CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP015994	Anaplasma ovis str. Haibei chromosome, complete genome	3 crisprs	NA	0	0	1	0

1. CP015994

CRISPR-Cas detection and classification

Crispr_ID: CP015994_1

• CRISPR_ID: CP015994_1
• CRISPR_location: 14993-15112
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP015994_1

Consensus_repeat	Method
CCTTAAGTTCCCTTATCGCTGCTAGTTCTTCTA	CRISPRCasFinder

spacers of CP015994_1

>1.1|15026|54|CP015994|CRISPRCasFinder
CTGTTCCTCCTAGTTTCTTCACCTTCTCTGCCCCTGCACTGAACACTCCTAATG

CRISPR arrays and Neighbor proteins around CP015994_1

CRISPR arrays

The CRISPR arrays of CP015994_1

>merge|CP015994|1|14993-15112|CRISPRCasFinder
CCTTAAGTTCCCTTATCGCTGCTAGTTCTTCTACTGTTCCTCCTAGTTTCTTCACCTTCTCTGCCCCTGCACTGAACACTCCTAATGCCTTCAGTTCCCTTATCGCTGCTAGTTCTTCTA

>CP015994|1|1|14993-15112|CRISPRCasFinder
CCTTAAGTTCCCTTATCGCTGCTAGTTCTTCTA	CTGTTCCTCCTAGTTTCTTCACCTTCTCTGCCCCTGCACTGAACACTCCTAATG
CCTTCAGTTCCCTTATCGCTGCTAGTTCTTCTA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP015994.2|ASI47381.1|27075_27345_-|30S-ribosomal-protein-S16	unknown	unknown	gnl|CDD|234588
CP015994.2|ASI47376.1|20511_21876_-|transcription-termination-factor-Rho	unknown	unknown	gnl|CDD|236490
CP015994.2|ASI47377.1|21984_22584_-|hypothetical-protein	unknown	unknown	gnl|CDD|368812
CP015994.2|ASI47367.1|206_4241_-|hypothetical-protein	unknown	unknown	unknown
CP015994.2|ASI48118.1|25649_26936_+|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase	unknown	unknown	gnl|CDD|184642
CP015994.2|ASI48115.1|12314_13472_+|P44/Msp2-family-outer-membrane-protein	unknown	unknown	gnl|CDD|366729
CP015994.2|ASI48116.1|19697_20069_+|virB2a	unknown	unknown	gnl|CDD|368210
CP015994.2|ASI47380.1|23580_24639_+|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl|CDD|234780
CP015994.2|ASI47370.1|11227_11539_+|NADH:ubiquinone-oxidoreductase	unknown	unknown	gnl|CDD|236176
CP015994.2|ASI48117.1|24774_25482_+|pteridine-reductase	unknown	unknown	gnl|CDD|187615
CP015994.2|ASI48114.1|11644_12100_+|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	unknown	unknown	gnl|CDD|275223
CP015994.2|ASI47369.1|10658_11114_-|transcriptional-regulator-NrdR	unknown	unknown	gnl|CDD|234774
CP015994.2|ASI47379.1|23225_23612_+|50S-ribosomal-protein-L20	unknown	unknown	gnl|CDD|179959
CP015994.2|ASI47378.1|22995_23196_+|50S-ribosomal-protein-L35	unknown	unknown	gnl|CDD|234676
CP015994.2|ASI47368.1|4505_10487_+|hypothetical-protein	unknown	unknown	unknown
CP015994.2|ASI47374.2|19331_19679_+|type-VI-secretion-protein	unknown	unknown	gnl|CDD|368210

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP015994.2|ASI47381.1|27075_27345_-|30S-ribosomal-protein-S16	gnl|CDD|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	5.75702e-42
CP015994.2|ASI47376.1|20511_21876_-|transcription-termination-factor-Rho	gnl|CDD|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
CP015994.2|ASI47377.1|21984_22584_-|hypothetical-protein	gnl|CDD|368812	pfam06242, DUF1013, Protein of unknown function (DUF1013). Family of uncharacterized proteins found in Proteobacteria.	2.11794e-79
CP015994.2|ASI48118.1|25649_26936_+|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase	gnl|CDD|184642	PRK14353, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	1.9554e-148
CP015994.2|ASI47379.1|23225_23612_+|50S-ribosomal-protein-L20	gnl|CDD|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	7.70798e-61
CP015994.2|ASI48116.1|19697_20069_+|virB2a	gnl|CDD|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	3.24957e-07
CP015994.2|ASI47380.1|23580_24639_+|phenylalanine--tRNA-ligase-subunit-alpha	gnl|CDD|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
CP015994.2|ASI47370.1|11227_11539_+|NADH:ubiquinone-oxidoreductase	gnl|CDD|236176	PRK08183, PRK08183, NADH:ubiquinone oxidoreductase subunit NDUFA12.	7.0283e-20
CP015994.2|ASI48117.1|24774_25482_+|pteridine-reductase	gnl|CDD|187615	cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs. Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.20211e-86
CP015994.2|ASI48114.1|11644_12100_+|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	gnl|CDD|275223	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD. Members of this protein family are the MlaD (maintenance of Lipid Asymmetry D) protein of an ABC transport system that seems to remove phospholipid from the outer leaflet of the Gram-negative bacterial outer membrane (OM), leaving only lipopolysaccharide in the outer leaflet. The Mla locus has long been associated with toluene tolerance, consistent with the proposed role in retrograde transport of phospholipid and therefore with maintaining the integrity of the OM as a protective barrier.	2.69258e-52
CP015994.2|ASI47369.1|10658_11114_-|transcriptional-regulator-NrdR	gnl|CDD|234774	PRK00464, nrdR, transcriptional repressor NrdR.	2.0541e-71
CP015994.2|ASI47378.1|22995_23196_+|50S-ribosomal-protein-L35	gnl|CDD|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	3.62784e-17
CP015994.2|ASI48115.1|12314_13472_+|P44/Msp2-family-outer-membrane-protein	gnl|CDD|366729	pfam01617, Surface_Ag_2, Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.	4.7295e-22
CP015994.2|ASI47374.2|19331_19679_+|type-VI-secretion-protein	gnl|CDD|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	1.74958e-07

