALQRVARTGVPEELPLASYQDKRITAWRENRIFRLSSGEVVAVYDDRTEIKQAQQESERARKQLANLTAQLPGFIYQYRLWPDGRHAFVYANGRAEQIYGVTPEQAIEYPDHLFEVIYEADRGEFYRSIERSAQALTPWYQTFRIHHSSKGTAWLEGNSMPERLADGSTLWHGYIHDITDRVRAEQELAQSKARLEEFFNQSISGFFFMMLDEPIDWQGATEEQKEALLDYALTHVVGCQNPYIFGGGFKNKHIYWVVKS
>AP017372.2|BBE11136.1|2177861_2178041_-|hypothetical-protein
MIAAIATVASNAQLLPAASPCARRVGVIKTLGEAKPSMQSARVVIEPGPGLDPYPYPYP
>AP017372.2|BAU58682.1|2199927_2200668_-|copper-sensing-two-component-system-response-regulator-CpxR
MTRILLVDDDQELTAMLSDYLTGDGFEVVTAYDGQKALEKVDTAGPDIIVLDIMLPVYDGFEVLRRLRQSHHDQPVLMLTARGDDVDTVVGLELGADDYLPKPCNPRVLVARLRALLRRTQSEVASSAEQLQVGDLCLDLGQRRATLRGCESAAITPLELTDAELDLLACLLRRVGQAVDKDKLSREALNRPLTPYDRSIDWHISNLRRKLGPFDDGSERIKTVRGVGYQYVSGKGTYKHSPGASL
>AP017372.2|BAU58683.1|2200903_2201332_-|hypothetical-protein
MRKQILSTGILCLTAALFSPSVLASDSKGELEQSWERGAMQERIIQRLDLSDEQRDKLLEIRNRHLDKMHEEMKEVLTGEQLEKFLDLRESAEQRLRQGGGGDWRGDSRSGSNNRSDSGRGEFGRGESGRGEPGRDGSGRGN
>AP017372.2|BAU58684.2|2201553_2204940_-|pyruvate-carboxylase
MRAANELGKRTVAVYAQEDKLGLHRFKADEAYQIGEGMGPVEAYLSIDEIIRVAKMAGADAVHPGYGLLSENPRLVDACERAGITFIGPRAETMRALGDKASARHVAIAAGVPVIPASEVLGEDMAAARRWADEIGYPLMLKASWGGGGRGMRPILGPEELEAKVLEGRREAEAAFGSGEGYLEKVIERARHVEVQVLGDTHGGLYHLYERDCTVQRRNQKVVERAPAPYLTPEQRAEVCELGLKVARHVDYQNAGTVEFLMDMDTGSFYFIEVNPRIQVEHTVTEEVTGIDIVKAQIRISEGEHLDAATGKADQGEIWLNGHAMQCRVTTEDPQNNFIPDYGRITAYRSATGMGIRLDGGTAYAGGVITRYYDSLLVKVTAWAPTPTEAISRMDRALREFRIRGVSTNIPFVENLIKHPVFLDNTYTTKFIDTTPELFEFDKRRDRATRLLTYLAEITVNGHPEVIDRPRPAAGIPLPTPPKAQGEPLPGTRNLLEEQGPQGLVDWLAGRKELLLTDTTMRDAHQSLLATRMRTFDMVRVAPAYAANLPQLFSVECWGGATFDVAYRFLQECPWQRLRQIREAMPNVMTQMLLRGSNGVGYTNYPDNVVRAFVHQAAASGVDIFRVFDSLNWVENMREAMDAVLETGKVCEGTICYTGDILDPGRAKYDLKYYVKMGKELRDAGAHMLGVKDMAGLLKPEAARVLFPALKEEVGLPIHFHTHDTSGIAGATILAAADVGVDVADVAMDSFSGNTSQPVFGSIVEALRHTERDTGFDMENVRAISNYWEQVRAHYAAFETGQQSPSSEVYLHEMPGGQFTNLKAQARSLGLEERWHEVAQAYADANQIFGDIVKVTPSSKVVGDMALMMVSQGITREQVEDPAVDVNFPDSVIDMLRGNLGQPPGGWPQGIQQKVLKGEQPLQDRPGKYLEPLDLEEARQQASEALDGAEIDDEDLNGYLMYPKVFTEYMRRSQRYGPVSALPTRNFFYGMEPGEEISVDIEYGKTLEIRLMTVSEPGDDGNRRVFFELNGQPRTVHVADSKAKAQVVQTPKAESDNPAHVGAPTPGVVAAVAATPGQRVKAGDLLLTIEAMKMEMGLHAERDGEIKAVHVQPGSQIEAKDLLIEFAE
>AP017372.2|BAU58686.1|2205644_2205941_+|hypothetical-protein
MSFQWRTYTFETPWEALVGAWAEISDINNLQISTVRSLATDCDAATRHISQEDANDSLPRIYDVGTHAEEQEVPFDPDDHITALMEAAERALHELGEA
>AP017372.2|BAU58687.2|2205977_2206457_-|2'-5'-RNA-ligase
MPSGHGGRPVARDNLHLTLAFIGAADTAYAECLAEAAQAVRFEPFAFELQGLGCFGNGKVLWLGNVKPREPLERLAQDLSAVLQPCGFEPEARPFCPHVTVVRKPKAPLNLGPIEPVLWEVERFCLVSSIPAQGGVKYEVVRSYCAAKDHARSGTGDLP
>AP017372.2|BBE11137.1|2206485_2206707_-|hypothetical-protein
MKLIFSENAWEDYLYWQKTDKKILNRINRLIKEIKREPFEGVGKPEPLKHSSTARRVNPYGSASTPLLRAVAR
>AP017372.2|BAU58689.1|2206703_2206955_-|YefM-protein
MDAISYTAARANLAKTMEQVCEDHSPVIITRSKSQSVVMISLEDYEALQETAYLLRAPKNARRLLESVVELEQGGGQEKALFE
>AP017372.2|BAU58690.1|2207599_2207794_-|hypothetical-protein
MWVNSYVYFRRLRADEDIRPLSEFRAGVASYYECPKSTFTKHNVVGAAYLLKGERIGKQQPGRN
>AP017372.2|BAU58691.1|2207932_2209705_+|protein-of-unknown-function-DUF262-family
MDTRGDENSALQVKVQSFEELTAAGRELKLDDYQRGFVWDEQRVRQLIDDLAEFANQQLSNSKATQPAYAYYMGTVLLSRESEQPGERGNSAYVIDGQQRLAALSLLWSAAQEGSEVPPAMAFSYRDSRSQAQLQAAYKTIMTGLDRTGLKATHRTRELFKDVELFRHITLTVVTTGSIDEAFTFFDSQNSRGVPLHTTDLLKAHHLRAIRNHAPHQSSQAEPIQRDSARRWEGMQQASNEKNSPAGEDPVHRLFNYYLWRARNWFGPLSQRPLYPSRKALQKTFKQNAYPPRELENRLRGRPPEAVNGAEGNKLAEGGIDRVACFPCTARVHHSVVKWEPHQKEWDMEVSLPSLGTAPHNLPFTLRQPIAEGAGFFLYAQRYERLLAHMETPPQVEHVPGQRSGDDWTDFRHLYQKVVLELSHYLRQAFLLASMLYIDRFGTCRLYEFALWLEYILGAERLIKASIFQSSSRSVLERNDAGSESIGNLLDFIAVNEIPDPVIRALQEDRAADKALEKALQDNISEGSFTFGEHSVRDRYIKAVSRYFNQADKDRDKEKLPENDQERRDWILERRNWITDMLRSGGINHG
>AP017372.2|BAU58692.2|2209697_2212175_+|protein-of-unknown-function-DUF262-family
MGNKHEARSGWQDSRLMTLSQLVTATDNEETGRSIGDPTVRFRVPIYQRLYVWKKEQIERLLNDILDAWKAGNADYYIGGTLVVERQSSDRQSQDLELIDGQQRLTTLLLTALYRLDAQKQPVESSSSYHDLLFHPGTASAGRDPRLHFEIRDKANIWLHTALRKGLKEARKLNLAEEQAHDNFGISPHNETISDDTPRDGGIVKLEYGIEIIEEWFTNNSTLISDQPQGQCDFDTYLLNHVRMLVTSVPGTMDLNHLFETINDRSVQLEHHEVLKARMLKWLKGDDNGEGKEGTYTACARIWEACSAMDDYWEDALAEAAGKNKVNVYEAIIEHKIWRSGALGGSVLSSVALSGKAAIDLCRPKDVAQNSDPAKDEVSLEKLVKDWGNASDLPSNTDKAGDGDHAEKQSSASLISFPMLLLHTLRIWLHRHGPKGADLERFDSFKLLETFDALLLSDNSMSHPLPDIRERVKSFIELLWEVRFLLDQYIIRWVELKEGGEWGHRILRLEQNKSTSLRRADAEQSGDKELSLLQSMLYHSQDIRQLLWLTPLLGYLHSRTFPTEERSGQTALVPSEQGTESDLTVFMRHLDNGLFSSPSLGSKNSETEAESLLQRSRAFLEKPWRSFKKPTIEPLHGGFHGTDDMPRTSHYWYYKADFVIWRRYQGGSQSNESLPQLQGQNDVTQGQLEDAWQHFRFTARASVEHIRPQTSQEEGQEKEGWGDALHSFGNLALVSRERNSEFSNKPYHEKRVKYLTRLRQKDLQSPKLALVYLYGGVPEPSGLGLKHGEWGAEHAKAHMEWIERSMEEYFSLAGYSGKKIADTEP

Crispr_ID: AP017372_7

• CRISPR_ID: AP017372_7
• CRISPR_location: 2237053-2237231
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of AP017372_7

Consensus_repeat	Method
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CRISPRCasFinder

spacers of AP017372_7

>7.1|2237089|35|AP017372|CRISPRCasFinder
TAGTTGTTGTTGCTATTCTTGAAGACCAATCCATT
>7.2|2237160|36|AP017372|CRISPRCasFinder
CTTCCTCTTTTTGACTTTCTAGGCGAGCGCGTGTAA

CRISPR arrays and Neighbor proteins around AP017372_7

CRISPR arrays

The CRISPR arrays of AP017372_7

>merge|AP017372|7|2237053-2237231|CRISPRCasFinder
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACTAGTTGTTGTTGCTATTCTTGAAGACCAATCCATTGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACCTTCCTCTTTTTGACTTTCTAGGCGAGCGCGTGTAAGTCTGAATCCGGCCCTGCTTGGGAAGGGAACAAGAC

>AP017372|7|6|2237053-2237231|CRISPRCasFinder
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	TAGTTGTTGTTGCTATTCTTGAAGACCAATCCATT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CTTCCTCTTTTTGACTTTCTAGGCGAGCGCGTGTAA
GTCTGAATCCGGCCCTGCTTGGGAAGGGAACAAGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
AP017372.2|BAU58716.1|2235494_2235935_-|hypothetical-protein	unknown	unknown	gnl|CDD|377317
AP017372.2|BAU58710.1|2230107_2233065_-|hypothetical-protein	unknown	unknown	gnl|CDD|380283
AP017372.2|BBE11147.1|2242497_2243277_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BBE11144.1|2237968_2238130_-|hypothetical-protein	unknown	unknown	gnl|CDD|369777
AP017372.2|BAU58720.1|2240280_2241786_+|hypothetical-protein	unknown	unknown	gnl|CDD|371365
AP017372.2|BAU58712.1|2233633_2234419_-|hypothetical-protein	unknown	unknown	gnl|CDD|378066
AP017372.2|BBE11150.1|2244655_2244853_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BBE11145.1|2238382_2238769_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58719.1|2239331_2240291_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58713.2|2234415_2234907_-|hypothetical-protein	unknown	unknown	gnl|CDD|380289
AP017372.2|BAU58717.1|2236023_2236422_-|UPF0047-protein-Bsu-YugU	unknown	unknown	gnl|CDD|223509
AP017372.2|BBE11148.1|2243677_2243917_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58721.1|2241823_2242126_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58709.2|2228430_2230128_+|hypothetical-protein	unknown	unknown	gnl|CDD|372975
AP017372.2|BBE11143.1|2228202_2228550_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58711.1|2233080_2233653_-|hypothetical-protein	unknown	unknown	gnl|CDD|378040
AP017372.2|BBE11149.1|2244250_2244493_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BBE11146.1|2242170_2242398_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58708.1|2226023_2227760_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BBE11142.1|2227756_2228293_+|hypothetical-protein	unknown	unknown	gnl|CDD|365803

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
AP017372.2|BAU58716.1|2235494_2235935_-|hypothetical-protein	gnl|CDD|377317	pfam04343, DUF488, Protein of unknown function, DUF488. This family includes several proteins of uncharacterized function.	2.65269e-23
AP017372.2|BAU58710.1|2230107_2233065_-|hypothetical-protein	gnl|CDD|380283	NF033441, BREX_BrxC, BREX system P-loop protein BrxC. BrxC is a P-loop-containing protein, and probable ATPase, from BREX (bacteriophage exclusion) systems of type 1.	0
AP017372.2|BAU58709.2|2228430_2230128_+|hypothetical-protein	gnl|CDD|372975	pfam14236, DUF4338, Domain of unknown function (DUF4338). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 206 and 475 amino acids in length.	2.21894e-25
AP017372.2|BAU58711.1|2233080_2233653_-|hypothetical-protein	gnl|CDD|378040	pfam08747, DUF1788, Domain of unknown function (DUF1788). Putative uncharacterized domain in proteins of length around 200 amino acids.	1.89717e-06
AP017372.2|BAU58720.1|2240280_2241786_+|hypothetical-protein	gnl|CDD|371365	pfam11074, DUF2779, Domain of unknown function(DUF2779). This domain is conserved in bacteria. The function is not known.	1.03658e-47
AP017372.2|BAU58712.1|2233633_2234419_-|hypothetical-protein	gnl|CDD|378066	pfam08849, DUF1819, Putative inner membrane protein (DUF1819). These proteins are functionally uncharacterized. Several are annotated as putative inner membrane proteins.	3.99357e-29
AP017372.2|BAU58713.2|2234415_2234907_-|hypothetical-protein	gnl|CDD|380289	NF033447, BrxE_fam, BrxE family protein. This family is uncharacterized, but a subgroup within this family is BrxE, a protein of unknown function found in type 6 BREX phage resistance systems.	3.44521e-44
AP017372.2|BAU58717.1|2236023_2236422_-|UPF0047-protein-Bsu-YugU	gnl|CDD|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	3.09365e-50
AP017372.2|BBE11144.1|2237968_2238130_-|hypothetical-protein	gnl|CDD|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	8.87303e-08
AP017372.2|BBE11142.1|2227756_2228293_+|hypothetical-protein	gnl|CDD|365803	pfam00004, AAA, ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.	9.25875e-07

Protein sequences

>AP017372.2|BAU58717.1|2236023_2236422_-|UPF0047-protein-Bsu-YugU
MRTTITVTTHQREELVDITEPIRRAVAEAEVSDGLLALYVQGATAAIMIQENWDASVPRDAVNLLQQLVPRGVWEHDAQDGNGDSHLKAGLIGPSETIPIINGKMGLSTWQGIFLCEFDGPRRERTVVCTLN
>AP017372.2|BAU58716.1|2235494_2235935_-|hypothetical-protein
MHTLYTIGYERTYLEAFIATLQRASVATIIDVRASPHSRRREFAFKHLARELPGAGIGYESWPVLGAPQAARDAAKAGDAQRFYQLYASHLEEPKTQDALHSLAERAVTEAVALLCYERDPAECHRLLIAERLERSHKLASHHLAG
>AP017372.2|BAU58713.2|2234415_2234907_-|hypothetical-protein
MRAIEVLAELRALVGYLGEEHGWWGSQFFARSSRTFLMPVFPRSLPLSQYQGVTVAAARAHDERIGVGRIVHLFRMPELHEQAAAAVLRDATGIDQVLAHLGSREEAMQRLSALAYPVEPNEGPVLVGGWDEDLALSLGKMAGHYAAAIHENRRAYPYLRHAE
>AP017372.2|BAU58712.1|2233633_2234419_-|hypothetical-protein
MSEARLYTTRLQAGLGLVDETLALLELYRSGMSVRELYTAALDSGRFPTMTARRLLNLVQEGFAPRYMEDPEVAAILKRLAEYWQRDELIQLFMLYTARANCILADFIREVFWPRYMAGFDELSRDDATAFVEAAVREGRTQKPWAPSTVRRVASYLLGTCTDFGLLGNCRLPPRPIRPVRIHPRVATYLAYNLRGLGFADRQIIRHPDWGLFGLEGDDVRQQLKRLAPEGHFIVQSAGDVTQITWGYRTMGEAVNALAGH
>AP017372.2|BAU58711.1|2233080_2233653_-|hypothetical-protein
MPSLDINFNELMERIRRGREFGHASFEPIFYLVFSPEEILSVKRKMHAWTSRLANEGWEVHTFSIAQAVDEILSNAPMRQTWLMADRRKPVDWDKTNSSLANAIANGALQQRLEATLEPLEGNQHAILLVTDLEALHPYMRIGVIEGQLQGRFQVPTVFFYPGIRTGDTRLKFLGFYPEDGNYRSVHVGG
>AP017372.2|BAU58710.1|2230107_2233065_-|hypothetical-protein
MAIKDLFDPSRDIYRSIEKVIAFGVSQEERLKKEIAEYVVTDAIDEQFNDLLRKMQAAMDAGGENEVGVWVSGFYGSGKSSFTKYLGLAFDESVTVDGVPFRQHLQDRLKSSSTRQLLNNVAKRFPAAVLMLDLATEQVSGATMAEVSSVLYYKVLQWAGYSRNLKVAYLERRLKQEGRYEEFLEMFREKTNGEDWSGYRNDELVIDSLIPEIAHELYPQLFPTQQAFNTESTDVVRFENDRVQEMLEIVREASGKEYVIFIIDEVGQYVGSRPQMILNLDGLAKNIKAQGQGKVWIIGTGQQTLTEDVPGASVNSQELFKLKDRFPININLQADDIKEICYRRLLGKSAEGSRQIGELFDQYGQALRQSTKLEDARAYGADFDRQTFIDLYPFLPAHFDILLHLLGSLARSTGGIGLRSAIKVIQDILVDETGNRTPVADRPVGWLANNVILYDALEKDIERAFPTIHKAVANVYKTHYVASELHQRVAKTVAVLQILGNLPITRRNVASLMHPDATQPSEATEVEGAIEDLIGDSYVPFGEQNGGLRFFSEKLNDIEQERSKLPIRQAERKRLINIALGEAFSPLPTTQLGGSLSVQSGLKVQNGGLPTSLAGERNSIQTLVELVDPADYEAARTRLTDESVTRNAEQQVLLIGRYPTEIDDLTAEIHRSQEIANKYRNEPDQEVKEYCKSQQDRAARLQGELQRQLKRSLVQGSFIFRGQVTAVETLSSDLIEAARKHLAEVATQVFDRYSEAPVCANTDLAERFLRVGNLNGVTSQLDPLGLVQTVNGQPQINTQNRAIVSIRDHVDKVGQVEGKSLTKRFSEAPFGWSQDTLRYLVAAMLMAGVIKLRVGGRDVTVNGQQAQEALKTNNAFKNVGVSLRDDSPSNEMLALAAERLTEFTGESVVPLEDEISRTAMGLFPKLQQRFAQLSAKLTSLELPGGERLGNLTQAMVEMQEADASDAPQRLWALHTSRLASWRSAA
>AP017372.2|BAU58709.2|2228430_2230128_+|hypothetical-protein
MSGLASHVLGQILRRLPEDWAAKYGEPPVLVETFIDRSRHRGGCYRAANFIYIGDTAGRGRNDRYHEGGAGAKAVYLYPLCSDWRRRLGAPEQPPCTPDIDDWARHEFAHVSLGDQRLQQRLIRVGRALAAQPTASLPQACGNRAATQAAYRLFAHPRVTMNSILGSHYQATVSRCHAEPVVLAVQDTTTLNYVAHPLSEAGFGPIGSRADGAHGLIVHDTLAINPSGTPLGLIDVQAWARETEDHGLRRLGSDEWTLDNKESGKWTDSHQRASELQQQLDTGTRVVSVADREGDLFELLTAATDPERADLLVRAKHDRPLADGSGRLFGHMKALDAAGVQELTLPKRGNQKARTTRMAVTFDRVTLQPPKNKRGQEPVTLDVIRTTEINPPKGAQPVTWTLLSTVPVETLEDACERLAWYTKRWQIEVYHRTLKSGCRIEERQLGSADSLEACLGVDLVVAWRVSLLTHQSREDPNAPCTVFFTPDQWKALWVRTGAEGIPEDNDEPTLREATRTVATLGGFLGRRSDGEPGAQALWKGLQRLDDITEMFCIMIERARSGRAPP
>AP017372.2|BBE11143.1|2228202_2228550_-|hypothetical-protein
MAAAIDESLDQNRGLAVLSGPVLGQAAQDLTKHMARQSRHTQVPPDQKARVANHPIEVLGAGNIAPTDPAVAGAKPQSWRRKGERRYVAKVLAAHEIAQAPPDQRAGAKKVLGFE
>AP017372.2|BBE11142.1|2227756_2228293_+|hypothetical-protein
MSTTPVSLKDAHAILHHQASALLAEPSRAHQLPPTLLWGPPGVGKSSVIRDVCDELNIGFIDIRLSQREPVDLRGLPVPRAGRDTQLRWTLQLCPCTLPPWILEETWRHWRTGLRRIVGDLCSSTGSEIWGESSATRLKAMRICGSGRSYSKPSTFLAPARWSGGACAISCAARTLAT
>AP017372.2|BAU58708.1|2226023_2227760_+|hypothetical-protein
MACLSLTREIQHERRVVQPEPDRNGGARLTDLGERSVRIEAASLHALDLLDAPRLEHLDLTGCRPGLFLALARCPHLQRIDLPAGEPGAVIHWDQHGVIDNEAVIYGAVEHLDLCGRGYAFGLPSTGAAARSWQGARICTTPASWFAATEQALIWLGSECTPVKLKIPQPARSIAIHGPGVEAVEAREDAALEAIDLHQALDLRQITLASPLYGLAIERAERLERVLASGEALQLKYCGDLLSGVLLEGTWSHALLADTTIRDDTAPVLEQVVVRGGERPIGQGQARHVHPWLPENRRTPLLASEIPLLLEAAQAGERRASTALIRWAEAVPRRNVLFALQTLYSLLERPDPPFERIWQARQTLARRFSSSQRPRPEWGWNLPEDLIEEALRMDLRLFARCRGQVTATMRLDVHLRNAPRSQVLRILAAIAADRGVPTAERSVALDLLREALAVAARGFIARPRGAEYQGPPSDLGPLVRVIIEQADRSMADDLLTWGERVVTLSKRVRYLGEFAAHGHAPSRAAALAIGLQCPPSGQHRRWGAEQAQAIRQQAMAAALTPPRSDRLADLNANQEARS
>AP017372.2|BBE11144.1|2237968_2238130_-|hypothetical-protein
MLDIGAGSGRDAAWLAEQGHDVVAVEPAAELRQEAQRRHPDEWISWLGNMVPI
>AP017372.2|BBE11145.1|2238382_2238769_+|hypothetical-protein
MNKTRSKLYKAARILGDVQAVKRGRVGQRIARRSVGRAVGRGLGKSGCYIASCAYADAKHPDVEALRHFRDGFLIQKKWGRKFIAFYEKTAPGLVARHGHRQWLNKLIYVCLSNLVVPVLRLSSRHNE
>AP017372.2|BAU58719.1|2239331_2240291_+|hypothetical-protein
MNKTSPHEHRIPINRKESFYTGTIFPMLAAEGGFEALRRIITEVYPASLDIPLLKKPWRQGWDMQFFTEYSLKESIVPDTPNKMFENIELSGSKETPDIVLYFYPNDTQASPLRGTLVGIEAKMFTQPSLPDLEGQISAQRQILQQMSEKLDNCDLYQLVLIPEETIKKYDEQKLSDSVQEGRFQGWLTWNSVLDAWQKANGDYASPAGLFAKDLEFALENFDSLVSEVSRSGQNCDAKLTGKAIYNGFKEGSTDFTYKIMGCSGGLNGNRLNNHIEKSEWQYQEYEVSNQHEPFNHNWFSIDDFVKKIDNRCPKSDDH
>AP017372.2|BAU58720.1|2240280_2241786_+|hypothetical-protein
MTIDLTQKASTAPRLSKSRFIAGWQCPLRLWYAVHHPELAPPPDDRQQAIFDRGHKIGELAQQRYLGGRLVAADFRHIEAAIDETNALMAKPEVPVLYEPAILHRNVLTRVDILARFASGWDIIEVKSSTRAKEVFRVDLAVQYWILRGAGVPIDRAGLLLLNRDYVYPGGEYDLQSLFRFEELTEQCQARQGWVEEQVERFQAIVAGASPPAIEPGEQCTTPYTCPFTSHCWRDREQAANPITLLPNLASSRVASLREKGIEAIEDLPPDYRLTDVQQRVRQATLSGLSWQSSGLKAALEKVSWPLFYLDFEAAMMALPPYAGMRPYDPVPFQYSCHIQRRPYGSLEHQEFLATEDGDPRTLLAESLLDTLGDSGSIIVYSGYEQATINRLAQALPDQAGRLRALIPRLVDLLAIVRNHYYHPDFRGSFSIKKVLPALVEGMDYLDMEVADGEAAGRAWQQMLASEDTAEQERLAAALRAYCRQDSLAMYRLREALMELT
>AP017372.2|BAU58721.1|2241823_2242126_-|hypothetical-protein
MPDDGTGSLPLLRHIILNDNKSSTNKLALLRTLCRIADGADGLAVVDDNDKIKLHMGLVALTWIRLFMPMLRASIPQLPKHQEAQKGWVLPETVSVTALG
>AP017372.2|BBE11146.1|2242170_2242398_+|hypothetical-protein
MQRVFVEKWFPLRHLLVQGLETDKKIILFGEWRIMLYDDGVFNEDALQELNAQIDWPLDLERYPIVHTAVRPPAT
>AP017372.2|BBE11147.1|2242497_2243277_-|hypothetical-protein
MNYTNFWIDGRSFEKARNHFRAAVADPKARPNQKVVLDLNEHAYMLGMELTHGYPFIRNDGLSMTIHDHELTPRENSYNIIDLINIRFTERALKGAYTNLVYHEEAQQFEEKLSNLNVQRREDALKFSEEVCRWGRGMRVWGRLNQHYSQSQLGEAISSWLSSVRNYDSYIDPISQGVSIRGLGVSFASKHLRLLDPSRFAVLDSVLSEGLGYALTPQGYNLFMNDLVKIKNDYLQEWRLCDIEASIFALVRQRVITTG
>AP017372.2|BBE11148.1|2243677_2243917_-|hypothetical-protein
MCLMHATEDMLYPGAELCTTLIAILLTHRQDSQWRCLVLNFRSSATLAQRGLARGAGITLIGIDITLGVSGVKDILKVQ
>AP017372.2|BBE11149.1|2244250_2244493_+|hypothetical-protein
MRAHALICFLALILYRVLRMRLKANKSEYSVERALEALESVQWHRVKINGESHTGVSVSNLQRKLFKDMEVKPPKQATTA
>AP017372.2|BBE11150.1|2244655_2244853_-|hypothetical-protein
MNPLVGLNGVVELSLEGIQKGVDILLAHQIDTVKQKERVANDRFVFTLGVSRSISSDGLRPTGTA

Crispr_ID: AP017372_8

• CRISPR_ID: AP017372_8
• CRISPR_location: 2254998-2255176
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of AP017372_8

Consensus_repeat	Method
TGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	PILER-CR
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CRISPRCasFinder

spacers of AP017372_8

>8.1|2255035|34|AP017372|PILER-CR
CCTGCGGGCGGCTTTCTTTACCTCCCTTCGGCAC
>8.2|2255106|35|AP017372|PILER-CR
TTTTTGACACCGGCTAATCGTCTACGCGATAGCCC
>8.3|2255034|35|AP017372|CRISPRCasFinder
CCTGCGGGCGGCTTTCTTTACCTCCCTTCGGCACT
>8.4|2255105|36|AP017372|CRISPRCasFinder
TTTTTGACACCGGCTAATCGTCTACGCGATAGCCCT

CRISPR arrays and Neighbor proteins around AP017372_8

CRISPR arrays

The CRISPR arrays of AP017372_8

>merge|AP017372|8|2254998-2255176|PILER-CR,CRISPRCasFinder
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACCCTGCGGGCGGCTTTCTTTACCTCCCTTCGGCACTGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACTTTTTGACACCGGCTAATCGTCTACGCGATAGCCCTGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC

>AP017372|8|5|2254998-2255176|PILER-CR
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACC	CTGCGGGCGGCTTTCTTTACCTCCCTTCGGCACT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACT	TTTTGACACCGGCTAATCGTCTACGCGATAGCCCT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC

>AP017372|8|7|2254998-2255176|CRISPRCasFinder
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CCTGCGGGCGGCTTTCTTTACCTCCCTTCGGCACT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	TTTTTGACACCGGCTAATCGTCTACGCGATAGCCCT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
AP017372.2|BAU58731.2|2249085_2249862_+|Ynd	unknown	unknown	gnl|CDD|371541
AP017372.2|BAU58746.1|2259133_2261071_+|hypothetical-protein	unknown	unknown	gnl|CDD|377008
AP017372.2|BBE11154.1|2262009_2262216_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58749.1|2263122_2264055_+|NAD-independent-protein-deacetylase-AcuC	unknown	unknown	gnl|CDD|212520
AP017372.2|BAU58733.1|2250485_2250752_+|Ync	unknown	unknown	unknown
AP017372.2|BAU58732.2|2250054_2250489_+|Ync	unknown	unknown	gnl|CDD|378065
AP017372.2|BAU58736.1|2251801_2252302_+|putative-protein-tyrosine-phosphatase	unknown	unknown	gnl|CDD|350355
AP017372.2|BBE11151.1|2257333_2257504_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58725.1|2245602_2246307_+|hypothetical-protein	unknown	unknown	gnl|CDD|227186
AP017372.2|BAU58747.1|2261526_2261805_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58748.1|2262135_2262939_+|ErfK/YbiS/YcfS/YnhG-family-protein	unknown	unknown	gnl|CDD|182294
AP017372.2|BBE11152.1|2257600_2257735_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58735.1|2251639_2251843_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58742.1|2255564_2257337_+|mobile-element-protein	unknown	unknown	gnl|CDD|376561
AP017372.2|BBE11153.1|2261142_2261535_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58729.1|2248262_2248523_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58726.1|2246306_2247005_+|hypothetical-protein	unknown	unknown	gnl|CDD|223704
AP017372.2|BAU58738.2|2253105_2253672_-|hypothetical-protein	unknown	unknown	gnl|CDD|378053
AP017372.2|BAU58745.1|2257731_2259141_+|protein-of-unknown-function-DUF262-family	unknown	unknown	gnl|CDD|377008
AP017372.2|BAU58740.1|2253796_2254180_-|hypothetical-protein	unknown	unknown	gnl|CDD|378249

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
AP017372.2|BAU58731.2|2249085_2249862_+|Ynd	gnl|CDD|371541	pfam11459, AbiEi_3, Transcriptional regulator, AbiEi antitoxin, Type IV TA system. AbiEi_3 is the cognate antitoxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	9.98446e-55
AP017372.2|BAU58746.1|2259133_2261071_+|hypothetical-protein	gnl|CDD|377008	pfam03235, DUF262, Protein of unknown function DUF262.	2.64983e-25
AP017372.2|BAU58749.1|2263122_2264055_+|NAD-independent-protein-deacetylase-AcuC	gnl|CDD|212520	cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes. AcuC (Acetoin utilization protein) is a class I deacetylase found only in bacteria and is involved in post-translational control of the acetyl-coenzyme A synthetase (AcsA). Deacetylase AcuC works in coordination with deacetylase SrtN (class III), possibly to maintain AcsA in active (deacetylated) form and let the cell grow under low concentration of acetate. B. subtilis AcuC is a member of operon acuABC; this operon is repressed by the presence of glucose and does not show induction by acetoin; acetoin is a bacterial fermentation product that can be converted to acetate via the butanediol cycle in absence of other carbon sources. Inactivation of AcuC leads to slower growth and lower cell yield under low-acetate conditions in Bacillus subtilis. In general, Class I histone deacetylases (HDACs) are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues in histone amino termini to yield a deacetylated histone (EC 3.5.1.98). Enzymes belonging to this group participate in regulation of a number of processes through protein (mostly different histones) modification (deacetylation). Class I histone deacetylases in general act via the formation of large multiprotein complexes. Members of this class are involved in cell cycle regulation, DNA damage response, embryonic development, cytokine signaling important for immune response and in posttranslational control of the acetyl coenzyme A synthetase.	3.39207e-116
AP017372.2|BAU58732.2|2250054_2250489_+|Ync	gnl|CDD|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	1.57809e-13
AP017372.2|BAU58736.1|2251801_2252302_+|putative-protein-tyrosine-phosphatase	gnl|CDD|350355	cd14505, CDKN3-like, cyclin-dependent kinase inhibitor 3 and similar proteins. This family is composed of eukaryotic cyclin-dependent kinase inhibitor 3 (CDKN3) and related archaeal and bacterial proteins. CDKN3 is also known as kinase-associated phosphatase (KAP), CDK2-associated dual-specificity phosphatase, cyclin-dependent kinase interactor 1 (CDI1), or cyclin-dependent kinase-interacting protein 2 (CIP2). It has been characterized as dual-specificity phosphatase, which function as a protein-serine/threonine phosphatase (EC 3.1.3.16) and protein-tyrosine-phosphatase (EC 3.1.3.48). It dephosphorylates CDK2 at a threonine residue in a cyclin-dependent manner, resulting in the inhibition of G1/S cell cycle progression. It also interacts with CDK1 and controls progression through mitosis by dephosphorylating CDC2. CDKN3 may also function as a tumor suppressor; its loss of function was found in a variety of cancers including glioblastoma and hepatocellular carcinoma. However, it has also been found over-expressed in many cancers such as breast, cervical, lung and prostate cancers, and may also have an oncogenic function.	5.31563e-45
AP017372.2|BAU58726.1|2246306_2247005_+|hypothetical-protein	gnl|CDD|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	5.92915e-08
AP017372.2|BAU58725.1|2245602_2246307_+|hypothetical-protein	gnl|CDD|227186	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction only].	3.24266e-06
AP017372.2|BAU58742.1|2255564_2257337_+|mobile-element-protein	gnl|CDD|376561	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain. This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, Tn3926 transposons from E-coli. The specific binding of the Tn3 transposase to DNA has been demonstrated. Sequence analysis has suggested that the invariant triad of Asp689, Asp765, Glu895 (numbering as in Tn3) may correspond to the D-D-35-E motif previously implicated in the catalysis of numerous transposases.	0
AP017372.2|BAU58748.1|2262135_2262939_+|ErfK/YbiS/YcfS/YnhG-family-protein	gnl|CDD|182294	PRK10190, PRK10190, L,D-transpeptidase; Provisional.	3.2035e-43
AP017372.2|BAU58738.2|2253105_2253672_-|hypothetical-protein	gnl|CDD|378053	pfam08808, RES, RES domain. This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.	1.12929e-22
AP017372.2|BAU58745.1|2257731_2259141_+|protein-of-unknown-function-DUF262-family	gnl|CDD|377008	pfam03235, DUF262, Protein of unknown function DUF262.	1.80949e-28
AP017372.2|BAU58740.1|2253796_2254180_-|hypothetical-protein	gnl|CDD|378249	pfam09722, DUF2384, Protein of unknown function (DUF2384). Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. The function is unknown.	4.3958e-05

Protein sequences

>AP017372.2|BAU58740.1|2253796_2254180_-|hypothetical-protein
MQQMTARKQHQLGAAGLRAYPNIARAWGLTETQAARLLGAPESTYRRWKRNPERASLDVNHLERLSLILGIHKNLHILLPREDAANSWVRRPNTNPLFAGHTPLERMLGGQVGDLVAVRQHLDGARG
>AP017372.2|BAU58738.2|2253105_2253672_-|hypothetical-protein
MNELEGLTANRLREEAGEIHLIKQEDRRYGPRWSPIMAALCYPRPSRFTDCSFGVYYCADNERTAVAETRYHRERFQAESNEPPMAVEMRVYIAELDADLLDLRGDTNLATSYLDPDSYANSQRLGAIARMHDHYGLAYPSVRDQEGGDCAAVFRPPALGPTRQGKHFEYRWDGQRITAVVELRETNY
>AP017372.2|BAU58736.1|2251801_2252302_+|putative-protein-tyrosine-phosphatase
MTLCPGKIGPGRVHPWQRKLDDDIESIVQWGASRVVTLMENSELVSFGVGDLGARIRERLGDHCWHHLPIIDGSVPSAKAEKNWEPIADDLHSCLGAGERICIHCLGGLGRTGVIACRLLVELGFSPDEALGRVRQARPGAVETKEQLDYVTRLPELPAVQKRISN
>AP017372.2|BAU58735.1|2251639_2251843_-|hypothetical-protein
MDSPGPDFARAERHPNASTAWEEDAVYTERFGSHTLLSICLPKREASIIREYENIGFGVSCMVHQAH
>AP017372.2|BAU58733.1|2250485_2250752_+|Ync
MTKTPVTLNELLLTRKKVVTDIQSRLGEDAKRFLVSLHDGAPDFDIIDRPQAANLPAVRWKILNIKKLMTENPEKHAEQLTQLEELLG
>AP017372.2|BAU58732.2|2250054_2250489_+|Ync
MDRLALSIEDAIVGAKTQLIKVGGGTTRLLARLKSAEIKVETSPVMRGVVHEPESRAVTEAVEDEFGYAEMQIAAFEDLFSGKLHAALDRQHPRDIYDIKLLYEHEGITDDLFRTFLIYIASSPRPVHELLNPNLIDLDRNLRG
>AP017372.2|BAU58731.2|2249085_2249862_+|Ynd
MPAGFLVDSAWLERHGIGRRSTYAYVKNGWLTRVHRGVFRRPAPNAPKTGVIDWKVCLLSMQYVMGYDVHVGGTSALGQHGFDHYLHLGSNVPVRVYGDAIPTWLVRLPLSAPIETRRTSLFVDRALGLTKDNKDAATILSWDWQLRISSPERAVMEAMDELPTHETFHNLDRIFESLTTLRPRTLSALLHSCKKIKVKRLFFVFADRHDHPWRKRLDAEEFNLGSGDRALVSGGRMHPRYRIMVPEDFVKPEVSDGA
>AP017372.2|BAU58729.1|2248262_2248523_+|hypothetical-protein
MYGFWQPTTYEALRARGADLELRALPPRDPAAAGRRGRVAFHVAGRRAHYLDGERFEVVAADGSRRELPREVAAEALAGAQGTDAP
>AP017372.2|BAU58726.1|2246306_2247005_+|hypothetical-protein
MQARWFSQQGRERARNSDAAAVGQQGQHLLAVLVDGAEKGPRGAELARHWADTVMQALAEASTRSQATVGARLRQAHAQLRHDFLHDIASYCMVSLDLETLAMHVWHCGDCRVGLRRPTKTRWLTTPHLLVHQPGLPSSCSPEEQERREQQLTRSLNARRFCPPENHVFSLCQDQTLLLSTDGYWQEHLEAGTPRDCLQDDASLLTLPVRPGSLAHVEQASDTDNLRYVSPA
>AP017372.2|BAU58725.1|2245602_2246307_+|hypothetical-protein
MSLFDDQRAMLRRVAEGLGTELRDQVAFVGGCTTGLLLTDAFTREQVRSTDDVDLIISVMTYAHLNRFKEALKTKGFKDPSPMDGEMPICAMKLGELRIDLIPDHDEVLGFSNHWYPLALKTAEPVSLGGDLTIRVVTPPLFIATKLEAYKGRGESDPLSSNDIEDILNLVDGRPELLDEVRAADSALQAYIAAELSELLGKDDFSYAVQSQAGDPDREALLFERLEILTGVRG
>AP017372.2|BAU58742.1|2255564_2257337_+|mobile-element-protein
MLKLRAAPAAKDVLDAIEVLRGMNSNNARKVPADAPTDFIRPRWQKIVMTDTGIDRRYYELCALSELKNALRSGDIWVQGSRQFKNFDDYLVPPTTFASLKQASELPLAVASDCDQYLHERLTLLETQLATVNRMALANELPDAIITESGLKITPLDAAVPETAQALIDQTAMILPHIKITELLLEVDEWTGFTRHFTHLKSNDPAKDKKLLLTTILADAINLGLTKMAESCPGTTYAKLAWLQAWHIRDETYGAALAELVNAQLRHSFAEHWGDGTTSSSDGQNFRTGSKAEGTGHINPKYGSSPGRTFYTHISDQYTPFHTKVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGDTKLYIPKGEAAYEALHPMIGGTLNIKRVRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLALALRELGRIERTLFILDWLQSVELRRRVHTGLNKGEARNALARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERAANALRGHGQTVDDALLQYLSPLGWEHINLTGDYLWRSSAKIGAGKFRPLRALQLP
>AP017372.2|BBE11151.1|2257333_2257504_-|hypothetical-protein
MATPYEKLKSLANAEQYLKPGVTFKQLDEIAYAICDNEAARQLNEGSSQKTEKIVR
>AP017372.2|BBE11152.1|2257600_2257735_+|hypothetical-protein
MVNRTNERAAEVSIELPLEQMGLTRTGKATYMQSAAIDDNRAGL
>AP017372.2|BAU58745.1|2257731_2259141_+|protein-of-unknown-function-DUF262-family
MTVVVASCTVAKLFSGETFEASDGTLIEGNLHLPEYQRPYRWGEAQIRRLLEDLRRYFCPPHPGSSPAHLFYLGSIILHQDGEGRLNIIDGQQRLTTMALLMWQQAPGSEPKLRYESPLSHAQIRKNQEWLKQQENWNRAWLKLERINITVVVTRSEDDAYCFFETQNTGGVRLSGPDIIKAHHLRATPRSRQDRYARLWESLGDLNPVVDAVLKARSWNALNFRHVPSRREPLSVRETVVTELAENTGEGHADVAYGLTATSRTPDGAVVQVAHADGYAMRQPLNAGINSIHYLEYFESLRRILLTNHREPDLDSFHNFYQGLIVGRQGCSYLKKLYDSCLLLYASHFGRSQLFEASLRLFRVVYAPRVTNEKTVKEATASKFVRENPVFDWILMSYTHEQCMERLRLFEVKVSAKNLGQSDDGVKKRFVQAVNEWFSLELPKDRMAEQYDDALQKAIKSTLEVVNHG
>AP017372.2|BAU58746.1|2259133_2261071_+|hypothetical-protein
MDNCVLTQVQAPAAILDEDIAFVIPSYQRPYVWPDDAVVKLFDDIFRAWQWDACSNYYIGTVLTAPISHIEGAAYELIDGQQRITTLMLIALAFRVTGQETALNPLAERGNAPRLTFAIREQVQALLGYWSGLDGYQYPGEDAVKTNPYLTRLDDALNVLKQLVGAIEKDRRIELAGYIHTNVQWVNNTMPGSMDLNRLFATMNTRGVQLEQSDILKSMLLRRISTDKSRYEAIWQACEQMDNYFERNVRQIFGGTDWSDMLPEHLRHFDPARFLLSEEQNLEAERPGSGLTISQLADSSYPDENEGSSALDLDDTVYCQSIIGFPLLLMHALRIYTARSGYADIGGRLHSERLIDSFSVLVDASETEVKEFVECLWEVRYQFDRWVVKWVERSDEDERQLRLTDINRSPSNGNWYLTRSVKKLFELVPLQSVRHFTGEHSAQYWLTPFLGLLCMETNPSENTVLDIMERIDNQLSLAEASQKQASFELLSGDVSAQRSVAAIIEYLKTPCGTKFEHYWFQKLEYLLWKRDHSQDEKVLNYRIVSRNSIEHVYAQNEEFKNEMKRDYLDAFGNLVLLNPSENSSYGYQSVNKKKADFKDRSHYNGSYDSLKLKEIFSLMGQGEWSPNLVEAHQEAMFELISCHYS
>AP017372.2|BBE11153.1|2261142_2261535_-|hypothetical-protein
MQHFRFLLELIFELLGALLVAVSLVGDLIGALSEKGKNRTLGQLQRPYSPELARAGLKVTKQSGHKGSCKPKMTGSEFESVKKLLARGVPPNHVAKALGRCTAGRRRQRMLSVRFFPFSERAPTGVSNST
>AP017372.2|BAU58747.1|2261526_2261805_+|hypothetical-protein
MLQRKLDSAHQERNQAEHERHRLEKDYASLQSQVDRHKERIEQLQAEVMQERERHQEAQELARYHQEQSQALMEVLRRGDGTGEEMEGGGYS
>AP017372.2|BBE11154.1|2262009_2262216_-|hypothetical-protein
MRIRGTKTLNAHALALSYLGESFIRLHRNVVNASDDLYLRWRLVTVQRALPVSRPRASRGWASQSRSE
>AP017372.2|BAU58748.1|2262135_2262939_+|ErfK/YbiS/YcfS/YnhG-family-protein
MKPDEALAEVAEREGVGVERLRAANPHTATENASERALRIPARHVLPDTPREGLVIDVAGMRLFHYPEETDAVEVFPISTGREGWPTPVAMKTEVAERLENPAWYPPESIRDSRAASDESGSLPRMVPPGAENPLGEHVLILEVDGYLVHGTNEPHSIGERTSHGCARMHPQDIEHLFERVKAGTPVRFVDQPFRIGRSARGEVWVESHPSAPDGSNPELDRRFVRALPDIAGEGVAINGARLIEAVNDQDGIAVRVSVGEEGAGKR
>AP017372.2|BAU58749.1|2263122_2264055_+|NAD-independent-protein-deacetylase-AcuC
MTGVPLRIATDKRLGAYHFGPGHPFGPGRMAAFLEALDELELAYEALPLAEADTATLTRFHAREYVERVQSLAGTGAPLDLGDTPAVPGIDGAAKRVVGTVAAAVDDLLAGRVRRAFVPIAGLHHGQRDRASGFCVYNDCGVALETLLAAGVAPVAYVDIDVHHGDGVYDSFETDPRVIFADIHQDGRTLFPGTGAAEAQGKGAAHGTKLNVPLPPGADDDAFVEAWERIEAHLERHQPKVIVMQCGADGLAGDPLASLRYTSKTHASAARRLRVLTERWAEGRLLALGGGGYDLSNIAAAWTAVVREIA

Crispr_ID: AP017372_9

• CRISPR_ID: AP017372_9
• CRISPR_location: 2266356-2266887
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 7 spacers
• Cas_protein_info: csx16,csx1,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7

Consensus repeat of AP017372_9

Consensus_repeat	Method
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTA	PILER-CR
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CRISPRCasFinder
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CRT

spacers of AP017372_9

>9.1|2266388|39|AP017372|PILER-CR
AGACCCTATAGTTCGTTGAAATATATCAATCGCTTCCCT
>9.2|2266459|40|AP017372|PILER-CR
AGACCTGGACCTTGACAGGATTTTGGTTGCCTACACTATC
>9.3|2266531|40|AP017372|PILER-CR
AGACGGCGTCCTTTTGGACGTAGGGCACCGCCTTCATCAC
>9.4|2266603|39|AP017372|PILER-CR
AGACGCGCACTCCGGGCTTATTTCGTCACGCTCGAGTTG
>9.5|2266674|37|AP017372|PILER-CR
AGACCCCACCAGTGCGTAAGAGTTGTCATACGCGGAT
>9.6|2266743|37|AP017372|PILER-CR
AGACAATTTTATGTTGAACCATTCCGTGTCCTGGTCC
>9.7|2266812|40|AP017372|PILER-CR
AGACAATTCCTTTCTGATAGCTGTTAACGATTCAACAGCC
>9.8|2266392|35|AP017372|CRISPRCasFinder,CRT
CCTATAGTTCGTTGAAATATATCAATCGCTTCCCT
>9.9|2266463|36|AP017372|CRISPRCasFinder,CRT
CTGGACCTTGACAGGATTTTGGTTGCCTACACTATC
>9.10|2266535|36|AP017372|CRISPRCasFinder,CRT
GGCGTCCTTTTGGACGTAGGGCACCGCCTTCATCAC
>9.11|2266607|35|AP017372|CRISPRCasFinder,CRT
GCGCACTCCGGGCTTATTTCGTCACGCTCGAGTTG
>9.12|2266678|33|AP017372|CRISPRCasFinder,CRT
CCCACCAGTGCGTAAGAGTTGTCATACGCGGAT
>9.13|2266747|33|AP017372|CRISPRCasFinder,CRT
AATTTTATGTTGAACCATTCCGTGTCCTGGTCC
>9.14|2266816|36|AP017372|CRISPRCasFinder,CRT
AATTCCTTTCTGATAGCTGTTAACGATTCAACAGCC

CRISPR arrays and Neighbor proteins around AP017372_9

CRISPR arrays

The CRISPR arrays of AP017372_9

>merge|AP017372|9|2266356-2266887|PILER-CR,CRISPRCasFinder,CRT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACCCTATAGTTCGTTGAAATATATCAATCGCTTCCCTGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACCTGGACCTTGACAGGATTTTGGTTGCCTACACTATCGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACGGCGTCCTTTTGGACGTAGGGCACCGCCTTCATCACGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACGCGCACTCCGGGCTTATTTCGTCACGCTCGAGTTGGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACCCCACCAGTGCGTAAGAGTTGTCATACGCGGATGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACAATTTTATGTTGAACCATTCCGTGTCCTGGTCCGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACAATTCCTTTCTGATAGCTGTTAACGATTCAACAGCCGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAGAGT

>AP017372|9|6|2266356-2266883|PILER-CR
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTA	AGACCCTATAGTTCGTTGAAATATATCAATCGCTTCCCT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTA	AGACCTGGACCTTGACAGGATTTTGGTTGCCTACACTATC
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTA	AGACGGCGTCCTTTTGGACGTAGGGCACCGCCTTCATCAC
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTA	AGACGCGCACTCCGGGCTTATTTCGTCACGCTCGAGTTG
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTA	AGACCCCACCAGTGCGTAAGAGTTGTCATACGCGGAT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTA	AGACAATTTTATGTTGAACCATTCCGTGTCCTGGTCC
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTA	AGACAATTCCTTTCTGATAGCTGTTAACGATTCAACAGCC
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTA

>AP017372|9|8|2266356-2266887|CRISPRCasFinder
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CCTATAGTTCGTTGAAATATATCAATCGCTTCCCT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CTGGACCTTGACAGGATTTTGGTTGCCTACACTATC
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	GGCGTCCTTTTGGACGTAGGGCACCGCCTTCATCAC
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	GCGCACTCCGGGCTTATTTCGTCACGCTCGAGTTG
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CCCACCAGTGCGTAAGAGTTGTCATACGCGGAT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	AATTTTATGTTGAACCATTCCGTGTCCTGGTCC
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	AATTCCTTTCTGATAGCTGTTAACGATTCAACAGCC
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAGAGT

>AP017372|9|3|2266356-2266887|CRT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CCTATAGTTCGTTGAAATATATCAATCGCTTCCCT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CTGGACCTTGACAGGATTTTGGTTGCCTACACTATC
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	GGCGTCCTTTTGGACGTAGGGCACCGCCTTCATCAC
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	GCGCACTCCGGGCTTATTTCGTCACGCTCGAGTTG
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CCCACCAGTGCGTAAGAGTTGTCATACGCGGAT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	AATTTTATGTTGAACCATTCCGTGTCCTGGTCC
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	AATTCCTTTCTGATAGCTGTTAACGATTCAACAGCC
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAGAGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
AP017372.2|BAU58746.1|2259133_2261071_+|hypothetical-protein	unknown	unknown	gnl|CDD|377008
AP017372.2|BAU58761.1|2273873_2274869_+|CRISPR-associated-RAMP-protein	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl|CDD|187794
AP017372.2|BAU58758.1|2269976_2272607_+|CRISPR-associated-protein	cas10	cd09680_cas10_CAS-III	gnl|CDD|187811
AP017372.2|BAU58760.1|2273055_2273859_+|CRISPR-associated-RAMP-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|187815
AP017372.2|BAU58749.1|2263122_2264055_+|NAD-independent-protein-deacetylase-AcuC	unknown	unknown	gnl|CDD|212520
AP017372.2|BAU58762.1|2274869_2276369_+|CRISPR-associated-protein	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl|CDD|187793
AP017372.2|BAU58757.2|2269236_2269980_+|CRISPR-repeat-RNA-endoribonuclease-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl|CDD|337605
AP017372.2|BAU58745.1|2257731_2259141_+|protein-of-unknown-function-DUF262-family	unknown	unknown	gnl|CDD|377008
AP017372.2|BAU58751.1|2264730_2265273_-|peptide-methionine-sulfoxide-reductase-MsrA	unknown	unknown	gnl|CDD|237597
AP017372.2|BAU58750.1|2264182_2264623_-|hypothetical-protein	unknown	unknown	gnl|CDD|377317
AP017372.2|BAU58747.1|2261526_2261805_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58754.1|2267478_2268606_+|CRISPR-associated-protein-NE0113	csx1	pfam09623_csx1_CAS-III	gnl|CDD|187872
AP017372.2|BAU58752.1|2265315_2265723_-|UPF0047-protein-Bsu-YugU	unknown	unknown	gnl|CDD|223509
AP017372.2|BAU58753.2|2267048_2267339_-|hypothetical-protein	csx16	pfam09652_csx16_CAS-I:CAS-III	gnl|CDD|370601
AP017372.2|BAU58759.1|2272603_2273053_+|CRISPR-associated-protein	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl|CDD|367635
AP017372.2|BBE11153.1|2261142_2261535_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58748.1|2262135_2262939_+|ErfK/YbiS/YcfS/YnhG-family-protein	unknown	unknown	gnl|CDD|182294
AP017372.2|BBE11155.1|2268630_2268822_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BBE11154.1|2262009_2262216_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BBE11156.1|2276549_2276783_+|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
AP017372.2|BAU58759.1|2272603_2273053_+|CRISPR-associated-protein	csm2gr11	pfam03750_csm2gr11_CAS-III-A	2.9e-26	86.9	0.0
AP017372.2|BAU58754.1|2267478_2268606_+|CRISPR-associated-protein-NE0113	csx1	pfam09623_csx1_CAS-III	9.6e-80	262.2	0.0
AP017372.2|BAU58760.1|2273055_2273859_+|CRISPR-associated-RAMP-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	3.7e-67	220.9	0.0
AP017372.2|BAU58753.2|2267048_2267339_-|hypothetical-protein	csx16	pfam09652_csx16_CAS-I:CAS-III	6.2e-38	123.7	0.0
AP017372.2|BAU58761.1|2273873_2274869_+|CRISPR-associated-RAMP-protein	csm4gr5	COG1567_csm4gr5_CAS-III-A	2.6e-29	97.1	0.0
AP017372.2|BAU58757.2|2269236_2269980_+|CRISPR-repeat-RNA-endoribonuclease-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	3.5e-71	234.8	0.6
AP017372.2|BAU58762.1|2274869_2276369_+|CRISPR-associated-protein	csm5gr7	cd09662_csm5gr7_CAS-III-A	1.2e-19	65.5	0.0
AP017372.2|BAU58758.1|2269976_2272607_+|CRISPR-associated-protein	cas10	cd09680_cas10_CAS-III	2.9e-119	394.1	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
AP017372.2|BAU58746.1|2259133_2261071_+|hypothetical-protein	gnl|CDD|377008	pfam03235, DUF262, Protein of unknown function DUF262.	2.64983e-25
AP017372.2|BAU58761.1|2273873_2274869_+|CRISPR-associated-RAMP-protein	gnl|CDD|187794	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	5.9536e-26
AP017372.2|BAU58758.1|2269976_2272607_+|CRISPR-associated-protein	gnl|CDD|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	7.95833e-114
AP017372.2|BAU58760.1|2273055_2273859_+|CRISPR-associated-RAMP-Csm3	gnl|CDD|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.25432e-74
AP017372.2|BAU58749.1|2263122_2264055_+|NAD-independent-protein-deacetylase-AcuC	gnl|CDD|212520	cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes. AcuC (Acetoin utilization protein) is a class I deacetylase found only in bacteria and is involved in post-translational control of the acetyl-coenzyme A synthetase (AcsA). Deacetylase AcuC works in coordination with deacetylase SrtN (class III), possibly to maintain AcsA in active (deacetylated) form and let the cell grow under low concentration of acetate. B. subtilis AcuC is a member of operon acuABC; this operon is repressed by the presence of glucose and does not show induction by acetoin; acetoin is a bacterial fermentation product that can be converted to acetate via the butanediol cycle in absence of other carbon sources. Inactivation of AcuC leads to slower growth and lower cell yield under low-acetate conditions in Bacillus subtilis. In general, Class I histone deacetylases (HDACs) are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues in histone amino termini to yield a deacetylated histone (EC 3.5.1.98). Enzymes belonging to this group participate in regulation of a number of processes through protein (mostly different histones) modification (deacetylation). Class I histone deacetylases in general act via the formation of large multiprotein complexes. Members of this class are involved in cell cycle regulation, DNA damage response, embryonic development, cytokine signaling important for immune response and in posttranslational control of the acetyl coenzyme A synthetase.	3.39207e-116
AP017372.2|BAU58762.1|2274869_2276369_+|CRISPR-associated-protein	gnl|CDD|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.40793e-20
AP017372.2|BAU58757.2|2269236_2269980_+|CRISPR-repeat-RNA-endoribonuclease-Cas6	gnl|CDD|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	0.00236056
AP017372.2|BAU58745.1|2257731_2259141_+|protein-of-unknown-function-DUF262-family	gnl|CDD|377008	pfam03235, DUF262, Protein of unknown function DUF262.	1.80949e-28
AP017372.2|BAU58751.1|2264730_2265273_-|peptide-methionine-sulfoxide-reductase-MsrA	gnl|CDD|237597	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase.	4.6219e-92
AP017372.2|BAU58748.1|2262135_2262939_+|ErfK/YbiS/YcfS/YnhG-family-protein	gnl|CDD|182294	PRK10190, PRK10190, L,D-transpeptidase; Provisional.	3.2035e-43
AP017372.2|BAU58754.1|2267478_2268606_+|CRISPR-associated-protein-NE0113	gnl|CDD|187872	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family.	2.55477e-89
AP017372.2|BAU58752.1|2265315_2265723_-|UPF0047-protein-Bsu-YugU	gnl|CDD|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	3.13581e-48
AP017372.2|BAU58753.2|2267048_2267339_-|hypothetical-protein	gnl|CDD|370601	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548). This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas (CRISPR-associated) genes.	8.56222e-41
AP017372.2|BAU58759.1|2272603_2273053_+|CRISPR-associated-protein	gnl|CDD|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.55281e-27
AP017372.2|BAU58750.1|2264182_2264623_-|hypothetical-protein	gnl|CDD|377317	pfam04343, DUF488, Protein of unknown function, DUF488. This family includes several proteins of uncharacterized function.	1.13293e-22

Protein sequences

>AP017372.2|BAU58752.1|2265315_2265723_-|UPF0047-protein-Bsu-YugU
MRKTITVTTHQREELVDITEPIRRAVAEAEVSDGLLALYVQGATAAIMIQENWDASVPRDAVNLLQQLVPRGVWEHDSQDGNGDSHLKAGLIGPSETIPIINSKMGLSTWQGIFLACEFDGPRRERTVVCTLIAM
>AP017372.2|BAU58751.1|2264730_2265273_-|peptide-methionine-sulfoxide-reductase-MsrA
MSRSITVGGGCFWCIEGVFQQLPAVHQAISGYAGGESPDPSYREVCSGRTGHAEVVQVNFDPEQVEERALMELFFAIHDPTLHNRQGPDVGSQYRSIILYADKEQRQTAEAVIKEIGAAGEYSAPIVTELVPLTTFYPAEEMHQRYYEAAPEAPYCRSMIAPKIAKARERFPRLFDGWAN
>AP017372.2|BAU58750.1|2264182_2264623_-|hypothetical-protein
MHTLYTTGYERTDLDTFIVTLQRASVATVIDVRASPHSRRREFAFKHLARELPGAGIGYESWPVLGAPQAARDAAKVGDAQRFYQLYASHLEEPKPKDALHSLAERAVTEAVALLCYERDPAECHRLLIAERLERSHKLASHHLAG
>AP017372.2|BAU58749.1|2263122_2264055_+|NAD-independent-protein-deacetylase-AcuC
MTGVPLRIATDKRLGAYHFGPGHPFGPGRMAAFLEALDELELAYEALPLAEADTATLTRFHAREYVERVQSLAGTGAPLDLGDTPAVPGIDGAAKRVVGTVAAAVDDLLAGRVRRAFVPIAGLHHGQRDRASGFCVYNDCGVALETLLAAGVAPVAYVDIDVHHGDGVYDSFETDPRVIFADIHQDGRTLFPGTGAAEAQGKGAAHGTKLNVPLPPGADDDAFVEAWERIEAHLERHQPKVIVMQCGADGLAGDPLASLRYTSKTHASAARRLRVLTERWAEGRLLALGGGGYDLSNIAAAWTAVVREIA
>AP017372.2|BAU58748.1|2262135_2262939_+|ErfK/YbiS/YcfS/YnhG-family-protein
MKPDEALAEVAEREGVGVERLRAANPHTATENASERALRIPARHVLPDTPREGLVIDVAGMRLFHYPEETDAVEVFPISTGREGWPTPVAMKTEVAERLENPAWYPPESIRDSRAASDESGSLPRMVPPGAENPLGEHVLILEVDGYLVHGTNEPHSIGERTSHGCARMHPQDIEHLFERVKAGTPVRFVDQPFRIGRSARGEVWVESHPSAPDGSNPELDRRFVRALPDIAGEGVAINGARLIEAVNDQDGIAVRVSVGEEGAGKR
>AP017372.2|BBE11154.1|2262009_2262216_-|hypothetical-protein
MRIRGTKTLNAHALALSYLGESFIRLHRNVVNASDDLYLRWRLVTVQRALPVSRPRASRGWASQSRSE
>AP017372.2|BAU58747.1|2261526_2261805_+|hypothetical-protein
MLQRKLDSAHQERNQAEHERHRLEKDYASLQSQVDRHKERIEQLQAEVMQERERHQEAQELARYHQEQSQALMEVLRRGDGTGEEMEGGGYS
>AP017372.2|BBE11153.1|2261142_2261535_-|hypothetical-protein
MQHFRFLLELIFELLGALLVAVSLVGDLIGALSEKGKNRTLGQLQRPYSPELARAGLKVTKQSGHKGSCKPKMTGSEFESVKKLLARGVPPNHVAKALGRCTAGRRRQRMLSVRFFPFSERAPTGVSNST
>AP017372.2|BAU58746.1|2259133_2261071_+|hypothetical-protein
MDNCVLTQVQAPAAILDEDIAFVIPSYQRPYVWPDDAVVKLFDDIFRAWQWDACSNYYIGTVLTAPISHIEGAAYELIDGQQRITTLMLIALAFRVTGQETALNPLAERGNAPRLTFAIREQVQALLGYWSGLDGYQYPGEDAVKTNPYLTRLDDALNVLKQLVGAIEKDRRIELAGYIHTNVQWVNNTMPGSMDLNRLFATMNTRGVQLEQSDILKSMLLRRISTDKSRYEAIWQACEQMDNYFERNVRQIFGGTDWSDMLPEHLRHFDPARFLLSEEQNLEAERPGSGLTISQLADSSYPDENEGSSALDLDDTVYCQSIIGFPLLLMHALRIYTARSGYADIGGRLHSERLIDSFSVLVDASETEVKEFVECLWEVRYQFDRWVVKWVERSDEDERQLRLTDINRSPSNGNWYLTRSVKKLFELVPLQSVRHFTGEHSAQYWLTPFLGLLCMETNPSENTVLDIMERIDNQLSLAEASQKQASFELLSGDVSAQRSVAAIIEYLKTPCGTKFEHYWFQKLEYLLWKRDHSQDEKVLNYRIVSRNSIEHVYAQNEEFKNEMKRDYLDAFGNLVLLNPSENSSYGYQSVNKKKADFKDRSHYNGSYDSLKLKEIFSLMGQGEWSPNLVEAHQEAMFELISCHYS
>AP017372.2|BAU58745.1|2257731_2259141_+|protein-of-unknown-function-DUF262-family
MTVVVASCTVAKLFSGETFEASDGTLIEGNLHLPEYQRPYRWGEAQIRRLLEDLRRYFCPPHPGSSPAHLFYLGSIILHQDGEGRLNIIDGQQRLTTMALLMWQQAPGSEPKLRYESPLSHAQIRKNQEWLKQQENWNRAWLKLERINITVVVTRSEDDAYCFFETQNTGGVRLSGPDIIKAHHLRATPRSRQDRYARLWESLGDLNPVVDAVLKARSWNALNFRHVPSRREPLSVRETVVTELAENTGEGHADVAYGLTATSRTPDGAVVQVAHADGYAMRQPLNAGINSIHYLEYFESLRRILLTNHREPDLDSFHNFYQGLIVGRQGCSYLKKLYDSCLLLYASHFGRSQLFEASLRLFRVVYAPRVTNEKTVKEATASKFVRENPVFDWILMSYTHEQCMERLRLFEVKVSAKNLGQSDDGVKKRFVQAVNEWFSLELPKDRMAEQYDDALQKAIKSTLEVVNHG
>AP017372.2|BAU58753.2|2267048_2267339_-|hypothetical-protein
MTTWFVSRHPGAAAWAERQGIEVDRFVEHLDWAAVERGDAVIGTLPVHIAAMICQRGAAYWHLSLELPLDMRGKELSEDDMELAGARIERFHVEKK
>AP017372.2|BAU58754.1|2267478_2268606_+|CRISPR-associated-protein-NE0113
MATEGKNTLLCIAGLTPQVVTETLYAITIESQGALPDRLEIITTTEGRRRLLLTLLSKDGGHGYLDRFYQDYGLDRANLAFDESCVHVIHGLDGEPLADIVTEQDNCAAADLIHERIRQLTQQTQKLHVSIAGGRKTMGFYAGYSLSLYARPSDRLSHVLVNAPFESHPSFFYPPPQPLTLQLPGRNDIISTAEAQVRLADLPFVRLREELGEDLPYAGLSFSEAVERAQQVITPAQLALDLAERTANLQGQVIKLSPTHFVWLTWFADRARREKPPLRFDHEAAKELERYIDWLDGSNSPLHESLHSAREELESEGCSNYFERTRSRLNKALAERSGLPARAVARYQIHACSNRPQSTYALRLTPEQIRMVGEP
>AP017372.2|BBE11155.1|2268630_2268822_-|hypothetical-protein
MLIHKMLKAYPPVVPQHQEGLPGMHVCLERLANMDPEGHNIHSIVLRMHEPILIGQMVAQQQL
>AP017372.2|BAU58757.2|2269236_2269980_+|CRISPR-repeat-RNA-endoribonuclease-Cas6
MVKWQARYPKAPHPFVLGLSLNSGGQVSAGEKLSLGVTLLGRATGTIPYWVHVLQAAGEQGLGPQRVPLALETVHQECGPGDGDWALVYLPGETFEPQPAQHPKPPPVPNRVRLRLHTPLRVRRGGRHVSAQELAFHDLFRTLLRRLSMLSQFHGPGPLEGDPRTLVEIARGIAWQKTDWRWHDWQRFSARQGRRVPMGGVIGEALLDGNDLVFIWSLLWFGQWVHASRGASMGLGRYEIISEDAIS
>AP017372.2|BAU58758.1|2269976_2272607_+|CRISPR-associated-protein
MSTEQIKTSWRTQDHVVLGALIHDIGKLFERGDLLDSYRNDEDMLQAYCPFQIRGRYFSHKHAVHTLAWAERLAERIPALDPEHLGIGTDHWLNLAARHHKPSSALEALIKRADDLASQERDPLGIDARFISRKVRLEPILERVTLEADPGRARTTETRVPLTPMEPGSPYFPEHAHKMDPPMNWDREKCAWVSQQDLGDAYARLGQDLLGQLEQLPTAEAPPSAIIGTLLTLLERYTAQVPSATNTAHPDISLFDHLRVTAAIAEGLYTYHQDQGDGLENVEKRDQTAKWALVCGDLSGIQRFIYRITSRGAARALRGRSLYLQLLTDGLASRMRRELDLHAPAQIYASGGKFFLLIPSTRVDQARQVAATINDELLAPFQGQLRLGLGTAHLAPNHFRAGHMGERWQATIDDLHRDRTRPWAGRMAHPPEKEDQDFFAPESPSEDGHCHACGRDDPPGDICDRGEGRRLCQQCNDLEQLGLAIRHASAITWHEPGTQRRGWELPGTGRVIRLPSREDPESLPLAAGDVLERLEGWPELAEARPGIAYSARFIGRWQESCGESELEELAASSQGIKRLGILRMDVDNLGQIFARGLRFGSTTETESSADMGSLSRTATLSRQLHWFFSTHLTRLLEQAEAPAQIMYAGGDDLFIVGAWHAMPELAVRIQHDLQRFASHNPVFSLSGGIELVGGRYPIGHAAELAGIQEEHAKGHRRSDKEGQTRDKCALAFLHTPVGWEQMEHVEGVREQLERFLEATGNRAVLGYLRRAVADMEGLQRRYAQGRWSDTELHALVEAQRWRWQLLSRLRRLRRRHQHHTEAVGAIDRLQEVFIEQQQPHKPPDPHLLGLPGRWVELKYRQSGNYLPDRGEEVHAP
>AP017372.2|BAU58759.1|2272603_2273053_+|CRISPR-associated-protein
MNAANANHPRHKQQGPSGSDPATIRGFIEDDQADQLVATAERLGQDMGKQVSTSQVRNIFSSIKRLEMREQQHSPSGDAPLSPNVRRELLLLKPRLAYATARENRLKPLHDAVTTALDVVAQQGDQNALRRLSAFYEAIVAYHQYHGGK
>AP017372.2|BAU58760.1|2273055_2273859_+|CRISPR-associated-RAMP-Csm3
MTDVSQYATLQSKVFLRGELRAETGLHIGGSETGLGIGGADSVVVRDPLDHTPYVPGSSLRGKLRSLLERARGLEGANGNAEGGFALGKNNAGVPGRDPSTALAQLFGITADQNARGPSRLIVRDARLTPDSYQALMDAPGTDMPMTEVKTEVSIDRITSAAMPRQLERVPAGARFDFELVITVMVADDRQQWLNLILEGLDLLQDDTLGGNGSRGYGRISVDLRELLERDSQAYREGREAIPITDLDIPPALQGHPEATSPSTATA
>AP017372.2|BAU58761.1|2273873_2274869_+|CRISPR-associated-RAMP-protein
MRCYRLHFRAPLHIDDRGTGYYEASDPFVRSDTVSAALLTTWGQLDPENATARAAKPPFRVSSAMPWLEGTPLLPRPVPHRAAPAPQGDPALAKVTKGVQWLSPRLWHRIWHEGWQQALHPDTVCTPQKEIALARDEASEPSPAWAQERRPRLNVDRITDGPVEGQLFEFGRIHFLPSAGLYLLAEHADETARQGFEAALSLLGDTGLGADRNAGNGQFTWEPAADFQERLGVRQTEPGESGVLVSLANPGLSERQWAGDERSAYDITTRGGWIANYGIRRARVRMLTEGSFLSVTIQGRVLDVTPRALASELPHPIYRDGRALMLRPEEG
>AP017372.2|BAU58762.1|2274869_2276369_+|CRISPR-associated-protein
MTDIRGARPETENVCIEVVTPLHIGDGESLIKDADFVQERPGHPFRVIDKAGLERRLAEQGGDEVEAYLAHQEMPGLQDLVTLAGGASHAPGYDLPPHEPGHAPASPEIRSTIKDAWLRPLLPGSALKGALRTAWIAQHLRDQVIQPRAQELNKPPRFAAARFLGRLTSAPAHAGSGRPGPNSDAFRVLRPRDAQAPRSALSWVDIRIAKSPRDGKVGWHVTTRSGRRQVDDWSQATALNAEALAPGTVLATQISWDGLLCANESAWRATGNEHIALPRGFCELRDVLIRHARHQIQREKKDLFAWELKAAYRTWQQLEQQLEQAIQQGGAPLRLGFGIGWLGMTGDWLSDETFHTVLAETHWKVKQPHRFPKTRRLVVERGQPQAPLGWVILWPADSGPPPTGQDPEEQKDREDPGDAGHPWVNTKIAELQKAHNSSLEEVLRGKKLAQACQLIDDLETRSEVLADIRRRWQERGWWNDPRGRAMKQARQIYGELTGE
>AP017372.2|BBE11156.1|2276549_2276783_+|hypothetical-protein
MRECARIREGSMFNVTGPTASPGPGTAKRSLALLGYNRYDREDSQGVFKNENRVQMPAYVKYSGTSISVKPPCRYLF

Crispr_ID: AP017372_10

• CRISPR_ID: AP017372_10
• CRISPR_location: 2276804-2277052
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 3 spacers
• Cas_protein_info: csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,csx1,csx16,cas2,cas1

Consensus repeat of AP017372_10

Consensus_repeat	Method
AGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	PILER-CR
AGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CRT

spacers of AP017372_10

>10.1|2276841|33|AP017372|PILER-CR,CRT
GTTTCCTGAGCGTTGGCTCCGCAGTCGCAGCAG
>10.2|2276911|34|AP017372|PILER-CR,CRT
CCCCGTGACATAGAACATTGCAATTGGTTGAGTA
>10.3|2276982|34|AP017372|CRT
GATCTGTATCTTGAATGGGCACTCCCACCCGACC