Protein sequences

>CP015994.2|ASI48115.1|12314_13472_+|P44/Msp2-family-outer-membrane-protein
MKPVVCIAAVLCAFSYLVPANSNGMSGRGDFYVSLGYGPAIGTISGFRLNAAKETVAILPYIGKLGSGELSSANYDWAAESTESPVIRFENSSLLGLKGSAGCVVRGTRLEVELGHERYDFKSQKYALLSGGSATFALVKRISASATRDVEGFRAALQKELSKPALESIKKRLEDIRDHDEARESRALATKIVEKFTPLISGEGAGTAGATTTTGTGGTEVSAQGARDKAIADIVTLPLRTRGVIGRAIATSTEGMEIVEISGVRAISAILNACYDFPQVGLLVGWRMSPYACAGLGASFIGLTDRQFQPQLTCKVKAGINYSITHSLAAFIGGTFSKVLGTSYDNTSAHRAVDDASPLGKTKEKISASFGLRNVGVELGIRFGF
>CP015994.2|ASI48114.1|11644_12100_+|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD
MSHYSITEVVVGVLVSAAVVALGAHVTNRLSHEMQFYKGCHTIHAYFTDVDGLRVGSEVRVSGVNVGSVTALHLDQNNMPVVKMCVQKGVSLPVDSSATVTYADLLGKKYVDIMPGSDEAVIAEGGLLRHTSTAATLRMILEGVVNSVLNK
>CP015994.2|ASI47370.1|11227_11539_+|NADH:ubiquinone-oxidoreductase
MTSGVLCSLGLGFLTKRCVHVDSFGNRYYSATVRGKERRWVVYGGKVDPSTVTARCHLWLHYTTDDLPPAKGNRQHIPNLTGTACAYHPHRGPHNKESRGVHS
>CP015994.2|ASI47369.1|10658_11114_-|transcriptional-regulator-NrdR
MRCPFCNSVDTSVKNSRPSDCKMSVRRRRYCDSCNSRFTTVEELLLKPVKVLKKDGSVEAFDRQKLLTSIILATKKRPVTRDQIDMVVSNMFYKLEAIKGSVVPSGVIGGMVMESLFALDKVSYIRFASVYMNFSDINDFSGIVERVQEVV
>CP015994.2|ASI47368.1|4505_10487_+|hypothetical-protein
MVLTLIEDSMTIIGRRDTDREIRITPGGLISSRNGAELYSVAAVDDGHQVSFPTSRYYYLGEHNIIYENHGYALSIPPRYQFLKVVQDAGKQVLHFCDRNGKLLTVEDFNSLDAKDMRDPSSVLSALERASVPTVSNIERLTADDSALGNVEYVAQDLKSLVKLNGNQPSFALGSLGGNTSAVHMFPLKPFEALPTMIPEASVGMLNSEYALLVLDRGSGSATFSYFSPSLQHPAHVQIEPAKHRQEAINAVKSALLEHPLYLIIEGRAFSVSESTEGAMVVRNAQQAMSLLQQVKLIPDDEREDELEFDVLGGKHALKITVGNALPYPEGVQHKFEVLPGVLSNVAVSVPGAEIPIAAHTHGGHSLLFRDFTFEHTVTGETGSSVLGFKKDLTQHAFEALVRNNFALHIPATDSGEFPHINFNGKPVADGIHPLQALARSAEYTAGGENVPESVVGPKNSAPKDVPQVPQPDTMEPAGDDPSAYLQDGWESSVKGAIVPGEILFDVQAGMRKHQAVLRLHSGDDHVLPTCSYRFGQDEQLIARDIWGHKVVIPEEYRYLKVVLHNIGGQPLYKLSFCDESGKVPDAWDIARHYRDSNSLPDDLRALLDRGIVPDIIANPQFVANDLQQMSLKDLYDEQGHGPAIALAKRQGIRSVLGSKFADSEHVIVGKLASSLAYFDFAAHPYYTNLFFYDDNKVEIPPTNSKAVPDAAAAASRNMLLVLGHEGLAYMSNQDPRVGGVQLAHSSDEYEHFLTQAALALNGQPTGLSRPIALRFKVDSAIIDSHNTLGALYPVYALVGDREYPFMLNGDHVHFSRNMLELVYIPKEASPALLCVDGALGKEVIQKVLYEPILLKEGEADHDPRLRTFMVVHGDKVIVRNAVDALLKALPQGVEATTHREVDPVGGAHSPAESDDLQSQHTAGNDTNKPVGPSGSGEPSTDGPIAPYGESSHGTGSTGGIGQVPEILSLPLTLGARIEDGDERVEKFQVVLRVREGATGEQNPALPTSGYISKYGKIIHVNRPLGYTLVLAPEHQFLKVVEVFENGATQYKLALCDATGLQLTHQDFINQSATSLTDRDPSVSLSHVSGNYANFLRDSRAIYNTGRVIAAGANGDEVAVDLEDVYRTQGYLPYFRLEASESGRAIVSYNTRDGNTQDRPMFLNGEYALFEFDPALRACTLSLSNEYTAFNGADGNPDVTFHDTKLTFTSADQQYSSGMARARIKALERKPLYATVDGASLKFTTVPMAQVVEDPEIARQFIQRIIDPDYHDNQRYSVRIVAMDKYEMGLQGMGVKVGSQVIEIPISREDSGRIGFFIDTPLEIVRTTNRGKKSTQSVPNLQHDVLSEFLAQQVSLTIDPSGREYITTPSSILAPGSRKNAQGGAFLSSLMAHNASETVGDSVGEFVERARKARHAGAGEEPGTDDLLPPIQHTPGAHASDTDGVYPHSAPIAPVVDTLRLHFDLDRNAQHAPTSLGVAAHHDGGSRVAPKVSYYFTQQGELIAYMGPSLFKVLDAKYAKVVQLQDDEYVLRLCDAEGRDLDEAYSDVDKPAVILNNLDWEWDEIYESTEDKPAFTLHMGNAGPSGHAPVVLVPTPDNYLSEDYNNMPVAHLNAGLMVFIIGRDQVTLLNHSVVDSKRPSVLVWDLQDEASTTHNALLQRASDTHPLYLVIREAEVAWTLDKDATDLEFLYNPRIVEWLRNTWLGDSTQVTLRLTIENSEEDSDFLRVRALVLGDTPKVLEQPEGEGLYFDKTTYSIRVRERGTAHEVRTDTPVDIWRVQMLAAVVPEVFSLEARGNAGADVAYYVVSNADEREVSYVAQDLSPENWHAGRPSLLQAIQEHDALLSQPEHPQAGEREPDAAPVDGESDSGSGATGARGMPVFDAEQWGHSAQRLIFVEGSAAQDHKGNYTLWINAEYENMMRFHTNVNARYRTGEYTYEEAIELYNSITTEMCRHQGYTFPVIGGSVDPHGQVTVGGYSFGGIEALHKMFELT
>CP015994.2|ASI47367.1|206_4241_-|hypothetical-protein
MRTSERCPLRGSPQPPQVIRTCKPSCPVAAAGGAGGGNEMGLQFAKVEGNFHNKFDIQSELLEQLQIKLTVHSTDPLADATKQYVDRTLKTTLEVFNTNFALEPHNTPQELNVYVFEHKREFDAALEAVGIHKKNIGGIAWPSDNRIYVYKEGKNRVANLPHELSHLLFDYAISSRYGFHKGVDILNEGVGEYIQHIVEHGHRVDLDLMRRADHVLQMFKDDPQLNSTKNLDGIMAIIDEHTKLNEKGQQDPQAPKYIALKYDLGATLVHYLQTHNPSLLRESFKNSSTAPYDPHSVYSGQRASTLVTLDPFNPVMNVPAEFEKWLNENATEQFVKRHNALFVRTHSLIGFEDKIIDGEVKEVKVFDAHLENSAGGMVRVLSPVGHIGIYDKICALNPYSGDVFDIPYEYHFLKPVIVDGVRQYTYCNASGEEYLLGKYYKNVNSISKIMTKYDHETAKIRESLVKAEKAYDQYLQTQNAHSEHALRKAIEHASVMLSGGLNNIPESVPHMDFATIAGTEYENRSIGLNVQVKMLGAAYAEYVTRHAYALMLGHVNSAESLMICKALKHLLYIDPIRMRGDDQSALKELWRQQGILSLEATGKGDVSGVSVFLPGGKKIAELPSDSEAFVVFENGQAGFRNFVTSDGLKSVYTTYSEAPVAVVTLDERGNKISQFVRGTVDNGTSVVVGLNKFSDPKVIGHSGDDSITVSEGVTIEPATNAPEIGPGTVARKGEVVDDRGTDRTSDDTYDAAVYSNNEMVIQRLSRLQFYMREERRDEDGNVVDNPAFFIRDVAASRVLQFPDSITHLKLVRTENGTTRLVPCTKDGNTNPPGMPYNTKGYTYIDPIFAYQRIEADWIAKHAKLDLIDFTRYADGTLFKLRWNADDPQIPKTEQGEIIRVHDQSHFARAELIYEPENVKIGELSNAPSFFQGDIFLAFDPNYSHSDFVSSLHEQEVELQDGGNGTKRVSLTGKGDLGTDSGFSDYYSFMQRQWGDSPELVQEIHKRAGIVENTPADQGAIDATKVLKVDASEHDLQQLRGSMLYLLASDRVVNGQKVHEHVFFIADINDGSYFQLPKAITHLKVVTHNGQKHLVPSTSSGLENPKGMPQDLGEHRYISSVLVHENAVTDHMSRIPVTNVLLANLNKYADGTLLEIRDNGNISYDGIGATGDGYSELVHLFDKHGNEVGVLSKHPNLLVGKVALGTRKEQAPGLGEVPTEAVDHGVHGTKSSESDTVSTRSAHDDALDDFLRARHDNMRASGGSGTNKVQRTPRSNDDYTEIESGMLSDPTLPHTDPHITNAGVRGGTIPNRDYTDDALIDSVAWNTHCSDGTQCHAHEHNLLPL
>CP015994.2|ASI47374.2|19331_19679_+|type-VI-secretion-protein
MVALIWLFITAGSTYADTTSNATAADDTATKVICNVIVFVQKLGLPIMTGVILGSSIMAIFGRLAWPAIVMLVVFTAIFFGAGKLMAKFAAGLGSEIGDASKFECKGGGQTGTTS
>CP015994.2|ASI48116.1|19697_20069_+|virB2a
MVMLLRFLLIAGVLAWGIFHGVPAGASTTPAADDTATKVICNVIGFVQKLGLPIMTGVILGSSIMAIFGKLAWPAIVMLVVFTAIFFGAGKLMAKFAAGLNDTGVGSAENFKCEDGGRATLSK
>CP015994.2|ASI47376.1|20511_21876_-|transcription-termination-factor-Rho
MFNKNKRRSRASSSRSVAERNAENYTLPKEGRVLDLCELKQKSTEELLVTAEELGVVSNGRMLKQEIIFQLMKRVISEGGIAVGGGVVETLPDGFGFLRSAEANYAASSDDIYISAGQIKKFNLRTGDIVSGEIRAPGEKERYFTLVKAYSINYTEIGKLQRYVHFDDLIPLYPEERILLECKEGFGGEKKDISMRAIDIIAPLGKGQRALIVAPPRVGKTVILQQIAHSIAMNHPNMELIVLLIGERPEEVTDMLRSVKGEVVSSTFDEPAYRHVQLAEIVIERAKRMVEHKKEVVILLDSITRLARAYNEVMPSSGKVLTGGVDSNALQRPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNCEIILDRKIADKRIYPAIDISKSGTRKEDMLIESAFLKKVWLLRRLLSAMGPVEAMEFLRDKLSIAKDNNDFFEMMNS
>CP015994.2|ASI47377.1|21984_22584_-|hypothetical-protein
MSSSNEGTPLMPRAVAVWLVDNTALTFEQIAEFCGLHLLEVKGIADGEVAKGVVGCNPVAMGQVTKEEIEACQKDPTRIPKLVAHRGVATGKLSRRRGARYTPVARRRDKPDAVCWILKYCAEMHDSQIAKLIGTTKATIAAVRNKEHWNSSNIKPRDPVLLGLCTQADLDEAIMKAQMVAERERRVRNMNEEIQDQKA
>CP015994.2|ASI47378.1|22995_23196_+|50S-ribosomal-protein-L35
MPKLKTKSSAKKRFKVTASGRVMSAQSTKRHGMTKRSKRSLRTRRGIAQMSAPDARIVASFMPYSL
>CP015994.2|ASI47379.1|23225_23612_+|50S-ribosomal-protein-L20
MARVKRGVTARARHKKVIALAKGYRGRSKNCYRAALQRLEKALAYAYRDRRNRKRDFRRLWITRINAAARQWGIKYSQLMRGMALCGIELNRKMLAEMAVNDKAAFKEVVGTVAGTCGYACAVDPQDK
>CP015994.2|ASI47380.1|23580_24639_+|phenylalanine--tRNA-ligase-subunit-alpha
MLVLLIRKINDLSEEAKACVATCGSAEELEAARARYVGRSGTLTALLRQISTIQDIDERKAVGSAANAACAALRLAIQDRESQLARERLHSRLAGERIDVTLPARPRAYGKIHPISGVIREISGILSELGFVVVHGPELEDEFHVFDALNTPEHHPARAENDTFYMTKRLNGRRVVLRTHTSSMQIRAMESNPNPPIKIISPGRVYRNDWDATHSPVFHQVEGLFVDEHVSMGHLKYCINYFLNRFFARKVETRMRASFFPFTEPSAEIDVKDKHQKWVEVLGCGMVHPAVLKNVNIDPEKYRGFAFGMGVERMAMLKYGIADLRNFYSNRLEWLNHYGFCFTDILGCTSRA
>CP015994.2|ASI48117.1|24774_25482_+|pteridine-reductase
MHKRGVIITGAARRVGRAVAVFLAARHGYDVVVHYNRSHSEALDLQRVIQEDYGKRCLLFQSDLRDFAALGRLVAYAFEEIPHCDTLINNASVFYASTIGQLREGELEENYKIHVKAPIFLTQHFARMCAAKRGNVVNIIDTNITRTQTRYFAYLLSKKALSDFTVMAAEEFAVQLQVNAICPPKIPDREIDGVKSLEDMEAPCLKNFLDAVATLVDRNNTLSGKLIHTNPATMP
>CP015994.2|ASI48118.1|25649_26936_+|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase
MDIVILAAGRGSRMCSTTPKVLHKLGNAPIVEHVLRLASELHYHHTVIVTSAAVHDSITVLARKHNLHFSVVPQGGVAGTGGAVSSALQALKARPEGVILILYGDTPLLDKATICHVLDKLSNGAEIVFVAFKSSDNQYGKMVLDSTGSVLNITYRCDTNDLAVSGVVAGYRQVISELLSGLSFRGGELYLTDIVQSAAEKNIKVGYVVADECKAMGINTRADLAAAEACFQRIKRDNFLQSGVTLTSPDQVFFSIDTQITKDVVVHPYVVFGKGVTVESGAEILSYSHLESCHIKQGATIGPFARIRGNSTIDGGCVVGNFVEIKESSLGKMSKVKHLSYLGNSTIGKNTNVGAGTVICNYDGRDKQHSDIGDHCFVGANSTIVSPVSVGESAVIAAGSVITEDLPPQSLGIARSRQTTKLGYKTKE
>CP015994.2|ASI47381.1|27075_27345_-|30S-ribosomal-protein-S16
MSVKIRLMRLGAKKKPFYRVVVSDSRVQRDGKFIEHVGFYDPMVQCGEPGFLKIDADRLSYWLSVGAQPTDRVSWFIKKGFVKVHPAGT

Crispr_ID: CP015994_2

• CRISPR_ID: CP015994_2
• CRISPR_location: 30097-30184
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP015994_2

Consensus_repeat	Method
CTGCTATGGTGATACCAGTAAGTTTGAGTG	CRISPRCasFinder

spacers of CP015994_2

>2.1|30127|28|CP015994|CRISPRCasFinder
TAGGGGCAGAGTGCAGGTGAGGTGCTAG

CRISPR arrays and Neighbor proteins around CP015994_2

CRISPR arrays

The CRISPR arrays of CP015994_2

>merge|CP015994|2|30097-30184|CRISPRCasFinder
CTGCTATGGTGATACCAGTAAGTTTGAGTGTAGGGGCAGAGTGCAGGTGAGGTGCTAGCTGCTATGGTGATGCCAGTAAGTTTGAGTG