CRISPR arrays and Neighbor proteins around AP017372_10

CRISPR arrays

The CRISPR arrays of AP017372_10

>merge|AP017372|10|2276804-2277052|PILER-CR,CRT
AGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACGTTTCCTGAGCGTTGGCTCCGCAGTCGCAGCAGAGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACCCCCGTGACATAGAACATTGCAATTGGTTGAGTAAGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACGATCTGTATCTTGAATGGGCACTCCCACCCGACCAGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAAAC

>AP017372|10|7|2276804-2276981|PILER-CR
AGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	GTTTCCTGAGCGTTGGCTCCGCAGTCGCAGCAG
AGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CCCCGTGACATAGAACATTGCAATTGGTTGAGTA
AGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC

>AP017372|10|4|2276804-2277052|CRT
AGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	GTTTCCTGAGCGTTGGCTCCGCAGTCGCAGCAG
AGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CCCCGTGACATAGAACATTGCAATTGGTTGAGTA
AGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	GATCTGTATCTTGAATGGGCACTCCCACCCGACC
AGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
AP017372.2|BAU58765.1|2279594_2280182_-|hypothetical-protein	unknown	unknown	gnl|CDD|226597
AP017372.2|BAU58761.1|2273873_2274869_+|CRISPR-associated-RAMP-protein	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl|CDD|187794
AP017372.2|BAU58758.1|2269976_2272607_+|CRISPR-associated-protein	cas10	cd09680_cas10_CAS-III	gnl|CDD|187811
AP017372.2|BAU58760.1|2273055_2273859_+|CRISPR-associated-RAMP-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|187815
AP017372.2|BAU58768.1|2282827_2283628_+|hypothetical-protein	unknown	unknown	gnl|CDD|376633
AP017372.2|BBE11156.1|2276549_2276783_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58762.1|2274869_2276369_+|CRISPR-associated-protein	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl|CDD|187793
AP017372.2|BAU58757.2|2269236_2269980_+|CRISPR-repeat-RNA-endoribonuclease-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl|CDD|337605
AP017372.2|BAU58763.1|2277221_2278202_+|CRISPR-repeat-RNA-endoribonuclease-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl|CDD|337605
AP017372.2|BAU58764.1|2278248_2279460_+|CRISPR-associated-protein-TM1812	csx1	cd09732_csx1_CAS-III	gnl|CDD|187799
AP017372.2|BBE11157.1|2284102_2284288_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BBE11158.1|2286300_2286477_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58754.1|2267478_2268606_+|CRISPR-associated-protein-NE0113	csx1	pfam09623_csx1_CAS-III	gnl|CDD|187872
AP017372.2|BAU58753.2|2267048_2267339_-|hypothetical-protein	csx16	pfam09652_csx16_CAS-I:CAS-III	gnl|CDD|370601
AP017372.2|BAU58770.2|2284270_2285029_+|CRISPR-associated-protein-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|376633
AP017372.2|BAU58759.1|2272603_2273053_+|CRISPR-associated-protein	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl|CDD|367635
AP017372.2|BAU58769.2|2283620_2283932_+|CRISPR-associated-protein-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl|CDD|378256
AP017372.2|BAU58766.1|2280181_2282353_-|adenosine-deaminase	csx1	cd09741_csx1_CAS-III	gnl|CDD|236480
AP017372.2|BBE11155.1|2268630_2268822_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58767.1|2282532_2282814_+|hypothetical-protein	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl|CDD|187856

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
AP017372.2|BAU58761.1|2273873_2274869_+|CRISPR-associated-RAMP-protein	csm4gr5	COG1567_csm4gr5_CAS-III-A	2.6e-29	97.1	0.0
AP017372.2|BAU58764.1|2278248_2279460_+|CRISPR-associated-protein-TM1812	csx1	cd09732_csx1_CAS-III	9.6e-47	154.7	0.0
AP017372.2|BAU58760.1|2273055_2273859_+|CRISPR-associated-RAMP-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	3.7e-67	220.9	0.0
AP017372.2|BAU58769.2|2283620_2283932_+|CRISPR-associated-protein-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	9.3e-21	68.8	0.0
AP017372.2|BAU58762.1|2274869_2276369_+|CRISPR-associated-protein	csm5gr7	cd09662_csm5gr7_CAS-III-A	1.2e-19	65.5	0.0
AP017372.2|BAU58757.2|2269236_2269980_+|CRISPR-repeat-RNA-endoribonuclease-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	3.5e-71	234.8	0.6
AP017372.2|BAU58758.1|2269976_2272607_+|CRISPR-associated-protein	cas10	cd09680_cas10_CAS-III	2.9e-119	394.1	0.0
AP017372.2|BAU58754.1|2267478_2268606_+|CRISPR-associated-protein-NE0113	csx1	pfam09623_csx1_CAS-III	9.6e-80	262.2	0.0
AP017372.2|BAU58766.1|2280181_2282353_-|adenosine-deaminase	csx1	cd09741_csx1_CAS-III	6.3e-13	43.5	0.3
AP017372.2|BAU58753.2|2267048_2267339_-|hypothetical-protein	csx16	pfam09652_csx16_CAS-I:CAS-III	6.2e-38	123.7	0.0
AP017372.2|BAU58770.2|2284270_2285029_+|CRISPR-associated-protein-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	1.8e-46	153.4	0.0
AP017372.2|BAU58759.1|2272603_2273053_+|CRISPR-associated-protein	csm2gr11	pfam03750_csm2gr11_CAS-III-A	2.9e-26	86.9	0.0
AP017372.2|BAU58767.1|2282532_2282814_+|hypothetical-protein	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	3.7e-13	44.4	0.0
AP017372.2|BAU58763.1|2277221_2278202_+|CRISPR-repeat-RNA-endoribonuclease-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	7.3e-76	250.2	0.2

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
AP017372.2|BAU58765.1|2279594_2280182_-|hypothetical-protein	gnl|CDD|226597	COG4112, COG4112, Predicted phosphoesterase (MutT family) [General function prediction only].	2.34312e-23
AP017372.2|BAU58761.1|2273873_2274869_+|CRISPR-associated-RAMP-protein	gnl|CDD|187794	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	5.9536e-26
AP017372.2|BAU58764.1|2278248_2279460_+|CRISPR-associated-protein-TM1812	gnl|CDD|187799	cd09668, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TM1812 family.	3.09173e-34
AP017372.2|BAU58760.1|2273055_2273859_+|CRISPR-associated-RAMP-Csm3	gnl|CDD|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.25432e-74
AP017372.2|BAU58768.1|2282827_2283628_+|hypothetical-protein	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	0.00202765
AP017372.2|BAU58762.1|2274869_2276369_+|CRISPR-associated-protein	gnl|CDD|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.40793e-20
AP017372.2|BAU58757.2|2269236_2269980_+|CRISPR-repeat-RNA-endoribonuclease-Cas6	gnl|CDD|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	0.00236056
AP017372.2|BAU58758.1|2269976_2272607_+|CRISPR-associated-protein	gnl|CDD|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	7.95833e-114
AP017372.2|BAU58754.1|2267478_2268606_+|CRISPR-associated-protein-NE0113	gnl|CDD|187872	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family.	2.55477e-89
AP017372.2|BAU58753.2|2267048_2267339_-|hypothetical-protein	gnl|CDD|370601	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548). This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas (CRISPR-associated) genes.	8.56222e-41
AP017372.2|BAU58770.2|2284270_2285029_+|CRISPR-associated-protein-Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	2.59671e-53
AP017372.2|BAU58759.1|2272603_2273053_+|CRISPR-associated-protein	gnl|CDD|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.55281e-27
AP017372.2|BAU58769.2|2283620_2283932_+|CRISPR-associated-protein-Cas2	gnl|CDD|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	7.26681e-17
AP017372.2|BAU58766.1|2280181_2282353_-|adenosine-deaminase	gnl|CDD|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	1.68612e-58
AP017372.2|BAU58763.1|2277221_2278202_+|CRISPR-repeat-RNA-endoribonuclease-Cas6	gnl|CDD|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	3.30464e-07
AP017372.2|BAU58767.1|2282532_2282814_+|hypothetical-protein	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.08801e-07

Protein sequences

>AP017372.2|BBE11156.1|2276549_2276783_+|hypothetical-protein
MRECARIREGSMFNVTGPTASPGPGTAKRSLALLGYNRYDREDSQGVFKNENRVQMPAYVKYSGTSISVKPPCRYLF
>AP017372.2|BAU58762.1|2274869_2276369_+|CRISPR-associated-protein
MTDIRGARPETENVCIEVVTPLHIGDGESLIKDADFVQERPGHPFRVIDKAGLERRLAEQGGDEVEAYLAHQEMPGLQDLVTLAGGASHAPGYDLPPHEPGHAPASPEIRSTIKDAWLRPLLPGSALKGALRTAWIAQHLRDQVIQPRAQELNKPPRFAAARFLGRLTSAPAHAGSGRPGPNSDAFRVLRPRDAQAPRSALSWVDIRIAKSPRDGKVGWHVTTRSGRRQVDDWSQATALNAEALAPGTVLATQISWDGLLCANESAWRATGNEHIALPRGFCELRDVLIRHARHQIQREKKDLFAWELKAAYRTWQQLEQQLEQAIQQGGAPLRLGFGIGWLGMTGDWLSDETFHTVLAETHWKVKQPHRFPKTRRLVVERGQPQAPLGWVILWPADSGPPPTGQDPEEQKDREDPGDAGHPWVNTKIAELQKAHNSSLEEVLRGKKLAQACQLIDDLETRSEVLADIRRRWQERGWWNDPRGRAMKQARQIYGELTGE
>AP017372.2|BAU58761.1|2273873_2274869_+|CRISPR-associated-RAMP-protein
MRCYRLHFRAPLHIDDRGTGYYEASDPFVRSDTVSAALLTTWGQLDPENATARAAKPPFRVSSAMPWLEGTPLLPRPVPHRAAPAPQGDPALAKVTKGVQWLSPRLWHRIWHEGWQQALHPDTVCTPQKEIALARDEASEPSPAWAQERRPRLNVDRITDGPVEGQLFEFGRIHFLPSAGLYLLAEHADETARQGFEAALSLLGDTGLGADRNAGNGQFTWEPAADFQERLGVRQTEPGESGVLVSLANPGLSERQWAGDERSAYDITTRGGWIANYGIRRARVRMLTEGSFLSVTIQGRVLDVTPRALASELPHPIYRDGRALMLRPEEG
>AP017372.2|BAU58760.1|2273055_2273859_+|CRISPR-associated-RAMP-Csm3
MTDVSQYATLQSKVFLRGELRAETGLHIGGSETGLGIGGADSVVVRDPLDHTPYVPGSSLRGKLRSLLERARGLEGANGNAEGGFALGKNNAGVPGRDPSTALAQLFGITADQNARGPSRLIVRDARLTPDSYQALMDAPGTDMPMTEVKTEVSIDRITSAAMPRQLERVPAGARFDFELVITVMVADDRQQWLNLILEGLDLLQDDTLGGNGSRGYGRISVDLRELLERDSQAYREGREAIPITDLDIPPALQGHPEATSPSTATA
>AP017372.2|BAU58759.1|2272603_2273053_+|CRISPR-associated-protein
MNAANANHPRHKQQGPSGSDPATIRGFIEDDQADQLVATAERLGQDMGKQVSTSQVRNIFSSIKRLEMREQQHSPSGDAPLSPNVRRELLLLKPRLAYATARENRLKPLHDAVTTALDVVAQQGDQNALRRLSAFYEAIVAYHQYHGGK
>AP017372.2|BAU58758.1|2269976_2272607_+|CRISPR-associated-protein
MSTEQIKTSWRTQDHVVLGALIHDIGKLFERGDLLDSYRNDEDMLQAYCPFQIRGRYFSHKHAVHTLAWAERLAERIPALDPEHLGIGTDHWLNLAARHHKPSSALEALIKRADDLASQERDPLGIDARFISRKVRLEPILERVTLEADPGRARTTETRVPLTPMEPGSPYFPEHAHKMDPPMNWDREKCAWVSQQDLGDAYARLGQDLLGQLEQLPTAEAPPSAIIGTLLTLLERYTAQVPSATNTAHPDISLFDHLRVTAAIAEGLYTYHQDQGDGLENVEKRDQTAKWALVCGDLSGIQRFIYRITSRGAARALRGRSLYLQLLTDGLASRMRRELDLHAPAQIYASGGKFFLLIPSTRVDQARQVAATINDELLAPFQGQLRLGLGTAHLAPNHFRAGHMGERWQATIDDLHRDRTRPWAGRMAHPPEKEDQDFFAPESPSEDGHCHACGRDDPPGDICDRGEGRRLCQQCNDLEQLGLAIRHASAITWHEPGTQRRGWELPGTGRVIRLPSREDPESLPLAAGDVLERLEGWPELAEARPGIAYSARFIGRWQESCGESELEELAASSQGIKRLGILRMDVDNLGQIFARGLRFGSTTETESSADMGSLSRTATLSRQLHWFFSTHLTRLLEQAEAPAQIMYAGGDDLFIVGAWHAMPELAVRIQHDLQRFASHNPVFSLSGGIELVGGRYPIGHAAELAGIQEEHAKGHRRSDKEGQTRDKCALAFLHTPVGWEQMEHVEGVREQLERFLEATGNRAVLGYLRRAVADMEGLQRRYAQGRWSDTELHALVEAQRWRWQLLSRLRRLRRRHQHHTEAVGAIDRLQEVFIEQQQPHKPPDPHLLGLPGRWVELKYRQSGNYLPDRGEEVHAP
>AP017372.2|BAU58757.2|2269236_2269980_+|CRISPR-repeat-RNA-endoribonuclease-Cas6
MVKWQARYPKAPHPFVLGLSLNSGGQVSAGEKLSLGVTLLGRATGTIPYWVHVLQAAGEQGLGPQRVPLALETVHQECGPGDGDWALVYLPGETFEPQPAQHPKPPPVPNRVRLRLHTPLRVRRGGRHVSAQELAFHDLFRTLLRRLSMLSQFHGPGPLEGDPRTLVEIARGIAWQKTDWRWHDWQRFSARQGRRVPMGGVIGEALLDGNDLVFIWSLLWFGQWVHASRGASMGLGRYEIISEDAIS
>AP017372.2|BBE11155.1|2268630_2268822_-|hypothetical-protein
MLIHKMLKAYPPVVPQHQEGLPGMHVCLERLANMDPEGHNIHSIVLRMHEPILIGQMVAQQQL
>AP017372.2|BAU58754.1|2267478_2268606_+|CRISPR-associated-protein-NE0113
MATEGKNTLLCIAGLTPQVVTETLYAITIESQGALPDRLEIITTTEGRRRLLLTLLSKDGGHGYLDRFYQDYGLDRANLAFDESCVHVIHGLDGEPLADIVTEQDNCAAADLIHERIRQLTQQTQKLHVSIAGGRKTMGFYAGYSLSLYARPSDRLSHVLVNAPFESHPSFFYPPPQPLTLQLPGRNDIISTAEAQVRLADLPFVRLREELGEDLPYAGLSFSEAVERAQQVITPAQLALDLAERTANLQGQVIKLSPTHFVWLTWFADRARREKPPLRFDHEAAKELERYIDWLDGSNSPLHESLHSAREELESEGCSNYFERTRSRLNKALAERSGLPARAVARYQIHACSNRPQSTYALRLTPEQIRMVGEP
>AP017372.2|BAU58753.2|2267048_2267339_-|hypothetical-protein
MTTWFVSRHPGAAAWAERQGIEVDRFVEHLDWAAVERGDAVIGTLPVHIAAMICQRGAAYWHLSLELPLDMRGKELSEDDMELAGARIERFHVEKK
>AP017372.2|BAU58763.1|2277221_2278202_+|CRISPR-repeat-RNA-endoribonuclease-Cas6
MIPLLPLRLHYRAEQQVKLPFFPGSIWRSALGYRLRRASCVTGAERCDGCLAATHCAYGQLFETPTQAVTARTHPYSEEVSAEKLLKNYPKAPHPFVLSPVSPGGEYSAGSEIEVELILLNPALRWMPTLLPVLHNLQLKRSKLKLQRISLVNTDGLAASGADNKINVTAEELLKINELATPQHPPHPPEFITIRVQQHPLRLRRKNRYVGSEQFDPGVFISALLRRASMLNSITSQATETDFRYLTQLGRSIGLNRSELHWFDWHRHSTPQDRRVPMGGLLGEFQLDSVPEEIWPWVWLGQWLHVGKGAVMGMGRYQLAEYAADN
>AP017372.2|BAU58764.1|2278248_2279460_+|CRISPR-associated-protein-TM1812
MHTLVSFIGRTRRPEQGYERIAYNFPDGAVQNGIAFIGNGVAQYTKPDRLVILGTSGSMWDQVIVDYPEVKLGEEKDLALSDSVDNQATTAEQLSEVAAALSETASFTVDLRLIPETPGMEQTWEILHTLVDATSGSDRLTIDITHGFRHLPMVAMMAALYRRTLDDSQSFSVDALWYAQLPPGAKEAEMHNIVGILALADWMEAIQHSRTTGDLSRVAELLREEAPEIAENLAQGSFKETIHQGTQARGPYRKARKTLSETTLPGPAGLFQPILEDQISWVDGQHLHVRQAAHARSALERKDYLRAALYGYEAFVTQLTREHHSIEQLDHHEKRKAASDAFAESCQGRSKEDPKCRAFHQLRQLRNALAHGDQPKHADVQAALHSPQALHKLLSEALDRLLP
>AP017372.2|BAU58765.1|2279594_2280182_-|hypothetical-protein
MGKGKVLVVPRQDLPDSWLPHEGALRSTWGEVKEVISTAGTLWLERSQAEYDHAYKQLIAYVRLRDSQGSYAVYKRQGSEQRLHGLWSVGLGGHVDEGDCSAADDSDAAKALERAAYRELEEELNGFTPERLEFLGLINEEKTEVGLVHLGMVWEAVAGIDRPKPGAELGEMGWRSPGQLPEDELEYWSRLAMRL
>AP017372.2|BAU58766.1|2280181_2282353_-|adenosine-deaminase
MNTLVATLGTTWQVLPEIFAYTNPGAAPLYEHSSAAGDIQEERKDYGLRPVQSLWIITTEGGIEEWQNLCQWQQYLPEPIEMRCWYIKGIEELFTPGENRAMADLIYRVALHARLHTRRNNSCLYFALAGGRKTMSAELQQAAHLFGADALLHVVDRFAKQEREQFNSLSFQSLCQPLPKEFADSIRPLVTNGDLPGNEALLNSFQELDCEFEERFPLPGFGDQQRFSIESVPAQDDLHAWVKERQKRAEALLANYRLQVSAHEKLGNFRALYGLSPQTVEKLRQTRLGCDQHKQEQELAWLRRLPKAELHCHLGGILDSAGMIRVAEAMADDLAAEDRRNREFAIWRRDMETAIRSGNIPYLKSLLPGGSLSGKPLRDNFSVTQPLSVAALLYAFRDNPQLLDSLLYGVYQQPSQFTAVGIESYEELGNLQGSGLLQSEKTLRAAMAELGAICRRERIGYLELRCSPLNYVRGDLDKDDVVRILVEEAERIEDCDVRLLFIASRHRDPEQTKEHIELALHWFDNSKSFRERFVGFDLAGAEHAMQPAAMREYFLPLHERVVRMTIHAGEGERAENIWEAVYELSADRIGHGLTLKEYPDLIDRFRDRRIALEMCPSSNRQIRGYYHPHYSPQEERKYPLSSYLEAGLRVSINTDNPGISRTSLSEEFLTAAQMTPGGLSAWHILQIIRNGYQAAFCGQEQRRSHLIEAEKKIIEAVQDGAIE
>AP017372.2|BAU58767.1|2282532_2282814_+|hypothetical-protein
MARKLFLAAYDVRCPQRLTKSVRVIKGYASGGQKSAYECWLTQAEQEELHLQMANVIDPRVDQFALLPLEPRKPLVTLGAAEEPADPDFFYFG
>AP017372.2|BAU58768.1|2282827_2283628_+|hypothetical-protein
MSHAEPRTIYINADRVNVRHEDSALRVNRPGKAATYIPIVRIGRAVIRGCGGEELLGACLALARAGVVIHFQDGNGQQSAWLQPSGEPKNQPAQELAALIGEHTALGPYHWWRDAQRRHCWSMVFRHSPKGDFHSGCKRLEKYLRKLSPLHWIDHEIEALSRDLRSWLQAEIHRRGWNSVCRVLAAQGEDLESELYRCLYIPLLWRFVRWRRQQSLEISEYKRLEFVELQLANPIPRQLYRHLHALTEEYYVSWHKMSKNKVQADE
>AP017372.2|BAU58769.2|2283620_2283932_+|CRISPR-associated-protein-Cas2
MSEHPVNHLVCYDIRDPRRLRRVHRKMKEWGTPLQYSVFYCRLVPSARQQLAEVLRHEIDERVDDVRIYALQNRAQGTYQGPAPLPVGLILPGLYLKEQFPGQ
>AP017372.2|BBE11157.1|2284102_2284288_-|hypothetical-protein
MALAAHERTAILTASGHKGNPYAGRPKVREHIAGEFHVADNHKALQKVQWYGARLFIRFSD
>AP017372.2|BAU58770.2|2284270_2285029_+|CRISPR-associated-protein-Cas1
MRSESHGDSTRRLGQYELATTQPNDPVWAIKLIRLRLASQHRLLHQALIHRPEQRQPIFCALEEIDRMRSHLRHSSQSLTLEQSRGYEGSATAAFFRGYTSLFPESLGFKSRNRRPPRDPVNAILSLGYALAHGDALRATMASGLDPAIGFLHQPAWGRDSLACDLTEIARSRVEQLTWHLFANRSLRAGDFSTDSDGEGVRLRKSARCNFFACWEAHAKLHRRWQKRAANTIASHCLHLGKSLNPGNSEYD
>AP017372.2|BBE11158.1|2286300_2286477_+|hypothetical-protein
MAHQEDSDTDRPTAPVKLSTWMAIDSQRILERAESALDDPELLRTKRYYCTDSWRLAR

Crispr_ID: AP017372_11

• CRISPR_ID: AP017372_11
• CRISPR_location: 2285423-2285815
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 5 spacers
• Cas_protein_info: cas1,cas2,csx1,cas6

Consensus repeat of AP017372_11

Consensus_repeat	Method
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	PILER-CR
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CRISPRCasFinder
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CRT

spacers of AP017372_11

>11.1|2285459|35|AP017372|PILER-CR,CRISPRCasFinder,CRT
CTGTTCTGTTCCCCTTGGTTGAGTATCATTCTGCT
>11.2|2285530|38|AP017372|PILER-CR,CRISPRCasFinder,CRT
GTTTCGATCAGCGGGTCATCAAAACCCTTCCGGCGAAT
>11.3|2285604|35|AP017372|PILER-CR,CRISPRCasFinder,CRT
CGGCTTCCGTCTGAGCGACTTCCCGCTCCATCTCC
>11.4|2285675|34|AP017372|PILER-CR,CRISPRCasFinder,CRT
GCCATATCATCGTCAGTATCCTCCCTGAAGCCTA
>11.5|2285745|35|AP017372|PILER-CR,CRISPRCasFinder,CRT
TCCAACTCTTTGAGGACCTTGCTTGGGTTGAATTT

CRISPR arrays and Neighbor proteins around AP017372_11

CRISPR arrays

The CRISPR arrays of AP017372_11

>merge|AP017372|11|2285423-2285815|PILER-CR,CRISPRCasFinder,CRT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACCTGTTCTGTTCCCCTTGGTTGAGTATCATTCTGCTGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACGTTTCGATCAGCGGGTCATCAAAACCCTTCCGGCGAATGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACCGGCTTCCGTCTGAGCGACTTCCCGCTCCATCTCCGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACGCCATATCATCGTCAGTATCCTCCCTGAAGCCTAGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGACTCCAACTCTTTGAGGACCTTGCTTGGGTTGAATTTGTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC

>AP017372|11|8|2285423-2285815|PILER-CR
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CTGTTCTGTTCCCCTTGGTTGAGTATCATTCTGCT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	GTTTCGATCAGCGGGTCATCAAAACCCTTCCGGCGAAT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CGGCTTCCGTCTGAGCGACTTCCCGCTCCATCTCC
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	GCCATATCATCGTCAGTATCCTCCCTGAAGCCTA
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	TCCAACTCTTTGAGGACCTTGCTTGGGTTGAATTT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC

>AP017372|11|9|2285423-2285815|CRISPRCasFinder
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CTGTTCTGTTCCCCTTGGTTGAGTATCATTCTGCT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	GTTTCGATCAGCGGGTCATCAAAACCCTTCCGGCGAAT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CGGCTTCCGTCTGAGCGACTTCCCGCTCCATCTCC
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	GCCATATCATCGTCAGTATCCTCCCTGAAGCCTA
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	TCCAACTCTTTGAGGACCTTGCTTGGGTTGAATTT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC

>AP017372|11|5|2285423-2285815|CRT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CTGTTCTGTTCCCCTTGGTTGAGTATCATTCTGCT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	GTTTCGATCAGCGGGTCATCAAAACCCTTCCGGCGAAT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	CGGCTTCCGTCTGAGCGACTTCCCGCTCCATCTCC
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	GCCATATCATCGTCAGTATCCTCCCTGAAGCCTA
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC	TCCAACTCTTTGAGGACCTTGCTTGGGTTGAATTT
GTCTGAATCTGGCCCTGTTTGAGAAGGGATTAAGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
AP017372.2|BAU58765.1|2279594_2280182_-|hypothetical-protein	unknown	unknown	gnl|CDD|226597
AP017372.2|BBE11160.1|2291015_2291252_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58764.1|2278248_2279460_+|CRISPR-associated-protein-TM1812	csx1	cd09732_csx1_CAS-III	gnl|CDD|187799
AP017372.2|BAU58768.1|2282827_2283628_+|hypothetical-protein	unknown	unknown	gnl|CDD|376633
AP017372.2|BBE11156.1|2276549_2276783_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58776.1|2288135_2289080_+|transcriptional-regulator	unknown	unknown	gnl|CDD|223656
AP017372.2|BAU58778.1|2289512_2290355_-|hypothetical-protein	unknown	unknown	gnl|CDD|197231
AP017372.2|BBE11159.1|2290781_2290958_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58777.1|2289160_2289373_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58783.1|2291382_2292354_-|3'-5'-exoribonuclease-Bsu-YhaM	unknown	unknown	gnl|CDD|377859
AP017372.2|BAU58766.1|2280181_2282353_-|adenosine-deaminase	csx1	cd09741_csx1_CAS-III	gnl|CDD|236480
AP017372.2|BAU58770.2|2284270_2285029_+|CRISPR-associated-protein-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|376633
AP017372.2|BAU58780.2|2290580_2290847_-|ribonucleotide-reductase-of-class-III	unknown	unknown	gnl|CDD|274164
AP017372.2|BBE11158.1|2286300_2286477_+|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58769.2|2283620_2283932_+|CRISPR-associated-protein-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl|CDD|378256
AP017372.2|BAU58767.1|2282532_2282814_+|hypothetical-protein	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl|CDD|187856
AP017372.2|BAU58775.1|2287123_2288041_-|cobalt-zinc-cadmium-resistance-protein	unknown	unknown	gnl|CDD|226474
AP017372.2|BAU58763.1|2277221_2278202_+|CRISPR-repeat-RNA-endoribonuclease-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl|CDD|337605
AP017372.2|BBE11157.1|2284102_2284288_-|hypothetical-protein	unknown	unknown	unknown
AP017372.2|BAU58774.1|2286555_2286876_-|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
AP017372.2|BAU58766.1|2280181_2282353_-|adenosine-deaminase	csx1	cd09741_csx1_CAS-III	6.3e-13	43.5	0.3
AP017372.2|BAU58769.2|2283620_2283932_+|CRISPR-associated-protein-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	9.3e-21	68.8	0.0
AP017372.2|BAU58770.2|2284270_2285029_+|CRISPR-associated-protein-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	1.8e-46	153.4	0.0
AP017372.2|BAU58767.1|2282532_2282814_+|hypothetical-protein	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	3.7e-13	44.4	0.0
AP017372.2|BAU58763.1|2277221_2278202_+|CRISPR-repeat-RNA-endoribonuclease-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	7.3e-76	250.2	0.2
AP017372.2|BAU58764.1|2278248_2279460_+|CRISPR-associated-protein-TM1812	csx1	cd09732_csx1_CAS-III	9.6e-47	154.7	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
AP017372.2|BAU58765.1|2279594_2280182_-|hypothetical-protein	gnl|CDD|226597	COG4112, COG4112, Predicted phosphoesterase (MutT family) [General function prediction only].	2.34312e-23
AP017372.2|BAU58764.1|2278248_2279460_+|CRISPR-associated-protein-TM1812	gnl|CDD|187799	cd09668, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TM1812 family.	3.09173e-34
AP017372.2|BAU58768.1|2282827_2283628_+|hypothetical-protein	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	0.00202765
AP017372.2|BAU58776.1|2288135_2289080_+|transcriptional-regulator	gnl|CDD|223656	COG0583, LysR, Transcriptional regulator [Transcription].	6.44928e-33
AP017372.2|BAU58778.1|2289512_2290355_-|hypothetical-protein	gnl|CDD|197231	cd09133, PLDc_unchar5, Putative catalytic domain of uncharacterized hypothetical proteins with one or two copies of the HKD motif. Putative catalytic domain of uncharacterized hypothetical proteins with similarity to phospholipase D (PLD, EC 3.1.4.4). PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze transphosphatidylation of phospholipids to acceptor alcohols. Members of this subfamily contain one or two copies of the HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the PLD superfamily.	4.48119e-25
AP017372.2|BAU58783.1|2291382_2292354_-|3'-5'-exoribonuclease-Bsu-YhaM	gnl|CDD|377859	pfam07514, TraI_2, Putative helicase. Some members of this family have been annotated as helicases.	0.000453982
AP017372.2|BAU58766.1|2280181_2282353_-|adenosine-deaminase	gnl|CDD|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	1.68612e-58
AP017372.2|BAU58770.2|2284270_2285029_+|CRISPR-associated-protein-Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	2.59671e-53
AP017372.2|BAU58769.2|2283620_2283932_+|CRISPR-associated-protein-Cas2	gnl|CDD|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	7.26681e-17
AP017372.2|BAU58767.1|2282532_2282814_+|hypothetical-protein	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.08801e-07
AP017372.2|BAU58775.1|2287123_2288041_-|cobalt-zinc-cadmium-resistance-protein	gnl|CDD|226474	COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	2.9778e-64
AP017372.2|BAU58763.1|2277221_2278202_+|CRISPR-repeat-RNA-endoribonuclease-Cas6	gnl|CDD|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	3.30464e-07
AP017372.2|BAU58780.2|2290580_2290847_-|ribonucleotide-reductase-of-class-III	gnl|CDD|274164	TIGR02495, RADICAL-ACTIVATING_ENZYME, anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG, which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism, Protein fate, Protein modification and repair].	1.27816e-22

Protein sequences

>AP017372.2|BAU58770.2|2284270_2285029_+|CRISPR-associated-protein-Cas1
MRSESHGDSTRRLGQYELATTQPNDPVWAIKLIRLRLASQHRLLHQALIHRPEQRQPIFCALEEIDRMRSHLRHSSQSLTLEQSRGYEGSATAAFFRGYTSLFPESLGFKSRNRRPPRDPVNAILSLGYALAHGDALRATMASGLDPAIGFLHQPAWGRDSLACDLTEIARSRVEQLTWHLFANRSLRAGDFSTDSDGEGVRLRKSARCNFFACWEAHAKLHRRWQKRAANTIASHCLHLGKSLNPGNSEYD
>AP017372.2|BBE11157.1|2284102_2284288_-|hypothetical-protein
MALAAHERTAILTASGHKGNPYAGRPKVREHIAGEFHVADNHKALQKVQWYGARLFIRFSD
>AP017372.2|BAU58769.2|2283620_2283932_+|CRISPR-associated-protein-Cas2
MSEHPVNHLVCYDIRDPRRLRRVHRKMKEWGTPLQYSVFYCRLVPSARQQLAEVLRHEIDERVDDVRIYALQNRAQGTYQGPAPLPVGLILPGLYLKEQFPGQ
>AP017372.2|BAU58768.1|2282827_2283628_+|hypothetical-protein
MSHAEPRTIYINADRVNVRHEDSALRVNRPGKAATYIPIVRIGRAVIRGCGGEELLGACLALARAGVVIHFQDGNGQQSAWLQPSGEPKNQPAQELAALIGEHTALGPYHWWRDAQRRHCWSMVFRHSPKGDFHSGCKRLEKYLRKLSPLHWIDHEIEALSRDLRSWLQAEIHRRGWNSVCRVLAAQGEDLESELYRCLYIPLLWRFVRWRRQQSLEISEYKRLEFVELQLANPIPRQLYRHLHALTEEYYVSWHKMSKNKVQADE
>AP017372.2|BAU58767.1|2282532_2282814_+|hypothetical-protein
MARKLFLAAYDVRCPQRLTKSVRVIKGYASGGQKSAYECWLTQAEQEELHLQMANVIDPRVDQFALLPLEPRKPLVTLGAAEEPADPDFFYFG
>AP017372.2|BAU58766.1|2280181_2282353_-|adenosine-deaminase
MNTLVATLGTTWQVLPEIFAYTNPGAAPLYEHSSAAGDIQEERKDYGLRPVQSLWIITTEGGIEEWQNLCQWQQYLPEPIEMRCWYIKGIEELFTPGENRAMADLIYRVALHARLHTRRNNSCLYFALAGGRKTMSAELQQAAHLFGADALLHVVDRFAKQEREQFNSLSFQSLCQPLPKEFADSIRPLVTNGDLPGNEALLNSFQELDCEFEERFPLPGFGDQQRFSIESVPAQDDLHAWVKERQKRAEALLANYRLQVSAHEKLGNFRALYGLSPQTVEKLRQTRLGCDQHKQEQELAWLRRLPKAELHCHLGGILDSAGMIRVAEAMADDLAAEDRRNREFAIWRRDMETAIRSGNIPYLKSLLPGGSLSGKPLRDNFSVTQPLSVAALLYAFRDNPQLLDSLLYGVYQQPSQFTAVGIESYEELGNLQGSGLLQSEKTLRAAMAELGAICRRERIGYLELRCSPLNYVRGDLDKDDVVRILVEEAERIEDCDVRLLFIASRHRDPEQTKEHIELALHWFDNSKSFRERFVGFDLAGAEHAMQPAAMREYFLPLHERVVRMTIHAGEGERAENIWEAVYELSADRIGHGLTLKEYPDLIDRFRDRRIALEMCPSSNRQIRGYYHPHYSPQEERKYPLSSYLEAGLRVSINTDNPGISRTSLSEEFLTAAQMTPGGLSAWHILQIIRNGYQAAFCGQEQRRSHLIEAEKKIIEAVQDGAIE
>AP017372.2|BAU58765.1|2279594_2280182_-|hypothetical-protein
MGKGKVLVVPRQDLPDSWLPHEGALRSTWGEVKEVISTAGTLWLERSQAEYDHAYKQLIAYVRLRDSQGSYAVYKRQGSEQRLHGLWSVGLGGHVDEGDCSAADDSDAAKALERAAYRELEEELNGFTPERLEFLGLINEEKTEVGLVHLGMVWEAVAGIDRPKPGAELGEMGWRSPGQLPEDELEYWSRLAMRL
>AP017372.2|BAU58764.1|2278248_2279460_+|CRISPR-associated-protein-TM1812
MHTLVSFIGRTRRPEQGYERIAYNFPDGAVQNGIAFIGNGVAQYTKPDRLVILGTSGSMWDQVIVDYPEVKLGEEKDLALSDSVDNQATTAEQLSEVAAALSETASFTVDLRLIPETPGMEQTWEILHTLVDATSGSDRLTIDITHGFRHLPMVAMMAALYRRTLDDSQSFSVDALWYAQLPPGAKEAEMHNIVGILALADWMEAIQHSRTTGDLSRVAELLREEAPEIAENLAQGSFKETIHQGTQARGPYRKARKTLSETTLPGPAGLFQPILEDQISWVDGQHLHVRQAAHARSALERKDYLRAALYGYEAFVTQLTREHHSIEQLDHHEKRKAASDAFAESCQGRSKEDPKCRAFHQLRQLRNALAHGDQPKHADVQAALHSPQALHKLLSEALDRLLP
>AP017372.2|BAU58763.1|2277221_2278202_+|CRISPR-repeat-RNA-endoribonuclease-Cas6
MIPLLPLRLHYRAEQQVKLPFFPGSIWRSALGYRLRRASCVTGAERCDGCLAATHCAYGQLFETPTQAVTARTHPYSEEVSAEKLLKNYPKAPHPFVLSPVSPGGEYSAGSEIEVELILLNPALRWMPTLLPVLHNLQLKRSKLKLQRISLVNTDGLAASGADNKINVTAEELLKINELATPQHPPHPPEFITIRVQQHPLRLRRKNRYVGSEQFDPGVFISALLRRASMLNSITSQATETDFRYLTQLGRSIGLNRSELHWFDWHRHSTPQDRRVPMGGLLGEFQLDSVPEEIWPWVWLGQWLHVGKGAVMGMGRYQLAEYAADN
>AP017372.2|BBE11156.1|2276549_2276783_+|hypothetical-protein
MRECARIREGSMFNVTGPTASPGPGTAKRSLALLGYNRYDREDSQGVFKNENRVQMPAYVKYSGTSISVKPPCRYLF
>AP017372.2|BBE11158.1|2286300_2286477_+|hypothetical-protein
MAHQEDSDTDRPTAPVKLSTWMAIDSQRILERAESALDDPELLRTKRYYCTDSWRLAR
>AP017372.2|BAU58774.1|2286555_2286876_-|hypothetical-protein
MLLDEGAEQGPEVRVCCRPSGVSVCTATYRYPDTPEGLLEAQGDFEAFDDEQAFEVARQMFVQMAAKGACDAHQQVADVVIIPDPAAMEVRELDLALANFSQQIIQ
>AP017372.2|BAU58775.1|2287123_2288041_-|cobalt-zinc-cadmium-resistance-protein
MKEFLSRENTSLTVSVIIAALFAAAGIGLGLWMDSLMILFDGAYSLISLVLSMLALYVARLVRQPGNRHFPFGYAALEPLVIAVKGVTITLLCLVSLASALHALLTGGSQIDLDIAIAFTMIGLIACFSCTVYLRWSLARNESGLVAADFEQWRMDTVLSVAILLGFAAAYALERTAWADWAVYADPAMVALVAGYFIWVPLRMTSAAVRELVLAAPPAAMREEVLQATSDLGLPSEAVRMTKVGPYLVLELLVTPSEHTSPEALRFGLYRRLAHIEARPVVLMRASSGADGSWPWLDTPGERPW
>AP017372.2|BAU58776.1|2288135_2289080_+|transcriptional-regulator
MRIEQIESVLAVVESGSVAAAARRLGQSRTTVSTAISALEDELGVTLFERSGNRLELSPVGGAILTDCRRLQQVADQIRSRCLHHLSGAESRLCIARDDALPESLWRELLRRLKERYPQTSVSVYVAPPQELPALVERQSVDVAYGLIPPSLSFGYHHLREIADVLMHTVAAAEHPLARMPRVTQDDLVLHTEVTLAYMGTSTLVAESPETANYLAFTQFEIMRDVVMEGSGWADLPLPLIAEPLNRGELRVIRHPEATWWMTLSALETDQAHGRPVVTWMGNALEACFTQWGLAEPAVSTPAVSADLNEQKEP
>AP017372.2|BAU58777.1|2289160_2289373_-|hypothetical-protein
MNDRDYFAAHTYVSWQDAENVLRNAGNRKPSVDDVIAARARMRYAEADAMLALRAESSEVEGSLSDNSSG
>AP017372.2|BAU58778.1|2289512_2290355_-|hypothetical-protein
MSALNWQAFIALTILAGFLLPLVFISYKKALQVGLGVVLFWLAWTLGLSALFVGYSLSGQLASFQLTLIVLVGLAGVATVYYYNRWKECSARLLEENEALRTSMRDLQDNFSAAAPAKGVRPTRLVRGTKQHRQELLQQVRSAQKRIIILSGWVTRYGFDNTMRRALRNAAKRGVKIYIGWGYKSRQEVAQSSGEATPAEKGLIELARNQKDSMTLAHFKNHSKLLLVDSACTIGSFNWLSNAFSVNDELSVIIEDPGFVEEMWTSVSKDIKRNAISEAL
>AP017372.2|BAU58780.2|2290580_2290847_-|ribonucleotide-reductase-of-class-III
MQPAIFDAVKAVRDLGFKVVLHTAGSYPQLLQEALPWVDWVAMDIKGEWAHYPEVTGAANSAEKARESVEAVKASGVAYELRVLEGVG
>AP017372.2|BBE11159.1|2290781_2290958_+|hypothetical-protein
MQHDFKTKITHRLYSIKNSRLHGRLTSGEDHRIKLTLATAQQLLQICPPQLIHPASWH
>AP017372.2|BBE11160.1|2291015_2291252_-|hypothetical-protein
MVSGSVPPKSSGTVSRFRHFPAGAHQARLVIETLHAGGVDNFDVLLRGSAGYPPQLYDAEHPLALLYCGGRKDLLASP
>AP017372.2|BAU58783.1|2291382_2292354_-|3'-5'-exoribonuclease-Bsu-YhaM
MKLIKFTPEKADVPWSGEYRVAQVNPRIRMVNLHELELEDCSGSLKVLYLAPMDEFGQPCPPWEGSVVRVTVTLTQALHGGWYNRVDKLEQIDEYSTLQLLPHRLCPVPGLLYRLYEVVNREITNPALRRFLERVFADQKRTRAFVSKPASVDCHHVEPGGLLKHSLQIVHGLDMLTWGHQNGVSRQCLLVSALLHDLGKVARDVLGMLPFQAREHASLNKLLLEKELSLLKEEDLEAWLLLHYMFSAIEGITDGNRVPGVGLLLALDRFSAAEDASRRAFESLPRYRQIASLKPSNGGPSRSFYRPRSEALQLGERCAGAVM

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
AP017372_6	6.1|2199827|37|AP017372|CRISPRCasFinder	2199827-2199863	37	AP017372.2	478561-478597	0	1.0
AP017372_6	6.1|2199827|37|AP017372|CRISPRCasFinder	2199827-2199863	37	AP017372.2	871648-871684	2	0.946

1. spacer 6.1|2199827|37|AP017372|CRISPRCasFinder matches to position: 478561-478597, mismatch: 0, identity: 1.0

ggggcgggtggtggcgccggcgaagttttagaggtgc	CRISPR spacer
ggggcgggtggtggcgccggcgaagttttagaggtgc	Protospacer
*************************************

2. spacer 6.1|2199827|37|AP017372|CRISPRCasFinder matches to position: 871648-871684, mismatch: 2, identity: 0.946

ggggcgggtggtggcgccggcgaagttttagaggtgc	CRISPR spacer
ggggcagatggtggcgccggcgaagttttagaggtgc	Protospacer
*****.*.*****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
AP017372_4	4.9|760599|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	760599-760630	32	NZ_CP032687	Rhizobium sp. CCGE531 plasmid pRCCGE531b, complete sequence	159105-159136	7	0.781
AP017372_4	4.9|760599|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	760599-760630	32	NZ_CP032692	Rhizobium sp. CCGE532 plasmid pRCCGE532b, complete sequence	425982-426013	7	0.781
AP017372_4	4.9|760599|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	760599-760630	32	NC_020061	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899b, complete sequence	159137-159168	7	0.781
AP017372_5	5.1|761987|32|AP017372|CRISPRCasFinder,CRT	761987-762018	32	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	247056-247087	7	0.781
AP017372_5	5.1|761987|32|AP017372|CRISPRCasFinder,CRT	761987-762018	32	NZ_CP009112	Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence	402167-402198	7	0.781
AP017372_5	5.9|762475|32|AP017372|CRISPRCasFinder,CRT	762475-762506	32	NZ_CP045721	Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence	180184-180215	7	0.781
AP017372_5	5.9|762475|32|AP017372|CRISPRCasFinder,CRT	762475-762506	32	NZ_CP022517	Pantoea vagans strain FBS135 plasmid pPant1, complete sequence	206637-206668	7	0.781
AP017372_5	5.14|762780|32|AP017372|CRISPRCasFinder,CRT	762780-762811	32	NZ_KY349138	Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence	49120-49151	7	0.781
AP017372_5	5.29|763696|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	763696-763727	32	MK504443	Lactobacillus phage 521B, complete genome	31167-31198	7	0.781
AP017372_5	5.35|762474|33|AP017372|PILER-CR	762474-762506	33	NZ_CP045721	Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence	180183-180215	7	0.788
AP017372_5	5.35|762474|33|AP017372|PILER-CR	762474-762506	33	NZ_CP022517	Pantoea vagans strain FBS135 plasmid pPant1, complete sequence	206637-206669	7	0.788
AP017372_4	4.3|760233|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	760233-760264	32	NZ_CP041653	Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence	122375-122406	8	0.75
AP017372_4	4.9|760599|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	760599-760630	32	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	1308792-1308823	8	0.75
AP017372_5	5.10|762536|32|AP017372|CRISPRCasFinder,CRT	762536-762567	32	MN586006	Mycobacterium phage Bachome, complete genome	46095-46126	8	0.75
AP017372_5	5.10|762536|32|AP017372|CRISPRCasFinder,CRT	762536-762567	32	NZ_CP021777	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0053 plasmid unitig_2, complete sequence	15741-15772	8	0.75
AP017372_5	5.11|762597|32|AP017372|CRISPRCasFinder,CRT	762597-762628	32	NZ_CP054609	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed1, complete sequence	467359-467390	8	0.75
AP017372_5	5.11|762597|32|AP017372|CRISPRCasFinder,CRT	762597-762628	32	MK675901	Shewanella phage S0112, complete genome	29865-29896	8	0.75
AP017372_5	5.21|763208|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	763208-763239	32	KX961385	Bordetella virus LK3, complete genome	10463-10494	8	0.75
AP017372_5	5.21|763208|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	763208-763239	32	KY000220	Bordetella phage FP1, complete genome	46123-46154	8	0.75
AP017372_5	5.21|763208|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	763208-763239	32	KY000221	Bordetella phage CN1, complete genome	45629-45660	8	0.75
AP017372_5	5.21|763208|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	763208-763239	32	NC_047877	Bordetella phage CN2, complete genome	47895-47926	8	0.75
AP017372_5	5.22|763269|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	763269-763300	32	MG757154	Streptomyces phage Bing, complete genome	10964-10995	8	0.75
AP017372_5	5.24|763391|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	763391-763422	32	NZ_CP015043	Rhodovulum sp. P5 plasmid pRGUI04, complete sequence	45717-45748	8	0.75
AP017372_5	5.26|763513|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	763513-763544	32	NC_028795	Enterobacter phage E-3, complete genome	2696-2727	8	0.75
AP017372_5	5.26|763513|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	763513-763544	32	NC_016974	Providencia stuartii plasmid pMR0211, complete sequence	149759-149790	8	0.75
AP017372_5	5.37|762596|33|AP017372|PILER-CR	762596-762628	33	MK675901	Shewanella phage S0112, complete genome	29864-29896	8	0.758
AP017372_4	4.1|760111|32|AP017372|CRISPRCasFinder,CRT	760111-760142	32	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	303921-303952	9	0.719
AP017372_4	4.2|760172|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	760172-760203	32	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	51753-51784	9	0.719
AP017372_4	4.8|760538|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	760538-760569	32	NZ_CP015203	Rhodococcus sp. 008 plasmid pR8L1, complete sequence	672277-672308	9	0.719
AP017372_5	5.1|761987|32|AP017372|CRISPRCasFinder,CRT	761987-762018	32	NC_013858	Azospirillum sp. B510 plasmid pAB510d, complete sequence	272189-272220	9	0.719
AP017372_5	5.12|762658|32|AP017372|CRISPRCasFinder,CRT	762658-762689	32	MN032972	Leviviridae sp. isolate H2_Rhizo_Litter_7_scaffold_10692 sequence	627-658	9	0.719
AP017372_5	5.12|762658|32|AP017372|CRISPRCasFinder,CRT	762658-762689	32	MN033187	Leviviridae sp. isolate H2_Rhizo_Litter_49_scaffold_9067 RNA-dependent RNA polymerase (H2RhizoLitter499067_000001) gene, complete cds; and hypothetical protein (H2RhizoLitter499067_000002) gene, partial cds	578-609	9	0.719
AP017372_5	5.14|762780|32|AP017372|CRISPRCasFinder,CRT	762780-762811	32	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	1456123-1456154	9	0.719
AP017372_5	5.14|762780|32|AP017372|CRISPRCasFinder,CRT	762780-762811	32	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1643147-1643178	9	0.719
AP017372_5	5.14|762780|32|AP017372|CRISPRCasFinder,CRT	762780-762811	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	498224-498255	9	0.719
AP017372_5	5.14|762780|32|AP017372|CRISPRCasFinder,CRT	762780-762811	32	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1643282-1643313	9	0.719
AP017372_5	5.14|762780|32|AP017372|CRISPRCasFinder,CRT	762780-762811	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	377406-377437	9	0.719
AP017372_5	5.14|762780|32|AP017372|CRISPRCasFinder,CRT	762780-762811	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1523646-1523677	9	0.719
AP017372_5	5.14|762780|32|AP017372|CRISPRCasFinder,CRT	762780-762811	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1642871-1642902	9	0.719
AP017372_5	5.14|762780|32|AP017372|CRISPRCasFinder,CRT	762780-762811	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1642817-1642848	9	0.719
AP017372_5	5.14|762780|32|AP017372|CRISPRCasFinder,CRT	762780-762811	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	375047-375078	9	0.719
AP017372_5	5.17|762963|33|AP017372|CRISPRCasFinder,CRT	762963-762995	33	JQ067087	Pseudomonas phage PaMx11, complete genome	14969-15001	9	0.727
AP017372_5	5.21|763208|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	763208-763239	32	MN694560	Marine virus AFVG_250M172, complete genome	44240-44271	9	0.719
AP017372_5	5.27|763574|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	763574-763605	32	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	296578-296609	9	0.719
AP017372_5	5.36|762535|33|AP017372|PILER-CR	762535-762567	33	MN586006	Mycobacterium phage Bachome, complete genome	46094-46126	9	0.727
AP017372_5	5.1|761987|32|AP017372|CRISPRCasFinder,CRT	761987-762018	32	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	805892-805923	10	0.688
AP017372_5	5.8|762414|32|AP017372|CRISPRCasFinder,CRT	762414-762445	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	123441-123472	10	0.688
AP017372_5	5.8|762414|32|AP017372|CRISPRCasFinder,CRT	762414-762445	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1582839-1582870	10	0.688
AP017372_5	5.8|762414|32|AP017372|CRISPRCasFinder,CRT	762414-762445	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	123245-123276	10	0.688
AP017372_5	5.8|762414|32|AP017372|CRISPRCasFinder,CRT	762414-762445	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	1358525-1358556	10	0.688
AP017372_5	5.8|762414|32|AP017372|CRISPRCasFinder,CRT	762414-762445	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	1188349-1188380	10	0.688
AP017372_5	5.8|762414|32|AP017372|CRISPRCasFinder,CRT	762414-762445	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	461741-461772	10	0.688
AP017372_5	5.8|762414|32|AP017372|CRISPRCasFinder,CRT	762414-762445	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	368399-368430	10	0.688
AP017372_5	5.8|762414|32|AP017372|CRISPRCasFinder,CRT	762414-762445	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	1689565-1689596	10	0.688
AP017372_5	5.8|762414|32|AP017372|CRISPRCasFinder,CRT	762414-762445	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	846546-846577	10	0.688
AP017372_5	5.8|762414|32|AP017372|CRISPRCasFinder,CRT	762414-762445	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	898532-898563	10	0.688
AP017372_5	5.14|762780|32|AP017372|CRISPRCasFinder,CRT	762780-762811	32	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	790797-790828	10	0.688
AP017372_5	5.14|762780|32|AP017372|CRISPRCasFinder,CRT	762780-762811	32	NZ_CP050100	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b3, complete sequence	164525-164556	10	0.688
AP017372_5	5.14|762780|32|AP017372|CRISPRCasFinder,CRT	762780-762811	32	NZ_CP025017	Rhizobium leguminosarum strain Norway plasmid pRLN5, complete sequence	145251-145282	10	0.688
AP017372_5	5.14|762780|32|AP017372|CRISPRCasFinder,CRT	762780-762811	32	NZ_CP053443	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence	127274-127305	10	0.688
AP017372_5	5.14|762780|32|AP017372|CRISPRCasFinder,CRT	762780-762811	32	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	91247-91278	10	0.688
AP017372_5	5.14|762780|32|AP017372|CRISPRCasFinder,CRT	762780-762811	32	NZ_CP018232	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed4, complete sequence	146709-146740	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	MF399199	Acinetobacter baumannii strain D46 plasmid pD46-4, complete sequence	109511-109542	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	MF399199	Acinetobacter baumannii strain D46 plasmid pD46-4, complete sequence	176712-176743	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_KT601170	Staphylococcus sciuri strain wo28-3 plasmid pwo28-3, complete sequence	7774-7805	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_KX982169	Staphylococcus sciuri strain wo27-9 plasmid pWo27-9, complete sequence	51627-51658	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_KX982171	Staphylococcus sciuri strain wo28-1 plasmid pWo28-1, complete sequence	55935-55966	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_CP040051	Acinetobacter baumannii strain VB16141 plasmid unnamed1, complete sequence	65937-65968	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_CP040051	Acinetobacter baumannii strain VB16141 plasmid unnamed1, complete sequence	104115-104146	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_KX426227	Acinetobacter lwoffii strain ED23-35 plasmid pALWED1.1, complete sequence	135629-135660	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_AP014650	Acinetobacter baumannii strain IOMTU433 plasmid pIOMTU433, complete sequence	54973-55004	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_AP014650	Acinetobacter baumannii strain IOMTU433 plasmid pIOMTU433, complete sequence	93153-93184	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	CP033569	Acinetobacter pittii strain 2014N21-145 plasmid p2014N21-145-1, complete sequence	191947-191978	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_CP012007	Acinetobacter baumannii strain Ab04-mff plasmid pAB04-1, complete sequence	56063-56094	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	CP040054	Acinetobacter baumannii strain VB35179 plasmid unnamed1, complete sequence	52236-52267	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	CP040054	Acinetobacter baumannii strain VB35179 plasmid unnamed1, complete sequence	126675-126706	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_CP050433	Acinetobacter baumannii strain PM194229 plasmid pPM194229_1, complete sequence	118555-118586	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_CP050386	Acinetobacter baumannii strain VB82 plasmid pVB82_1, complete sequence	129578-129609	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_KU744946	Acinetobacter baumannii strain A297 (RUH875) plasmid pA297-3 clone Global clone 1 (GC1), complete sequence	92231-92262	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_KU744946	Acinetobacter baumannii strain A297 (RUH875) plasmid pA297-3 clone Global clone 1 (GC1), complete sequence	170225-170256	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_CP020596	Acinetobacter baumannii strain HWBA8 plasmid pHWBA8_1, complete sequence	154076-154107	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_CP040260	Acinetobacter baumannii strain P7774 plasmid unnamed1, complete sequence	135714-135745	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_KT779035	Acinetobacter baumannii strain D4 plasmid pD4, complete sequence	102224-102255	10	0.688
AP017372_5	5.16|762902|32|AP017372|CRISPRCasFinder,CRT	762902-762933	32	NZ_MK323043	Acinetobacter baumannii strain Acb-45063 plasmid pAb45063_b, complete sequence	3661-3692	10	0.688
AP017372_5	5.19|763086|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	763086-763117	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	704027-704058	10	0.688
AP017372_5	5.24|763391|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	763391-763422	32	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	64512-64543	10	0.688
AP017372_5	5.40|762779|33|AP017372|PILER-CR	762779-762811	33	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	1456122-1456154	10	0.697
AP017372_4	4.6|760416|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	760416-760447	32	MG065659	UNVERIFIED: Campylobacter phage C5, complete genome	37923-37954	11	0.656
AP017372_4	4.6|760416|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	760416-760447	32	MG065655	UNVERIFIED: Campylobacter phage C2, complete genome	5920-5951	11	0.656
AP017372_4	4.6|760416|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	760416-760447	32	MG065666	UNVERIFIED: Campylobacter phage A12a, complete genome	4290-4321	11	0.656
AP017372_4	4.6|760416|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	760416-760447	32	KJ190158	Escherichia phage vB_EcoM_FFH2, complete genome	111492-111523	11	0.656
AP017372_4	4.6|760416|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	760416-760447	32	MG065654	UNVERIFIED: Campylobacter phage C15, complete genome	4317-4348	11	0.656
AP017372_4	4.9|760599|32|AP017372|CRISPRCasFinder,CRT,PILER-CR	760599-760630	32	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	589538-589569	11	0.656
AP017372_5	5.1|761987|32|AP017372|CRISPRCasFinder,CRT	761987-762018	32	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	1330843-1330874	11	0.656

1. spacer 4.9|760599|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032687 (Rhizobium sp. CCGE531 plasmid pRCCGE531b, complete sequence) position: , mismatch: 7, identity: 0.781

caatcttagcactgtcaagatcgacggactgg	CRISPR spacer
cacgctcggcactatcaagatcgacggattgc	Protospacer
**  **..*****.**************.** 

2. spacer 4.9|760599|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032692 (Rhizobium sp. CCGE532 plasmid pRCCGE532b, complete sequence) position: , mismatch: 7, identity: 0.781

caatcttagcactgtcaagatcgacggactgg	CRISPR spacer
cacgctcggcactatcaagatcgacggattgc	Protospacer
**  **..*****.**************.** 

3. spacer 4.9|760599|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to NC_020061 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899b, complete sequence) position: , mismatch: 7, identity: 0.781

caatcttagcactgtcaagatcgacggactgg	CRISPR spacer
cacgctcggcactatcaagatcgacggattgc	Protospacer
**  **..*****.**************.** 

4. spacer 5.1|761987|32|AP017372|CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 7, identity: 0.781

cggactcgacctcctccatcgagccgtaactc	CRISPR spacer
aggcctcgacctcctccatcgagcggaggcgc	Protospacer
 ** ******************** * ..* *

5. spacer 5.1|761987|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP009112 (Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence) position: , mismatch: 7, identity: 0.781

cggactcgacctcctccatcgagccgtaactc	CRISPR spacer
ccggctcgacgtcctccatcgagacgtgaagc	Protospacer
* *.****** ************ ***.*  *

6. spacer 5.9|762475|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP045721 (Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

agttgggtgctgagcttgtccctgcaatgctt	CRISPR spacer
actggtatgctgagcatggccctgcaatgctg	Protospacer
* * * .******** ** ************ 

7. spacer 5.9|762475|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP022517 (Pantoea vagans strain FBS135 plasmid pPant1, complete sequence) position: , mismatch: 7, identity: 0.781

agttgggtgctgagcttgtccctgcaatgctt	CRISPR spacer
actggtatgctgagcatggccctgcaatgctg	Protospacer
* * * .******** ** ************ 

8. spacer 5.14|762780|32|AP017372|CRISPRCasFinder,CRT matches to NZ_KY349138 (Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence) position: , mismatch: 7, identity: 0.781

ataaccggcggcggtgagccgtcagatgagtg-	CRISPR spacer
ctcggcggcggcgttgggccgtcagatg-gtgt	Protospacer
 * . ******** **.*********** *** 

9. spacer 5.29|763696|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to MK504443 (Lactobacillus phage 521B, complete genome) position: , mismatch: 7, identity: 0.781

tcatcggtagtcattaaatctgctactcgtat	CRISPR spacer
tcgctggtaatcattaagtctgctactcccat	Protospacer
**...****.*******.********** .**

10. spacer 5.35|762474|33|AP017372|PILER-CR matches to NZ_CP045721 (Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

gagttgggtgctgagcttgtccctgcaatgctt	CRISPR spacer
gactggtatgctgagcatggccctgcaatgctg	Protospacer
** * * .******** ** ************ 

11. spacer 5.35|762474|33|AP017372|PILER-CR matches to NZ_CP022517 (Pantoea vagans strain FBS135 plasmid pPant1, complete sequence) position: , mismatch: 7, identity: 0.788

gagttgggtgctgagcttgtccctgcaatgctt	CRISPR spacer
gactggtatgctgagcatggccctgcaatgctg	Protospacer
** * * .******** ** ************ 

12. spacer 4.3|760233|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041653 (Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence) position: , mismatch: 8, identity: 0.75

gtaagtaccccgacgcggagccgtcgcactac	CRISPR spacer
ccaagaaccccgacgcgaagccgtcgttcggc	Protospacer
 .*** ***********.********. * .*

13. spacer 4.9|760599|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 8, identity: 0.75

caatcttagcactgtcaagatcgacggactgg	CRISPR spacer
cgcggttagcactgtgaagatggacggatcgg	Protospacer
*.   ********** ***** ******..**

14. spacer 5.10|762536|32|AP017372|CRISPRCasFinder,CRT matches to MN586006 (Mycobacterium phage Bachome, complete genome) position: , mismatch: 8, identity: 0.75

cgttcagctgctcgcggacacgctcttcgtca	CRISPR spacer
tgttctcctgctcgcggacacgctcagcgatg	Protospacer
.****  ******************  ** ..

15. spacer 5.10|762536|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP021777 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0053 plasmid unitig_2, complete sequence) position: , mismatch: 8, identity: 0.75

cgttcagctgctcgcggacacgctcttcgtca	CRISPR spacer
cgttcagctgctcgctgatacgcccgtgcaaa	Protospacer
*************** **.****.* *    *

16. spacer 5.11|762597|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP054609 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ctgcccatggaatatgagccggatc--gccattg	CRISPR spacer
ggacccattgaatatgagacggatcgggcgat--	Protospacer
  .***** ********* ******  ** **  

17. spacer 5.11|762597|32|AP017372|CRISPRCasFinder,CRT matches to MK675901 (Shewanella phage S0112, complete genome) position: , mismatch: 8, identity: 0.75

ctgcccatggaatatgagccggatcgccattg	CRISPR spacer
cttccgatggaatatgagccggagagatgctg	Protospacer
** ** *****************  * ...**

18. spacer 5.21|763208|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to KX961385 (Bordetella virus LK3, complete genome) position: , mismatch: 8, identity: 0.75

ccctggcgcccggacgatgcccgtgtctatca	CRISPR spacer
gtcggtggcccggacgatgcccgtttcaatct	Protospacer
 .* *  ***************** ** *** 

19. spacer 5.21|763208|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to KY000220 (Bordetella phage FP1, complete genome) position: , mismatch: 8, identity: 0.75

ccctggcgcccggacgatgcccgtgtctatca	CRISPR spacer
gtcggtggcccggacgatgcccgtttcaatct	Protospacer
 .* *  ***************** ** *** 

20. spacer 5.21|763208|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to KY000221 (Bordetella phage CN1, complete genome) position: , mismatch: 8, identity: 0.75

ccctggcgcccggacgatgcccgtgtctatca	CRISPR spacer
gtcggtggcccggacgatgcccgtttcaatct	Protospacer
 .* *  ***************** ** *** 

21. spacer 5.21|763208|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to NC_047877 (Bordetella phage CN2, complete genome) position: , mismatch: 8, identity: 0.75

ccctggcgcccggacgatgcccgtgtctatca	CRISPR spacer
gtcggtggcccggacgatgcccgtttcaatct	Protospacer
 .* *  ***************** ** *** 

22. spacer 5.22|763269|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to MG757154 (Streptomyces phage Bing, complete genome) position: , mismatch: 8, identity: 0.75

atgaaccgatcaccagccttgtcccacggcaa	CRISPR spacer
tagtaccgctcgccagccttgtcccacgtaag	Protospacer
  * **** **.****************  *.

23. spacer 5.24|763391|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015043 (Rhodovulum sp. P5 plasmid pRGUI04, complete sequence) position: , mismatch: 8, identity: 0.75

gcgatggagctgtttggcgcgcgctactttag	CRISPR spacer
tgcatggggctgcttggcgcgcgctacatgaa	Protospacer
   ****.****.************** * *.

24. spacer 5.26|763513|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to NC_028795 (Enterobacter phage E-3, complete genome) position: , mismatch: 8, identity: 0.75

aaaggctggttaggtggcatcagagccattaa	CRISPR spacer
gtcagtcggataggtggcatcagagccatcaa	Protospacer
.  .*..** *******************.**

25. spacer 5.26|763513|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to NC_016974 (Providencia stuartii plasmid pMR0211, complete sequence) position: , mismatch: 8, identity: 0.75

aaaggctggttaggtggcatcagagccattaa	CRISPR spacer
tgaggctggttcggtggcatgagagctgatta	Protospacer
 .********* ******** *****.. * *

26. spacer 5.37|762596|33|AP017372|PILER-CR matches to MK675901 (Shewanella phage S0112, complete genome) position: , mismatch: 8, identity: 0.758

gctgcccatggaatatgagccggatcgccattg	CRISPR spacer
gcttccgatggaatatgagccggagagatgctg	Protospacer
*** ** *****************  * ...**

27. spacer 4.1|760111|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 9, identity: 0.719

cagcgacaattaaccggcattcctggcaaaat	CRISPR spacer
gtggtataattaaccggcattcatggccaagc	Protospacer
  *  *.*************** **** **..

28. spacer 4.2|760172|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 9, identity: 0.719

ctccgacgctgctctcctcagcttcggcttgg	CRISPR spacer
tcgcctcgctgcgctcctcaccttcggctccg	Protospacer
.. *  ****** ******* ********. *

29. spacer 4.8|760538|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015203 (Rhodococcus sp. 008 plasmid pR8L1, complete sequence) position: , mismatch: 9, identity: 0.719

agcggcacgtttaccatgcccgaagatgaaat	CRISPR spacer
agcggcacgtagaccatgcccgaacgccacgc	Protospacer
**********  ************ .. * ..

30. spacer 5.1|761987|32|AP017372|CRISPRCasFinder,CRT matches to NC_013858 (Azospirillum sp. B510 plasmid pAB510d, complete sequence) position: , mismatch: 9, identity: 0.719

cggactcgacctcctccatcgagccgtaactc	CRISPR spacer
cttcgtcgacctccagcatcgagccgtagcgg	Protospacer
*    *********  ************.*  

31. spacer 5.12|762658|32|AP017372|CRISPRCasFinder,CRT matches to MN032972 (Leviviridae sp. isolate H2_Rhizo_Litter_7_scaffold_10692 sequence) position: , mismatch: 9, identity: 0.719

tcccgcgtctataccgacaagagtttgggcgc	CRISPR spacer
cttcgtgtcaataccgacaagagtttctggac	Protospacer
...**.*** ****************  * .*

32. spacer 5.12|762658|32|AP017372|CRISPRCasFinder,CRT matches to MN033187 (Leviviridae sp. isolate H2_Rhizo_Litter_49_scaffold_9067 RNA-dependent RNA polymerase (H2RhizoLitter499067_000001) gene, complete cds; and hypothetical protein (H2RhizoLitter499067_000002) gene, partial cds) position: , mismatch: 9, identity: 0.719

tcccgcgtctataccgacaagagtttgggcgc	CRISPR spacer
cttcgtgtcaataccgacaagagtttctggac	Protospacer
...**.*** ****************  * .*

33. spacer 5.14|762780|32|AP017372|CRISPRCasFinder,CRT matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 9, identity: 0.719

ataaccggcggcggtgagccgtcagatgagtg	CRISPR spacer
cacgcaggcggcggtgagccgtcaggtcaggt	Protospacer
   .* *******************.* **  

34. spacer 5.14|762780|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ataaccggcggcggtgagccgtcagatgagtg	CRISPR spacer
gagaccggcggcgctgagccgtcggacgtgct	Protospacer
. .********** *********.**.* *. 

35. spacer 5.14|762780|32|AP017372|CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 9, identity: 0.719

ataaccggcggcggtgagccgtcagatgagtg	CRISPR spacer
gagaccggcggcgctgagccgtcggacgtgct	Protospacer
. .********** *********.**.* *. 

36. spacer 5.14|762780|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ataaccggcggcggtgagccgtcagatgagtg	CRISPR spacer
gagaccggcggcgctgagccgtcggacgtgct	Protospacer
. .********** *********.**.* *. 

37. spacer 5.14|762780|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ataaccggcggcggtgagccgtcagatgagtg	CRISPR spacer
gagaccggcggcgctgagccgtcggacgtgct	Protospacer
. .********** *********.**.* *. 

38. spacer 5.14|762780|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ataaccggcggcggtgagccgtcagatgagtg	CRISPR spacer
gagaccggcggcgctgagccgtcggacgtgct	Protospacer
. .********** *********.**.* *. 

39. spacer 5.14|762780|32|AP017372|CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ataaccggcggcggtgagccgtcagatgagtg	CRISPR spacer
gagaccggcggcgctgagccgtcggacgtgct	Protospacer
. .********** *********.**.* *. 

40. spacer 5.14|762780|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ataaccggcggcggtgagccgtcagatgagtg	CRISPR spacer
gagaccggcggcgctgagccgtcggacgtgct	Protospacer
. .********** *********.**.* *. 

41. spacer 5.14|762780|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ataaccggcggcggtgagccgtcagatgagtg	CRISPR spacer
gagaccggcggcgctgagccgtcggacgtgct	Protospacer
. .********** *********.**.* *. 

42. spacer 5.17|762963|33|AP017372|CRISPRCasFinder,CRT matches to JQ067087 (Pseudomonas phage PaMx11, complete genome) position: , mismatch: 9, identity: 0.727

ttcgccggtagaaagctgattttcaagcgcgac	CRISPR spacer
ggtgccggtaacaagctgattttcaagctgccc	Protospacer
  .*******. ****************    *

43. spacer 5.21|763208|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to MN694560 (Marine virus AFVG_250M172, complete genome) position: , mismatch: 9, identity: 0.719

ccctggcgcccggacgatgcccgtgtctatca	CRISPR spacer
gggcagagcccgggcgatgcccgtgtccatga	Protospacer
   ..* ******.*************.** *

44. spacer 5.27|763574|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 9, identity: 0.719

tccggtaggggcataggacgtaaagcgaaccc	CRISPR spacer
gctgccgcgggcatgggacgtaacgcgaaccg	Protospacer
 *.* .. ******.******** ******* 

45. spacer 5.36|762535|33|AP017372|PILER-CR matches to MN586006 (Mycobacterium phage Bachome, complete genome) position: , mismatch: 9, identity: 0.727

gcgttcagctgctcgcggacacgctcttcgtca	CRISPR spacer
ttgttctcctgctcgcggacacgctcagcgatg	Protospacer
 .****  ******************  ** ..

46. spacer 5.1|761987|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

cggactcgacctcctccatcgagccgtaactc	CRISPR spacer
gggacacgacctcctccatcgtgcgcaggcgg	Protospacer
 **** *************** **   ..*  

47. spacer 5.8|762414|32|AP017372|CRISPRCasFinder,CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 10, identity: 0.688

gacgacgaaaccattcgcgctagcgaagaata	CRISPR spacer
cttggcgaaaccattcgcgcgatcgaagggcc	Protospacer
  .*.*************** * *****... 

48. spacer 5.8|762414|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 10, identity: 0.688

gacgacgaaaccattcgcgctagcgaagaata	CRISPR spacer
cttggcgaaaccattcgcgcgatcgaagggcc	Protospacer
  .*.*************** * *****... 

49. spacer 5.8|762414|32|AP017372|CRISPRCasFinder,CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 10, identity: 0.688

gacgacgaaaccattcgcgctagcgaagaata	CRISPR spacer
cttggcgaaaccattcgcgcgatcgaagggcc	Protospacer
  .*.*************** * *****... 

50. spacer 5.8|762414|32|AP017372|CRISPRCasFinder,CRT matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 10, identity: 0.688

gacgacgaaaccattcgcgctagcgaagaata	CRISPR spacer
cttggcgaaaccattcgcgcgatcgaagggcc	Protospacer
  .*.*************** * *****... 

51. spacer 5.8|762414|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.688

gacgacgaaaccattcgcgctagcgaagaata	CRISPR spacer
cttggcgaaaccattcgcgcgatcgaagggcc	Protospacer
  .*.*************** * *****... 

52. spacer 5.8|762414|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.688

gacgacgaaaccattcgcgctagcgaagaata	CRISPR spacer
cttggcgaaaccattcgcgcgatcgaagggcc	Protospacer
  .*.*************** * *****... 

53. spacer 5.8|762414|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.688

gacgacgaaaccattcgcgctagcgaagaata	CRISPR spacer
cttggcgaaaccattcgcgcgatcgaagggcc	Protospacer
  .*.*************** * *****... 

54. spacer 5.8|762414|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.688

gacgacgaaaccattcgcgctagcgaagaata	CRISPR spacer
cttggcgaaaccattcgcgcgatcgaagggcc	Protospacer
  .*.*************** * *****... 

55. spacer 5.8|762414|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.688

gacgacgaaaccattcgcgctagcgaagaata	CRISPR spacer
cttggcgaaaccattcgcgcgatcgaagggcc	Protospacer
  .*.*************** * *****... 

56. spacer 5.8|762414|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.688

gacgacgaaaccattcgcgctagcgaagaata	CRISPR spacer
cttggcgaaaccattcgcgcgatcgaagggcc	Protospacer
  .*.*************** * *****... 

57. spacer 5.14|762780|32|AP017372|CRISPRCasFinder,CRT matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 10, identity: 0.688

ataaccggcggcggtgagccgtcagatgagtg	CRISPR spacer
gacgccgggcgcggtgagccgtcagattcgcc	Protospacer
.  .****  *****************  *. 