>CP015994|2|2|30097-30184|CRISPRCasFinder
CTGCTATGGTGATACCAGTAAGTTTGAGTG	TAGGGGCAGAGTGCAGGTGAGGTGCTAG
CTGCTATGGTGATGCCAGTAAGTTTGAGTG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP015994.2|ASI48119.1|27643_28924_+|MFS-transporter	unknown	unknown	gnl|CDD|340927
CP015994.2|ASI47376.1|20511_21876_-|transcription-termination-factor-Rho	unknown	unknown	gnl|CDD|236490
CP015994.2|ASI47389.1|39529_39850_-|NADH-ubiquinone-oxidoreductase	unknown	unknown	gnl|CDD|368126
CP015994.2|ASI47381.1|27075_27345_-|30S-ribosomal-protein-S16	unknown	unknown	gnl|CDD|234588
CP015994.2|ASI47377.1|21984_22584_-|hypothetical-protein	unknown	unknown	gnl|CDD|368812
CP015994.2|ASI47383.1|31738_32341_+|orotate-phosphoribosyltransferase	unknown	unknown	gnl|CDD|234771
CP015994.2|ASI48118.1|25649_26936_+|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase	unknown	unknown	gnl|CDD|184642
CP015994.2|ASI47379.1|23225_23612_+|50S-ribosomal-protein-L20	unknown	unknown	gnl|CDD|179959
CP015994.2|ASI48116.1|19697_20069_+|virB2a	unknown	unknown	gnl|CDD|368210
CP015994.2|ASI47380.1|23580_24639_+|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl|CDD|234780
CP015994.2|ASI47384.1|32374_33181_+|adenylyltransferase	unknown	unknown	gnl|CDD|238386
CP015994.2|ASI48117.1|24774_25482_+|pteridine-reductase	unknown	unknown	gnl|CDD|187615
CP015994.2|ASI47392.1|41040_41853_-|P-type-conjugative-transfer-protein-VirB9	unknown	unknown	gnl|CDD|377058
CP015994.2|ASI47391.1|40684_41020_-|thioredoxin	unknown	unknown	gnl|CDD|200072
CP015994.2|ASI47385.1|33529_34381_-|P44/Msp2-family-outer-membrane-protein	unknown	unknown	gnl|CDD|366729
CP015994.2|ASI47388.1|38505_39420_-|permease	unknown	unknown	gnl|CDD|223751
CP015994.2|ASI47378.1|22995_23196_+|50S-ribosomal-protein-L35	unknown	unknown	gnl|CDD|234676
CP015994.2|ASI47382.1|30565_31639_+|recombinase-RecA	unknown	unknown	gnl|CDD|236476
CP015994.2|ASI47390.1|39900_40104_+|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl|CDD|273536
CP015994.2|ASI48120.1|34666_35056_+|virB2a	unknown	unknown	gnl|CDD|368210

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP015994.2|ASI48119.1|27643_28924_+|MFS-transporter	gnl|CDD|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.59686e-92
CP015994.2|ASI47376.1|20511_21876_-|transcription-termination-factor-Rho	gnl|CDD|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
CP015994.2|ASI47389.1|39529_39850_-|NADH-ubiquinone-oxidoreductase	gnl|CDD|368126	pfam04800, ETC_C1_NDUFA4, ETC complex I subunit conserved region. Family of pankaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein.	1.18705e-42
CP015994.2|ASI47381.1|27075_27345_-|30S-ribosomal-protein-S16	gnl|CDD|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	5.75702e-42
CP015994.2|ASI47377.1|21984_22584_-|hypothetical-protein	gnl|CDD|368812	pfam06242, DUF1013, Protein of unknown function (DUF1013). Family of uncharacterized proteins found in Proteobacteria.	2.11794e-79
CP015994.2|ASI47383.1|31738_32341_+|orotate-phosphoribosyltransferase	gnl|CDD|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	6.9093e-62
CP015994.2|ASI48118.1|25649_26936_+|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase	gnl|CDD|184642	PRK14353, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	1.9554e-148
CP015994.2|ASI47379.1|23225_23612_+|50S-ribosomal-protein-L20	gnl|CDD|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	7.70798e-61
CP015994.2|ASI48116.1|19697_20069_+|virB2a	gnl|CDD|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	3.24957e-07
CP015994.2|ASI47380.1|23580_24639_+|phenylalanine--tRNA-ligase-subunit-alpha	gnl|CDD|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
CP015994.2|ASI47384.1|32374_33181_+|adenylyltransferase	gnl|CDD|238386	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). .	8.84711e-97
CP015994.2|ASI48117.1|24774_25482_+|pteridine-reductase	gnl|CDD|187615	cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs. Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.20211e-86
CP015994.2|ASI47392.1|41040_41853_-|P-type-conjugative-transfer-protein-VirB9	gnl|CDD|377058	pfam03524, CagX, Conjugal transfer protein. This family includes type IV secretion system CagX conjugation protein. Other members of this family are involved in conjugal transfer to plant cells of T-DNA.	3.6645e-81
CP015994.2|ASI47391.1|40684_41020_-|thioredoxin	gnl|CDD|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	3.29111e-37
CP015994.2|ASI47385.1|33529_34381_-|P44/Msp2-family-outer-membrane-protein	gnl|CDD|366729	pfam01617, Surface_Ag_2, Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.	7.8039e-102
CP015994.2|ASI47388.1|38505_39420_-|permease	gnl|CDD|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	2.54957e-21
CP015994.2|ASI47378.1|22995_23196_+|50S-ribosomal-protein-L35	gnl|CDD|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	3.62784e-17
CP015994.2|ASI47382.1|30565_31639_+|recombinase-RecA	gnl|CDD|236476	PRK09354, recA, recombinase A; Provisional.	0
CP015994.2|ASI47390.1|39900_40104_+|exodeoxyribonuclease-VII-small-subunit	gnl|CDD|273536	TIGR01280, xseB, exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides. [DNA metabolism, Degradation of DNA].	3.85863e-12
CP015994.2|ASI48120.1|34666_35056_+|virB2a	gnl|CDD|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	7.96525e-07

Protein sequences

>CP015994.2|ASI48119.1|27643_28924_+|MFS-transporter
MGRRVTNAVLSTIACNTLVWYDFILFGSLAGTIGELFFPQEDRYLSLLSSFCVVAVGFGMRPFGASVLGHIGDRYGRRVALVLSIAGISIPVGFMVVIPTYESVGVLAPVLLVVCRLVQGIALGGEAGNATFLIEHSKRNSTGLFGSFEVLSAVLGSVLALTVKIVVRHFTGDNFGVWGWRIPFVIGFVTGIISIYVRAKTGESPAYEAQAEREHVLTDESPVRHLFKHYKRPLLLAICIDSVENCSFHTLMVFFISYVRDFSPLVVISPQVSEVIEMVSIMIAGVLTVAFGALSDTLGRKKVIGGASVMLLFVSMPVFWMLSQGSALFIGLGYLLFVIPFAAALGPSSAAMSELFPTKVRYTGFGIARNVSSAMCGGVAPALCTWLVKTTGLRVAPAFCTMFWALVALFALTRIRKEDVYRDWLK
>CP015994.2|ASI47381.1|27075_27345_-|30S-ribosomal-protein-S16
MSVKIRLMRLGAKKKPFYRVVVSDSRVQRDGKFIEHVGFYDPMVQCGEPGFLKIDADRLSYWLSVGAQPTDRVSWFIKKGFVKVHPAGT
>CP015994.2|ASI48118.1|25649_26936_+|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase
MDIVILAAGRGSRMCSTTPKVLHKLGNAPIVEHVLRLASELHYHHTVIVTSAAVHDSITVLARKHNLHFSVVPQGGVAGTGGAVSSALQALKARPEGVILILYGDTPLLDKATICHVLDKLSNGAEIVFVAFKSSDNQYGKMVLDSTGSVLNITYRCDTNDLAVSGVVAGYRQVISELLSGLSFRGGELYLTDIVQSAAEKNIKVGYVVADECKAMGINTRADLAAAEACFQRIKRDNFLQSGVTLTSPDQVFFSIDTQITKDVVVHPYVVFGKGVTVESGAEILSYSHLESCHIKQGATIGPFARIRGNSTIDGGCVVGNFVEIKESSLGKMSKVKHLSYLGNSTIGKNTNVGAGTVICNYDGRDKQHSDIGDHCFVGANSTIVSPVSVGESAVIAAGSVITEDLPPQSLGIARSRQTTKLGYKTKE
>CP015994.2|ASI48117.1|24774_25482_+|pteridine-reductase
MHKRGVIITGAARRVGRAVAVFLAARHGYDVVVHYNRSHSEALDLQRVIQEDYGKRCLLFQSDLRDFAALGRLVAYAFEEIPHCDTLINNASVFYASTIGQLREGELEENYKIHVKAPIFLTQHFARMCAAKRGNVVNIIDTNITRTQTRYFAYLLSKKALSDFTVMAAEEFAVQLQVNAICPPKIPDREIDGVKSLEDMEAPCLKNFLDAVATLVDRNNTLSGKLIHTNPATMP
>CP015994.2|ASI47380.1|23580_24639_+|phenylalanine--tRNA-ligase-subunit-alpha
MLVLLIRKINDLSEEAKACVATCGSAEELEAARARYVGRSGTLTALLRQISTIQDIDERKAVGSAANAACAALRLAIQDRESQLARERLHSRLAGERIDVTLPARPRAYGKIHPISGVIREISGILSELGFVVVHGPELEDEFHVFDALNTPEHHPARAENDTFYMTKRLNGRRVVLRTHTSSMQIRAMESNPNPPIKIISPGRVYRNDWDATHSPVFHQVEGLFVDEHVSMGHLKYCINYFLNRFFARKVETRMRASFFPFTEPSAEIDVKDKHQKWVEVLGCGMVHPAVLKNVNIDPEKYRGFAFGMGVERMAMLKYGIADLRNFYSNRLEWLNHYGFCFTDILGCTSRA
>CP015994.2|ASI47379.1|23225_23612_+|50S-ribosomal-protein-L20
MARVKRGVTARARHKKVIALAKGYRGRSKNCYRAALQRLEKALAYAYRDRRNRKRDFRRLWITRINAAARQWGIKYSQLMRGMALCGIELNRKMLAEMAVNDKAAFKEVVGTVAGTCGYACAVDPQDK
>CP015994.2|ASI47378.1|22995_23196_+|50S-ribosomal-protein-L35
MPKLKTKSSAKKRFKVTASGRVMSAQSTKRHGMTKRSKRSLRTRRGIAQMSAPDARIVASFMPYSL
>CP015994.2|ASI47377.1|21984_22584_-|hypothetical-protein
MSSSNEGTPLMPRAVAVWLVDNTALTFEQIAEFCGLHLLEVKGIADGEVAKGVVGCNPVAMGQVTKEEIEACQKDPTRIPKLVAHRGVATGKLSRRRGARYTPVARRRDKPDAVCWILKYCAEMHDSQIAKLIGTTKATIAAVRNKEHWNSSNIKPRDPVLLGLCTQADLDEAIMKAQMVAERERRVRNMNEEIQDQKA
>CP015994.2|ASI47376.1|20511_21876_-|transcription-termination-factor-Rho
MFNKNKRRSRASSSRSVAERNAENYTLPKEGRVLDLCELKQKSTEELLVTAEELGVVSNGRMLKQEIIFQLMKRVISEGGIAVGGGVVETLPDGFGFLRSAEANYAASSDDIYISAGQIKKFNLRTGDIVSGEIRAPGEKERYFTLVKAYSINYTEIGKLQRYVHFDDLIPLYPEERILLECKEGFGGEKKDISMRAIDIIAPLGKGQRALIVAPPRVGKTVILQQIAHSIAMNHPNMELIVLLIGERPEEVTDMLRSVKGEVVSSTFDEPAYRHVQLAEIVIERAKRMVEHKKEVVILLDSITRLARAYNEVMPSSGKVLTGGVDSNALQRPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNCEIILDRKIADKRIYPAIDISKSGTRKEDMLIESAFLKKVWLLRRLLSAMGPVEAMEFLRDKLSIAKDNNDFFEMMNS
>CP015994.2|ASI48116.1|19697_20069_+|virB2a
MVMLLRFLLIAGVLAWGIFHGVPAGASTTPAADDTATKVICNVIGFVQKLGLPIMTGVILGSSIMAIFGKLAWPAIVMLVVFTAIFFGAGKLMAKFAAGLNDTGVGSAENFKCEDGGRATLSK
>CP015994.2|ASI47382.1|30565_31639_+|recombinase-RecA
MSGGKKDVESEKQKALDAAISQIERAFGRGAIMKLKQHPAEKMDSVSTGSIALDAALGIGGLPKGRIVEIFGPESSGKTTLALHVIAEAQKQGGNCAFIDAEHALDTVYARKLGVNVGDLIVSQPDTGEQALHIVEYLVCSGAIDVIVVDSVAALTPRAEIEGDMGDQHMGLQARLLSHALRKLTSVVSKANCILVFINQIRIKIGVIYGNPEVTTGGSALKFYTSIRLDIRKVSAIKDKDSVIGNQTRVKVVKNKVAPPFKQAEFDIVYNEGISKLGEIVDMGVKFGFVEKSGAHYSYGAVKLGQGRENAKGYLKSNPNIAHELEQKIRAYLAESMHNSDLFAADGRAEVLEEEVF
>CP015994.2|ASI47383.1|31738_32341_+|orotate-phosphoribosyltransferase
MKGKGIYTSDDVLDVLMERSAILKGHFILSSGLHSDTYIQCAKLQEVPSVCEDMCAALLRRSNDVLGDLKVDVVASPAMGAIVFGYEIARQLGVNFVFFERVQGNFELRRGFGIDPNSRVLIVEDVITTGGSSLEVFDAVTAFGGEVVAELSIINRGNCANMPFPVVSLLEMDIQNYAADDVPDELKSIPVSKPGSRSLS
>CP015994.2|ASI47384.1|32374_33181_+|adenylyltransferase
MCASRIDFRGRYARQVLVPEIGYHGHNKLRQSRVLIVGCGGLGSMVIPLLAASGVGRLVVCDDDTVKVSNLNRQTIYKERDLGRRKVRAAAEFIKHLNSDVEVCEVDSAIGPKNFETILPDVDIIVDCVDRLAVKMFLNDACVTMHKTLVHCAAIGFTGEVMVIPPGGKPCYRCFFEGKQVSTELNCASAGVASPTVGVVGSMAAAEVIKYIVGNHQSSVGKLYRVDLRSNRFTSYELAVNSLCSCCGDAASVDPHDLESYEGKLRIE
>CP015994.2|ASI47385.1|33529_34381_-|P44/Msp2-family-outer-membrane-protein
MNYRELFTGGLSAATVCACSLLVSGAVVASPMSHEVASEGSGVMGGSFYVSAAYSPAFPSVTSFDMRESSRETSYVRGYDKSVATIDVSAPANFSKSGYTFAFSKNLLTSFDGAVGYSLGGARVELEASYRRFATLADGQYAKSGAESLAAITRDAVITENNYFVVKIDEITNTSVMLNGCYDVLHTDLPVSPYVCAGIGASFVDISKQVTTKLAYRGKVGISYQFTPEISLVVGGFYHGLFDESYKDIPAHNSVKFPGEAKASVKAHIADYGFNLGARFLFN
>CP015994.2|ASI48120.1|34666_35056_+|virB2a
MVMLLRFLLIAGVLAWGIFHGVPVGAAAQTNTTPAADDTATKVICNVIGFVQKLGLPIMTGVILGSSIMAIFGKLAWPAIVMLVVFTAIFFGAGKLMAKFAAGINGDEASKFNCVDGGNATLGASGVRR
>CP015994.2|ASI47388.1|38505_39420_-|permease
MFFALMLKVLPAYVTILLGFVAGRVVKLDCATIGKLLFYCVGPIVVFFGILKINITPELVLLPVITFVICCTMSLIVYNVSSLVFRDHIRNMLAFTSGSSSMGFFGLPIAIALFDESTVSIYLLCYVGMLFFENSFGFYIATRGLYTPRQCFRQLITLPTFHAAVAALLCNHFEMRVPEFLLRVPTDLASTYMVLGTMLLGISVANIKDFAINWKLMALTVLIKYVAWPLLALLLIFLDRKGPCLYDSQVYQALILLAIIPISSTGVILAYTTNYKPDVAAIMLLISTLVGIFYVPFMISLLLY
>CP015994.2|ASI47389.1|39529_39850_-|NADH-ubiquinone-oxidoreductase
MQVPGGSRVPVARIYRPARNVMQSGAYGRSFWCIEFEPSCSLYRDSLMGWVGSRDTAQQVRLRFPNKEGAISYAKARGILYVVLPDQATRKKPKSYSENFLRDREL
>CP015994.2|ASI47390.1|39900_40104_+|exodeoxyribonuclease-VII-small-subunit
MSINSGGKFEEAVRELERIVEELERGDVSLDRSVELYNRGRELHKYCNEVIKGLTLKIESLGEEDLE
>CP015994.2|ASI47391.1|40684_41020_-|thioredoxin
MSDIAEVGDSDFAKRVCTGSGLVLVDFWAPWCGPCVALTPQLEKLAQKYEGRLKIYKLNVQDNQDTPVTYGVSAVPTLVIFSDGKELSRVVGANLQQIIGAIDSAVGGAAQ
>CP015994.2|ASI47392.1|41040_41853_-|P-type-conjugative-transfer-protein-VirB9
MRKACMVCAVALLCSSTAFGKQEPRSIAADDHIKVMNFNPQSIHRYTGFYGYQSSILFEAGEVIDTVSMGDSTGWQLVPKGNRLFIKPVGDNADTNVTIITNRRVYYFELHAEEASGLDDPRLAYEVRFVYPAASSVDAESSSDLGGGVSFPTYQNDVPDLSDPEVAKKGLNFDYSVSHAAGSANIVPLRVFDDRRFTYMQFSNVNGDLPSIFNVDAEGYESLVNFRIVGDYVVVERVSPAFTLRYGSSTACVFNEKMYRAASASRRGRG