58. spacer 5.14|762780|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP050100 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b3, complete sequence) position: , mismatch: 10, identity: 0.688

ataaccggcggcggtgagccgtcagatgagtg	CRISPR spacer
ggtgccggcggcggtgaaccgacagattcgat	Protospacer
.  .*************.*** *****  *  

59. spacer 5.14|762780|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP025017 (Rhizobium leguminosarum strain Norway plasmid pRLN5, complete sequence) position: , mismatch: 10, identity: 0.688

ataaccggcggcggtgagccgtcagatgagtg	CRISPR spacer
ggtgccggcggcggtgaaccggcagattcgat	Protospacer
.  .*************.*** *****  *  

60. spacer 5.14|762780|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP053443 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence) position: , mismatch: 10, identity: 0.688

ataaccggcggcggtgagccgtcagatgagtg	CRISPR spacer
ggtgccggcggcggtgaaccggcagattcgat	Protospacer
.  .*************.*** *****  *  

61. spacer 5.14|762780|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 10, identity: 0.688

ataaccggcggcggtgagccgtcagatgagtg	CRISPR spacer
actgacggcggcggggagccgccagatgtacc	Protospacer
*. . ********* ******.****** .. 

62. spacer 5.14|762780|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP018232 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.688

ataaccggcggcggtgagccgtcagatgagtg	CRISPR spacer
ggtgccggcggcggtgaaccggcagattcgat	Protospacer
.  .*************.*** *****  *  

63. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to MF399199 (Acinetobacter baumannii strain D46 plasmid pD46-4, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

64. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to MF399199 (Acinetobacter baumannii strain D46 plasmid pD46-4, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

65. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_KT601170 (Staphylococcus sciuri strain wo28-3 plasmid pwo28-3, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatacctgcaaaccaccaacctgcatacaac	Protospacer
    * .***********.****** ****. 

66. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_KX982169 (Staphylococcus sciuri strain wo27-9 plasmid pWo27-9, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatacctgcaaaccaccaacctgcatacaac	Protospacer
    * .***********.****** ****. 

67. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_KX982171 (Staphylococcus sciuri strain wo28-1 plasmid pWo28-1, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatacctgcaaaccaccaacctgcatacaac	Protospacer
    * .***********.****** ****. 

68. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP040051 (Acinetobacter baumannii strain VB16141 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

69. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP040051 (Acinetobacter baumannii strain VB16141 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

70. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_KX426227 (Acinetobacter lwoffii strain ED23-35 plasmid pALWED1.1, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

71. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_AP014650 (Acinetobacter baumannii strain IOMTU433 plasmid pIOMTU433, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

72. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_AP014650 (Acinetobacter baumannii strain IOMTU433 plasmid pIOMTU433, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

73. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to CP033569 (Acinetobacter pittii strain 2014N21-145 plasmid p2014N21-145-1, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

74. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP012007 (Acinetobacter baumannii strain Ab04-mff plasmid pAB04-1, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

75. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to CP040054 (Acinetobacter baumannii strain VB35179 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

76. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to CP040054 (Acinetobacter baumannii strain VB35179 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

77. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP050433 (Acinetobacter baumannii strain PM194229 plasmid pPM194229_1, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

78. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP050386 (Acinetobacter baumannii strain VB82 plasmid pVB82_1, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

79. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_KU744946 (Acinetobacter baumannii strain A297 (RUH875) plasmid pA297-3 clone Global clone 1 (GC1), complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

80. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_KU744946 (Acinetobacter baumannii strain A297 (RUH875) plasmid pA297-3 clone Global clone 1 (GC1), complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

81. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP020596 (Acinetobacter baumannii strain HWBA8 plasmid pHWBA8_1, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

82. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_CP040260 (Acinetobacter baumannii strain P7774 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

83. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_KT779035 (Acinetobacter baumannii strain D4 plasmid pD4, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

84. spacer 5.16|762902|32|AP017372|CRISPRCasFinder,CRT matches to NZ_MK323043 (Acinetobacter baumannii strain Acb-45063 plasmid pAb45063_b, complete sequence) position: , mismatch: 10, identity: 0.688

gttgagttgcaaaccaccgacctgcctacaga	CRISPR spacer
caatagttgcaaaccacagacctaccttaaac	Protospacer
    ************* *****.***  *. 

85. spacer 5.19|763086|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 10, identity: 0.688

attacggcacggggcgatcagggaaacgggtc	CRISPR spacer
cgaacggcacgaggcgatcatggaaattaccc	Protospacer
   ********.******** *****. . .*

86. spacer 5.24|763391|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

gcgatggagctgtttggcgcgcgctactttag	CRISPR spacer
cacatggtgctgtttggcccgcgctatcgcgg	Protospacer
   **** ********** *******.. ..*

87. spacer 5.40|762779|33|AP017372|PILER-CR matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 10, identity: 0.697

gataaccggcggcggtgagccgtcagatgagtg	CRISPR spacer
tcacgcaggcggcggtgagccgtcaggtcaggt	Protospacer
    .* *******************.* **  

88. spacer 4.6|760416|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to MG065659 (UNVERIFIED: Campylobacter phage C5, complete genome) position: , mismatch: 11, identity: 0.656

cgcgtctttagccgccgcctctgcgccttctt	CRISPR spacer
gattcgtttaaccgccgcctcagcgccttggg	Protospacer
 .. . ****.********** *******   

89. spacer 4.6|760416|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to MG065655 (UNVERIFIED: Campylobacter phage C2, complete genome) position: , mismatch: 11, identity: 0.656

cgcgtctttagccgccgcctctgcgccttctt	CRISPR spacer
gattcgtttaaccgccgcctcagcgccttggg	Protospacer
 .. . ****.********** *******   

90. spacer 4.6|760416|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to MG065666 (UNVERIFIED: Campylobacter phage A12a, complete genome) position: , mismatch: 11, identity: 0.656

cgcgtctttagccgccgcctctgcgccttctt	CRISPR spacer
gattcgtttaaccgccgcctcagcgccttggg	Protospacer
 .. . ****.********** *******   

91. spacer 4.6|760416|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to KJ190158 (Escherichia phage vB_EcoM_FFH2, complete genome) position: , mismatch: 11, identity: 0.656

cgcgtctttagccgccgcctctgcgccttctt	CRISPR spacer
gattcgtttaaccgccgcctcagcgccttggg	Protospacer
 .. . ****.********** *******   

92. spacer 4.6|760416|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to MG065654 (UNVERIFIED: Campylobacter phage C15, complete genome) position: , mismatch: 11, identity: 0.656

cgcgtctttagccgccgcctctgcgccttctt	CRISPR spacer
gattcgtttaaccgccgcctcagcgccttggg	Protospacer
 .. . ****.********** *******   

93. spacer 4.9|760599|32|AP017372|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

caatcttagcactgtcaagatcgacggactgg	CRISPR spacer
acatcttaacactttcaagatcgactcctgaa	Protospacer
  ******.**** ***********   . ..

94. spacer 5.1|761987|32|AP017372|CRISPRCasFinder,CRT matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 11, identity: 0.656

cggactcgacctcctccatcgagccgtaactc	CRISPR spacer
tctcctcgaccttctccatcgaggcgttgaaa	Protospacer
.   ********.********** *** .   

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	688627 : 714350	26	Burkholderia_virus(33.33%)	transposase,integrase,holin,protease	attL 688662:688721|attR 697028:698358
DBSCAN-SWA_2	1579081 : 1589746	8	Klosneuvirus(33.33%)	integrase,tRNA	attL 1574902:1574914|attR 1585029:1585041
DBSCAN-SWA_3	1627203 : 1637991	9	uncultured_Mediterranean_phage(57.14%)	tRNA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>AP017372|688627:714350|DBSCAN-SWA
CTCACGCAACCGCCGATCTACATATTGTGCCATAGGGTGAGGCAGGCAGATGGGTGAGCTTGCCAGCGATCAGGTAGCAGATGGAGATCAGATTCTTCGTGGTGCGAAATCCTCGTGCACGGCCCTTGGCAACTTGAATCTGACCGTTCATGCTTTCGACGGGGCCGTTTGATAAGCGAGAGTCAAAGGCGTTGAGGATGCCCTGCCAGTGAGCCTTGAGCGTTAACGCTAGGCGCTTGAACGGCTCCAGCCGGCAGCGCCGAGCCCAACTGTACCAGGCGTTGAGGTTTTGCTCAGCCTCTCTGCGAGCACCACTGCCGGTCAGTATTTCGCGCAGTGCCTCCTTGAGCCGCCAGGCGCGGGCTGTTTTCAGCCTCGTCCGTGACAGGTAATGCAGTTCGGTGAGCTGCTTGAGCGTGTGCCGCGAGGCATCCTTAAGCCAGACCCAGCGAGTGCGCTTGAGCGCAGGCTCCAGGCGCACCTCGGCGCGGCGGACCTCGTCGACTGCCTGATTAGCCAGCTGCACCACATGGAAGGCGTCGAAGGTAATCGCTGCCTCGGGTAGATACCGCTGCACGCCGGCGATGTAGGCCTTGCTCATATCGATGCATACCGCCTCGACAGAGTCCCTATCGCCGCCGTGATCGTGTAGATCCGCCACAAACGCCCCAATGGTCGACTGGTTCCGCCCTTCGCAGGCAAAGAGTAGGCGTCGGTCATCAAGGTCCTGGAAGACAGTGATATAGTTATGCCCGCGCCGCGAGGCCGTCTCGTCGATGCCGACAGCGCGAACGTTGCTGAAGTCCTCCTGAGCACGGGCTGCTTCCACGTAGTGGTTGAGGATTCGCCAAATTGGGTCATCACCAACACCCAGGTAGTTAGCGACCTTCTGGACCGACATCTGCTGGCAGAGGGTAATGACCATCGCCTCGAACAACTGCGAGAACCCGCTGCCTGGACGCGCCCAAGGCACCTCGACCTGAGTGGTCTTCCCGCAGTCCTGACATCGCACCCTGGGCACGGCGGCATGGATATAGGCCTGGTGCTCGAAGAAATGCAGGTGCTGCCAGGAACGCTGACGGGTGTCATGAACTGCTTGAGCCTCGGCGCCACAGGCCGGGCAGGCGAAGCGGCTGCCGCTGGTGAAGGTGATATCGAAGTCGATGCGCTTGGCCTGCGCATCAAAGCGGATGTCACTGACTTTCCAGGGTGCACTCAACCCAAGCGCGGCGGTGAACAGGGCGTGCTCAGTAGCCATGGCAACTCCTCGCAAAAATGGTGTGGCGAGGCACAACATATAGGATCACACCCAGCGTTGACTACCTCGTCTTAAGCTGCTGTCACCCACACAATTCGCGAAGGGACCAGTAATTGGTTGAAGTGACTGCTCCCCGCCCTAAGCGCTCAAGCGCCACGGGCGAGGCTTCCAACTTCTCAGGCAGCGGCGAGTGCGTGACTCGTCTTACGCTTGCCTCCATTGGCAGAGACCGACAGTCCTGCGGCCTTTAATTTCAAAATACCTTGTGCCTTGATATTCAAGGCTGCATCGATGTCTCGATCATGCCTGACTGAACAAGCTGGACACTGCCATTCACGGACTTTCAGCGACAACTCTTCCAGCTTGTGTCCACAGCAAGAACAGGTCTTGGAGCTGGCAAGCCACTGATCAATTTTGATCAGATGCTTACCTTGCGCTTTGGCTTTGTACTCCAGCTTTTCGATTACGCCTGACCAACTGGCATCGGCAATGTGCTTGGACAATTTCTTGTTCTTCAGCATGTTTTTGACTTTCAGTGTCTCGACAATCACCGCTTGGTTTTCGTCAATAAGTTGTCGAGATAGCTTGTGCTGGAAATCAGCACGAGCATTTGCCAGACGCTGATGCGCCTTAGCGAGCTTAAGTCGGGCTTTTGCCCGCCTTTTACTGCCTTTTTTGCAGCGTGATACAGCTTTTTGCTTACGGCGCAGATTGGCACTGGCTTTCTTTAAAAAGCGTGGATTCGGCTCTTTCGTTCCGCTTGAATCAATGGCTAGGTGTGTTAAACCCATATCCAATCCGAGCACTTTATCTTCATTCAGGCTTTGGATGGGTGTAGGGGCTTCTTGCCCATCGTCATGCAGCAGTGAGGCATAGTATTCGCCTGTTACGGGATAGGGTGATGCTTTTCAGCTTGCCTTCAAGCTTGCGATGAATCCGCGCTTTGATTGGCTCTAGCTTGGGTACTTTGATCCAGTCATCACCACAGCCAACACTCATGCAGTGATAGCTCGATTGCTTGCCTTGTTTACGTTTGAACTTGGGACAACGGGAGGCAAGCTTCGGATCGAAAAAACGCTGAAAAGCCTGATAAAGATTGATACAGGCTTGCTGGAGTGCAATTGAATCAAAATCATTGAGCCAATGATACTTGCGGGACTTTTTCGCCACAGCCAGCAAGGGCTTGAGCTCTTTCTTGGCATTCAATTTCAGGCCATGACGCTTGTACTGGCTACTGATGATATGCAGAGCCTTGTTGTACGCAAAGCGCACAGCACCGAACTGGCGGTTTAAAAACTCCGCCTGCTCAGGTGTTGGATAAATGCGTACTTTCGTAGCCTTTAACATTTCAGTGCTCATTGATATAATTCAATAATTATAAGCCATCAAGGTCATATTTCAAGTAAGTGCATATCATAAAGAGTTGCTATCAGATTACCTCCGAAAACGCCACAGCGTCACCAAGCTGGTTGTACATCTGGTCTTTACCACCAAGTATACCGGCGAAAACTGTTCGATGGTTATATGATTGAGCAGCTGAGCGAAGCGTTTGAGTCTGCTTGTGAAAAACTGGAATGTAACTTGCTGGAAATGGACGGTGAAGCGGATCATGTTCATCTGTTGATAGCCTATCCAGCGAAACTGGCGGTAAGCATCATGGTAAACAACCTGAAGTCAGTCTCATCACGCCGGATACGCATACTCAATACCCATATACCCCGCCAAAGCAAAAGTGCAGCAATCTGGTCGCGCTCCTACTTTGCCTGTAGCGCAGGCGGGGCAACGATTGAGACTTTGCGTGAGTATGTGCAGAGCCAAGCCACCCCTGAATAGAACCGCTGCGCGGTTCCCGCTTATATCCCCGCCCGATTGGGCGAGGGTTTACGCGGATTTTGCTAAGGAGCAACTTTCCTCGAAAAGCACGCAAGTATCGAACCACAGCCGCAAATCAGAACATAGAGGAGCCAAGATAATTGATAGGCCGAGGCCAGCTAGGAGGCGCTGTCAAAAAACACCTTAAACCCCTTTTGGGATTGGGAGCAGCTACTGTTCTCGTCGTTGCCGCTGGTGGTGTTGGCTCCTACCTCTACTCCGACTCCCGAGAAAAAGATGAGCGACTATGGAATCAGGCGCTTGAGGTGGACAGTATCGAGGCCTATGAGGAATACCTGTCTGACTGCGAAGAGCGTTGGATCTGCGGGTACGAGGCGGATGCCCGGCAAGCAGTTGGGGAACTGGAGGAGATAGAGCTAGCGGCTGCCGAGGACGAACGGCTGTGGTCCGAGGCGCAGGAAGTAGACACTCAAGAGGCTTACGCAGACTACCTTGAGGGATGCCAGGATCGGTTGGTTTGCGAGCATATGGCGGATGCCAAAGAGGCGCTGGCACTCTTGCATGACCGGAAAGAGGCCCTGACTGAGGATGAGCGCCTTTGGTCCAAGGCGCAGGAGAAAGGGAGCCTTGAGGCTTATGAGGACTACCTTGCAGGATGCGAGGAGCGACCGGTCTGCCAGCATGAGGCAGATGCCCGGGAAGCGATTGGGGAGCTCGAAACAGAACAGTATGCAGCCGAGGACGAGCGTTTATGGTTCGAGGCGCAAGAGGCGGATAGCCTCGAGGCTTATCAAGACTACCTAGCAGGCTGCAACAGGCGGCCGTCATGCCAGTATGAGGCTCAGGCCCGAGAAGCCATCGAAGAGCTGGAAGAAGAGCTTTCTGCAGCAGAGGATGAGCGGTTGTGGTCAGAGGCGCAGGAGGAGGACAGCCTCGAGGCCTATAAAGACTACCTAGCAGGCTGTGATCAGCGACTGGTCTGTCAATATGAGGCGGATGCCCGGGAGGCGATTGAAGAGCTCGAGGAGGAACTGTCTGCAGTCGAGGACGAGCGTTTGTGGGCCGAGGCTCAGGAAGTGGATAGCCTCGAGTCTTATGAAGACTACTTAGCAGGCTGCGAGGAGCGGCTGGTTTGCCAGTATGAGGCGGAGGCCCAGGAAGCGATTGAAGAGTTGGAAGAGGAGTTGGCAGCGGCCAAAAAGGAGGATGAGCGCCTTTGGTCCGAGGCGCAGGAGGCCGATAACCTCGAGGCTTATGAGGGCTATCTAGCAGACTGCGATGAACGGTTGGTTTGCCAGTATAAGCAAGATGCGCAAAAAGCGATTGATTCATTTATAGGCCACGGTAACCGGTATCGCGACAACCGCGACGGCACGGTTACTGATATAGAGACCGGACTGATGTGGATGCGTTGCTCTTTGGGGCAGAAATGGCGTGATGGGGCCTGTGAGCAAGAGGCAGAAATTTACACCTGGCATGAGGCCAGGGGCGAGGAGGGATATAGTTTTGCCGGCTACGATGATTGGCGCCTACCTGAGATCGAAGAGTTGAAAGAAATTGTCTTCTGTCCCTCCGGTGAGCCCAGTTACAGGGGATTGATCCATCGCCCGGATGCGGGCTTCTTTGACCGGGAGACGTGTGAGGGTGATGACGATCAGCCGGCTATTGACGAGAACGCGTTTCCCGATACGCCTTCGTCCAATTTTTGGTCATCTTCGCCCTATGCCGATAATTCCAGCCGCGCGTGGTATATCGACTTCTATCATGGCTTCGACAACTGGCTCGATAAGGGTAGCTACGGCAGGGTAAGGTTGGTGCGCAGCGACAGTGGTCGAAGAGACGAGTAGCCGGAGCGCTTGACCTCAACAATGTGCAGGGAATAGCCTTTAAAGGGGGAAGAGGCAGAGAAGTGCTGGATCTGCCGCTGCGATATCTACGACAATTGATCGTCGGTGCGGTAGCCGACCTCGCCAAGCATTTAAACATGGAGGTGGTGGCCGAGGGCATTGAAGATGAGTCAACCCTTAACATGGTTAGGGAGCTGGGTTGCGACGTCGCCCAAGGCTACTTTATTGGCAGGCCGCAGCCTTTGCAGGGCTGGGATTTGCAGCGCGGTGTTAAGCAGGTCAATACCCGGCAATGAAAGAATTACTGATCATCCGTCACGCCAAGTCGAGTTGGTACAATCCCCACCTCAATGACAAAGAGCGACCGCTAGCCCCCCGCGGCGAGAAGGCTGCTCCGATGATGGCCCAGCGGCTAGTCCAGCGCGGCGCTATTCCGCAACTTATAGTTACCTCGGAGGCGGTTAGGGCTCAGCAGACCGCGCGTTTAATGGCAGCAGCTATGGGCTTAGATGATCAGCTAATTGTGCTTGATAAGAGGCTATACAACGCCGGACCAGCCGAGTGGCTGGAGATTATTCGAGATCAGCCGGATACCTACCAGAGGATTGCTCTGATCGGCCATAACCCGGCGATAGAAGAGACTGCACGTAGCCTTTTTTCTCTCCAAGTAGCCAAGGTGCCCACAGCGGCGGTTATTACAGTGCGGTTTGGGTGTGATCGCTGGGTGCAGGTAGATCCAAAGTGGTCAGAGGTGGTGGGTTTTGATTATCCGAAGAGGCGGGGTTAGGTGAAGGAGGGGGGCGTCCAACTACTTCCCCGTAGCCATTATCTGCCCCGCTGTGGAGGACGCCGTGAATCCATCCCTGGAGGCTTCATGGCGCCATCCTTGGCGCCAAGACCTCCACATCGGGGCAGATAATGGCTACGGGGAAGTTTTAGGCCCCCTTCAGGGTTATGCCAAGTTCTATTTTTCCGTGCCAGAATGTTAATATCTCTGGGCAGAAGGCATGGTTACCTACAAAAAGATCACGAGGGTGCCATAATGGTTTTTATTGCCTAATTAGTGGTTTGGTCTCATCAGCTTAATAATCACCTTGCAAGGAACCATAAAAACGCACCTCTTTGTACGCATCGCTAATCAAGTTTGTCAACTCAGCATTTGTTGTTACAATATTATTTTGAAGGCAGTAGTCAAATATATCAAATAAGATCTGTCCATACAGAAGGCCTGCATCTGCCAAATCTACTGCCTTTTCAGGGGTATGTATCCATTCTTCAGTTGTATATGTTTTTTCTCCTTTGTTTTGGTATGCTTCTGGGTTGTTTAATTAATGTTTGCTGTATGTTTACTTTTTACTCTTGAGGATCTGTGTAACGCTGGATTTAGATAGCTAACGCACGAGCGCAAAATCAAGCAGAGAGAATAATTTATTAAAGCAATTTAAGATAGCAGAATCAAGGAGAAGGTTGAGTTTAATATTTTCGGCGGAGCTGGTCAGAATTTCGCTAAATAGCCAAATGATGAATCAAGAATGTTTGCACAATCGATGCTTAAAGGTTGTCTAAGTTTTAAAAAATCTTCTGTTTGGGTTAATCAGGACTGTGCAGATTTTAAACAAACAATTCCCCCGAGGATACCCCCCAGGGGATATAGGTATAAAGTGACTGTCCGTTAGTTGTACCCGATATAGCAGGTTCTGGTTCCTGTTTCAGGATCACCAGTTGAGTCGAACCATGTAACAGTAAATCTAGCGCTAGCTTCGTTGAAAGAGCTATTTCCAATGCTAAAATTGCTTAAATAATCAGGAGCTGAACCGTCTTCCTCTAGAAAAAGGTCTTCAAGATCGTCTTTCCCTAATGCTGTAACAACGTCACAATCGTCAGCAGCGTTCATGAAACTTTCGTTGTTTACGCGTGCTCGGGTATACCCTTCAGTAGCCAGTGAAGATAATGAAGCTGCTAACCCGCTTGCCCTCGCCTGATCCTGTAGACCCGTGAACTGCGGTACAGCCAGAGACGCCAGTACACCAAGAATCACCAACACAATCACCAGCTCAATCAACGAGAAGTTGCCATTTCGGGATAAGCCGCGTCATATCAGGGTTTAGACGGCAGCGTGCGTTTCGAGTGCGACATTACTTATCATATACATATTTTTTGAGTCAGATAACAGGATATATTCGGTTTTAATTCTAAATCGAGTATATCCTAGGAAATCCTCAGATCGCGCCAATTTTTCGCTAGCAAAATAAAACCAAAGTTAGGCGCGATCAACCTATCCTATGCTTAACAAAAAAATTCAAATTCTATTTTCTTTTAAACATACCTCCTCTTGCAGTTATTGGCTCCCCTTTTTCGTATCGTTCTTTTAAGTATTCTAAAGCCGCAAGGTTTATTTTAATATAAAAACCTTCATTTTTGTTTAAAACCAACTCTACGCCGATATTGTTAAAATAGGTTTTTAATCTAACCACAGTTCGGTGCTGGGGAGAGGTTTCCAATCGCTCCAGACGGTTCAATGTAGGAACCGAGATACCGCTACCATTGCTTACGTCTTTTTGACTTAATCCCAGGAAAGCTCGGGCTGCACGAAGACCTGCTACGAGGGCCAAAACCTCTAAATCTATCTCAAACACCTTGTGTGATGTCTCAGACATCAGTAAAATATCCTCAGACTTATCTCGCGAATAGTGAGATAAGGTATAACAGAGGTGAAAAAATGGCAACAAAACTCACTGAGGCAAATATCCGCAAGGTATTCAAAAAAGCTAAAGAAAAGAACCAGACACAAAGGCTGTCAGACACAAAGGTTTCTGGGCTTCTCCTGGAGGCTAGGGCGACTGGCACCGGAACATATTACTATCGATACAGGGATGAAGACAATAAAATCCGTCATCTGAAAGTCGGTAAGTACAACGAAGTTAAAATAAATGATGCTCGGAGTATCGCACAGGACATAGCGTCAAGAGTTCGTAAAGGAGAGGATCCGCAGCAAGAGCGATCAACACAAAGATCGAGCTACACGTTTGAGGAATATTTTTACGAGCAATATCTTTCGCATTCAAGAAAAAACAAGAAGAGCTGGGCAACAGAGGAGAAATTACTAAAGGGGCACGTTGTTCCGCGAATCGGGAGTAAGAAGATGGCGATCATTCGTAAAAATGATATTCAAGATATCATCGATTACATGAGGAGTGAAGAGTACCAGGAATCATCAATTAAAAGAACAATTGCAATTGTTTCTAACGTCTTTACAAAGGCCATAGAGGATCAAGTGCCTGGAGTTACCCAAAACCCGGTGCGCGATGTCAAAAAACCGAAAGATGACAACAAAAAAGAGAGGCTTCTCTCAAAAGAGGAAATAGAAAAACTTTTAAGGGCTGCAAGAAAGGCACCTTCGCAATCTGTGTGGGTGACACCCCCATCTACTCACGCAACCGCCGATCTACATATTGTGCCATAGGGTGAGGCAGGCAGATGGGTGAGCTTGCCAGCGATCAGGTAGCAGATGGAGATCAGATTCTTCGTGGTGCGAAATCCTCGTGCACGGCCCTTGGCAACTTGAATCTGACCGTTCATGCTTTCGACGGGGCCGTTTGATAAGCGAGAGTCAAAGGCGTTGAGGATGCCCTGCCAGTGAGCCTTGAGCGTTAACGCTAGGCGCTTGAACGGCTCCAGCCGGCAGCGCCGAGCCCAACTGTACCAGGCGTTGAGGTTTTGCTCAGCCTCTCTGCGAGCACCACTGCCGGTCAGTATTTCGCGCAGTGCCTCCTTGAGCCGCCAGGCGCGGGCTGTTTTCAGCCTCGTCCGTGACAGGTAATGCAGTTCGGTGAGCTGCTTGAGCGTGTGCCGCGAGGCATCCTTAAGCCAGACCCAGCGAGTGCGCTTGAGCGCAGGCTCCAGGCGCACCTCGGCGCGGCGGACCTCGTCGACTGCCTGATTAGCCAGCTGCACCACATGGAAGGCGTCGAAGGTAATCGCTGCCTCGGGTAGATACCGCTGCACGCCGGCGATGTAGGCCTTGCTCATATCGATGCATACCGCCTCGACAGAGTCCCTATCGCCGCCGTGATCGTGTAGATCCGCCACAAACGCCCCAATGGTCGACTGGTTCCGCCCTTCGCAGGCAAAGAGTAGGCGTCGGTCATCAAGGTCCTGGAAGACAGTGATATAGTTATGCCCGCGCCGCGAGGCCGTCTCGTCGATGCCGACAGCGCGAACGTTGCTGAAGTCCTCCTGAGCACGGGCTGCTTCCACGTAGTGGTTGAGGATTCGCCAAATTGGGTCATCACCAACACCCAGGTAGTTAGCGACCTTCTGGACCGACATCTGCTGGCAGAGGGTAATGACCATCGCCTCGAACAACTGCGAGAACCCGCTGCCTGGACGCGCCCAAGGCACCTCGACCTGAGTGGTCTTCCCGCAGTCCTGACATCGCACCCTGGGCACGGCGGCATGGATATAGGCCTGGTGCTCGAAGAAATGCAGGTGCTGCCAGGAACGCTGACGGGTGTCATGAACTGCTTGAGCCTCGGCGCCACAGGCCGGGCAGGCGAAGCGGCTGCCGCTGGTGAAGGTGATATCGAAGTCGATGCGCTTGGCCTGCGCATCAAAGCGGATGTCACTGACTTTCCAGGGTGCACTCAACCCAAGCGCGGCGGTGAACAGGGCGTGCTCAGTAGCCATGGCAACTCCTCGCAAAAATGGTGTGGCGAGGCACAACATATAGGATCACACCCAGCGTTGACTACCTCGTCTTAAGCTGCTGTCACCCACACAATTCGCGAAGGGACCGCAAGAAATCATTGCCATCCGCACCTATACAATATTTTAAGGCTACTCATATTAACTGGAGCTAGACGCGGGGAGGTTTTGAATGCCAGATTCAAAGATTTCGATCTTGAGCACAAAATATGGTATTTGCCAGATGGTAAGACAGGTGCGAGACAGATCGTGTTATCAGATAATGCGGCTTGCCTTGTGAGCAATTTACCAAGACACAGCGGAACAGATCTCCTTTTCCCGCAGCCAGGGACAAACAAACCATATAGCTGCATCAATAACCCTTTCAAACGGGTTCTTGGGAAAGCTGAACTAGATAAAAGCATTCGTGTCCATGACTTGAGGCATAGTTTTGCTTCTCATGCGCTAAAAAACGGTGCCAAGCTTCCCGAGCTTCAGAGAATGTTGGGCCACACACAAATTACAACTACTATGCGTTATATTCATCTTCAAGATGATGATGTAAGGGATAGGTGCAATGCTGTCGCATCACATCTCGACGTCTAAGAGGCCACTAAAAGAAACCCCTCATCTTCTAATAAGCCAAGATGAGGGGTTTGATATGTTTGGCGAACCGCTTACCACAACCTTTGCATTGAAGGCTCACACACAACCTAGCATCTCACCCTCATCATCTACTCAGAAGCTCTGTGCGGCTCTCTGTGGCTTCATTGTTGGGGAGGCAGTGCACCCCTACCGACCCCTCTGCTAAACACAGCTCTTGTCTTCTCTATCCATTCCCTACGAAAAAATAGAAGTCGTCCCTGACTTCATCACATCCAGAGAGTCATATCAGTTTGTTATACCTCCCATCAAGATTCATCAAATCGAAGGCGAAAACCTCCGATCCAACAGAACCAAGTTGTTTCGTTAAGTACTGGTAAAGAGCCTCGTCATTGTATATATGCTGGAAGCTTGATTCAAAAGAGTGGAAGTCTGGTTTCCCTGTTCTTTGATCAACATTGTTCCAAGTCTTTTCTAATATATATTTGAACAACTCTTCATTCCCGCATCTCCTTATTTGGCTATCCGTAGATAATTTTTCAAAGAAATCCCCAATTATCAAATGAACATGGTAACCATGATATTGTGACTTCTCTATAAAAACCAACCATTGAAGACTTTTCTTAGATCTTTTGCCGAAGATTTCATTGTTGAGGTTCTTCAGGAATTTGCTAACAACATTCTTGGACTCTTCGTAGGATGTAATCTCATTCCTGAAAGTTAATGTTACGAAGTATTCCCATTTTATGTTGTTGAGGTTAGAGACCGTAGTTAACCAATTTCTTACCTCTGATCTTGCAAATTGTTTCTTGTTAGCTTGAACAAGCTCCTGGTTAGGTAAGATCTCTGTGAAATCTTTTTTATTAACGATTCCATTGAATGCTTTATGTTGGCAGTGTTTTTTATTTTTTAGAAGGCTATATTGATGTGATTGCTGATGTATCATTTTTTATTCTCCCTTTTTTGTTATTTCTTCTTGGTTATCAATGATCTAGACACTATTAAACCAAGGAAAGCTCTCAGGTAGCTTTCGCGGTTTCATTCGTTGTTGAGGCCCAGCTAACGTCAACAACCAATCGCCTATAGCGTTAGAGGTTGCTCAACTTGTTAATAACATCGTTCAAAATCAAACACAGGGAAGGTAAGCAAGACAGCAAAGAGGAAGGGAGCATCTATAAAATTATCTGGCTTGCTAAAAGAAAGTGATATCTAAATGGCCTTAAAAGACAGTAGGCGCCTATCTGTCATAAATATTTATAGCAAAAAGAAAATATACGAAATGAGCAAAGAAAATTTTTATATCATCATCGCTGGTGAAGAGATCGGGGCAGACGAGCTTGTAAACGGTCAAATGGCTGCAAAGATAACAGGCTTATCTGTCCGTCAGCTTCAGAGGCTTCGTCTTGAAGGGCGCCTTCCTTACTACCAGTACTCAGACAACTGTATTCGCTACCTTGTGCGAGACATCGTTGAGTTCTCTGAATACTCAAGGCATGAGAAAAACTAACGATAATAAACTTCTATCATGGCTACATGCAGCAACTCATGCAAAGTATGGTTGGATAGCTCTATATCTTCGTGAAAGCAATAGTACGATATATCAATAAAAGTTTGTTCCGGTGTAAGACCGTGGTGCAATAAATCAACAAATTTCATATAAACAAACGCCCAGTCTTCAAATTTTTCTTTCATTGTTCCTCCTTTTGTAGTGCGTGTTCCAAAAAATTTATATTAATGTTATTCTGCTCCTTTTCCGCTCTAGAGATTCCAAGTATAATTGGTTCAGATTCTCGGTCAAGAGACGCAAGAGAAATTGACCAGGAAGGAATTTTGTTATAAAGATTTTCTGAACAAAAAGGGGAAGGTTTATATTAATACTATTGTTGGCCGCTTATGTTCTGGAATTTGGTGATAGGTCCTTGGTGTTCCCTCAATGGAAGGAGGTTTTATAGTAATAATTTCGGGTTCAGGTTGTCATCAAGATGTTTGTACGAACCAGAGATAGCAGAGCAGGGCGAAAAAGGAGAGAATGGATTAATTATTTTATCGTAGAGGGGAGGGATAATAGAAATGATCGGATGTGGCGATGGTGAGATCTTAAAAGAACGAATTTGAGATCAAGAAACGAAAGGCCTACGATACTCCTGAAAACAATAAAGCACGGCAGCAAGAAGCAATGTGGCAGCAATGAGTTCTATGGATTCTTCTACGAGGCCATCCATGAACTGAAAAGAAGAGATAGAGGTGTCAGTTGTAGACCTCATCACTCCAGCGTAGAGATATTGCGCGGCCTTCTATTAGGCGTTCTTGGAGTTCATGGGTTCATGAGCCAAAGAATCTGCACCAGTCGCTAAGGTTCCGTGTGGCTGATGCAATGGCTTTTTACACCGCAGAGAAAGAGACTAGGCGATCAGTAGAGGCCTTTGCTGGGATGAGAGGGCGTTTCTGCGCGCCGACGAAAAGATAGGGCCAAGAGCAGGAAAGAGGGTACAAGGGATAATACTCTTGATTCTTCTACGGCTCAGGAAGACAGAGAGCCCGGTTCATGGCTTCTCATGGCTTCATTGCGGCAGTTGTAGAGGGCTATAACTGAGGGCACCCTTTGTGGTTGCTGATGCCCTTGAGGATAGCCGAATCGTTGCACCGAGATTGCCATGATTGTTTGCTTACCGCTTGATTAGCCAAGCATTTTTTAAGCGTATCTTGAGGTTTTTAATTAAAAAACGGTGCCAAGAAAATTTAATATAAAAATTATAGGCCGACCTGGACCGGCTGTCGTCCTCCATCGAGCCCATCGTGATCAGCATTATCGGCGTGCTGGTGTTGGTCCTGGCGCTGGGGATCTTCCTGCCAATGTGGCAGTTGGGGCAGGCGGCGATGTAGTTGGTGACATTAGAAAAGGCCCCCATAAGGGGACCTTTATACTTACTATGAAGTATCAATTAATCATCACTACTTTTGTACACAGCGGTAAGTGGTCCCTCCAGTTAAATTACCATCATCAGTGTCTACTTCAGGAAAAGAAAACTCGGCCTCAACATCGTTGCTGCCATCACACTCGCTCCCGTCTACTGAGAATCCCTGATCATCCAATGGAGTTCCATCGAGGTAATTATCCCAATCATCTGGCTCTGACCATTCGTTGCCTTGTGCGGCAGCCTTAGTTGCCTCAGCGGTCGCCGCAGAACTTAGTGAACTTGCCAAGCCTGAAGCGCGGGCTTGATCTTGAATACCTGTGAACTGCGGAATGGCAATTGAGGCCAGGATGCCGAGCACCACCAGCACAATGACCAGCTCAATCAACGTGAACCCCTCTTCAAGCTGACGTCTCCGGCGCTTGGCACTGCTATTGCGGTGGACAAAGTTCTTAGCTAGCTCAACGAGCCCGACTCTACCTGTAGCCTGCTCGGGGCTCGAACTGCAACTATTTTCATCTAGATGGATTTGCTCTTTCATCTCTTTTCCTCTCTTCGGCCGTGCTGCCAAAGTAGATTGGCAAGCCATTAATCAAAACAATTAGCATGTAAGCATAACTGTAACTATTAGATTATACCCCAAAACACACAAGTAAACTGTTTACCTCCATGAAATCTCCAATCATCAACCATCACATCGCCGCTGTTCCCAACTGCCACATCGGCAGAAAGACCCCGAGTGCAAGTACCAAGATCAGCACCGCTATGAACGAAATCACAATGGGCTCGATGGAAGAGGAGAGCTTCTCCAGATCGACCTCAACCTCGCGCTCATAGAACTCAGCGACCTGATCCATCATGTCCGAAATCTGCCCAGTCTCTTCACCGACCGCAAGCATCTGCAACACCAGCGGTGTAAACAGCCCGCTGCGCTCGCTGACCGCATAGAGACCCTCGCCGCGCTCGATGCCATCGCGTAAACCGTTGATGCCTTGACTAATGTAGGCGTTATCGGTCGATTCGGCGACCGAACTCATGGCGCTGAGGATCGGTACCCCTGAGCGCAACGCCATAGAAAAGGTACGAGCGAAGCGGGCGAGTAGAGCGCGCAGTAGGATGTTGCCGACTACCGGGATGCGCAGCTTAAGACGGTCCCACAGCAGGCGACCGTTAACGGTATTGATGTAGGCGCGCACACCGAAAAATACCCCGGCTAAGCCGGCGAAAATATACAGCCAATAGTTAGTAAAAAACTCCGAGGAATTGATAAGGATAACCGTGGTTAACGGTAGGTCGGCATCCATTTGGGCGAAGATATCTGAAAAGGCCGGGATAACAAACAGATTGATAATAACCAGCGCAGCAAGAATCGCTACCAAGACAAAACTCGGGTAGCGCAGCGCCTGCTTAACCCGATCGCGGGTAGTGCGCTCCTGATCGAGACTGGCAGCCATCCTTTGCAGTGATTCCTCAAGGCGGCCCGAGTCCTCGCCGACGCGGATCATGGCCAGCAGCAGGGTAGGGAAGACCTTGGGGTGCTCACGCATCGCCTCAGTTAGCGACTGACCGCTCTCCAAGCCGCTGGCCACCTCGCGCAGGGTGCGCTTTAGCTTAGGGTTGGAGGAGTTGTCTGCAAGCCCGCGCAAGGCACGGATGATCGGTACACCGGCGTGGATCAAGGCGTGGAGCTGACGCACGAAGGTAACCAGATCCTCCAGCGAAACCGATTTTTCTGTCCAACTTCTCAGCAGGGCGTTGAGGTCGGTGTGGGCGACACTCTCCGGCGGTTTTTCCTTGATGTCGATAGGGGTTATATCGAGTGCCACTATCTCATTGATGGCGGCGTCTAGCGAGGGTGCCTCGACGCTGCCGCGTATCGACTTGCCATCTCGGCTGCGGCCTTGATAGATAAACTCAGCCATGCCTATCCTTGCGGTCGATTGGCGCATTGAGGGCGTCGAGTAGCGAGCGGTTATCTATCGGTGCTCGGTCCTCTGCTGGCGGGGATTGGTCGCTGCGCTCCTCACTATTAACTGCTGGACCACTCCCATCAGCGGCTCCTTGCTCGGCTGCCGGATCAGGCTGTGCCACTTCCGGTTGATCTCCGGCCTCATGGTCAAGTTGCTGTTCAGCCGCCTGGCTATCCAACTCGGCGATCAGCGAGTCGATCTTGGTCTGGTGCAGACGCAGTTCGCTCTCATCGATCTCGCCGAGCACGCGGAAGACCTCCTCAAGGGTAGTTAGCCCCTTGCTGGCATAGGCCAGGGCGACATTGCTCATCGGTTGATAGTTGGGGTCGGCAGCGCAGGCGGCGGCAAATCCAGCCTGATCATTGTGGCGGAGGGCGTTGATCATATCCGGGGTCAGTTCAAGCAGCTCGAAGACGCCGACCCGGCCGCTGTAACCGGTATTGCTGCAGGCATTGCAACCCTTGCCGACATAGAGCTGATAGTCACTGGTGCCGAATGCCGCCTCCAGCCAGAGCTGTTCCAGTTCAGAGGGGGTGTAAGGCTCGCGACACTGGGTACAAATGCGGCGCAGCAGGCGCTGCGCAAGTATGGCGCGCAGAGCCGAAACCAGCATATACGGCTCAATACCCATATCCAGCAGGCGGTTGGCGGTGGCGACAGCATCGTTGGTATGCAGGGTAGAGAAGACCAGGTGCCCGGTGATCGCCGCGCGCATGCCGATCTCGGCAGTCTCCTCATCGCGCATCTCGCCAACCATGAGGATATCCGGATCTTGGCGCAGGCAGGTACGTAGGACTCGGGAAAAGGTTAGCCCGATCTTCTCGTTGACCTGCACCTGATTGATGCGCGAGAGGCGGTACTCGACAGGGTCCTCGACGGTAATAATCTTCACCCCAGACTTGTTGAGCTCCTGCAAGGCGCCGTAGAGGGTCGTCGATTTACCCGATCCGGTCGGGCCTGTTACCAGAATCATGCCGTAGGGCATGTGGATCAATCGGCGAAGCCGACGCAGCATATCCTCCGGGATGCCGGTCTTCTCCAGCGAGGCCAGTCCGCCGCTGAGATCGAGCAGGCGCATTACTACCCCCTCGCCGTGCTGCAAAGGCAGTGTCGAGAGGCGGACATCGACGCTGCGGCCGTGGACCCGGATATGGAAACGGCCGTCCTGCGGTAGGCGTCGCTCGGTGATGTCCAGACCGCTCATGATCTTGAGCAGCGAAACCATGGCGGAGTGGATATTACGCTGGCGGAAGATCTGCTCTTGGAGGACACCGTCGCGGCGCATGCGGATGCGCAGGGCGTTTTCATCCGGTTCGATATGCAGGTCAGAGGCGCCGATTTGCAAGGCGTCCTCGAATAGCGATTGGAGTAAGCGAACAACCGGGGCACTGGCCGCGCTCTCGCCGATATTGAGGGTGGCCAGATCTATGTCATCGCCCTTGTTAAGCTCACTGGCGAGCTCCTCGGCGATGTTGCTGATCTCTTCGGTGCGCCGGTAGACGAGGTTAATCAGATCGTTGATGGCCGATTCGCGCGCTACCCCGATGCGCGGCGGCTTTTTGAGGACACGGTTGATCTCGTCAATGGCGATAAGATCGCTTGGATCGGCCATAGCAACAAGAAAATCACTCCCCGTCTCCTCCAGAACCAGGGCGGTGAAGCGGCGGGCATAGCTCTCTGGCAAGTTGGCGGCGGTCTCCGGGTCTATCCAGTAGTTGTTGGGGTTGACGCGGGGGACTTGGAGCTGTTGGGAGAGTAGGTCAAGGATCTGATCCTCGGTTACGTAGCCGAGTTCGATAAGCTGGTGGCCGAGCTTGTTGCCGGTCTGCTTTTGGACGCGCAGGGCCTGTTGCATATTCTCTTCGGTGATGAGCCCCTCTTGGATCAGCAGATCACCGATTCGTATCTTCTTGCGCAGCATTGCCTCAGTCCCTTAACTGCTCAATTCTGGATTCGGCATAGCTGGCGATCTCGGCGCTCAGTCCTAGCTCCACTGCCCTTTGCCAGGCCCGCAGGGCGGACTCCTTATCGCCCATCGCTTCGGCCGCCAATGCTTGACCAGCCGGCCAGATCCCGTTATCCGGTTCGTGGCGGGCAAGGCGCGAGTAGTACATCAGCGCCTGGTCGTGCTGGCCGATCTGACGGTGGAGAGCGGCGAGGTGCGCCTCGATGGCCCCAGCTTCGCTGTCATTGCGTGCGCTAAACCTTTTCAAGATGCTTATCGCCTCGTCTTGCTCGCCGGCCTGTTCTGCCAAGTGAGCGTAAAAGCGGGCGCTAAACTCGCTGTTATCGCCCTCCTCAATGCCTTCGCGTAAGACCTGGCGAGCACGTTCACTGCGGTTGCTCATCATCAGGATGCGGGCGTAGCCTTGCCGTGCGCTGCTCAGGGCAGGCTGGAGTTCGAGGGCACGCTGATAGGCGCGCGCGGCACTCAGCTCATCACCCGCCTGGGCATGGGCCTCGGCATTTTCGACCAGCTGTTGGGCGCGTATTTCAGGGTCGGGATCGCTCGGGTTACGCTCGAAATGGCCTGCCTCTTGCGCTGAGGAATCCTCTGCCTGCCCCGAGTTGTCGGCTGTCGCCACGCTGCCCACTCCAATCGCGAACCCAGCCAGACAAAACACCTTCACCAAAAGTGTTAGCGAATATTTTGCCATCAGCGTCTCCCCGGGGTTGTCCCGTACATCCCCCGAATCCTCTCGGAGTGGGCATCGATTTCGCTGCGCCAGGTATCTTCGTTGACTATGCGTGGGCGCAGCAGGATGACCAGTTCATACTTCTGCGACTCAACTCGCTCATACGAAAAGAGGCGACCGAGCAGGGGCAGGTTGCCGAGCAATGGGACTTGTCCGGTGATGTTTTTATCGCGTTCCTCAATGAGCCCACCGATGATGATCATCTCGCCATCCTGGGCGCGGACGATGGAGTCTGATTGGCGCACATCGCTCCGGGCCAGATTAAACTCGGTGGTATCACCGCCTGATTCGAGCTGGCGGGGTTCTTCTTGGACCTCGGTCACGGAGGGCTGGACGTGCATGGTTATCCAGCCATTAGCGTCGATCGCCGGGGTGACATCCAAGGCGATGCCGGAGAAGAACGGCTCGAAGGTCGGGTCGAGTTCGGTGACGATAGTGTTATCAATCACCCTTTGGTTTAGATCGATGCCGGTTTGGTAAAACTCATCGGTGCCGACCTTTATGACCGCCTTCTGATGGTTGAGGGTTGAAACCCGTGGCGCGGAGAGCACCTGGACGTCACCTTGACGTTGCAGGGCGCTGATAGTTGCCGAGAAAGATCCCTCGCGGTCAATTCCTAGACCAAAGGTTCCTGAGGGTTCTATACCAACGTCCGCTCCAGTGCTAAGGCTCCCGCTAAGTGGACTTCCTAAGGTCTCCCATTCGATGCCCATGCGGTGCTGGTCACTGAGCTCAACTTCAAGGATACGGGCCTCAAGAACCACTTGTCGGGTGATTGTGCCTTGCAGATTCTCAATAAACTGCTCAACCTGGCGGAGGGTGGCAGGTGTGGCGCGCACGGCTACCGTGCTAGCCTCAGGGCTTACTACCGCGCTGGCGTTGTCACGGTCATGCGCAATAATGCCCTCAATAACCTCCTTAACGTCCTGCCACATCTTTGATTCGGACTCTGTCCTGACACTGCTCCCGGCTAGGGAGTCGCCATCATCACCATCCTGGAGTTCACCTGCTGTGATTCTAGAGCCCGACTCACCGCTGCGCAGGACATTCAAGTAATCGAGTTGGAAGAGGCGCGATTCAAGCCTTGGCGGCAGGACGAGATAGGCCACATCGGTTTGACGGTACTCATAGCCATAAACCTCGCGGGCCAATTCCATGACCTCGGGCACGGAGACATCGCGTAGGGTCATCGACAGGGTCCCTTCGACATCGGGGTGGACAATGATGTTGTAGGGGGTATCTTCAACCAGGCCCTGGAAGAATGGCACAGCGGGGACGTCTTGGGCTTTGATGTCGAACCTTGGCTCTTCGGTCCTGAGCTCGAAGGGGTCGAGCAGAGGTGGGCCGGCAAGCTGCTCTTCCAGCTCGCGCGGAATATCTGGGAGCTGTGCAGGTCCACTGCTAGCCTCCGGTGTCAGCCGTTCCTCAGCCTGTTGTGCCCGCTGTTCAGGGGTTTTGCCCATGCCGGCGCAGCCGGATAGTAAAGTGCCCCCAAGGAGTGTTGTTACTACCAGCGTGAGCACAGCAATATTCGGCTTTGCGGGGGGCAAGGCGAGCGCTACGCTTGGGCCATTTAAGTTGTCTGATCTTTTTATTTGTGTGCACTGCTGTGCATGGATGGATCTCATTGCCCTTTTGCTCCCGGCATTTTATCTGGCTGCAGCCTCTTTTTACCTACTCCGTGCCCGCTGACCGGCAGAAAAAAATCCTCGCCTCTGGCTGTTACCTTTACCCCGTTGGATTCGATGGCTTCGATGCGGAATCCCGCCACTGTCTCACCTTCGCCCTTCCACTGGCCGCCGATATAGGCACTGCTCTTGCCGGCTCTTTGCATCACCATCTGCACCTGGGGCAGCGATCTCTCGACCTGCTCTCTGCTGGGGGCAGACGGGGCTGGGCTAGGACTGGTGCCGGGCCCTGAACCCGGTGGCGCAGTTGGGTCAGAGCGCTGCTGGGCGGGGAGATTTGTGGTCAGGCTGAAGATGGTCAAGCAAACGGCCAATACTGCCAGATACCGCAGTATTCTTTTACTGGAGCTGCCATAATCCATCATAGTCACCTTACAGGCCCAGCCACTGGCGGTGGCCACTGAGGGTGTGCAAGCGTAGTTTTACCCTAGCCCGCGGATGGTCGATCACCTGGTAATCGATCATCTCCCATGCAAATTGCCAGGGCAGATCCTCAAGCTCTTCCAGGTAGTCTATTGTAGACATGAAGTCGGCCTCAATGACCAGTTCTATGCGGTGCCGGAAGACCTCCGGGGTTGCCGAGTCGTTCTCCTCGTCGGGCTTAATGGCGAGTTCGGGGGGCATCCGCTGGAGGCTAACAAGATCCGCTCCGGATCTTTCGGCGAGGATCTCCTCGAGTACTCGGCGCATCATCTGCGGTTGAATAAAGCTGGGTATATCGGCCGCAGCGCTGTCATGCAGCTCCTCCAACTCATCTTCTAGTTCAGCTATCTCAGCACGGAGCTGATCGTCAGGATCTTCTATCGGGTCCTCTTCCAGGCTCTGTTTTTCACTGCGTAATTCTTCGACTTGCGATTTTACCTCAGTGAGTTGGGTTTGCGCCGTGTTGATCCGTTGCTGTGTCGGCTGATAAGAGCCGTAATACCACAAGGCCCCAACAAGGGCGATTGCGGCGCCGAGTAGGAGGACTCGCTCGCGGGTAGTTCTTTGCTCAATGGCGTCTACCACAGGCTGCAAGAGGGTCTTGATCTTGGTGCGGGGCGCTGCCATTACTCTATTCGCTCGGGTCAGTAGTTATGGTTGAGGCGCGAAACTCCAACGCGCCCGGGAAGCTGTTTTCCTGTTCAGGACGGTAAATGGAAAGATCATCAAAGTAGCGCCCTCTGAAGGTTTCCTCATTGGCGAGTCGGTTTACTAGATCAGCGACGTTACGGGGGGTTAGGGTTCCTCCAGTGAGGGATATGTCATTCCCTGCAATGGTTATGCGGGTCAGCCACAAACCCGTGACGCGCTGGTTGGCTAGGGTGTTCAAAGTCTGCGAGAAACCGCCGAGGGCTTCTTGTTCGATGCCGTGGATTTGTTCAAGGAATTTTGTGCGCAGTTCCCTTTCCCGTTCAAGCTCGTCGCGTTTGGCGATGAGATCGGAGTCCGGTTCGCCCGTGCCGCGTTCATCTTTGATTGTGGCTATAGCAGCGGTGAGCTCTTGGCGCTGCTCCTCGCCAGTAGCTAACTGAGCTTCTAGTGCCGCTGCGCGCCATACCATGACGATGGAAAATAGAGCCAACAAGACGATGCTGCCGAGAAGATATGCGCCCAGCGCTCTAGCCCCCAGGGGGTTAATGCGTTTGCGCTCCGGAGCATACATCGAGGCGCTGGCAAGCTCCGGATGGGGTAGGGCGGCAGCGAGGGCGAGCAGGCAGTGGCCTTGGGTGGCCGGTTCCGATGTAGGAGCTCCCCGGCCTTCTTCTCCGGCAGCCAGCGTTGGCTGCTGGAGCAGGTCGTAGGGGTTTAGCCTGTCAGACTTTATCGGTAATGCCTGATCGAGGTGGTCGATCAGGCGATCTCTGCCGCTGCCGTTGAGCGGCGGCACCACGCAGAGGCTGGTCGGGGAGGATGAGAGCTGGCCGTCATGGTAGTCGAGAGAGTATTGCAGTTCGGTGGCAATGGACTGGAGTGGTTGATCATTGCCATGGGCGGCGGCGATCTGCTCTGTGCCAGTGTTATGGCGTCGGGCGAGCCCCAGCCTGGAGCCGCGACAGATGGCAATAACCCCATCATTATCGCCAACATAGACTATAGCGACACCACCTTCGGCTGCCGGCATTTTGGCCGCCAAGTTACTTAGGGCGGTCTCGCGCATGAGAACGGCCTGCAGTTCGAGGTCCGCCCCGTGGACCGTTCGCGCTATTGCGGCTATGCGTTCTTGCCGTGCAATGCCGGCTAGGGCAATTTGGTGGTCGGCTTGGCGGCGGTCGCTGTATTGCAGCTGCGCCGCTACTGCCATCTGCTCAAATGGGATCTCCACCATGTCCTTGAGCCGAAAGCGCAGGGCTGAGGCAATCTCAGCCGGCGGCACTTGAGGTGCATCGATATGGCGTATCTCGTAATCGCTGCCATCAAGTACCACATAGGCCGGCGAGCCAGCGCAGTCATTGCGCTCGACCAATTCAGCGAGGGCCTTTTCCTGGGTCTGGGGAGTAGATTTGAGATAATCGGAGCTGATCAGCTCACTACCATCCGCCGAGACTATAGTGATGGCCACAAACCGTGGTGCCAGATGTACGCCCACGCGCATCTGCGCACTCTCCTGTTGCCACCACTCCTTTAGCTTGTCGTAATACATGTCGGCATCCACCTAGGGGGGCAAGGTGCTGCGCATTTCAGGTTTAATTCCTCCTCTTGAGAGCCTCTATAGATAGTTACGTATGGCTATTCGACTCCTGCGATAAAGGTGTCCGTAAACCGGTAGGTTTTGCAGCGCATAAAAACCCACATACATTAAGGTAATATCTTTTTTTGAATTAAGCAAATCTTATTGCGCTCCGCTCGATGCTATTTGCAGAGCCTCGCGGATGTGGCCTTGAAGCCCGACAAAGTCGCTGTTTGCCAGTGCCTTTTCGGCCTCTATAAGGTGTTTGTTGAGCCTGTGTAGGATAGCCTTTTGCTCGCCGAGAGCGTTGCGACTGGGTTGCCTTTGAGCCTGTTCCGGCTCATAGCGCGGCAGTTGGCGATAGAGTCTTTGTAGTGCTATGCGGGCATGTGCAGAATCTATATCCTCGCCGCGCAGGCCATCTAAGTTGCGTCGGGCGGCGGCTATCCTTTGGCTAGTTGGTTCGCCCCGCTGCGGATTAAATTCCTTAGTCAACTTCTCCAGCTCACGACGCGCTCGGCTTGCTTCGCTGTTGGTGCTGACAGTTTTGGTCAGTGCTCTTATATTCGCTTGGCGAAAGCGTCGCTGGAGCGCAGCTTCTGGGGGTTGCGGTAGCGCATGCCAGCGGGCAGTTAGGTTACGCCGCCGACTCTGCAGATTAGGCAGGTAGCTAACCGAGGCTAAACCGTGCATAGCGCGGCACAGTGCCTCTGGCATATTGCTAGCCCCGGCTTGGCTGGTCGGTTTGTGGATGTTTTCGGCTGGCTGGGCAATTGGGGCACTACTCTTGAGTGAATCCGGTTGCTGGTGGTAACCCTTGGGCCGGGCTTCGGCAACTGCTGCTTGTGGTGTGGCCGCGACGTCATCATCCGCTGTTGCTGTTGCATCTGTCTCGGTTTCTATCTCTGATTGTGGGCAGTTTGCCGTCGCCCGGTAACCTTCGTCCCCTTTGCTTTGGGCGCGCTGAGCGAGGTCGCTGAGGGTCTTATCGTCTTCGATTAATTGGGCTGCAAGGCAGCGATTGCGCTCTTCGTCGTCGTGCAGAGCTATCTCAGCGAGCAGTGCCGGTTGCTCTATGCGCCGAATGGCGTGGCGGCGCGCTTCGGGGTCGCGCGCTTTCTGGGCGACATAAGCAATTATGGTGGGGTCGTTGCATAGACCAAGTTCGCGATCGAGCGTGGTTGCATCGCAATCCCCGACTAGGAGTTGGCGGTAGCGGACCGAGGCAGCATTGCGTACCCGCGGGTCGGCCTCCCCGTGCAGATATGCTCGGAGTAGGTCGAGGTCGTTCACGCGCTTTATCGCTGCCTCGCGGACTTGGGGGCTGTTGTCCTGTATCAAACGCCCCAGAACCATGCCGCGGTCAGGATTCTGGATGGACAATTTCATTGCCGCCTGGCGGCGCACCTCCGGGTCTGGGCTGAGCCAGCGAGGCTGGAACAAGCTGGTGAAATTCTTCCAATGCGCCATAGGTTTACGTGGTCGGCTTAACGAACGCGGTCAGACCGTCGACACCGAATACCTCAACGTCCTCCCCTGGTTTAAAAGAGTGGTGATCAACACTGCGAGCCTGCCAAATCTCACCTTTGACGCGTACCTGGCCCGGTTTGTTGGGGGTGATTTCCCGCACCACCTCCCCGCGCTCGCCGATCAATGCCTCCTGGCCCATAGGATAGTACAGCCAGGCGGTACGTGCGAATACCGGGTATAAGATTAGGTCCTTTATCAGCCATGCTATGAATATGAGAATCGCAGTGCTGGCACTGACCAGGTTGTGATTAGCTGCAATAGCCGCCAGGATTGCGATAAGCAGCAGTCCTGGCAACTGGATAAGCCAATAGCTTATGGCCGGGTGCGTTCCTTGTTGGGTGCGCTTCAACATAATCTATGCCTTCATCCCAGGCGCCAGCCAAGAGTTAAATTTTGCCCTTCAGGCGCAACAATTTCTGCTCATGACGAAGACCGAGGAAGAGGCTTGCACAGATTAACAGAAGGACTACGGTGAATGGTAAGCCGGCTGTTACTGCCCCGGATTGCAGCGCCTCGAGGGCGGCATCGCCACCGGCGTAGAGCAGTGTGCCGGCGATTAGCCCCTGCAGGATTACCCAATAGATGCGCTGAACCTCGGGGGCATTGGTCTTGCCTCCGGAGGTAATACTGTCGATTACCAGCGAGCCTGAATCTGATGAAGTAACGAAGAAGATCAGTACCAGGAAGACCCCGATGGCTGAGGTCAGCATAGCCAGCGGCAGTTCGTTGAGCATGTGGAACAGGGCCATCGACTCATCGTCGCCTAGTCCCGCGGCAAGGTTACCTATACCTTCACGGGCCTGCTCTACCCCTGTGCCGCCGAAGGCAGCTATCCAGAAGATTGTAACCGCGGTAGGGACGATTAGCACAGCGGTCATGAACTCGCGTACACTGCGTCCGCGCGAGACTCGGGCGATAAACATGCCGACGAACGGCGACCAGGATATCCACCAGGCCCAGTAAAATACTGTCCAGTCATGGAGGAATTTGGTGTCCTCGCGCCCCACCGGGTTGCTCAGCGGTAGGAACGTTTCGAGATAGCCTGTGCCGGTGGTGTAGACGTAGCCGGCAAAGGCGATCGCCCCGGCGTTGACTATGATATAGAGCATCAGCAGTCCGGCGATCGAGATATTGATGTTGCTCAAGATCTTAATGCCTCGATCAATGCCGCGCAGGACTGAGATCAGGGCGATTGAGGTTACTGCCACTATGACCGCGATCTGTGTGGCCAGGGTGTTGGGTACGCCAGTAAATATGTAACTCAACCCGCTCGCTGCCTGTTGCGCACCTAGGCCAAGCGAGGTTGCGAGGCCGAAGACGGTAGCCAGTACGGCCAGTAAGTCGATTATATGCCCTATTGGGCCCCAGGTGCGCTCGCCCAGTAGCGGGTAGAATGCTGAGCGCACGGTCATCGGCAGACCTTTGTTGTAGGCAAAGAAGGCCAAGGCCAGGGCCATGATCCCGTATATAGCCCAGGGGTGCAGTCCCCAGTGATAAATCGTGGCACCGAGGGCGGCACGAGCACCCTGTTCGGTTTCGGCCTCGACGTTAAGCGGGGTGCCCCACCAGTCGGTGTAGAAGGCCACCGGTTCGGCGACGCTCCAGAACATCAGGCCGATACCCATGCCGGCGGCAAAAAGCATTGCAAACCAGGACAGTACTGAGAAATCCGGTTTGGCATCGGGACCGCCGATACGTACCTTGCCGACCGGTAAGACAATGAGCAGCAGGCAGAAGATGACAAAGATGTTGCCGGCGATTAGGAACAGCCAGTCGAAGTTGACGCGGGAGAATTCGAGTGCGGCATCTAGGGCCACTTTGGCCATGCCGCCGTCATCGGCAGCAGGATCGGTGAATATCAACGCTCCAATGACAAAGACTATTATCAGCAGCGAGCTGACTACGAAGACCGGGTTATGTAGTTCCAGCCCAAGTGGCTTTATGTTCTGGTCATCAAGGTGGCTGCGGGTGTCGTACTCGCGCTCTAGGGCGGCTATTTGATCTTGCGCCTGCCCATTCTGGTCCGGTTTTTGGCTGTTGTGATCGCTCAC

Protein sequences of DBSCAN-SWA_1

>AP017372|688627:714350|699133_699796_-|BBE11009.1|DBSCAN-SWA
MIHQQSHQYSLLKNKKHCQHKAFNGIVNKKDFTEILPNQELVQANKKQFARSEVRNWLTTVSNLNNIKWEYFVTLTFRNEITSYEESKNVVSKFLKNLNNEIFGKRSKKSLQWLVFIEKSQYHGYHVHLIIGDFFEKLSTDSQIRRCGNEELFKYILEKTWNNVDQRTGKPDFHSFESSFQHIYNDEALYQYLTKQLGSVGSEVFAFDLMNLDGRYNKLI
>AP017372|688627:714350|709173_710742_-|BAU57369.1|DBSCAN-SWA
MYYDKLKEWWQQESAQMRVGVHLAPRFVAITIVSADGSELISSDYLKSTPQTQEKALAELVERNDCAGSPAYVVLDGSDYEIRHIDAPQVPPAEIASALRFRLKDMVEIPFEQMAVAAQLQYSDRRQADHQIALAGIARQERIAAIARTVHGADLELQAVLMRETALSNLAAKMPAAEGGVAIVYVGDNDGVIAICRGSRLGLARRHNTGTEQIAAAHGNDQPLQSIATELQYSLDYHDGQLSSSPTSLCVVPPLNGSGRDRLIDHLDQALPIKSDRLNPYDLLQQPTLAAGEEGRGAPTSEPATQGHCLLALAAALPHPELASASMYAPERKRINPLGARALGAYLLGSIVLLALFSIVMVWRAAALEAQLATGEEQRQELTAAIATIKDERGTGEPDSDLIAKRDELERERELRTKFLEQIHGIEQEALGGFSQTLNTLANQRVTGLWLTRITIAGNDISLTGGTLTPRNVADLVNRLANEETFRGRYFDDLSIYRPEQENSFPGALEFRASTITTDPSE
>AP017372|688627:714350|695870_696221_-|BAU57358.1|DBSCAN-SWA
MSETSHKVFEIDLEVLALVAGLRAARAFLGLSQKDVSNGSGISVPTLNRLERLETSPQHRTVVRLKTYFNNIGVELVLNKNEGFYIKINLAALEYLKERYEKGEPITARGGMFKRK
>AP017372|688627:714350|690739_691231_-|BAU57351.2|transposase|DBSCAN-SWA
MLKATKVRIYPTPEQAEFLNRQFGAVRFAYNKALHIISSQYKRHGLKLNAKKELKPLLAVAKKSRKYHWLNDFDSIALQQACINLYQAFQRFFDPKLASRCPKFKRKQGKQSSYHCMSVGCGDDWIKVPKLEPIKARIHRKLEGKLKSITLSRNRRILCLTAA
>AP017372|688627:714350|691408_691717_+|BAU57353.1|transposase|DBSCAN-SWA
MIEQLSEAFESACEKLECNLLEMDGEADHVHLLIAYPAKLAVSIMVNNLKSVSSRRIRILNTHIPRQSKSAAIWSRSYFACSAGGATIETLREYVQSQATPE
>AP017372|688627:714350|688627_689884_-|BBE11006.1|transposase|DBSCAN-SWA
MATEHALFTAALGLSAPWKVSDIRFDAQAKRIDFDITFTSGSRFACPACGAEAQAVHDTRQRSWQHLHFFEHQAYIHAAVPRVRCQDCGKTTQVEVPWARPGSGFSQLFEAMVITLCQQMSVQKVANYLGVGDDPIWRILNHYVEAARAQEDFSNVRAVGIDETASRRGHNYITVFQDLDDRRLLFACEGRNQSTIGAFVADLHDHGGDRDSVEAVCIDMSKAYIAGVQRYLPEAAITFDAFHVVQLANQAVDEVRRAEVRLEPALKRTRWVWLKDASRHTLKQLTELHYLSRTRLKTARAWRLKEALREILTGSGARREAEQNLNAWYSWARRCRLEPFKRLALTLKAHWQGILNAFDSRLSNGPVESMNGQIQVAKGRARGFRTTKNLISICYLIAGKLTHLPASPYGTICRSAVA
>AP017372|688627:714350|693626_693860_+|BAU57355.1|DBSCAN-SWA
MLDLPLRYLRQLIVGAVADLAKHLNMEVVAEGIEDESTLNMVRELGCDVAQGYFIGRPQPLQGWDLQRGVKQVNTRQ
>AP017372|688627:714350|691857_693564_+|BAU57354.1|DBSCAN-SWA
MIGRGQLGGAVKKHLKPLLGLGAATVLVVAAGGVGSYLYSDSREKDERLWNQALEVDSIEAYEEYLSDCEERWICGYEADARQAVGELEEIELAAAEDERLWSEAQEVDTQEAYADYLEGCQDRLVCEHMADAKEALALLHDRKEALTEDERLWSKAQEKGSLEAYEDYLAGCEERPVCQHEADAREAIGELETEQYAAEDERLWFEAQEADSLEAYQDYLAGCNRRPSCQYEAQAREAIEELEEELSAAEDERLWSEAQEEDSLEAYKDYLAGCDQRLVCQYEADAREAIEELEEELSAVEDERLWAEAQEVDSLESYEDYLAGCEERLVCQYEAEAQEAIEELEEELAAAKKEDERLWSEAQEADNLEAYEGYLADCDERLVCQYKQDAQKAIDSFIGHGNRYRDNRDGTVTDIETGLMWMRCSLGQKWRDGACEQEAEIYTWHEARGEEGYSFAGYDDWRLPEIEELKEIVFCPSGEPSYRGLIHRPDAGFFDRETCEGDDDQPAIDENAFPDTPSSNFWSSSPYADNSSRAWYIDFYHGFDNWLDKGSYGRVRLVRSDSGRRDE
>AP017372|688627:714350|706391_707894_-|BAU57366.2|DBSCAN-SWA
MGKTPEQRAQQAEERLTPEASSGPAQLPDIPRELEEQLAGPPLLDPFELRTEEPRFDIKAQDVPAVPFFQGLVEDTPYNIIVHPDVEGTLSMTLRDVSVPEVMELAREVYGYEYRQTDVAYLVLPPRLESRLFQLDYLNVLRSGESGSRITAGELQDGDDGDSLAGSSVRTESESKMWQDVKEVIEGIIAHDRDNASAVVSPEASTVAVRATPATLRQVEQFIENLQGTITRQVVLEARILEVELSDQHRMGIEWETLGSPLSGSLSTGADVGIEPSGTFGLGIDREGSFSATISALQRQGDVQVLSAPRVSTLNHQKAVIKVGTDEFYQTGIDLNQRVIDNTIVTELDPTFEPFFSGIALDVTPAIDANGWITMHVQPSVTEVQEEPRQLESGGDTTEFNLARSDVRQSDSIVRAQDGEMIIIGGLIEERDKNITGQVPLLGNLPLLGRLFSYERVESQKYELVILLRPRIVNEDTWRSEIDAHSERIRGMYGTTPGRR
>AP017372|688627:714350|693856_694351_+|BAU57356.1|DBSCAN-SWA
MKELLIIRHAKSSWYNPHLNDKERPLAPRGEKAAPMMAQRLVQRGAIPQLIVTSEAVRAQQTARLMAAAMGLDDQLIVLDKRLYNAGPAEWLEIIRDQPDTYQRIALIGHNPAIEETARSLFSLQVAKVPTAAVITVRFGCDRWVQVDPKWSEVVGFDYPKRRG
>AP017372|688627:714350|701802_702306_-|BAU57362.1|DBSCAN-SWA
MKEQIHLDENSCSSSPEQATGRVGLVELAKNFVHRNSSAKRRRRQLEEGFTLIELVIVLVVLGILASIAIPQFTGIQDQARASGLASSLSSAATAEATKAAAQGNEWSEPDDWDNYLDGTPLDDQGFSVDGSECDGSNDVEAEFSFPEVDTDDGNLTGGTTYRCVQK
>AP017372|688627:714350|712243_712651_-|BAU57371.1|protease|DBSCAN-SWA
MLKRTQQGTHPAISYWLIQLPGLLLIAILAAIAANHNLVSASTAILIFIAWLIKDLILYPVFARTAWLYYPMGQEALIGERGEVVREITPNKPGQVRVKGEIWQARSVDHHSFKPGEDVEVFGVDGLTAFVKPTT
>AP017372|688627:714350|712685_714350_-|BAU57372.1|holin|DBSCAN-SWA
MSDHNSQKPDQNGQAQDQIAALEREYDTRSHLDDQNIKPLGLELHNPVFVVSSLLIIVFVIGALIFTDPAADDGGMAKVALDAALEFSRVNFDWLFLIAGNIFVIFCLLLIVLPVGKVRIGGPDAKPDFSVLSWFAMLFAAGMGIGLMFWSVAEPVAFYTDWWGTPLNVEAETEQGARAALGATIYHWGLHPWAIYGIMALALAFFAYNKGLPMTVRSAFYPLLGERTWGPIGHIIDLLAVLATVFGLATSLGLGAQQAASGLSYIFTGVPNTLATQIAVIVAVTSIALISVLRGIDRGIKILSNINISIAGLLMLYIIVNAGAIAFAGYVYTTGTGYLETFLPLSNPVGREDTKFLHDWTVFYWAWWISWSPFVGMFIARVSRGRSVREFMTAVLIVPTAVTIFWIAAFGGTGVEQAREGIGNLAAGLGDDESMALFHMLNELPLAMLTSAIGVFLVLIFFVTSSDSGSLVIDSITSGGKTNAPEVQRIYWVILQGLIAGTLLYAGGDAALEALQSGAVTAGLPFTVVLLLICASLFLGLRHEQKLLRLKGKI
>AP017372|688627:714350|702457_703687_-|BAU57363.1|DBSCAN-SWA
MAEFIYQGRSRDGKSIRGSVEAPSLDAAINEIVALDITPIDIKEKPPESVAHTDLNALLRSWTEKSVSLEDLVTFVRQLHALIHAGVPIIRALRGLADNSSNPKLKRTLREVASGLESGQSLTEAMREHPKVFPTLLLAMIRVGEDSGRLEESLQRMAASLDQERTTRDRVKQALRYPSFVLVAILAALVIINLFVIPAFSDIFAQMDADLPLTTVILINSSEFFTNYWLYIFAGLAGVFFGVRAYINTVNGRLLWDRLKLRIPVVGNILLRALLARFARTFSMALRSGVPILSAMSSVAESTDNAYISQGINGLRDGIERGEGLYAVSERSGLFTPLVLQMLAVGEETGQISDMMDQVAEFYEREVEVDLEKLSSSIEPIVISFIAVLILVLALGVFLPMWQLGTAAM
>AP017372|688627:714350|708491_709169_-|BAU57368.1|DBSCAN-SWA
MAAPRTKIKTLLQPVVDAIEQRTTRERVLLLGAAIALVGALWYYGSYQPTQQRINTAQTQLTEVKSQVEELRSEKQSLEEDPIEDPDDQLRAEIAELEDELEELHDSAAADIPSFIQPQMMRRVLEEILAERSGADLVSLQRMPPELAIKPDEENDSATPEVFRHRIELVIEADFMSTIDYLEELEDLPWQFAWEMIDYQVIDHPRARVKLRLHTLSGHRQWLGL
>AP017372|688627:714350|708055_708265_-|BAU57367.1|DBSCAN-SWA
MQRAGKSSAYIGGQWKGEGETVAGFRIEAIESNGVKVTARGEDFFLPVSGHGVGKKRLQPDKMPGAKGQ
>AP017372|688627:714350|700353_700542_-|BBE11011.1|DBSCAN-SWA
MKEKFEDWAFVYMKFVDLLHHGLTPEQTFIDISYYCFHEDIELSNHTLHELLHVAMIEVYYR
>AP017372|688627:714350|700063_700357_+|BBE11010.1|DBSCAN-SWA
MALKDSRRLSVINIYSKKKIYEMSKENFYIIIAGEEIGADELVNGQMAAKITGLSVRQLQRLRLEGRLPYYQYSDNCIRYLVRDIVEFSEYSRHEKN
>AP017372|688627:714350|705660_706392_-|BAU57365.1|DBSCAN-SWA
MAKYSLTLLVKVFCLAGFAIGVGSVATADNSGQAEDSSAQEAGHFERNPSDPDPEIRAQQLVENAEAHAQAGDELSAARAYQRALELQPALSSARQGYARILMMSNRSERARQVLREGIEEGDNSEFSARFYAHLAEQAGEQDEAISILKRFSARNDSEAGAIEAHLAALHRQIGQHDQALMYYSRLARHEPDNGIWPAGQALAAEAMGDKESALRAWQRAVELGLSAEIASYAESRIEQLRD
>AP017372|688627:714350|694646_694805_-|BBE11007.1|DBSCAN-SWA
MADAGLLYGQILFDIFDYCLQNNIVTTNAELTNLISDAYKEVRFYGSLQGDY
>AP017372|688627:714350|696283_697027_+|BAU57359.1|integrase|DBSCAN-SWA
MATKLTEANIRKVFKKAKEKNQTQRLSDTKVSGLLLEARATGTGTYYYRYRDEDNKIRHLKVGKYNEVKINDARSIAQDIASRVRKGEDPQQERSTQRSSYTFEEYFYEQYLSHSRKNKKSWATEEKLLKGHVVPRIGSKKMAIIRKNDIQDIIDYMRSEEYQESSIKRTIAIVSNVFTKAIEDQVPGVTQNPVRDVKKPKDDNKKERLLSKEEIEKLLRAARKAPSQSVWVTPPSTHATADLHIVP
>AP017372|688627:714350|703679_705656_-|BAU57364.1|DBSCAN-SWA
MLRKKIRIGDLLIQEGLITEENMQQALRVQKQTGNKLGHQLIELGYVTEDQILDLLSQQLQVPRVNPNNYWIDPETAANLPESYARRFTALVLEETGSDFLVAMADPSDLIAIDEINRVLKKPPRIGVARESAINDLINLVYRRTEEISNIAEELASELNKGDDIDLATLNIGESAASAPVVRLLQSLFEDALQIGASDLHIEPDENALRIRMRRDGVLQEQIFRQRNIHSAMVSLLKIMSGLDITERRLPQDGRFHIRVHGRSVDVRLSTLPLQHGEGVVMRLLDLSGGLASLEKTGIPEDMLRRLRRLIHMPYGMILVTGPTGSGKSTTLYGALQELNKSGVKIITVEDPVEYRLSRINQVQVNEKIGLTFSRVLRTCLRQDPDILMVGEMRDEETAEIGMRAAITGHLVFSTLHTNDAVATANRLLDMGIEPYMLVSALRAILAQRLLRRICTQCREPYTPSELEQLWLEAAFGTSDYQLYVGKGCNACSNTGYSGRVGVFELLELTPDMINALRHNDQAGFAAACAADPNYQPMSNVALAYASKGLTTLEEVFRVLGEIDESELRLHQTKIDSLIAELDSQAAEQQLDHEAGDQPEVAQPDPAAEQGAADGSGPAVNSEERSDQSPPAEDRAPIDNRSLLDALNAPIDRKDRHG
>AP017372|688627:714350|695236_695458_-|BBE11008.1|DBSCAN-SWA
MNAADDCDVVTALGKDDLEDLFLEEDGSAPDYLSNFSIGNSSFNEASARFTVTWFDSTGDPETGTRTCYIGYN
>AP017372|688627:714350|710931_712158_-|BAU57370.2|DBSCAN-SWA
MKLSIQNPDRGMVLGRLIQDNSPQVREAAIKRVNDLDLLRAYLHGEADPRVRNAASVRYRQLLVGDCDATTLDRELGLCNDPTIIAYVAQKARDPEARRHAIRRIEQPALLAEIALHDDEERNRCLAAQLIEDDKTLSDLAQRAQSKGDEGYRATANCPQSEIETETDATATADDDVAATPQAAVAEARPKGYHQQPDSLKSSAPIAQPAENIHKPTSQAGASNMPEALCRAMHGLASVSYLPNLQSRRRNLTARWHALPQPPEAALQRRFRQANIRALTKTVSTNSEASRARRELEKLTKEFNPQRGEPTSQRIAAARRNLDGLRGEDIDSAHARIALQRLYRQLPRYEPEQAQRQPSRNALGEQKAILHRLNKHLIEAEKALANSDFVGLQGHIREALQIASSGAQ
>AP017372|688627:714350|690060_690690_-|BAU57350.1|DBSCAN-SWA
MLGLDMGLTHLAIDSSGTKEPNPRFLKKASANLRRKQKAVSRCKKGSKRRAKARLKLAKAHQRLANARADFQHKLSRQLIDENQAVIVETLKVKNMLKNKKLSKHIADASWSGVIEKLEYKAKAQGKHLIKIDQWLASSKTCSCCGHKLEELSLKVREWQCPACSVRHDRDIDAALNIKAQGILKLKAAGLSVSANGGKRKTSHALAAA
>AP017372|688627:714350|696993_698250_-|BAU57360.1|DBSCAN-SWA
MATEHALFTAALGLSAPWKVSDIRFDAQAKRIDFDITFTSGSRFACPACGAEAQAVHDTRQRSWQHLHFFEHQAYIHAAVPRVRCQDCGKTTQVEVPWARPGSGFSQLFEAMVITLCQQMSVQKVANYLGVGDDPIWRILNHYVEAARAQEDFSNVRAVGIDETASRRGHNYITVFQDLDDRRLLFACEGRNQSTIGAFVADLHDHGGDRDSVEAVCIDMSKAYIAGVQRYLPEAAITFDAFHVVQLANQAVDEVRRAEVRLEPALKRTRWVWLKDASRHTLKQLTELHYLSRTRLKTARAWRLKEALREILTGSGARREAEQNLNAWYSWARRCRLEPFKRLALTLKAHWQGILNAFDSRLSNGPVESMNGQIQVAKGRARGFRTTKNLISICYLIAGKLTHLPASPYGTICRSAVA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBE11006.1|688627_689884_-|transposase	ISL3 family transposase ISMac21	Q6V7R1	Burkholderia_virus	5.4e-17	24.4
688662:688721	attL	NA	NA	NA	NA
BAU57350.1|690060_690690_-	mobile element protein	A0A077SLN2	Escherichia_phage	8.2e-51	58.0
BAU57351.2|690739_691231_-|transposase	transposase	A0A077SLN2	Escherichia_phage	2.0e-52	66.2
BAU57353.1|691408_691717_+|transposase	transposase	A0A1S5RHE3	Helicobacter_phage	5.5e-16	47.1
BAU57354.1|691857_693564_+	hypothetical protein	NA	NA	NA	NA
BAU57355.1|693626_693860_+	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor	NA	NA	NA	NA
BAU57356.1|693856_694351_+	phosphohistidine phosphatase SixA	NA	NA	NA	NA
BBE11007.1|694646_694805_-	hypothetical protein	NA	NA	NA	NA
BBE11008.1|695236_695458_-	hypothetical protein	NA	NA	NA	NA
BAU57358.1|695870_696221_-	hypothetical protein	NA	NA	NA	NA
BAU57359.1|696283_697027_+|integrase	integrase	NA	NA	NA	NA
BAU57360.1|696993_698250_-	mobile element protein	Q6V7R1	Burkholderia_virus	5.4e-17	24.4
BBE11009.1|699133_699796_-	hypothetical protein	NA	NA	NA	NA
697028:698358	attR	NA	NA	NA	NA
BBE11010.1|700063_700357_+	hypothetical protein	NA	NA	NA	NA
BBE11011.1|700353_700542_-	hypothetical protein	NA	NA	NA	NA
BAU57362.1|701802_702306_-	MSHA pilin protein MshA	NA	NA	NA	NA
BAU57363.1|702457_703687_-	MSHA biogenesis protein MshG	NA	NA	NA	NA
BAU57364.1|703679_705656_-	MSHA biogenesis protein MshE	NA	NA	NA	NA
BAU57365.1|705660_706392_-	MSHA biogenesis protein MshN	NA	NA	NA	NA
BAU57366.2|706391_707894_-	MSHA biogenesis protein MshL	NA	NA	NA	NA
BAU57367.1|708055_708265_-	hypothetical protein	NA	NA	NA	NA
BAU57368.1|708491_709169_-	MSHA biogenesis protein MshJ	NA	NA	NA	NA
BAU57369.1|709173_710742_-	MSHA biogenesis protein MshI	NA	NA	NA	NA
BAU57370.2|710931_712158_-	hypothetical protein	NA	NA	NA	NA
BAU57371.1|712243_712651_-|protease	putative activity regulator of membrane protease YbbK	NA	NA	NA	NA
BAU57372.1|712685_714350_-|holin	high-affinity choline uptake protein BetT	A0A2I7QNT1	Vibrio_phage	4.6e-24	24.7