Crispr_ID: CP015994_4

• CRISPR_ID: CP015994_4
• CRISPR_location: 1026854-1026966
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP015994_4

Consensus_repeat	Method
CTTGGTGGTGCCGGAGGTTCCTGAGGTTAGTAGGT	CRISPRCasFinder

spacers of CP015994_4

>4.1|1026889|43|CP015994|CRISPRCasFinder
GGCAATGCCAAGAGCTTTGGGTGCTGATGGTGGTAATGCTGGA

CRISPR arrays and Neighbor proteins around CP015994_4

CRISPR arrays

The CRISPR arrays of CP015994_4

>merge|CP015994|4|1026854-1026966|CRISPRCasFinder
CTTGGTGGTGCCGGAGGTTCCTGAGGTTAGTAGGTGGCAATGCCAAGAGCTTTGGGTGCTGATGGTGGTAATGCTGGACTTGGTGGTGCTGGAGGTTCCTGAGGTTAGTAGGT

>CP015994|4|4|1026854-1026966|CRISPRCasFinder
CTTGGTGGTGCCGGAGGTTCCTGAGGTTAGTAGGT	GGCAATGCCAAGAGCTTTGGGTGCTGATGGTGGTAATGCTGGA
CTTGGTGGTGCTGGAGGTTCCTGAGGTTAGTAGGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP015994.2|ASI48273.1|1019999_1020437_-|nucleoside-diphosphate-kinase	unknown	unknown	gnl|CDD|179085
CP015994.2|ASI47996.1|1036837_1037146_+|preprotein-translocase-subunit-SecG	unknown	unknown	gnl|CDD|377143
CP015994.2|ASI47989.1|1025045_1026260_+|P44/Msp2-family-outer-membrane-protein	unknown	unknown	gnl|CDD|366729
CP015994.2|ASI47988.1|1024628_1025033_+|opag1	unknown	unknown	gnl|CDD|284672
CP015994.2|ASI47993.1|1032143_1034396_-|NADP-dependent-malic-enzyme	unknown	unknown	gnl|CDD|235976
CP015994.2|ASI47985.1|1021668_1022601_+|P44/Msp2-family-outer-membrane-protein	unknown	unknown	gnl|CDD|366729
CP015994.2|ASI47998.1|1039116_1040226_-|riboflavin-biosynthesis-protein-RibD	unknown	unknown	gnl|CDD|273015
CP015994.2|ASI47986.1|1022767_1023688_+|P44/Msp2-family-outer-membrane-protein	unknown	unknown	gnl|CDD|366729
CP015994.2|ASI47991.1|1027507_1029022_-|cation:proton-antiporter	unknown	unknown	gnl|CDD|183662
CP015994.2|ASI47981.1|1014791_1016228_+|isocitrate-dehydrogenase	unknown	unknown	gnl|CDD|236416
CP015994.2|ASI47987.1|1023726_1024617_+|P44/Msp2-family-outer-membrane-protein	unknown	unknown	gnl|CDD|366729
CP015994.2|ASI47999.1|1040306_1040945_+|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl|CDD|366423
CP015994.2|ASI47992.1|1029237_1031955_-|hypothetical-protein	unknown	unknown	unknown
CP015994.2|ASI47983.1|1018593_1019847_+|poly(A)-polymerase	unknown	unknown	gnl|CDD|223690
CP015994.2|ASI47997.1|1037158_1038841_+|CTP-synthetase	unknown	unknown	gnl|CDD|235437
CP015994.2|ASI47982.1|1016368_1018129_+|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl|CDD|273193
CP015994.2|ASI47994.1|1034646_1035321_+|ABC-transporter	unknown	unknown	gnl|CDD|224059
CP015994.2|ASI47995.1|1035480_1036419_-|recombinase-XerD	unknown	unknown	gnl|CDD|274043
CP015994.2|ASI47984.1|1020668_1021238_+|transcriptional-regulator	unknown	unknown	gnl|CDD|238045
CP015994.2|ASI47990.1|1027185_1027494_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP015994.2|ASI48273.1|1019999_1020437_-|nucleoside-diphosphate-kinase	gnl|CDD|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	1.32953e-87
CP015994.2|ASI47996.1|1036837_1037146_+|preprotein-translocase-subunit-SecG	gnl|CDD|377143	pfam03840, SecG, Preprotein translocase SecG subunit.	7.80897e-13
CP015994.2|ASI47989.1|1025045_1026260_+|P44/Msp2-family-outer-membrane-protein	gnl|CDD|366729	pfam01617, Surface_Ag_2, Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.	1.30199e-51
CP015994.2|ASI47988.1|1024628_1025033_+|opag1	gnl|CDD|284672	pfam07306, DUF1455, Protein of unknown function (DUF1455). This family consists of several hypothetical putative outer membrane proteins which appear to be specific to Anaplasma marginale and Anaplasma ovis.	7.29389e-26
CP015994.2|ASI47995.1|1035480_1036419_-|recombinase-XerD	gnl|CDD|274043	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	1.5201e-105
CP015994.2|ASI47985.1|1021668_1022601_+|P44/Msp2-family-outer-membrane-protein	gnl|CDD|366729	pfam01617, Surface_Ag_2, Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.	5.33289e-26
CP015994.2|ASI47998.1|1039116_1040226_-|riboflavin-biosynthesis-protein-RibD	gnl|CDD|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	2.86125e-99
CP015994.2|ASI47986.1|1022767_1023688_+|P44/Msp2-family-outer-membrane-protein	gnl|CDD|366729	pfam01617, Surface_Ag_2, Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.	9.82738e-11
CP015994.2|ASI47991.1|1027507_1029022_-|cation:proton-antiporter	gnl|CDD|183662	PRK12662, PRK12662, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
CP015994.2|ASI47981.1|1014791_1016228_+|isocitrate-dehydrogenase	gnl|CDD|236416	PRK09222, PRK09222, NADP-dependent isocitrate dehydrogenase.	0
CP015994.2|ASI47987.1|1023726_1024617_+|P44/Msp2-family-outer-membrane-protein	gnl|CDD|366729	pfam01617, Surface_Ag_2, Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.	1.48285e-32
CP015994.2|ASI47999.1|1040306_1040945_+|nucleotide-exchange-factor-GrpE	gnl|CDD|366423	pfam01025, GrpE, GrpE.	7.28869e-48
CP015994.2|ASI47993.1|1032143_1034396_-|NADP-dependent-malic-enzyme	gnl|CDD|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
CP015994.2|ASI47983.1|1018593_1019847_+|poly(A)-polymerase	gnl|CDD|223690	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis].	5.73732e-65
CP015994.2|ASI47997.1|1037158_1038841_+|CTP-synthetase	gnl|CDD|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP015994.2|ASI47994.1|1034646_1035321_+|ABC-transporter	gnl|CDD|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	3.37232e-89
CP015994.2|ASI47984.1|1020668_1021238_+|transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.33611e-13
CP015994.2|ASI47982.1|1016368_1018129_+|single-stranded-DNA-specific-exonuclease-RecJ	gnl|CDD|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0

Protein sequences

>CP015994.2|ASI47989.1|1025045_1026260_+|P44/Msp2-family-outer-membrane-protein
MSAVSYRKLPLGGVLMALVAAVAPVHSLLAAPTAGAGTGGEGLFSGAGAGSFYIGLDYSPAFGSIKDFKVQEAGGTTRGVFPYKRDTTGRVDFKVHNFDWGAPEPKISFKDSMLTALEGSIGYSIGGARVEVEVGYERFVIKGGKKSNEDTASVFLLGKELAYDTARGQVDRLANALGKMTKSEAKKWGTAVEGATGGDALSRKVCGTANSGSGSNCGTTGSNGNGKLSTAFTEDTTTLLSAADTTINTAGMATNINGLTKDEKAIVAGAFARAVEGAEVIEVRAIGSTSVMLNACYDLLTDGIGVVPYACAGVGGNFVSVVDGHINPKFAYRVKAGLSYALTPEISAFAGAFYHKVLGDGDYDELPLSPIADYTGPAGKNKDTGIASFTFAYFGGELGVRFAF
>CP015994.2|ASI47988.1|1024628_1025033_+|opag1
MGIGMSCRAFFLRGVLIFALLPGSLATARPLLLAVVDGTAWGQTPGGGPLVREASTTVGKLAPAPATSASRSSRVPSSLMGESSLPAKRLSPAQELELWGTALQPSLTPSSWVFGRTAMSGVRSFLERTVFLVF
>CP015994.2|ASI47987.1|1023726_1024617_+|P44/Msp2-family-outer-membrane-protein
MSRKSLFVLPYLLFFVAVSATGNGAALNVGSTVPSVGAEGKLYIAAQYKPALPVVRGFAIRESRLTAPSKLFRLMPSTSALTTEQASGTLLDPPLLRALRVEGNFEPGYTPSYEVSMYGVSGVLGYSRMGTRVELEVSFEDFRVKKSGKPVLKGGHEYFAAERAGGTQRVVFANRAISAGAAVVSVCHDLPSGPSGGGIVPYACLGGGVEFLDALGMANTRFAYQAKVGAALDLHPRVGIFAAGYYRGTLERAIRPLPTVVAIPATPSAGSPSLPSFEGNAGVRYLGVEAGIRVSL
>CP015994.2|ASI47986.1|1022767_1023688_+|P44/Msp2-family-outer-membrane-protein
MCGLHTLPSSVRRWGGFGSVCWIVCMSIRGKACYGILACGALVAAFGAVCTSASAGARGFYAALGGELGVANFGFPSVKTRGVPGTMLGVDRGSEQLVRFAGLDLAVPARGGFSAHYLPKYKHSLGLSGSLGYSFGSFRLQLSTYNSSFSVDGGSHIVGGNASWFAFPSGEPTAEYHVGEVLEVGLNSIELGTCYSGVGVAGGRLGLYSCLGLGISSIDYWGPRGRLALSWSGRTGVEYNLSPQLSLFAEAYYLGTDAEEHAEGGPTLLRTVSSGMPSGSAGVFPVLSAGYFGGIAGVRCTLSSGF
>CP015994.2|ASI47985.1|1021668_1022601_+|P44/Msp2-family-outer-membrane-protein
MKKVYGLVCAALSLLFTPCGSFASPRPMDFSRGEGASGFFASVQYKLAVPRFGGLAMEDNGKPLSAFAMKEKQQGGDAAAAGAAAAAAPAKGLDLASVDSFEGKYSPEYLKSARAGSVSVGYSAGNVRLEAEGMYQNFLVDTRKYKDNPERAYRFAVSAPDENSTVVATRPKGPYHVTVENKEVTLASLMANLCYDLLPESSQISPSACVGGGGSLVRLLGVTGIRWAYQAKVGVQYFASRKAALFAYAYASRVHPEKFTNISAVHHVEEKPTDGGGAQTTGGKWPSLLYPQASLGLDYLGFECGIRLVL
>CP015994.2|ASI47984.1|1020668_1021238_+|transcriptional-regulator
MFMTSRTQNQSSIPIIVEGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEIKDLISKLQNDLRPITDAGDATDATLREGDESSLEEFGHSYNDGKEVLMLVRAYRRIKSDKMRGAIHTLVKVMCAEQQRDDYEHSDADAELGYEHDSEFNAGEPR
>CP015994.2|ASI48273.1|1019999_1020437_-|nucleoside-diphosphate-kinase
MFEKTLSILKPDVVERGIIGRVISYIEAAGLRIVAQRMCALSHEQAEAFYAVHKTRPFFPSLVGFMTSGPVVVQVLVGESAVKTYRDIMGATNPREAAPGTIRGDLAESIDANCVHGSDSLENAEREIKFFFQECEIMNSISNGK
>CP015994.2|ASI47983.1|1018593_1019847_+|poly(A)-polymerase
MLSKLVADPGVVRIVEAIEGSRGDARLVGGCVRDSVLGRDTTDIDLATDLVPATVIQALGSAGIKTIPTGIKHGTVTAVVAGVPYEITTLRRDLECDGRHAAVAFTNSWMEDASRRDFTFNALYCDKGGKIYDYFSGMQDLENRTVVFIGDAEARINEDFLRILRVFRFHASICDKSPLSDEIIFLCNKYAGSIAKLSRERVRSEFFKLLACTNCTSTLEIMEECGVLRQVVPYPVQISRLSCAHLVGRAPITKLAAILKGCAHTDTTGTVEELETLLRLSRKEKKLLETLLTTNLPLPLSTTEQQKYLNDLGTDVYRDLIIVSFLNRETLPESTFLEHLEYTKQFAPLALPVSGKDLAKLGYKEGKLLGHTLKRLKEAWECNPQGVTRNHLLLLAKQLLEAQQEANCSHINPRGKR
>CP015994.2|ASI47982.1|1016368_1018129_+|single-stranded-DNA-specific-exonuclease-RecJ
MQDVIEATDAVLEYVGVGGATWRVHDVPCRDVTTIMQRFGLCEVVARVLATRGIPIEEMENFLFPTLKLLLPDPFHLLDMDKAVARIHDAIRNGESIAIFGDYDVDGATSSAMLCRYLRGLEVRTKIYIPDRIEEGYGPNSAAMLKLREEGYSLCITVDCGTLAYEPILAAQSVNLDVIVVDHHIGINTLPKAVAVVNPNRLDESSEHTYLSAVGTSFLLLVALQKTLREAGLFARRSEPDLMNYLDLVALGTVCDVMPMIKLNRAMVRHGLKVISARSNVGLRVLGDAIGIEEKVSVYHLGFSIGPHINAGGRVGNASLGARLLSSDDENECERISSVLLSLNAERKELEKRSLEEALHQAERLVAAGNNVIMVAGDWHVGVIGIVAGRLKERFHLPSIVVSLSGNLGKASARSVSGIDIGAAVLAAKLEQLIPEGGGHAMAAGFSVCADKFEALYSFFLDRFKHSNIQKVSYACGILTAGAVNFPLWRELQMLEPFGPGNPEPRFILKNVEVRKPEVMGGSHVRCLISGDNVLVKGVCFKCIGTELGTTLLQRGRYVHLFGKISVNQWRGNEYVQFIIDDAALP
>CP015994.2|ASI47981.1|1014791_1016228_+|isocitrate-dehydrogenase
MSVPVTVAYGDGVGPEIMEAVLFVLKEARADVSIETVDIGHSQYKKEWPSGIAPSAWESISRTRLLLKAPTMTPQGGGHKSLNVALRQKLGLYVNVRPCVSYFPVVGTKHPNLDVVIIRENEEDTYSGVEHKLSEDTHECVKISTRSTSEKICAYAFNYARAHNRKKVTCFAKDNIMKMTDGILHSSFDKVAKGYPDIEANYYIVDVGMAKIASNPEDFDVVVTTNLYGDIVSDIVSLSSGSIGLTGSANIGDYYAMFEAVHGSAPDIAGQNVANPSGLLNAAVQMLVHIGQLDRAGVIRNAFLKTLEDGVHTADIYNEKTSLRKASTMEFAQAIVGNLGATPQRLKGLSLGKEAPSTGSPGYVSSNPRRVLVGVDVTVHWDKGTDIKELVGSLSGLSSELKLQLVYAKGLELWPKAPYSYTYVDLVSCRFYAEGKEEEGVDGREVGNLLLKMENAGIDTVKMVKLYLYDGGQGFFTP
>CP015994.2|ASI47990.1|1027185_1027494_+|hypothetical-protein
MPSFTGVLFLAVFGITLYVLLTYAVNQFTAWVGKRNRSLREKSGASWGSASPTFKRTSSAKPPQRQFSPYMEHGATAVLPKSVIGVDAVSQVFVSHDKGRGR
>CP015994.2|ASI47991.1|1027507_1029022_-|cation:proton-antiporter
MICALKEHLVILQVIIPLLSAIVCSLLRNKVTWVQAISCGAVALSFFTALALFVQISNSGPVVYQVGGWGPPYGIELRVDLLSATMLLLVGFIGIMSVIYGVYPSRRELPANMVPRFYAAFLLAFGGMLGILVSHDVFNVYVFLEVASISSYVLVAVGNDKRAVSSAFEYLIMGTVGATFYLIGIGFLYAATGTLNMGDMFTILQDIPVNRAVQAGVLCVILGLVVKAALFPFHGWMIKAYSTSPAFVAVFLSGTATKVMVYLIIRVVHNVFGPRLVFTELPFGTALLTLAAIATALTSVIAALSRDMRDVLAYSSASNIGCIILAVCINTYSGLAAAVAYMVNHSIVKSALFMVSGGIAYHFDKRKVSSKYLSLSKALPHVTSAFVLLALSLVGMPPTIGFVAKWHMLSSFMDARAFTGLVVLSVGSVCSVIYTWRVVEHLYFSSRVVENCANDIALKTPRAMTLCIWIMAFFGFIAGAYPLPLTSVSEQIAADLFFHPNNPL
>CP015994.2|ASI47992.1|1029237_1031955_-|hypothetical-protein
MGDAFGIPMKFLGRLCCCVLLLFAALVFVPYLIDWNAHYGEYVFKQLGAATGSSGAVVKAIGNIEGRLLLPRLTVRNLYVECSEDAAGCAGTLSVDRLELSLDPLSMLMGAPKVRTISLYGLRTSVGGVTGMVGSQTKNGLGQVQIFDSVIVMGGAVGASASVYNAIHVKSATVRSDSNKLLSDAVLKIGGTKYLLSSKLERGAAGSAVRVELNSPNTSMILVGNGAAQDLFDDFDAKLEIKTGNLVELAQTVAVVTNYRVLSSVASTEEMALSASIKAAKGSGFEVKNLSMQSKNISGSLELACTHAPFCTASLNFSLVDLDALFPEGLGTEQDAYYADFQSSERFSLVPSWLDATVGLDVKEINYRGGVSRNLVAVASVRQGRIAVDRLLLDLPGKNNHLSVSGVTSEDASSIVPRFVGTLSAQGDDADTIVSWLLPLRADAHRTQGKKFALTGSLYVAPRVFSLLGARMYAGNTRAYGNVKYKYGKRGGEVIGDVTVSNFSVGGYRFAENFDVKHDVMDFTWLRSVSCPVKLAVKLQDFAVSSGLVKELSFLANLSQHKVSIEKISMRAVDGYDGLSDLEGRASVALSSRGMRPKVFVSLKSARYSDAFLRLPKFVEQVAEAPTNAASSSHRGEKSDKFLWSSRPIDLASFEGLDGSIEIHVKELFFGGRVFSDFTWLSTLKEGVMSMDKLHFTQGKKGVVDISGNIGMGEVSSLSLVVSASDVSIGAVDPKSDQSKGGAKVSGHVSISGSIQTQGRSMLELANALKGKIKFAARGLDIGGVDLNGFIEDLFMAESKSEIASLARVHLYRGSTLFETLDGESQIDRGSLTSSLQFKIGNAAGSASVNFSVPQLAVIALFRFFFIPPESESPVHMDMHLQGYVWQPNPTFDIDSLYEIVRNSR
>CP015994.2|ASI47993.1|1032143_1034396_-|NADP-dependent-malic-enzyme
MGDFSERDREALEFHCKRRPGKVSLLPTKPLMTQGDLSLAYSPGVAAPCLRIASDPDTVYDYTARGNYVAVISNGTAVLGLGNIGPLASKPVMEGKAVLFKRFADIDAVDIEVDTEDVEEFINAVKHLGLSWGGINLEDIRAPECFVIEKRLGELMDIPVFHDDQHGTAIITLAGIINALDITGRNLKNVKIVVNGAGAAGIACVEMLKFVGIPNDSIVLCDQHGVMHKGRQLGMNEWKLKHTIETKERDLKDAMKGADIFIGLSVRDVVSKEMLLSMNKNPIIFALANPYPEVNPELAREVRPDAIIATGRSDYSNQINNVMGFPYIFRGALDVRAKSVNNEMKLAAAEALAMLAREVVSDEVLEAYGGRGMGYGKDYIIPTPFDPRLLSVVSPAVAKAAINSGVARRKIDDWDRYALELNSRISPTSNILNLMYGSVKSSPQRVIFPEGEEVRVIKAALQWHGQGYGTPILVGRVDKIKESLDLIGVDSLKDITIANAAISSRNDVYIDYLYSRLQRMGRLHRSCVRDVKTDRNVFAACMLACGDGDTLVTGITRGYSESLSDIRKVIDARGEVFGLSVVVMEERTLFIADTAINELPTAQQLADIAIKSAAAARRMGHEPRVAFVSFSNFGSHSQKESDRVRQCMDIVASRNVDFEYDGEMSVDVALKPESLSLYPFCKLSKPANVLIMPSLYSASISSKLLREVGGTTVVGPILMGMEKPVQIVQMTASVSEILNLAVLATLSHPI
>CP015994.2|ASI47994.1|1034646_1035321_+|ABC-transporter
MTVMLEIIDVSKYYGRNNSTCVLSNVNLKIKRGEFVALIGSSGSGKSTLLHIASLLEAPTSGIVVVDGTVCTPASDRTRTIMRRKCMGFVYQFHHLLQEFSVLENVMLPQRILGHSRSVAEDAAIAILAEVGLQDKAECQISELSGGERQRVAVARGIVNSPAIMLADEPTGSLDPQMSRAVFSVLHKHVKAKNLAGLVATHDHNLAKKTDRVLSLNGGMLTEL
>CP015994.2|ASI47995.1|1035480_1036419_-|recombinase-XerD
MDDKRCLDVFLESLLSGRCVSPNTSSSYRSDLEDLAEFLGRRNLRMVDASAADLRKYIRSLNSRGYSPATVSRRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLDVGEVDKLLRTAGADLSVEGRRTAAIVNVLYSSGVRISELINLGFYDIESMLREQHSDVGHLVIKGKAGRERLVLLNEVAIASVVAYLAVRKRFIVGRKSESKWLFPGAKFDQCISRQRVGQLLKALAIAAGVDPKRVSPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALKTFHPFATNPPK
>CP015994.2|ASI47996.1|1036837_1037146_+|preprotein-translocase-subunit-SecG
MFLTAAQVFLAFLLVLLVLLQSPESDTLGGFGGPQCNLGSMFGKSSSSSFIAKLTAVVAAAFIVNTVLLVGTNARRVREVSVVSKTGAVPGQESNGSEVPFE
>CP015994.2|ASI47997.1|1037158_1038841_+|CTP-synthetase
MSIRDRCSARFIFVTGGVVSSLGKGLAAASIGALLQARGFRVRLRKLDPYLNVDPGTMSPAQHGEVFVTDDGGETDLDLGNYERFTGVNTTREDNVTAGRIYQQLLVKERRGDYLGHTVQVIPHVTDLIISFILSNDNGADFIICEIGGTVGDIESQPFLESIRQVSYRLSKNFTIFVHLTLVPCVGSAGELKTKPTQHSVKELSSLGIQPDIILYRSAAPLPQYQSAKIANFCNVSADNVIPALDVESMYKLPVVYHAHKLDTQILNHFGMSAPDPDLTKWENVLRMINNARNVVTVAIIGKYTKFLDAYTSLTEALDHAGMHSGIKVQVKWVDSRLPVRESDLHDVDGVLVPGGFGDDGVDGKVLAIGYARTNGIPMLGICMGMQLAAIEFALNVAKLEDANSTEFDQTCKNPVVVELPWLQKGEGEYLLGGSMRLGSYTCHLSTDSKTASIYSSTVINERCRHRYCINPRYKNVLEEHGLSFTGTSDPHGLMEVLELQSHPWFLGVQFHPEFKSSPFAPHPLFTSFVQSILQIKQCGLMRRSASAATTLFPGSSVVS
>CP015994.2|ASI47998.1|1039116_1040226_-|riboflavin-biosynthesis-protein-RibD
MFDDERFMSIALRLARRGLGNTYPNPTVGCVVTNSTGSIVGRGWTAMGGRPHAEVVALRRAGEAAAGSTVYVTLEPCCHHGQTGPCTTALISAGVRRVVIAALDPDKRVSGKGARFLADSGVEVKLGVLQQQAEELNVGFFYSKTKKRPFITVKLATTLDGKISPPSDGDRWITNELTRRWVHKQRTMHDGIMVGSNTVIVDDPMLDCRLPGLEKCSPIRIVIDRSGKLCSHHKVVATSDVVPTYIATDNDNHEALRAVRYLRIRERGDFLVETMNTLAEELGITRLFVEGGGVLVTELLKRRLVDQFMWCRANKISGSQGVESILNLDGLPAGHCHFSRVKTLTFMEDTVDIFQVLFASECSSAAAPA
>CP015994.2|ASI47999.1|1040306_1040945_+|nucleotide-exchange-factor-GrpE
MAEERHVDPKQQQEGVAPAGSGDGAPPKGAPDPTAGRKQGPAGKFAAGVGGKVQQRVAADSLELEKLRTEVEHLRNQLRLAVADSKNLKRLVQKEVEEARTLSISEFVRDLIASCDNLEASLKNLSDDDNVHAGVKMTWDSLISTLGGHGVSRVSPLGEQFDPRFHKAVTQAVDDSKPAGTVLEVIQAGYIIQTKVLRPALVIVSKTSSEQG