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>AP017372|1579081:1589746|DBSCAN-SWA
CATGGGACGCAAACGCCAAAAAGACAAGAGCCTGCCGCCACGTATGCACTGGAAGAATGGCGCTTGGTACCACGTCACATCAATGCAACCAAGGCGCTGGACACGGTTATCTGCAAACCGCGCCGAAGCAACACGCAAATGGGCAGAGATTGAGGCGCGTCAGCAGGCCGACGACGGCACTGTCGGTGATTTGCTAGCACGATATGAAAAATCTATCCTGCCAAGCAAAGCAGAAAAAACCCAGATAGAGTATAGACGACAGCTAAGCAAGCTCAAAGCAGTTTTCGGCAGCGCCAAACCTGATGATATAAAGCCCCATCATGTAGCGCAGTATCTTGATATGCACGCCTACCCTACTACGGCTAATCGCGAGGTGGCTTTACTGTCTGCCGTCTATGCTGAGGCCATGCGCTGGGGATTAGCAGACAACAATCCGTGCCGAGGCATTAGGCGCAACAAAGAAAAGCCGAGAGACAGATACATCGAAGATGCTGAGCTTGAAGCCCTGCGCAGGGTGGCTAATGAAAGAATCAAGGCAATCATTGATATCGCTTACCTGACTGCTCTACGCAAAGGCGATCTGCTTAACCTGCGCTTATCGGATCTGTACGACGATTGGATTCAATGCCGAGTCGGCAAGACAGGTCAGGAGGTCAGGATTGGTTGGAGTGACGCGTTGCGAGAAGCTGTTAGCCGTGCTCGTAAATTGCCGCGCCGCGCGTCTAGCATGTATCTGCTAGCTAATCGCAATGGACAGCCATACACTGTTTCAGGCTTCGACACGGAGTGGAAGAAGGTGGTAGCGAAATCAGGCATAGGGGATGTCCACTTTCACGATATTCGAGCCAAAGCGCTCACCGATATTGCTCGCGATCGTGGCAGAGATGCTGCTCAAGCTCTAGCGGCTCACCTTGTCGGGGAGACTACCGAGGCATATGTGCGAGCCAGGGAGAAGCATGTGGTAGCACCAACTCGGTAATTTTGTAGACAGGCGGCTTAATTTTGTAGACAACCACCGCCGAAGTTAGCGCTAAGTATCTGATTTAGTGGCGCGCCGGGGAGGATTCGAACCCCCAACCTTCTGATCCGTAGTCAGATGCTCTATCCAGTTGAGCTACCGGCGCTAAAGATTCTCATTATGCAATAAATGATTGACCGGGTCAAGCACTTGCTTGGCGGAGAGAGAGGGATTCGAACCCTCGGTGGGCGTAAACCCACACTCCCTTAGCAGGGGAGCGCCTTCAGCCACTCGGCCATCTCTCCACATCAGGCGCATACCTTAAGGGATTGACTTCATTTAGTAAACCCCTCAAGGCCAATTCTCTCTAAAACTGCCTAGCGGCTCTCGCCCTGGTGGCCATCGCCCGCAGATTGAGATCCGTCCGCCTCACCTTCATCGTCGCGCTCATGTCGGATCCGCTCGTAGATCTCCTCCCGATGTACCGAAACATCACGAGGCGCGTTAACACCGATCCGTACCTGGTTTCCTTTTACTCCGAGCACAGTCACACTGATCTCATCGCCAATCATCAGTGTCTCGCCCACTCGCCTTGTGAGTATTAGCATTGACTACAACTCCTCCTGCTTGAGATGCCAACAATCCCTGCGCGGCGCCATTCCAGCTTTGCCGCGCCTCTATCCCTGGCTTAACCCTGGGTTAACTCTCCTGTTCGGCCACAGGCTCCTTATTCAGCTCGAACGCCTTATGCAGCGCCCGCACCCCTAGCTCCAGGTACTTCTCCTCCACCACCACTGAGATCTTGATCTCCGAGGTAGATATCATCTGGATGTTTATACCCTCATCTGACAACGTCTGGAACATTGTGTTCGCAACACCGGCATGCGATCTCATGCCGACACCGACGACCGATATCTTAACAATGTTGTCGTCACCATAAACGTCCCGCGCCCCCAGCACCTCGGCATTCGAACGAACCAAATCTAGGGTATTCTGAAAATCGCGTTTATGCACCGTGAAGGTAAAATCGGTCAGCCCCTGTTGACTGATATTCTGGATTATCATATCCACTTCGATACTGGCATCGGCCACTGGGCCGAGGATTTTCGCTGCAATGCCGGGGGTGTCTGGTACTCCGATAACCGACACCTTCGCCTCTTCGCGATTAAATGCGATGCCCGAGATTAGCGGTTCTTCCATTCCTTCTTCCTCGTAAGTAATCAGTGTTCCAGGGCCTTCCTCGAAACTCGATAAGACGCGCAGGGGCACCCTATACTTGCCGGCAAATTCAACGGCGCGTATTTGGAGGACCTTGGAACCCAGGCTTGAGAGTTCCAGCATCTCGTCGACGGTTATCTTATCAAGCCTCCGGGCGTTAGGAACTACACGAGGATCTGAGGTATAGACACCGTCAACATCAGTGTATATTTGACACTCATCCGCCTCTAGGGCTGCTGCGAGAGCCACCGCGGTGGTATCTGAACCGCCACGGCCCAGGGTAGTTATGGCGCCATTCTCATCAACGCCCTGAAAACCAGCCACTACTACAACTCTGCCGGCACCTAAATCTTCACGGATCGATTCGGCGTCAATATCCTGGATGCGTGCCTTACTAAATGTACTATCGGTAAGTATGCTTACCTGAGCGCCGGTGTAGCAGCGGGCCGCGCAGCCTATCTGCTCAAGCGCCATAGTCAACAGCGCTATCGTCACCTGTTCGCCTGTAGAGAGGAGTACATCGACCTCACGCGGCGGTGGATTTGAATTCACTGACTCGGCTAACGACAACAGGCGGTTTGTCTCACCGCTCATAGCGGAGACAACCACAACCACATCATCTCCCGCATCACGGCTAGCCTTGAGCTTCTCAGCGACAGCCTGAATACGCTCCGTAGTGCCGACGGAAGTACCACCAAACTTTTTAACAATTAGCCCCATAAAGTCCCTCGGATTAAAGTGTCCCTCATTAACGCACGGGGCCCATTTAACAACATTGAGTTTAAGATGTTAAATAGTCTCAAACAAGTCAAGCATAAATTTATCTGACTTTTACCCCGCGCTTTCCTTTATCCATTGATCTACTGAGGCCAACGCGTTATTAACATTGCTCGGATCACGCCCCCCGGCCTGGGCAAAGTCAGGGCGGCCGCCGCCTTTGCCGCCAAGCTGCTGAGCAACAAAATTGACCAAATCACCCGCAGAGAATTTTGCGGTTAGATCCTTAGTCACCCCTGCGACAATCTGCACTTTCTCGCCCTGCACCGCAGCCAGCAGGATAACCCCACTACCCAGCTGATTTTTCAATTGATCTACGGTCTCACGCAGCCCTTTGCCGCCAGCCTCTACCTTACTGGCCAAGACCTTCACGCCTGCCACTTGATACGCCTCATCGACCAACGAACGCCCAGCTTGCGTGGCCAGCTTCTGCTTTAACCGCTCGAGCTCCTTTTCCAACTCGCGGGACCGATCGGCAAGCTGTTCTACTTTATGTTCGAGATTATCCGGACTTACCCGCAACACATCGCTAAGCCGCTGGATCTGCCCCTCGATCTGCTGCGCCCATTGGACAGCGCGCCCGCCGGTGACAGCCTCAATCCGCCGCACGCCGCCAGCTATGCCGGTTTCATGGACTATCTTAAATAAACCTATATCACCACTGCGCTGGACATGGGTTCCACCACACAGCTCACTCGAATAGTCACCGAGCGAGACCACCCGCACGGTATTGCCATACTTCTCGCCAAATAAGGCGACAGCTCCAGCCTCCAAGGCCTCGTCGAAACCCATTATCTCAGCCTGCGCGGGTAAGTTGGCTTGGACTTGAGAGTTGACCCGATACTCAATCTCCATAAGCTGATCGCGAGTGGGAGCCTCGTAGTGCGAGTAATCAAAGCGCAGGCGATCTGGGGCGACTAGTGATCCTTTCTGCTGTACATGGTCACCGAGCACCTCGCGCAAAACCGAGTGGAGCAGATGGGTAGCCGAGTGATTACGTACCGTCGCCTCGCGAGTGCCTTGATCAACCTGTGCACTGACCTGGTCGCCAACACTCAACTCCCCCCTCTCCAACCTACCGAGGTGGCCGTGGGCATCGCCCTGTTTGACCGTATCTTCCACCCGAAACCAAGCAGAGTTGGTATAGATCTCACCCCGATCACCAACCTGACCGCCAGATTCAGCGTAAAACGGTGTCTGATCGAGGACTAGCATGCCCTCTTCGCCAGCCTCGAGCTGCTGAACAGATGAACCCTCACGATAAATGCCGATGATTCGGCCGACATCGGCGAGATTACTATAGCCGGTAAAACGGCTCTCGCCGGCATCGATCACTTCTTCACGGGGACCACCAAAGCGGCTAGCCGCCCGGGCACGCTCACGCTGCTCAGCCATACGCCGCTCAAACCCATCATGATCGACCTCTAGACCGCGCTCACGGGCAATATCGGCAGTCAAATCGACCGGGAAGCCGTGTGTATCGTAGAGCTTAAAGACCACCTCACCATCGATAATGCCGCTATCGGTACGGGCCAGATAGTCGTCGAGCATATCCAGGCCGTCCTCGAGCGTCTCCCGAAAGCGTTTCTCCTCCTGATAGAGGATCTTCTCGACAAACTCACGACGCTGGCTGAGCTCACTGTGGGAGTCGCCCATTATCGACTCGAGGGGCTCTACTAGGCGATAGAAGAAGGGTTCATCGATGCCTAACTGGTAGCCGTGACGAATAGCACGCCGGATGATGCGCCGCAGGACGTAGCCCCGGCCTTCGGTAGATGGCAACACCCCATCTACTATCAGAAAAGAACAAGCCCGAATGTGATCGGCTACGACCTTTAGCGACGGATTCTTAGGGTCACTTATTCCGGCGATATTACCTGCCGCCTCGATAAGCGGAACGAATAGATCGGTTTCGTAGTTATCGTGCACGCCCTGAACTACCGCCGCGAGACGCTCCAGTCCCATACCGGTATCGATAGATGGACTCGGCAAGGGGTTTAGATTACCCTCGCTGTCCCGGTCATACTGCATGAAGACAAGGTTCCAGACCTCAATGTAGCGATCACCGTCTTGATCCTCGGAACCCGGTGGACCCCCGGGCACATCCGGGCCGTGGTCGTAAAAAATCTCCGAGCAGGGGCCACAGGGGCCCGTATCGCCCATCGACCAAAAGTTATCGTGGGCCCCTATGCGCCGAAAACGCTGCGGATCGATGCCGATTTCCTCGAGCCATATCTGCGCAGCCTCATCGTCCTCTTCATAGACGGTTACCCACAAACTCTCTGCCGGCAAACCAACAACCTCGGTCAGGAAGTCCCAGGCGTAGTGGATGGCATCGCGCTTAAAGTAATCGCCAAAGGAGAAATTACCCAGCATCTCGAAGAAGGTATGATGCCGGGCAGTATAGCCGACATTTTCCAGGTCGTTATGCTTGCCACCGGCTCGCACGCAGCGCTGACTGCTAGCTGCCCGGACGTAGCCACGATCTTCCCGACCCAAAAATACTTCCTTGAATGGCACCATGCCGGCGTTGGTGAACAACAGCGTCGGGTCGTTGGCAGGCACCAAAGCAGAACTATGCACTACCTCATGAGCGTGTTTACGGAAATACTCCAGGAACGCAGTGCGCAACTGCGCCGATGTCATCCTTTCACCCATACGGGACCTTTCCCCTAGTCGTTATAATACCCAAGTTCACCTATGGCGGCTCTGGTCTGCTCTGTAGTGAAGCCACGCCGCTGCAGAAACTGCGCCTGGCGCTGCATCTCCCGGCGCTGCTGCGGAGAATTATCTCCGAAGCGCTTCCTGCGAACCTGATCAGCTAACTCACGCCAATCTAGTTGGTGCTCATCAACATATTCTTCAATGGCCTGATCAATAATCTCTTCAGGCAACCCCCGCTGCAGCATCTCGCTACGCAGGCGCAGCGGCCCCTGGCCGCGCTCGACTCTGCTGCGCACAAAGGCCTCGGCAAAACGCTGCTCATCAAGCCAACCCTGCTCGAGCGCCTCAGCTACTATTTGCTCGCGCACCGCTGAGCTAAAGCCACGTCTGGTTAACTTATCGTCAAGCTCACGCCGGGTATGTTCTCGCCTAGCGAGCAGGCGCACGGCAACCTCGCGCGCCTGCTCGATCAGACCATCGCTGCCCATCTAATTAAGAGTCGGCAGAGTCATCCGCAACTGCCTCCCCTCCAGCCTTACCCTTTCCGCCGGCAGCTTGTGCTTCGCCAGATTTGCCCTTTTTGCCGCCCTGCGAGGGTGCGGTCGTAGCTCCCTTTTCAGTTGCACCGGCTTCTACGGCTTCTCCATCTTCGCCACTCTCAGAATCCAAACTACCGAGCACCTTATCGCGGATCTTGCGTTCTAATTCAGCAGCTATATCGGGGTTACTCCGCAGATACTGTCGGGCGTTATCCTTACCCTGGCCAATGCGCGTCGAGTTGTAGCTGTACCATGCGCCCGATTTTTCGATCAGCCCCTGCGCCACCCCCATGTCGATGATCTCGCCCTCGCGCGATATACCCTCGCCATAAAGGATCTCGAATTCAGCCTGCTTAAAGGGCGGCGCCATCTTGTTTTTGACCACCTTTACGCGCGTCTCGTTGCCGAGCACCTCATCGCCCTTTTTGATCGCCCCTAACCGGCGGATATCCATACGCACTGATGAGTAAAACTTAAGCGCATTGCCGCCAGTAGTGGTTTCGGGGCTACCGAACATGACCCCTATCTTCATGCGGATCTGGTTGATGAAGACAACCAGGGTGTTCGAGCGCTGAATGCTGCCGGTCAGCTTGCGCAACGCCTGTGACATAAGCCGGGCTTGCAGACCGACGTGCGAGTCGCCCATCTCGCCTTCTATCTCTGCCTTAGGGGTGAGCGCGGCAACCGAGTCGACGACCACCACATCCAGCCCGCCTGAGCGAACCAGCATATCGGCAATCTCCAGGGCTTGCTCGCCAGTATCCGGCTGGGAAACCAACAGGTCATTGATATCCACCCCGACAGCCTCGGCATAATCGGGGTCCAGGGCGTGTTCGGCATCAACAAACGCCGCCGCCCCTCCGGCTTTCTGTGCTTCGGCGATTATGTGCAGGGTCAGGGTGGTCTTGCCGGATGATTCCGGGCCGTAGATCTCCACCACCCTGCCGCGCGGCAAACCTCCTATGCCGAGCGCCACATCGAGGGCAAGAGATCCGCTGGAAATCGCCCTGACATCACCGCGCACCGCACGGGCATCACCCATGCGCATCACGGCACCCTTACCGAACTGTTTCTCTATCTGGCCCAGCGCTGCACCGAGCGCCTTTTTACGGTCGTCGTCCATTGCCGTTGTCACCCTTCTCGCGTCAATTCTACCTGATGAGTTTCAGGTTGCGGCGCTAAGGGACCCGCTGTGCATCCCTGCCCCCGGAGCCGCCCCTGCATTTATGTCTAACCCACTGTCATGGGCACAGGCCACTATAACTTAGCTGATCCATCTGAGCTAGCGGCTAATTGCCAAAAAGGGTCAGGCGCTGAGTAGAGCATCAATCGCAGCAGCCGCACTGCCTAACCGAATAGCCTGTCTATCCCCATTCAGTTGCAAGCGCTGTGCCATAACCCCGGCTGCACTTGCCCTCGCCACCCAGACTGTCCCTACCGGTTTGCCCATACTTCCTCCGGACGGACCAGCAACTCCGGTTATGGCAACTGTGTAATCAACCGGTGCCCGCTCCAATAAACCGGCTGCCAGGGCCTCGGCTACCGGCTGGCTGACTGCCCCGTAATCCTCCAGCAGCTCCTCGGGTACTCCTAGTAGTTGCTGTTTAGCTGCATTGCTATAGACGATCAAACCACGTTCGAACCAGCTTGACGCTCCGGGTATATCCGTTAGCACCTTGGATAGCAGACCGCCAGTGCATGATTCAGCTACCGCCATGCAAGCGCCACGGGATTCGAGTAGCTTACCCAGCTGCATAGCCCGCTCTTGCAAAGTGGCCTCATCGTGTACCATATCGCCCTACTCCCCAACCACTAGCTATACGGGAAACACTACCTGACAGCCAACAACCCGGGAAGCAATACACACATAAGTATGGCCGCACAACCTAACACCAGTGACCCTGCCGCAAACAGCTCCGCGCACACGCCCATGATGCGCCAATATTGGCGCATTAAGGGCGATTACCCTAATACCCTGCTCTTCTATCGCATGGGGGATTTCTACGAGCTGTTTTACGACGATGCCCAACGGGCCGCCAAGTTGCTCGATATTACCCTAACCAAGCGCGGTGAATCAGCCGGGGCGCCGATCCCCATGGCGGGAGTCCCTATCCACTCTGCAGAGAGTTACCTAGCTCGTCTCGTCCGCCTTGGCGAGTCGGTTGCCATATGTGAGCAGGTAGGCGATCCGAACACCGCGAAAGGTCCTGTTGACAGACAGGTTGTGCGGGTCGTAACCCCGGGCACCCTCACCGAGGAGGCGCTGCTTGAAGAGCGCAGCGATAACTTGCTTGCAGCCATAGCTCCAGGCCCTCGCCCGACTCGGGACGGTAATGAGTGCAGCTACGGCATTGCCACCCTAGAGCTTTCCTCGGGACGCTTCACGGTACTTGAGGTGCCCTCTGGAGAAGAACTGGAGGCCGAGTTAGAGCGCCTCAAGCCAGCCGAATTGATCTACCCTGACGACGACCAGACGCCTATTCCGCAGGTGGATTGCGTCGTTCAACGCCGCGCGCCCTGGCACTTTGAGCTTGAACCGGCACGGCGCTTGCTGCTGCGCCAATTCGCCACTCACGACTTGTCAGGGTTTGGTGCTGAGGGTCTCCAAGCGCCTATTGCAGCAGCTGGGGCGCTCCTGCAGTACGTCAATGAGACCCAGCAGGCAAGCCTACCCCATGTCAGCGGTCTGAGCGTGGAGTCGCGCAGCGATGCGATAACCATTGATGCGGCTAGTCGACGTAACCTGGAGATTGAGCGCAACCTCTCCGGCGGCACCGAACACACCCTGGCCGCGGTGATTGATAGCAGCATCACGGCAATGGGCGGACGGCTGCTGCGCCGCTGGCTACAGCGCCCACTTCGCCAGCGTGAGGTAGTTGCTGAGCGCCACGCAGCGGTAGAGGCGCTGCTCAACGGCGGCTATACTCGACTACGCCAACTCCTCGACGGTTGCGCCGATGTTGAGCGTATCCTCGCCCGCATCGCGCTAGCCAGCGCCCGTCCGCGCGATCTTACCGGCCTGCGCGACGCCCTCCAGCGCTTGCCAGAGCTGCAGAACCTGCTCAGCGAGCTACATGCCGAGCGCCTGCAGCAACTCGCCGAACAGGCCAGTGAGCACCCCCAAACCCTTGAACTGCTGCGCAGCGCAGTGATCGACTCGCCCCCTGCAACGATTAGGGATGGCGGGGTAATAGCCGACGGCTATGACAGTGAACTCGATGAGCTGCGTGATCTCTCCCGTAACGCCGACACCTTTCTAGCCGATCTTGAGCTACGCGAGCGCGAACAGAGCGGCATCGCCACGCTCAAGGTCGGTTTCAACCGGGTCCACGGTTACTATATCGAGGTCAGTCGTGGTCAGAGCGACAAGGTGCCCGAGCACTTCTCCCGCCGCCAAACCCTCAAGGGCGCGGAAAGATATATCACCCCTGAGCTAAAGCGCTTTGAGGAAAAGGTTTTATCCGCTCGTGAGCGCGCCCTAGCCCGCGAAAAGGCCCTCTATGAGGCGCTGATAAGCAAGATCGGCGAAGATTTAGCGCAACTGCAAGAGTGCGCTGCGGCGCTTGCCGAACTCGACGCCCTAGGCACATTTGCCGAGCGAGCTCAGGCGCTCGCCTACGTCCGCCCAGAACTTAGCAATACCCCAGGCTTGCTGATCGAGGCGGGGCGTCACCCGGTAGTTGAACACACCCTTAACGGTCCATTTGTGCCCAATGATCTGTGCTTCGACAATCAGCGCCGCATGCTCTTGATTACCGGGCCAAACATGGGCGGTAAGTCGACATACATGCGCCAAACCGCGCTCATTGCCTTGCTCGCTTACGCCGGGTCTTTTGTCCCCGCCAAGCGGGCTGTACTCGGCCCGATAGACCGTATCTTTACCCGCATCGGCGCCGCAGATGACCTCGCCTCAGGACGCTCAACATTCATGGTCGAGATGACCGAAACCGCCAATATCCTGCACAACGCCACCGCCGAAAGCCTAGTGCTGATGGACGAAATCGGTCGGGGAACGAGTACCTTTGATGGGCTCGCCCTGGCTTGGGCGTGCGCTGAACGCCTAGCTAAAGAGATACGCGCCTTTACTCTCTTTGCGACCCACTATTTCGAGATGACTACGCTCGAGCAGACCCATCCCGGGGTAGTCAACGTCCACCTTGATGCCACCGAACACGGTGATAGCATCGTCTTTCTCCACTCGGTGCGCGAAGGGCCGGCCAACCAAAGTTACGGCCTGCAGGTTGCAGCACTCGCCGGTGTTCCTCAGGGGGTTCTGAAGGCCGCACGCGAGAAGCTGCAGGGACTGGAACAGAATGCTGCAATAACTCCCCAGGGCGATAGCCTGCAGTTATCGCTGTTTGACCCCTTCACGCCTGCCGCCCCCCCGCCGCAGACGGAGCCTAAGCCTGACCCTGTTAGGCAGAAGATCGAGCAAATAGATCCGGATGAGTTGACCCCTCGTCAGGCCCTAGAGAAGCTTTATGAATTGAAACAGGAGTGCAAAGATTAG