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	840153 : 849601	7	uncultured_virus(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>CP015994|840153:849601|DBSCAN-SWA
TTTACTGCATTTCTGGCTCAACATCGCTTTCCACACCTAGCTCACGCAGCTTTATAGAAAGTTCATCCGCAACCAATGCCACCAACTCTGGATCTTCCCCCTCAACCACACACCTTATAAGCCGCTCAGTTCCGGACCTTCTGAATATTACCCTACCATTCACTCTTTCCAGCGCTTTTTCTACATCTGACAAAGTAGGCCCGATCAGCTGCGCTATGCTATCAAACCCCATGCTATAGGGTATGTCCCTATGCACCCTGGGCATCGGCACAAAATCACTAAATATTGAGCTCGCGCTTTTATTTTCCAAAAGCATTATTGACAAAATTTGTAATGCAGCAACCAGGCTGTCGCTAGTTGTGGAATGCTCCCACAGAATAATGTGCCCAGATTTCTCTCCTCCGACACTACATGAGTGTTGTCGCATTGTATCCACAAGGTGACGATCACCCACTTCTGACCTGTGTAGCCTCACACCTAACTCTCGAGCGTAGCGATCCATTGACTTACTCGACATAGTAGTAACTGCCGCGTCGGTAATAGACTTCGTCACACGTAGGTGCCTCATTATTGACGCTATTACCTGGTCTCCATCAACAAGCCTGCCTTTTTCATCACACACAACAACACGATCGGCGTCTCCGTCCAGGGCAATGCCAATATCCGCCCTCTCTTCCAATACTTTTTGTACCATACCCTCAGGATGTAAGGACCCACAATTGTGATTTATATTTAGCCCATCAGGCTTGTTGCCAATGACAACAACATCGGCCCCCAACTCCCAGAATACTTCGCCACCTATGTGGTATGCGGCCCCGTTCGCGCAATCCACAACTATCTTCATGCCAGACAGCTTGAGCTTCTTGGGAAATGTGCCCTTCACAAATTCTATGTACCTTCCTACCGCGCCGGCTATCCTATACACCTTGCCCATGTCACGAACCTGGGCGAGGTTGCCGCTCAGTTCGGCACGCACGTTAGACTCAAGCATTTCTTCCAACTCTAGAGGTATTTTTATTCCCTCGCCGTCAAATATCTTTACTCCATTATCCAAATACGAGTTGTGCGAGGCAGAAATCACCACGCCCATGCTGGCACGCAAGTTTCTGACCAGCGTGGCTATAGCCGCAGTAGGCATTGGCCCTAATAGGCCAACGTTAACGCCCATGGCAACCAGCCCAGAGACCAACGCAGATTCCACCATATATCCCGAAATTCTAGTATCCTTGCCCACAACCACTCGCGCGCCAACCTTTTTTCTGGCCTCAAGCCCTATGGCCATCCCAAGCCTAAGTACGGTTATCGGATCCATGGGGTATGCATTAGCCCTACCTCTAACTCCATCTGTACCGAAAATATTCACGACAACACCACACAGTTGAGTGTATACATATAAAACCTAGTTGCTGAAGATAGCGTCGAACTTTTGCTGCAGCACAGCATCAAACTCTTCAAAGGATACGGCAACTCCCAAATCCTGAAGCGACGTAACGCTAGAACCGGCCATGCCGCAGGGAACTATGCCCAAGTAGTTATTGAGATCAGTGCTGATGTTGACTGAAAACCCGTGATAAGTCACCCAACGACTGATCGCTATGCCAAAAGCGGCTATTTTCTTCTCTTGCCCATTGCACTGCACCCATACGCCCGTGTTGTTGCTATCAAAATGGCTATCAATGGCAAACTCCGCCAGTGTATTGACTACCCACAGCCCAAGGTTACGCACGTACAACCTTACGTCACGCTTGTCCCTTCGCCCTAAATGCAGCATCACATAAACCACTCGCTGCCCTGGGCCATGGTACGAATATCTTCCTCCACGGGTGACGCGTATAACCGGAAACGCGCTCTCAGAAAGCAACTCCTCATCCTTCGCGCTAGTACCAGCAGTATACACCGAGGGGTGCTCCAACAGCCAGACCATCTCCGATTCTATACCCTTCAAAATACCGCCAACTCTGGAGGTCATAAAGTCCAAAGCAGTCTTATAGTCGACCATTCCGTCAGAAACGCGCCACTCCACAGGAAAACCAAGCAAACTCACAGAACACACGCATGGGGGTGCGACTCTACAACACAAAATGGCGCAAGTCAACCCCCTGCAGACATGGGACAATATATCCGAAGGTAGGTTACAACAGTCCGTTAGTTTTGAAGCTATAGTGCCTTTTTGGCGTGACAATCACGTGGTCCACCAGCACTATGTTCATGCTACAGCAGGCTTCTTGTAACCTGCCAGTAACGTGTATATCTGCCTTGGATGGCTTTGGATCACCGCTTGGGTGATTATGCGACACCACAATGTACGAGGCATCATGCAAAAGTGACTTCTTTATAACCTCGCGCACGTATAGAGGGGTCTCGTCTATAGTGCCAGTGTTTTGTATTTCATCCGCAATAACACGATATTTCTTATTTAGGTACAGAACACACAGGTTTTCCACATTAGAGTTTCCTATTTTGGCTCGCAAATAATCTAGCAATTTCTGCCACTCATTCACCACCACACCATATTTCATTTCGCCTTTTAGCGCGCGTATTAGCGCTTCTCGCACGCACAATATTGCAGCAACTGAGGATTCGCCAACTCCTTTCACTCTCTTCAGCTTAGCAACATCTGCGTATATCACCTTGGAAAGGGTACCAAACTCTGCTATGAGCTGCTTTGCAATGGGTTTTAGATCCACACGATTACGAGCAGAGCATAAAATCAATTCCAGAATTTCATAGTCGAGCAATCCGATCCCCTCACCAGATATCAGCCTCTCTCTGAGCCTTGCTCTATGACCAGATTTAAGCTGCTCGCATTTCGAATTATCCCGCATATTATCGCCTTATAGTTAAGAAATAAACCAGAGCCCTTTAGGGAAAATCCTACGCATTGTGGCGGCGTATGCAAGTCGACATGTGCCTCAAGCTAGCTAAAAGTTTAAAAAAAAATTACCATTTGTGTTCCACCACTCTTGAAATTCAATTTTTTGGCTCCTATATAACCGCCAGAGTTATCGTGACGCGGTCAGTCACAGAAAAATGTTCGGAGGGTAGTTATGAAGCTAGCTATGTTGCATGATAATGTGTTGGTTGAGGCTTTGGAGGATAGCGGAGGGAATTCTCCCATACAGCTTCCGGATTCGGCTAAGAAGAAGCCGACCAGGGGCAAGGTTATGTCTGTGGGTCCTGGCGCTTCAAACAGTGATGGCAAAGTCACACCTATGTCAGTCAAGGTGGGCGATGTGGTCTACTATCGCCAGTGGGCTGGAAACGAAGTAGAGCTCGAAGGAAAGAAGCTCATAGTCATGAAAGAAAGCGACATAATCGCTAAGGAGGCGTAGTCCGACGCGCAGGTTTGGTTTGTTAAGTTTGATTTAGGAGGTTATAAATGGCAAATGTTGTTGTTACGGGCGAGGCATTAGATAAATCTATAAGGGAGGTAGTGCGCATCCTGGAAGACGCTGTTGGTTGCACTGCCGGCCCAAAGGGGCTCACCGTCGCTATTAGCAAGCCTTACGGGTCCCCGGAGATCACCAAGGATGGATATAAGGTCATGAAAAGCATAAAGCCTGAAGAGCCCTTGGCGGTCGCTATCGCGAACATAATTACTCAGAGTGCGTCTCAGTGCAACGATAAGGTTGGTGACGGAACTACCACGTGCTCCATACTGACTGCAAAAGTTATCGAGGAAGTGTCCAAGGCCAAGGCAGCCGGCGCTGATATAATAAGCATAAAAAACGGGATCTTAAAAGCCAAGGAGGCTGTGCTTACAGCTTTGCTATCAATGAAGCGTGAAGTGGCATCTGAGGACGAAATTGCACAGGTTGCTACTATATCTGCCAACGGGGATAAAAACATAGGTAGCAAAATAGCGCAATGCGTCAGGGAAGTTGGCAAAGATGGGGTAATAACGGTCGAGGAGAGCAAGGGGTTTAAGGACCTCGAGGTCGAAAGGACTGACGGTATGCAGTTTGACCGCGGGTACCTATCCCCTTACTTCGTAACTAACGCTGAGAAGATGTTGGTAGAGTTCGAGAATCCGTACATATTCCTCACTGAAAAGAAGATCAACCTGGTACAAAACATACTACCAGTACTGGAAAATGTTGCTAGGTCAGGAAGGCCATTGCTGATCATCGCGGAAGACGTAGAGGGTGAGGCGCTGAGTACACTGGTGCTTAACAAGCTCCGCGGGGGCCTGCAGGTTGCGGCTGTTAAAGCACCCGGTTTCGGCGACAGAAGGAAAGACATGCTCGGTGATATTGCCGTAATAGCTGGTGCAAAGTATGTAGTAAACGACGAGCTTGCGGTAAAGGTTGAGGACATAACTCTGGAAGATCTCGGTACTGCCAAGACTGTGCGCATTACTAAGGATACAACCACAATTATAGGAAGTGTCGACAGCAACGCTGACAGTATTACCAGCAGGATTAGCCAGATTAAGTCCCAGATTGAGGTTTCTTCTTCTGACTACGACAAGGAAAAACTGAAGGAGAGGCTGGCTAAGCTCTCAGGCGGGGTTGCCGTACTTAAGGTTGGCGGCTCTAGCGAAGTTGAGGTCAAGGAGCGTAAGGATAGAGTTGAAGATGCTCTGCATGCAACTAGGGCCGCGGTCGAGGAAGGCGTGGTACCCGGCGGTGGGGCTGCCTTGCTATACACGCTCGCATCTCTGGACGGCGTAAAAGGGAAGAATGATGATGAGCAGCTGGGTGTTAACATAATAAAGCGCGCTGTTTGTGCTCCAATAAAGAGGATCATCAAAAATTCCGGATCCGAAGAGGCTCCATGTGTTATCCAGCACTTGCTGAAGCAGAACGACAAAGAGCTAATCTTCAATGTTGACACCATGAACTACGCTAACGCGTTCGCTTCCGGGGTTATGGACCCTCTAAAGGTGGTGCGCATCGCGTTTGACCTGGCTGTGTCACTTGCAGCTGTATTCATGACTTTAAACGCAGTGGTTGTGGACGTCCCAAACAAAGAAGATGCAGCAGGCGGAGCTGCCGGAGGTATGGGAGGTATGGGAGGCATGGGAGGATTCTAACCCAACCCCTTAACACACATCACACATTCGGGAAGAGCGGGTTATAGCGGCGTACCGCTGGGAGGCCCGCTCTTCTCCTTTCTCCTGACAAAGCTTGGGTGGAGTAGTGTTTTGACGTGCAGATTGCCTGCGGTGGACACTCGCTACTTGAGCATCGCTGCATATGTGCAAAAATGCTGGCAGCAACGTTACGTATCGGCACTTGGTTGATACCTAGTGACCACTACCTACGAGAGGCTGCGGTCACAAGCACAAAAGTGGTGCATTCGCTTAACGCGGCCACTTGGTGTAAGCGTAAAGGCCTAGGCATGGGTGCGTTGCTTTGCCTCACATTTCCTTTCTTGCTCCATATGTGGAAGTACGCCGGTAGCACCCGACTTGCGCTGCACTCGCTCTGCCGTTGCACCCTGACATGTGGTATGATAAGGGGGATTGGTACGCAGCCAACACCGTCAGCGTATAATCAGCGCTGGATTAATAGCCTAGTTGACCACCACCTACAGAGGCTGCAGTCAGGCGCAAAAACAGTGCATCCGGCCTAACGCGGCCACATGGTGTACACACGGCATAGAGGAAAGTTTAGGCATGGATACGGCTTTTCCGATTCTCCCTCATAAAACATATTCCCTGCGTGAGGCTAATCCTATACGGGTACCGCTCTGGCGCCCGTTCCGTTCGTGATATTGTTGACACGCGATCCTTCCCGCAAGGAAGCGCCCATCCTCGTAACCTCCCTTCCTGCATGCACAAACTCTCAGCCTAGTGATGGCCACGAGCTGATTATTCACCGCCTCATGCACACAACACCCCCGCAGTCAGCAGCATTGGCATCGCGCGGGGGTGTTATTCTTCCTCAATGTTTTGGGTCAGCTCGTATATTTGGCCAGTAACGCAACATTCTTCGGACGACAATTCCACAAACTTGTCTGTGACGCTATCAGGTGCCAGCAATTTTGACTGCTCCTGCGCTGAAAAGATCTGAGAGTAAATGTTACTGTCGATACTGCATGGGTACACAATGTTTGCACACAGCTTGCTGTGCTTGGTCTCCACTGCATACACCTGCACCATGGCTTCTAGAGCCACTTTGCTTGCGGCATACGGCGCAAAATACGAGTAATTCAGTAGTGACCTTGCGGCTTCGGACGTCACAAACACTGCCCTGCCAGCCGGGGCACTTTTGAGAAGGGCGTCAAAGTGTTTGATGAGATACCAGTTTGCAAAGAGGTTCACATGCATCACTTCCTTCCAAACCGCAGGTTCATATTCCTGCACGGGACCAAGACCTCCGAGCAATGCAGCCACAGAGACTAAAATATCGAGGCAGCCAAACTTGTTCTTCACGGAGAGGGCTAAGTTATCCACGCTTTCATAATCTTGTATATCTATAGGAGCAAGTATAGCCTCACCACCAGACTCCTGTATCTCGTCACACAGTGTTTTCAGCTTGCCCATGTTCCTAGCAACCAAAACTACCCTGGCGCCCTCCTTGGCAAACCTCCTGGCTACAGCTGCCCCGATTCCACCCGAGGCACCAGTAATTAACGCCACTTTACCCCGCAAGCGATCAGCCATACCTAACTTCAAAACCCCTACAAATGCATGAGTGGGGATGGTAAGCCCTATTCAAGCGCTTGACAAGAAATATAGTGCACCTCTACACAGCTGTGAACACAGTAATTAGAGGTAAAATTCTTCATTGATAGGCCCCTTTGCATTTTTTTCTGAAGCTCCATACAAATTTAGTGGAACATGACATATATCTGTGTACAGAAAAGTTAGGCACGTAACCATCATGGATCTGAACAAGTTCACCGAGAAGGCAAAGGGTTTCATAACGAATGCGCAAATGTTTGCGGTATCATCCGGGCACCAGTCTTTGCTTCCGGAGCATCTGCTAAATGTGATGCTGGAGGAGGAAAATGACATGGTCGGCAACCTAATATCCTCATGCGGAGTTGATGTGAGCAAGATTACCAGCACTCTGTCAAATATGCTGAGTAAATTGCCGGTAGTAAGTGGTTCAGGAAGCGGACATCTGAGCCTCTCCAGAGAGATGGCAAAAATTTTAGACGAAGCGGCGAGCCTGGCAAAGCGCAACCAAGATGCGTACGTAACTGCGGAGCGGTTACTGCAGGCCCTTGTTGTCGTGGAAAGCAGCGTGTCGCGAATGCTGCTGAATGAGGGGGTAACAACGCAGAAGTTGAACACCCTGATCGAAAAAATGCGCGACGGAGTGAGGGCTGAAAGCGAAAATGCAGAGCAGCAATTTGACGCACTGAGGAAGTATACCCAAGATCTGACTGAACTGGCCGCAAAAGGCAAGATGGACCCGGTAATAGGCAGGAGTGACGAAACTAGGCGGTTGATTCAAGTCTTGTCTCGCAGAACTAAAAACAACCCAGCATTGATCGGAGAACCCGGAGTGGGAAAAAGTGCAATCGTAGAGGGACTTGTTCAGGCCATGGTTTCCGGTAACGTTCCCATGTGGCTGCGTGACGCAAAGGTGCTCGCCTTAGATTTGGCTGCGCTGATAGCCGGAACAAAATATAGAGGGGAGTTCGAGGAGAGGCTGAAGGCTGTAATAACAAAAATAGTCGCCTCAAACGGCAAAATCATATTGTTCATTGATGAGCTGCACATGCTAGTAGGAGCGGGGGCCACAGGTGGCTCTATGGATGCATCTAACATACTAAAGCCCGTTCTTGCCAGAGGGGAAATACGCTGTATTGGCGCAACCACGCTGGATGAGTATCGTGAACATATAGAGAAAGACCCCGCACTCGCGCGAAGATTTCAGCCCGTATTCGTTGCGGAGCCAACTACCGGTGATACAATTTCCATACTAAGAGGCCTCAAAGAAAAGTACGAGCTCCATCACGGTATAAGAATCACCGACAGCGCAATAGTTGCTGCCGCGACACTATCTAACCGTTACATTACCGATAGGTTCCTACCAGACAAGGCTATAGATTTGATAGATGAGGCCGCAAGTCGTGCAAGAATCGAAATAGACAGCAAACCTGAAATTATAGACAGCATAGACCGTAGGATAATGCAACTCAAGATAGAGTCAGAAGTCTTGAAAAACGAAAAGAACGAGGCATCTCAGCAGCGTCTTGCGGTCATTAATGAGGAGCTCAACGAGCTGAGTTCCGAGGCTGCAGATTTGAACAGCAAATGGCAGGCTGAAAAGGTCAAAATCTCAAAAATGCAAGAACTAACTGAGAAGCTCGACGGGGCGCGTATCGAGCTGGAACAGGCTCAAAGATCTGGCAACCTGTCACGAGCTGGGGAGCTAATGTATGGGGTGATACCATCGCTAGAGCAAGAATTGAAACAGCATGAAGAAGTAGCCGGTACCATGCTGAGGAAGGAAATAGGAGTGAACGACATTGCAGCAATAGTTTCGCGGTGGACGGGTATTCCCGTGGAAAATGTGATGAATAGCGAAAAAGAAAAGCTGCTCAATATGGAGAGAGAAATAGGCAAAAGCGTCATAGGACAGGAAAGCGCTGTTAGGGCAGTGAGCAACGCAGTTAGGAGATCGAGAGCGGGAGTGCAAGATGCACAGAAACCCATGGGGTCATTTTTATTCCTAGGCCCGACAGGCGTCGGGAAGACCGAGCTCACCAAGGCGCTGAGCGAGTTTTTGTTTGATTCCAGATCTGCACTGCTGCGATTTGATATGTCTGAGTTCATGGAAAAGCACTCGGTCGCAAAGCTTATAGGCGCGCCACCAGGATATGTGGGGTACGAGCAGGGTGGAATGCTGACAGAAGCCGTGAGGAGAAGACCGTATCAGGTAGTGCTGTTTGACGAGATAGAGAAGGCGCATCCGGACATCTTTAACATATTGTTGCAAGTCCTCGATGAGGGCAGGCTAACAGACAGCAAGGGCAAGTTGGTAGACTTCAAAAACACAATACTGGTGTTAACATCAAACATTGGACAGGAAATTCTAGTACATGGCTCCACAGGCGAAAGCGCGGAAGTAACGCGCCAGAAGGTGCTTGAGATGCTAAACATGCATTTCCGCCCAGAGTTTCTGAACAGGCTTGACGATGTTATCATATTCAATAGGCTAGCCAAAGAGCACATAGGGCGTATAGTAGATGTTCAGATGTCTTACCTACAGAAAATAATCAGTGACAAGGGCCTCACCATAACTCTTCTGCCGGAGGCGAAATCCTGGATAGCAGAGCGCGGTTATGATGTAACCTACGGGGCACGCCCTCTCAAGCGCCTAATACAACACAACATACAAGACCAGCTGGCAGAGTTGCTGCTCTCTGGTAAGGTAAGTGCCGGAGATAACTTGGAGGGATTTGTGTTGGATGGAGCGCTGGCAATACGTAGGAAGGAGACTCCAGCCACACATACGGAATCCGGAGCAAACAGTTACAACCCGTAG

Protein sequences of DBSCAN-SWA_1

>CP015994|840153:849601|846982_849601_+|ASI48246.1|DBSCAN-SWA
MDLNKFTEKAKGFITNAQMFAVSSGHQSLLPEHLLNVMLEEENDMVGNLISSCGVDVSKITSTLSNMLSKLPVVSGSGSGHLSLSREMAKILDEAASLAKRNQDAYVTAERLLQALVVVESSVSRMLLNEGVTTQKLNTLIEKMRDGVRAESENAEQQFDALRKYTQDLTELAAKGKMDPVIGRSDETRRLIQVLSRRTKNNPALIGEPGVGKSAIVEGLVQAMVSGNVPMWLRDAKVLALDLAALIAGTKYRGEFEERLKAVITKIVASNGKIILFIDELHMLVGAGATGGSMDASNILKPVLARGEIRCIGATTLDEYREHIEKDPALARRFQPVFVAEPTTGDTISILRGLKEKYELHHGIRITDSAIVAAATLSNRYITDRFLPDKAIDLIDEAASRARIEIDSKPEIIDSIDRRIMQLKIESEVLKNEKNEASQQRLAVINEELNELSSEAADLNSKWQAEKVKISKMQELTEKLDGARIELEQAQRSGNLSRAGELMYGVIPSLEQELKQHEEVAGTMLRKEIGVNDIAAIVSRWTGIPVENVMNSEKEKLLNMEREIGKSVIGQESAVRAVSNAVRRSRAGVQDAQKPMGSFLFLGPTGVGKTELTKALSEFLFDSRSALLRFDMSEFMEKHSVAKLIGAPPGYVGYEQGGMLTEAVRRRPYQVVLFDEIEKAHPDIFNILLQVLDEGRLTDSKGKLVDFKNTILVLTSNIGQEILVHGSTGESAEVTRQKVLEMLNMHFRPEFLNRLDDVIIFNRLAKEHIGRIVDVQMSYLQKIISDKGLTITLLPEAKSWIAERGYDVTYGARPLKRLIQHNIQDQLAELLLSGKVSAGDNLEGFVLDGALAIRRKETPATHTESGANSYNP
>CP015994|840153:849601|840153_841515_-|ASI47865.1|DBSCAN-SWA
MNIFGTDGVRGRANAYPMDPITVLRLGMAIGLEARKKVGARVVVGKDTRISGYMVESALVSGLVAMGVNVGLLGPMPTAAIATLVRNLRASMGVVISASHNSYLDNGVKIFDGEGIKIPLELEEMLESNVRAELSGNLAQVRDMGKVYRIAGAVGRYIEFVKGTFPKKLKLSGMKIVVDCANGAAYHIGGEVFWELGADVVVIGNKPDGLNINHNCGSLHPEGMVQKVLEERADIGIALDGDADRVVVCDEKGRLVDGDQVIASIMRHLRVTKSITDAAVTTMSSKSMDRYARELGVRLHRSEVGDRHLVDTMRQHSCSVGGEKSGHIILWEHSTTSDSLVAALQILSIMLLENKSASSIFSDFVPMPRVHRDIPYSMGFDSIAQLIGPTLSDVEKALERVNGRVIFRRSGTERLIRCVVEGEDPELVALVADELSIKLRELGVESDVEPEMQ
>CP015994|840153:849601|843531_845187_+|ASI47868.1|DBSCAN-SWA
MANVVVTGEALDKSIREVVRILEDAVGCTAGPKGLTVAISKPYGSPEITKDGYKVMKSIKPEEPLAVAIANIITQSASQCNDKVGDGTTTCSILTAKVIEEVSKAKAAGADIISIKNGILKAKEAVLTALLSMKREVASEDEIAQVATISANGDKNIGSKIAQCVREVGKDGVITVEESKGFKDLEVERTDGMQFDRGYLSPYFVTNAEKMLVEFENPYIFLTEKKINLVQNILPVLENVARSGRPLLIIAEDVEGEALSTLVLNKLRGGLQVAAVKAPGFGDRRKDMLGDIAVIAGAKYVVNDELAVKVEDITLEDLGTAKTVRITKDTTTIIGSVDSNADSITSRISQIKSQIEVSSSDYDKEKLKERLAKLSGGVAVLKVGGSSEVEVKERKDRVEDALHATRAAVEEGVVPGGGAALLYTLASLDGVKGKNDDEQLGVNIIKRAVCAPIKRIIKNSGSEEAPCVIQHLLKQNDKELIFNVDTMNYANAFASGVMDPLKVVRIAFDLAVSLAAVFMTLNAVVVDVPNKEDAAGGAAGGMGGMGGMGGF
>CP015994|840153:849601|843199_843484_+|ASI47867.1|DBSCAN-SWA
MKLAMLHDNVLVEALEDSGGNSPIQLPDSAKKKPTRGKVMSVGPGASNSDGKVTPMSVKVGDVVYYRQWAGNEVELEGKKLIVMKESDIIAKEA
>CP015994|840153:849601|842284_842977_-|ASI47866.1|DBSCAN-SWA
MRDNSKCEQLKSGHRARLRERLISGEGIGLLDYEILELILCSARNRVDLKPIAKQLIAEFGTLSKVIYADVAKLKRVKGVGESSVAAILCVREALIRALKGEMKYGVVVNEWQKLLDYLRAKIGNSNVENLCVLYLNKKYRVIADEIQNTGTIDETPLYVREVIKKSLLHDASYIVVSHNHPSGDPKPSKADIHVTGRLQEACCSMNIVLVDHVIVTPKRHYSFKTNGLL
>CP015994|840153:849601|841551_842196_-|ASI48244.1|DBSCAN-SWA
MSLLGFPVEWRVSDGMVDYKTALDFMTSRVGGILKGIESEMVWLLEHPSVYTAGTSAKDEELLSESAFPVIRVTRGGRYSYHGPGQRVVYVMLHLGRRDKRDVRLYVRNLGLWVVNTLAEFAIDSHFDSNNTGVWVQCNGQEKKIAAFGIAISRWVTYHGFSVNISTDLNNYLGIVPCGMAGSSVTSLQDLGVAVSFEEFDAVLQQKFDAIFSN
>CP015994|840153:849601|846030_846762_-|ASI48245.1|DBSCAN-SWA
MADRLRGKVALITGASGGIGAAVARRFAKEGARVVLVARNMGKLKTLCDEIQESGGEAILAPIDIQDYESVDNLALSVKNKFGCLDILVSVAALLGGLGPVQEYEPAVWKEVMHVNLFANWYLIKHFDALLKSAPAGRAVFVTSEAARSLLNYSYFAPYAASKVALEAMVQVYAVETKHSKLCANIVYPCSIDSNIYSQIFSAQEQSKLLAPDSVTDKFVELSSEECCVTGQIYELTQNIEEE

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ASI47865.1|840153_841515_-	phosphoglucosamine mutase	A0A127AWJ1	Bacillus_phage	9.6e-12	24.3
ASI48244.1|841551_842196_-	lipoate-protein ligase B	NA	NA	NA	NA
ASI47866.1|842284_842977_-	hypothetical protein	A0A1B2LRS6	Wolbachia_phage	1.4e-38	38.6
ASI47867.1|843199_843484_+	co-chaperone GroES	A0A221S461	uncultured_virus	1.1e-07	33.7
ASI47868.1|843531_845187_+	chaperonin GroL	A0A219YK78	uncultured_virus	4.3e-131	50.0
ASI48245.1|846030_846762_-	oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	7.9e-05	23.3
ASI48246.1|846982_849601_+	ATP-dependent chaperone ClpB	A0A1C3S747	Escherichia_phage	3.3e-125	34.4