Protein sequences of DBSCAN-SWA_2

>AP017372|1579081:1589746|1579081_1580059_+|BAU58147.1|integrase|DBSCAN-SWA
MGRKRQKDKSLPPRMHWKNGAWYHVTSMQPRRWTRLSANRAEATRKWAEIEARQQADDGTVGDLLARYEKSILPSKAEKTQIEYRRQLSKLKAVFGSAKPDDIKPHHVAQYLDMHAYPTTANREVALLSAVYAEAMRWGLADNNPCRGIRRNKEKPRDRYIEDAELEALRRVANERIKAIIDIAYLTALRKGDLLNLRLSDLYDDWIQCRVGKTGQEVRIGWSDALREAVSRARKLPRRASSMYLLANRNGQPYTVSGFDTEWKKVVAKSGIGDVHFHDIRAKALTDIARDRGRDAAQALAAHLVGETTEAYVRAREKHVVAPTR
>AP017372|1579081:1589746|1582087_1584691_-|BAU58150.1|tRNA|DBSCAN-SWA
MGERMTSAQLRTAFLEYFRKHAHEVVHSSALVPANDPTLLFTNAGMVPFKEVFLGREDRGYVRAASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWDFLTEVVGLPAESLWVTVYEEDDEAAQIWLEEIGIDPQRFRRIGAHDNFWSMGDTGPCGPCSEIFYDHGPDVPGGPPGSEDQDGDRYIEVWNLVFMQYDRDSEGNLNPLPSPSIDTGMGLERLAAVVQGVHDNYETDLFVPLIEAAGNIAGISDPKNPSLKVVADHIRACSFLIVDGVLPSTEGRGYVLRRIIRRAIRHGYQLGIDEPFFYRLVEPLESIMGDSHSELSQRREFVEKILYQEEKRFRETLEDGLDMLDDYLARTDSGIIDGEVVFKLYDTHGFPVDLTADIARERGLEVDHDGFERRMAEQRERARAASRFGGPREEVIDAGESRFTGYSNLADVGRIIGIYREGSSVQQLEAGEEGMLVLDQTPFYAESGGQVGDRGEIYTNSAWFRVEDTVKQGDAHGHLGRLERGELSVGDQVSAQVDQGTREATVRNHSATHLLHSVLREVLGDHVQQKGSLVAPDRLRFDYSHYEAPTRDQLMEIEYRVNSQVQANLPAQAEIMGFDEALEAGAVALFGEKYGNTVRVVSLGDYSSELCGGTHVQRSGDIGLFKIVHETGIAGGVRRIEAVTGGRAVQWAQQIEGQIQRLSDVLRVSPDNLEHKVEQLADRSRELEKELERLKQKLATQAGRSLVDEAYQVAGVKVLASKVEAGGKGLRETVDQLKNQLGSGVILLAAVQGEKVQIVAGVTKDLTAKFSAGDLVNFVAQQLGGKGGGRPDFAQAGGRDPSNVNNALASVDQWIKESAG
>AP017372|1579081:1589746|1580415_1580646_-|BAU58148.1|DBSCAN-SWA
MLILTRRVGETLMIGDEISVTVLGVKGNQVRIGVNAPRDVSVHREEIYERIRHERDDEGEADGSQSAGDGHQGESR
>AP017372|1579081:1589746|1580737_1581976_-|BAU58149.1|DBSCAN-SWA
MGLIVKKFGGTSVGTTERIQAVAEKLKASRDAGDDVVVVVSAMSGETNRLLSLAESVNSNPPPREVDVLLSTGEQVTIALLTMALEQIGCAARCYTGAQVSILTDSTFSKARIQDIDAESIREDLGAGRVVVVAGFQGVDENGAITTLGRGGSDTTAVALAAALEADECQIYTDVDGVYTSDPRVVPNARRLDKITVDEMLELSSLGSKVLQIRAVEFAGKYRVPLRVLSSFEEGPGTLITYEEEGMEEPLISGIAFNREEAKVSVIGVPDTPGIAAKILGPVADASIEVDMIIQNISQQGLTDFTFTVHKRDFQNTLDLVRSNAEVLGARDVYGDDNIVKISVVGVGMRSHAGVANTMFQTLSDEGINIQMISTSEIKISVVVEEKYLELGVRALHKAFELNKEPVAEQES
>AP017372|1579081:1589746|1584705_1585185_-|BAU58151.1|DBSCAN-SWA
MGSDGLIEQAREVAVRLLARREHTRRELDDKLTRRGFSSAVREQIVAEALEQGWLDEQRFAEAFVRSRVERGQGPLRLRSEMLQRGLPEEIIDQAIEEYVDEHQLDWRELADQVRRKRFGDNSPQQRREMQRQAQFLQRRGFTTEQTRAAIGELGYYND
>AP017372|1579081:1589746|1585189_1586359_-|BAU58152.1|DBSCAN-SWA
MDDDRKKALGAALGQIEKQFGKGAVMRMGDARAVRGDVRAISSGSLALDVALGIGGLPRGRVVEIYGPESSGKTTLTLHIIAEAQKAGGAAAFVDAEHALDPDYAEAVGVDINDLLVSQPDTGEQALEIADMLVRSGGLDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGSIQRSNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRMDIRRLGAIKKGDEVLGNETRVKVVKNKMAPPFKQAEFEILYGEGISREGEIIDMGVAQGLIEKSGAWYSYNSTRIGQGKDNARQYLRSNPDIAAELERKIRDKVLGSLDSESGEDGEAVEAGATEKGATTAPSQGGKKGKSGEAQAAGGKGKAGGEAVADDSADS
>AP017372|1579081:1589746|1587109_1589746_+|BAU58154.1|DBSCAN-SWA
MAAQPNTSDPAANSSAHTPMMRQYWRIKGDYPNTLLFYRMGDFYELFYDDAQRAAKLLDITLTKRGESAGAPIPMAGVPIHSAESYLARLVRLGESVAICEQVGDPNTAKGPVDRQVVRVVTPGTLTEEALLEERSDNLLAAIAPGPRPTRDGNECSYGIATLELSSGRFTVLEVPSGEELEAELERLKPAELIYPDDDQTPIPQVDCVVQRRAPWHFELEPARRLLLRQFATHDLSGFGAEGLQAPIAAAGALLQYVNETQQASLPHVSGLSVESRSDAITIDAASRRNLEIERNLSGGTEHTLAAVIDSSITAMGGRLLRRWLQRPLRQREVVAERHAAVEALLNGGYTRLRQLLDGCADVERILARIALASARPRDLTGLRDALQRLPELQNLLSELHAERLQQLAEQASEHPQTLELLRSAVIDSPPATIRDGGVIADGYDSELDELRDLSRNADTFLADLELREREQSGIATLKVGFNRVHGYYIEVSRGQSDKVPEHFSRRQTLKGAERYITPELKRFEEKVLSARERALAREKALYEALISKIGEDLAQLQECAAALAELDALGTFAERAQALAYVRPELSNTPGLLIEAGRHPVVEHTLNGPFVPNDLCFDNQRRMLLITGPNMGGKSTYMRQTALIALLAYAGSFVPAKRAVLGPIDRIFTRIGAADDLASGRSTFMVEMTETANILHNATAESLVLMDEIGRGTSTFDGLALAWACAERLAKEIRAFTLFATHYFEMTTLEQTHPGVVNVHLDATEHGDSIVFLHSVREGPANQSYGLQVAALAGVPQGVLKAAREKLQGLEQNAAITPQGDSLQLSLFDPFTPAAPPPQTEPKPDPVRQKIEQIDPDELTPRQALEKLYELKQECKD
>AP017372|1579081:1589746|1586542_1587028_-|BAU58153.1|DBSCAN-SWA
MVHDEATLQERAMQLGKLLESRGACMAVAESCTGGLLSKVLTDIPGASSWFERGLIVYSNAAKQQLLGVPEELLEDYGAVSQPVAEALAAGLLERAPVDYTVAITGVAGPSGGSMGKPVGTVWVARASAAGVMAQRLQLNGDRQAIRLGSAAAAIDALLSA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1574902:1574914	attL	NA	NA	NA	NA
BAU58147.1|1579081_1580059_+|integrase	putative integrase	E5E3N4	Burkholderia_phage	1.7e-23	36.7
BAU58148.1|1580415_1580646_-	carbon storage regulator	A0A2I7RT00	Vibrio_phage	6.1e-12	60.8
BAU58149.1|1580737_1581976_-	aspartokinase	NA	NA	NA	NA
BAU58150.1|1582087_1584691_-|tRNA	alanyl-tRNA synthetase	A0A1V0SK38	Klosneuvirus	2.8e-76	37.3
BAU58151.1|1584705_1585185_-	regulatory protein RecX	NA	NA	NA	NA
1585029:1585041	attR	NA	NA	NA	NA
BAU58152.1|1585189_1586359_-	RecA protein	A0A2D1GPX2	Mycobacterium_phage	9.4e-117	63.7
BAU58153.1|1586542_1587028_-	molybdopterin binding motif	B5TK85	Pseudomonas_phage	2.4e-26	43.4
BAU58154.1|1587109_1589746_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.8e-30	22.8

Sequences of DBSCAN-SWA_3

Nucleotide sequences of DBSCAN-SWA_3

>AP017372|1627203:1637991|DBSCAN-SWA
GCTATCCAGCCGGGAGTAGCTGCTTCTCGGCGAGCCACTGCGAATTAAATAGCCGTGAAGAGTAGCGCGCCCCGCCATCACAGAGCACCGTCACAATTGTATGCCCTGGCCCAAGCTCTTTGGCTAATCGCAGCGCTGCACTAACGTTAACCCCGCTCGAACTGCCTACGAACAAACCCTCTTGGTACAGTAGCCGATAGACCATCGGCACAGACTCTGTATCCGGGATACTGTATGCAGTATCTATCGGGGTGTCCTGGAGATTGGCGGTTACCCTACTACTGCCTATCCCCTCGGTGATCGAACTGCCGGAGCTGGAACTCGGAGTGCCGTGATAGACGTAGTTATATAGGGAACTACCGGCCGGGTCAGCGAGTACAATGCGCACCTTGTCCGAGCGCTCTTTGAGGGCACGCGCAACCCCGCCCAGCGTTCCTCCGGTACCGGTAGCAGCGACAAAGGCATCTATCTGACCGGCGCATTGCTCCCATATCTCGGGCCCGGTTGTAGAGTAATGGGCATCACGGTTGGCGGTATTATCGAACTGATTTGCCCATATCGCCCCCTCCATCTCTGCAGCCATCCGCCCGGCTATCTTCTGATAGTTGTTGGGGTCACTATAAGGAGCGGGAGGCACCAGGTGGACCTCAGCGCCAAGGGTCTTCAGCAGGTCGATCTTCTCTTGGGTTTGAGTCTCGGGGATTACAATGATACAGCGGTAACCGCGGGCGTTGCAGATATGCGCCAAACCAATGCCGGTATTGCCGGCGGTGCCCTCCACTACTATCCCACCGGGGCGCAGCTGACCAGCCCTTTCGGCGTTATTTATTATCCCCCAAGCGGCCCTATCCTTAACCGAGCCGCCGGGGTTTAGCCACTCTGCCTTTGCGAGTATTTCGCACCCTGTCTCGGCACTTAATGCAGACAACCGAATCAGCGGGGTCCTACCTATCGCCCCAACAAAGCCATCGCAGATGTCCATACCAAACCCCTTATCTGATGCCAGTATTGATATATATCATACTGGCATCAGACTAGGTTACGCTACTAATAGATGGCAAAGCCGATATTAATTCACGGCCTCTCCGATGGGGGTACCTCAAGGTCGGGCTGATCGGACCCTTCTTTCTCTGGCGGGATCAGATCCTGCTTACTCACACCGAGAGCCAGGGAGGTAGCACTGGCAATGAAGATCGACGAGTAAGAACCGACTAGCACCCCTACCAGCAAGGCAACAGCGAACCCGCGAATGATCTCACCGCCTAAAAAGATGAGGGCACATACCACTAGCAAGGTGGTAAACGAGGTCACCAAGGTGCGCGAGAGGGTCTGGTTTATCGCCATATTCATGACGAACTCTGTCGTCCCCTTGCGAACCTTGAGGAAGTTCTCGCGGATACGATCAGAGACAACAATAGTGTCATTGAGCGAATAGCCGATAGTTGCCAGCAGTGCCGCTAGCACCGTCAAGTCGAAGGTCATCCGGGTCAGCGAGAAGAAGCCTATGATGATCACTATATCGTGCAGCAGGGCTGCTACGGCACCTACCGCAAAGCGGTACTCGAAGCGAAAGGCGACGTAGATCAAGACACCAAGCAGGGCCAAACCTAGGGCCATCAAACCCTGCTCAGTTAGCTCCTCGCCGATCTGCGGACCGACAAACTCCACTCGGCGCAAATCGACACCATCATGAGCAGCGCTGAGCTTATCGAAGATCTGCTCGGATATTTGCGCCTGCTCAACGCCATCCATAGGCGGAACACGGATCATGATCTCGCGCGGTGAGCCGAAGTGCATTACCTGAGCATCTTCGAACTCAGTCTCGGCGAGTATCGCCTCCACTTCGGATACCTCAATCGACTCCTCGTAACCTACTTCGACTAGAGTCCCGCCGGTAAAGTCTATTCCCAGGTTCAACCCCTGCCAAAGTAAGGAGCCGATAGAGATCACCAACAGCAGCGCCGAAAGGCCAAAGCCGATGCGCCGATGGCCGAGGAAATTGAAATTTGGATCCTGTTTAAAGATCTCCATAGTTAGATCTTAAGCTCCGTGACCTTGCGCCCACCATAGATCAGATTGATCACAGCGCGCGTGCCAACAATGGCTGTAAACATGGAGGTTGCCAAACCGATAGCGAGGGTGACCGCAAAGCCCTGCACTGGACCTGTTCCAAATATAAACAGCATTGCAGCGGCTATGAGCGTAGTCACGTTGGCATCGGCGATGGTTGAAAGTGCTTTTGAATAGCCACGGTCAATGGCTGTCTGAATTGGCGTTCCGGCCTTCAACTCTTCGCGGATGCGCTGGAATATGAGCACGTTAGCGTCTACAGCCATACCGACGGTCAGGACGATACCAGCAATGCCCGGCAATGTCAGTGTAGCCTGCAACATAGATAGTACGGCTACTATGATTATCAGGTTGGTGAACAGCGCAAGATTGGCAACTAATCCAAACACCCGGTAATAGACGGCCATGAAGGCGACGACCAGGAAGAACCCGATGACAACGGCCATAAAGCCGCGCTCGACATTCTCGGCACCCAAGCTCGGGCCGATAGTCCGCTCTTCAACAATATCTATAGGGGCAGCCAAGGCACCAGCCCGCAGCAGCAATGCCAGATTACTCGCCTCTTCGCTTGAGTCTATCCCGGTGATGCGGAATCGCCCACCCAAGGCTTCGCGGATCCGAGCAACGCTGATCACCTCTTCTATCTCGCGGCTAACCCGCTGCGGCTCACCATCGACCAGTTCCGTCTCGGTAACCCGCTCAATGAACAGAACCCCCATATGATCGCCGACACGCTCACGGGTAGCCCGGTTCATGATCCTGCCGCCAGTACCGGAGAGGCGGATGTTTACCTCGGGTGAACCGGTCTGCTGATCATAACCTGATGAGGCATCGATGATCCGCTCTCCGGTAACAATGTAATCACGCTCGAGCAGGACATAATCACCAGCATGTTCAACATTGCGCGTGGGGAAGAGTTCCGAGCCCGCTGGTACGGCATCAGGGTCATCCGGGTCGCCAGTAAACGGGAAGTCGCTGTGATCTACGAAGCGGAACTCAAGGGTGGCAGTAGCACCAAGTATCTCTTTCGCCTGCGCTGGGTCTTGCACCCCAGGCAACTGTACCACTATCCGATCAGATCCCTGGCGCTGTACAATCGGTTCAGCCACACCCAGCTCATCAACCCGGTTGCGCAGCGTAGTGACGTTCTGCTGCACAGCGAGGTTGATCATCTCCTGCTGATCATCTTCGTCAAGCTTGACGATGAGCAGATAATCGCCATTGCTCGGCTGCTTATCTATCTCTATTCCTTCAACCTGCTCGCTGATTAACCCTTCGGCGCGGGCGCGCAAATCCTCGCTGGTGAAGATCAGCCGCAGATCCTGCTCATCACTCACCTCAATGCTGGAATAGCGGATTCGCTCTTCGCGCATGAGGGTGCGGATATCCCTCTCGTAACCCTCAAGGGTGTCGTTGATCATCGCATCGAGATCGACCTGGAGCAGGAAATGGACCCCGCCACGCAGATCCAGCCCCAAGAACATCGGCTCAGCCCCTATGGCACGCAAGAACTGCGGCGTGGCCGGAACCAAGGTCATGGCTACCGAATAGTCGCGGCCGAGTTTGGCAGAGATCATGTCAGAGGCGCGCATCTGCCGATCCGTAGAGTCGTAGCGCAACACCCAGCGCTCTTCTAGGACCTCATGCACCGCCGGGCTCAAGCCTTCCTCTTCAAGGAAAGAGAGAACCTCGGACTGGGTCTCCTCGGCAGGGATCTCACCATCCTCGGTAGTTATTACCACCGAAGGGTCTTCACCAAAGAGGTTCGGCAGGGCGAATATTACCCCTACCGTCAGGACGGTGAGAACTAATATGTATTTCCAGAGTGGATAGCGGTTCAAGAGCTACTTGCCCTTCTTGTTTTCCAGTTCCTTGATCGTGCCCTTAGGCATCACGTTGGCCACCGCATGCTTCTGGATCTGCACCTGCAGACCGTTAGCTACCTCTACTGTGGCAAAGTTCTCGCCGACCTGAGTAATGCGCCCGAGCAAACCACCGTTGGTAACCACCTCATCACCCTTGGTCAAATCCTCGACCATTTGGCGGTGCTCTTTAGCCCGCTTACTCTGCGGACGTATCAGCAGGAAATAAAACAGCGCGATCATGCCCACCAGTAGCATGATGCTAAACCATATATCACCCTGCTGAGCCTCATTCTGCGCCCAGGCACTGGAAATCAAGAAATCCATATAGCTAGCTCCGTTATATTACAAAATTCTCTTATAGCTTACCTAAACAGCGCCCTATGATTGCTGTTCGGTCTCTGTCTCCCGCGAGTCATCGCCGCTGCGCGCCTTATCCAGCGTTCCTTGAGGTAACACCTCACCAACCATCTCGCGCTTAATGCTCCACTCTACCCCCTGCGCAACCTCCAAGCGAACGAAATCATCACTAACTCGGGTGATGCGACCAAGCTCGCCCCCCGCGGTGACAACCTCATCGCCCACTTGTAAGCCCTCAACCATTTCCTGATGTTCCTTCATCCTTTTGCGCTGCGGACGAATTAGCAGAAAATAGAAAATAGCAATCAGGAGCGCCGTGAAGACCAGGAAAAAGACCAGGTCACCCGTGCCCGGCTCCTGTTGCGCATATGCCGGTGCAATGAAAAAATCCAGCAACATCAACCCACTCCCTTATTCAATAGCCTCATGATCGAGTCACCTCTGGGCTCCCGCCGAACAGCTCAGAGGTGCATTATGTCATACGCGCGGGGGCTTTTGCTCGCGTGCAGTATAGAAATCATCAACGAAGGATGCCAGCCTACCCTCACTAATCGCTGCACGCAGCCCGGCCATTAGAGTCTGGTAATAGCGCAGATTATGCAATGTTGCCAACCTTGAACCGAGCATCTCGTTGCAGCGTTGCAGATGACTTAGATACGCCCGTGAAAAATGCCTGCAAGTATAACAATCACATGCCGGATCGACAGCCCGCGTATCCTGCCTATAGCGGCTGTTGCGCAAGCGCAATAGCCCTTGTGAGGTAAACAGAAAGCCGTTGCGCGCATTGCGCGTCGGCATCACACAGTCGAACATATCTATACCGCGGCGCACACACTCTACCAAATCTTCCGGCTTGCCAACCCCCATCAAGTAACGCGGCTGCTTAGCAGGTAACTGTGGTTCGAGGTGCTCGAGCACGGCATCGCGCTCAGCGCTTGGCTCACCGACTGAGAGGCCGCCGATGGCATAGCCATCAAAGCCTATATCCAGCAAACCTGCCAACGAAGCGCTACGCAACTGCGGATATACCCCACCCTGCACAATACCAAAAAGTGCTGCTGCGCTCTCACCATGGGCATCACGACTGCGCTGCGCCCAGCGCAAAGACAGCTCCATGGAACGCTTCACCTCATCCCACTGCGCCGGATAGGCCGGACATTCATCAAATATCATGACAATGTCTGAACCGAGCTCCCGCTGCACAGCCAGCGACTCTTCAGGGCCCATAAAGACCTTAGCCCCATCAACCGGCGAGCGAAACTCGACACCGGCCTCACTAACCCGGCGCAACTTGCCCAGACTGTAGACCTGAAAACCTCCCGAGTCGGTCAATATCGGCCCCGACCAGCCCATAAAGCTGTGCAAGCCGCCATGCTGGCGAATGATCTCGGTGCCTGGTCGCAGCCAAAGATGGAATGTATTGGCTAAAATGACCTCGGCACCCAGCCCGCTAACCTCCTCGGGCGTCAAGCCTTTGACCGTCCCGTAGGTGCCAACCGGCATGAACGCAGGTGTCTCGATCGTCCCGCTCGGGAGTCTCACCCTGCCCAGTCGTGCTGCGCCATCATTCGCGAGGAGTTCAAAAATGGCCCTGCGGCCAACGCCATTAACACTCAAACCGGTATATAGCTCCCTGCCTCGCTAAATCCACTCGACTACACCGGTAGCCAAATCGTACTTTGCCCCGATGACTTGCAACCGCCCTTGTTGAATAGCTCGCTCAAGTAGCTCAGACTTAGCACTCAACCGCTCGGCTGTGGAGCGTACATTGGCTATTGTCGCCTCCTCAATGATCTCGGCATCTGCCGTTGAGGTGTCGCCAAGCAGAGGCCGAACCGAGGGCTGCAACTCATCGATGATCTCCTGCAAGGCATCTGAAGGCGCCCTGCTTTGGCTACGCAAGGAATCAACCGTTGCCCCTATTGCGCCACAGCAAGAATGCCCCAAGACTACAATCAGCGGCACAGATAAGACCTCTGCAGCGTATTCAAGGCTGCCGATCTGGCCCCTGCCAGCGTAATTGCCAGCCACCCTGACTACGAACAGATCGCCTACTCCCTGGTCGAACACCTCTTCGGCCGGCACCCTTGAGTCTGCGCAGCCGAGGATTGCGGCAAAAGGCTGTTGCTTGGCAGCTACCTCCAAGCGCCGCTGATGGGTCATACGCTCATGCAAGCAAAGCTCGCCGTGCACAAACCGCTGATTGCCTTCTTTAAGTCTTGCCAAGGCAGCAGATGGAGTTAACATGTAGAATATTCCTCATGCATCAACGGGGGGAGGAGGACGATGTTACCACTTTTTGGCTTATCAGCATTACTAGCTGATGTGGGCTTGGTGAAATTAGCAAAGCCAATTTTTGATGCTCCCTCTGGCCGTTAAACCTAAAACCGTTCAGAATATGCGCTTATAAGTCAGCCGAGGAGTATCACGTTTGCCAAGCCGGGCACAGCTGAGCATAGTCGAGAGAGTTCTGGCTACTGACGTAACAGCGGTCATCGTCCTAGATGAAGATGGCGCGCTGGTATACGCCAACAATATGGCCTACCGGATGCTGGGCATCTATCTGCCCGATGGCTCCACTACTGAAGACCGTGCAGACACAGCTGACGATAATGACACCGCTGAACTCACGCAGCAGTTGCCCGACGAAATAGGCTCCTTTCGCTGGATTGCCAGCACCGGCACCCCGTTGCGTGATGTTAGGTTAACCCTCAAGCAATCCTCCGCGGGCCAGCGGGTATTCTCTATAAATGCGTCTCCCTTGCCAAGAAATGCTCATGAGACGCCGTGTGTCGCCTTATCTATACACGACTTTACCGAGCAGTATAAGTACTACGAAGAGGCCCTGCACAAGAGCCAGGAACGTCTGCAGCTGGCTACCGAAGCGGCCGGTATCGGGATCTGGGAGCGCGACCTTACCAACGATACGTTCCATTGGGATGAGCGCATACCCACCATCTACGGTATAAAATATGCCGATCTGCCAAGCAATTATGAGCAATGGCGCAAGATAGTGCTCGCAGAAGACTTGCCCGCACTAGAGCGCTCCTTCCGCCAAGCGAGGATCAACCACACGCGCTTCGAGACCGATTTCCGCATCCACGCCGGGAGCGGCGAAATACGCCACATCAGGGGCTTCGGCCAGTACATATATGACAACTCTGGAAACGCAATAAAACTTGTCGGAGTGAACGAAGACATTACCGAGCGCAAGCAAGTTGAGCATGAGCTTGCCCAGAGCAAGGAGAGATTGGAGGAGGCACAGCGAATAGCCCGCCTAGGCCACTGGATCGCCTCAACCGATAAAGGCCTGCTCGAGGTGGACCTGTGGTGGTCCCCGGTTATATACGAGATCTTTGGTCGTAACCCGGAAAGCTTTAAACCCGATTTTAAATCCTACCTCAGGGCCGTACATCCAGAAGACCGGGGAGAGGTAATAGAGCTACTGCGCCGCCTGCGCGCTGATCACGATCACAGGAGTGAGCATCGGATAATTCGCACCGACGGCGTCACCAAGTGGGTGCGTGCAATCGCTCGGACTGAAGATCAGTCTCCGGTTAACGCTCGCCGAATACTCGGCACAATCCAGGACATAACCGAGCAAAGAGAACTCCAACAAGAGTTGGAGTACCGCGCCTCCCATGATCCTCTTACAGACTTATTCAATCGTGCTAAACTCCAGCAGCAACTGCGGGCCGCGCAAGCAGCCTACGAACGGCATGGAACACCTTTCGCGCTAGTGATCGCCGACGTTGATCACTTTAAAGCAGTAAATGATCGTTGGGGACATTCGGTAGGAGATGCTGTGCTCTGGGAAATAGGCCGCCGCATGTCGAGCCAATTACGTGAAACCGATTTTCTCGGCCGCTGGGGAGGCGAAGAATTTCTTATTCTAGCCAACCACACCGATGAGTCTGGTGCAGCGCAGCTTGCCGATCGCATTCGTGAGTCTATATGCGGCTCTGAAATTCAGGGCATAGGCACCATAACCACCAGCTTTGGAGTGGCAGCTACAGAGCCAGGCACCTACCTAGAGGTGCTGGAAAACCGTGCCGATAAGGCTCTCTACGCCGCCAAGGAGCGAGGCCGCAACACCGTAATGAAGTATTCGCAGCTCTGACACGAAATTTCATCGCAACAAAAGGCGCACACCCGCCATGATAAACAGCCCTTCCCCCGAGGACTGTGAACGCATAGCCAGCCGCATGGATGGTTTTTTGTATCGCTGTAGATACGATGAAGAGCTAACCATGCTCTTTATCATCGGCGCAGTCCAGGCAACTACCGGCTATCCGCGCGAATCCTTACTAAACAATTGTGAACTGTCATACGCCCACTTAATCAACCCTGACGACCAGGCCATGTGTCGTGGCTCTCGCATCCGAGCAATAATGGACGATAGCGAATGGAGTATCGACTATCGCATTTGGCACCCGCAGGAGGGCTGGCGCTGGGTAAATGAGCGCGGCGCGGCGCTGCTCGATGACAACGGTGAAGTCGCCTATCTTGAGGGTGCTATAGTTGATATCTCCGCCCGCAAGGAGGCCGAACAAGCCCTGGCCAGGACAACTCACGCCCTGCGCGAACGCTTCAAGGAGGTGGCCTGCCTCGGTGAGGTGGCTGCACTCACCAATAAAGATATATCCATAGACGAAACGCTTACTGCGATAGTCGGCCTTCTGCCGAGCGGCTGGCAGTACCCAAGCCGCTGTGAGGCAATCATAAATTACCGCGGCAAGCGGTTTGCAACCAGCCGACGAGAACCTCACGAGACGCGCCTTGAGGCCCCGATTAGGGCAAGCGGTGAAAATGTCGGCCAGATCACCGTATGGTATGTCTTACCGCCCCCTGATGCCAATCAGCCATTTCTTAACGAAGAGAGCGTCCTCTTAGAGCGTACCGCGATCATTATTGGCCAGTACCTAACCCGCAAGCACGCCGAACGTGAGCGCGAGCAGCTGATGCGGCTAATCGAGGCAAGCCCTGACTACATCGGCATGAGCAATCCAAAGGGGATGATCCTCTATCAGAACCCTGCTTTATCAAAACTAACCGGCTTCGACACCGCTGCTGATGACCTATGGTTGAGAGATGCCCACCCGGACTGGGCCGCCTCCAAGCTCTACCAAGAGGCCCTGCCCGCTGCTGCTCAGCATGGCCAATGGCAGGGAGAGACAGAGATATTTGATGGCCAGGGAGGCACGATCCCAGTCTCCCAAACTATAGTAGCCCATACCGACTCTAGGGGTGATGTTGAAATCTTCTCGACCATAATGCAGAACCTATCAGCAAGCCGTGAAGCCAACCGGGTCAAGAGTAACTTCCTTGCTGCGGTAAGCCATGACCTGCGTACCCCTTTAAATGCCATCATAGGCTACTCAGACTTGCTCTGCCGTAGCGAGCTCGATAACAAACAGCGCGAGTTTGTCGCATTGACTCGGCGCGCGAGCGATAAACTGCTCCTGCTCATCGACATGCTGCTCGACCTATCGCGCTTGGAACACGGTAAGCTCAAGCTGCGTCGTGAGGACTTCGACATAGTCGATTTCGTCACCTCTCAGGTAGAGCTTGTTAAACCACGAGCTGAAAATAAGGGGGTAGCGGTCAAGCAGCATATAGCGCCGGAGATACCGCGTTACGTAGAAGGAGATGCCGCTCGAGTCGGCCAAATTATCAGTAACCTGCTTGGCAATGCGGTCAAATTTACCGATACCGGGGAAGTGACCATCAAACTCGCGCAGGCCTCCCCAGACTGGATCCACATTCAGGTCAGCGACAACGGGCCTGGCATCCCCGAGGAGGAGCGCCAGAGAATATTCGACTGGTTCTCACAGGGCCATATGGGCACCGAACAGCGCGAAGGCACTGGTTTGGGGCTCAAGATATGCCTGGAATTGGTCAGACTGATGGGAGGGTCAATTGATGTCGACGATAACCCGGCTGGCGGGGCTATATTTACAGTCATCATCCCTCTACCCAGGGCAGCCGGCGAAGATAATCGAAGATCATCGCAGGCCGACTCTGCTGATAACCCGGCCACTGCCCAATCTAGGCAAGTCAAGCCGCCAGAAAGCTCGACGGAAGAACTGCGCAGGACCGACGGCGGGAAACTAAATTTACTTGTTGCCGAAGATGAACCGACCAATGCCCTGCTCTTATTGCGCTTGCTCGAGCAGTATGGGGTGCAGGCTGACTTGGTAAATGATGGCCAACAAGCCTATGAGAAGGGCTCAAGTGGCGATTACGACGGCATATTGATGGATGCCCAAATGCCACTTATGAGTGGGGAAGAGGCGATAGCCGCTATAAGGTCGTACGAGTCTGAACACAGTAAAGAGCCTATCCCTATCATAGTCATCTCTGCGCACGCTATTGAAGAGGTCAAAAATTCCGCGCTTGATGCGGGGGCGGATCAATACATAACTAAACCGATCAGCTTCAATGCCCTGGGTAATGTCCTGAAGAGATTGGCTGGTGTCCAAGCAATCCAGTTATAA

Protein sequences of DBSCAN-SWA_3

>AP017372|1627203:1637991|1628276_1629233_-|BAU58191.1|DBSCAN-SWA
MEIFKQDPNFNFLGHRRIGFGLSALLLVISIGSLLWQGLNLGIDFTGGTLVEVGYEESIEVSEVEAILAETEFEDAQVMHFGSPREIMIRVPPMDGVEQAQISEQIFDKLSAAHDGVDLRRVEFVGPQIGEELTEQGLMALGLALLGVLIYVAFRFEYRFAVGAVAALLHDIVIIIGFFSLTRMTFDLTVLAALLATIGYSLNDTIVVSDRIRENFLKVRKGTTEFVMNMAINQTLSRTLVTSFTTLLVVCALIFLGGEIIRGFAVALLVGVLVGSYSSIFIASATSLALGVSKQDLIPPEKEGSDQPDLEVPPSERP
>AP017372|1627203:1637991|1635651_1637991_+|BAU58198.1|DBSCAN-SWA
MINSPSPEDCERIASRMDGFLYRCRYDEELTMLFIIGAVQATTGYPRESLLNNCELSYAHLINPDDQAMCRGSRIRAIMDDSEWSIDYRIWHPQEGWRWVNERGAALLDDNGEVAYLEGAIVDISARKEAEQALARTTHALRERFKEVACLGEVAALTNKDISIDETLTAIVGLLPSGWQYPSRCEAIINYRGKRFATSRREPHETRLEAPIRASGENVGQITVWYVLPPPDANQPFLNEESVLLERTAIIIGQYLTRKHAEREREQLMRLIEASPDYIGMSNPKGMILYQNPALSKLTGFDTAADDLWLRDAHPDWAASKLYQEALPAAAQHGQWQGETEIFDGQGGTIPVSQTIVAHTDSRGDVEIFSTIMQNLSASREANRVKSNFLAAVSHDLRTPLNAIIGYSDLLCRSELDNKQREFVALTRRASDKLLLLIDMLLDLSRLEHGKLKLRREDFDIVDFVTSQVELVKPRAENKGVAVKQHIAPEIPRYVEGDAARVGQIISNLLGNAVKFTDTGEVTIKLAQASPDWIHIQVSDNGPGIPEEERQRIFDWFSQGHMGTEQREGTGLGLKICLELVRLMGGSIDVDDNPAGGAIFTVIIPLPRAAGEDNRRSSQADSADNPATAQSRQVKPPESSTEELRRTDGGKLNLLVAEDEPTNALLLLRLLEQYGVQADLVNDGQQAYEKGSSGDYDGILMDAQMPLMSGEEAIAAIRSYESEHSKEPIPIIVISAHAIEEVKNSALDAGADQYITKPISFNALGNVLKRLAGVQAIQL
>AP017372|1627203:1637991|1631515_1631893_-|BAU58194.1|DBSCAN-SWA
MLLDFFIAPAYAQQEPGTGDLVFFLVFTALLIAIFYFLLIRPQRKRMKEHQEMVEGLQVGDEVVTAGGELGRITRVSDDFVRLEVAQGVEWSIKREMVGEVLPQGTLDKARSGDDSRETETEQQS
>AP017372|1627203:1637991|1627203_1628184_-|BAU58190.1|DBSCAN-SWA
MDICDGFVGAIGRTPLIRLSALSAETGCEILAKAEWLNPGGSVKDRAAWGIINNAERAGQLRPGGIVVEGTAGNTGIGLAHICNARGYRCIIVIPETQTQEKIDLLKTLGAEVHLVPPAPYSDPNNYQKIAGRMAAEMEGAIWANQFDNTANRDAHYSTTGPEIWEQCAGQIDAFVAATGTGGTLGGVARALKERSDKVRIVLADPAGSSLYNYVYHGTPSSSSGSSITEGIGSSRVTANLQDTPIDTAYSIPDTESVPMVYRLLYQEGLFVGSSSGVNVSAALRLAKELGPGHTIVTVLCDGGARYSSRLFNSQWLAEKQLLPAG
>AP017372|1627203:1637991|1631116_1631461_-|BAU58193.1|DBSCAN-SWA
MDFLISSAWAQNEAQQGDIWFSIMLLVGMIALFYFLLIRPQSKRAKEHRQMVEDLTKGDEVVTNGGLLGRITQVGENFATVEVANGLQVQIQKHAVANVMPKGTIKELENKKGK
>AP017372|1627203:1637991|1633135_1633741_-|BAU58196.1|DBSCAN-SWA
MLTPSAALARLKEGNQRFVHGELCLHERMTHQRRLEVAAKQQPFAAILGCADSRVPAEEVFDQGVGDLFVVRVAGNYAGRGQIGSLEYAAEVLSVPLIVVLGHSCCGAIGATVDSLRSQSRAPSDALQEIIDELQPSVRPLLGDTSTADAEIIEEATIANVRSTAERLSAKSELLERAIQQGRLQVIGAKYDLATGVVEWI
>AP017372|1627203:1637991|1631971_1632997_-|BAU58195.1|tRNA|DBSCAN-SWA
MPVGTYGTVKGLTPEEVSGLGAEVILANTFHLWLRPGTEIIRQHGGLHSFMGWSGPILTDSGGFQVYSLGKLRRVSEAGVEFRSPVDGAKVFMGPEESLAVQRELGSDIVMIFDECPAYPAQWDEVKRSMELSLRWAQRSRDAHGESAAALFGIVQGGVYPQLRSASLAGLLDIGFDGYAIGGLSVGEPSAERDAVLEHLEPQLPAKQPRYLMGVGKPEDLVECVRRGIDMFDCVMPTRNARNGFLFTSQGLLRLRNSRYRQDTRAVDPACDCYTCRHFSRAYLSHLQRCNEMLGSRLATLHNLRYYQTLMAGLRAAISEGRLASFVDDFYTAREQKPPRV
>AP017372|1627203:1637991|1633925_1635614_+|BAU58197.1|DBSCAN-SWA
MPSRAQLSIVERVLATDVTAVIVLDEDGALVYANNMAYRMLGIYLPDGSTTEDRADTADDNDTAELTQQLPDEIGSFRWIASTGTPLRDVRLTLKQSSAGQRVFSINASPLPRNAHETPCVALSIHDFTEQYKYYEEALHKSQERLQLATEAAGIGIWERDLTNDTFHWDERIPTIYGIKYADLPSNYEQWRKIVLAEDLPALERSFRQARINHTRFETDFRIHAGSGEIRHIRGFGQYIYDNSGNAIKLVGVNEDITERKQVEHELAQSKERLEEAQRIARLGHWIASTDKGLLEVDLWWSPVIYEIFGRNPESFKPDFKSYLRAVHPEDRGEVIELLRRLRADHDHRSEHRIIRTDGVTKWVRAIARTEDQSPVNARRILGTIQDITEQRELQQELEYRASHDPLTDLFNRAKLQQQLRAAQAAYERHGTPFALVIADVDHFKAVNDRWGHSVGDAVLWEIGRRMSSQLRETDFLGRWGGEEFLILANHTDESGAAQLADRIRESICGSEIQGIGTITTSFGVAATEPGTYLEVLENRADKALYAAKERGRNTVMKYSQL
>AP017372|1627203:1637991|1629235_1631113_-|BAU58192.1|DBSCAN-SWA
MNRYPLWKYILVLTVLTVGVIFALPNLFGEDPSVVITTEDGEIPAEETQSEVLSFLEEEGLSPAVHEVLEERWVLRYDSTDRQMRASDMISAKLGRDYSVAMTLVPATPQFLRAIGAEPMFLGLDLRGGVHFLLQVDLDAMINDTLEGYERDIRTLMREERIRYSSIEVSDEQDLRLIFTSEDLRARAEGLISEQVEGIEIDKQPSNGDYLLIVKLDEDDQQEMINLAVQQNVTTLRNRVDELGVAEPIVQRQGSDRIVVQLPGVQDPAQAKEILGATATLEFRFVDHSDFPFTGDPDDPDAVPAGSELFPTRNVEHAGDYVLLERDYIVTGERIIDASSGYDQQTGSPEVNIRLSGTGGRIMNRATRERVGDHMGVLFIERVTETELVDGEPQRVSREIEEVISVARIREALGGRFRITGIDSSEEASNLALLLRAGALAAPIDIVEERTIGPSLGAENVERGFMAVVIGFFLVVAFMAVYYRVFGLVANLALFTNLIIIVAVLSMLQATLTLPGIAGIVLTVGMAVDANVLIFQRIREELKAGTPIQTAIDRGYSKALSTIADANVTTLIAAAMLFIFGTGPVQGFAVTLAIGLATSMFTAIVGTRAVINLIYGGRKVTELKI

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BAU58190.1|1627203_1628184_-	cysteine synthase	A0A1X9I5K7	Streptococcus_phage	1.3e-42	34.6
BAU58191.1|1628276_1629233_-	protein-export membrane protein SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	9.9e-48	42.8
BAU58192.1|1629235_1631113_-	protein-export membrane protein SecD	NA	NA	NA	NA
BAU58193.1|1631116_1631461_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.3e-10	39.8
BAU58194.1|1631515_1631893_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	3.6e-09	42.0
BAU58195.1|1631971_1632997_-|tRNA	tRNA-guanine transglycosylase	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.3e-82	47.9
BAU58196.1|1633135_1633741_-	carbonic anhydrase	NA	NA	NA	NA
BAU58197.1|1633925_1635614_+	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor	A0A127AWB9	Bacillus_phage	9.7e-14	33.7
BAU58198.1|1635651_1637991_+	sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	6.9e-34	28.1