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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP020425 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 2 0
CP020426 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence 0 crisprs cas14k,c2c4_V-U1 0 0 2 0
CP020424 Clostridioides difficile strain FDAARGOS_267 chromosome, complete genome 9 crisprs DEDDh,csa3,cas14j,WYL,DinG,cas3,cas6,cas8b2,cas7,cas5,cas1,cas2,cas14k 1 28 5 0

Results visualization

1. CP020425
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 23832 30 Clostridioides_phage(57.14%) plate,head,tail,portal NA
DBSCAN-SWA_2 28919 : 44618 25 Clostridium_phage(52.94%) NA NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP020426
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 104 : 91744 120 Clostridium_phage(91.67%) tail,transposase,integrase,protease attL 63057:63076|attR 98401:98420
DBSCAN-SWA_2 102264 : 130524 29 Clostridium_phage(96.55%) tail NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP020424
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020424_1 374552-375699 Orphan I-A
17 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020424_2 549274-549765 TypeV I-A
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020424_3 660027-660976 Orphan I-A
14 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020424_4 1897714-1898137 Orphan I-A
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020424_5 2048565-2048644 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020424_6 2064038-2064126 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020424_7 3041318-3042060 Unclear I-A
11 spacers
cas2,cas1,cas3,cas5,cas7,cas8b2,cas6,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020424_12 3539206-3539767 Orphan I-A
8 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020424_13 3786440-3786926 Orphan NA
7 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP020424_6 6.1|2064065|35|CP020424|CRISPRCasFinder 2064065-2064099 35 CP020424.2 1040691-1040725 0 1.0
CP020424_6 6.1|2064065|35|CP020424|CRISPRCasFinder 2064065-2064099 35 CP020424.2 2046570-2046604 0 1.0
CP020424_6 6.1|2064065|35|CP020424|CRISPRCasFinder 2064065-2064099 35 CP020424.2 2163127-2163161 0 1.0
CP020424_6 6.1|2064065|35|CP020424|CRISPRCasFinder 2064065-2064099 35 CP020424.2 2177464-2177498 0 1.0
CP020424_6 6.1|2064065|35|CP020424|CRISPRCasFinder 2064065-2064099 35 CP020424.2 2478068-2478102 1 0.971

1. spacer 6.1|2064065|35|CP020424|CRISPRCasFinder matches to position: 1040691-1040725, mismatch: 0, identity: 1.0 

agcgccaacaaacaaacttcacatgcgttcagttt	CRISPR spacer
agcgccaacaaacaaacttcacatgcgttcagttt	Protospacer
***********************************

2. spacer 6.1|2064065|35|CP020424|CRISPRCasFinder matches to position: 2046570-2046604, mismatch: 0, identity: 1.0 

agcgccaacaaacaaacttcacatgcgttcagttt	CRISPR spacer
agcgccaacaaacaaacttcacatgcgttcagttt	Protospacer
***********************************

3. spacer 6.1|2064065|35|CP020424|CRISPRCasFinder matches to position: 2163127-2163161, mismatch: 0, identity: 1.0 

agcgccaacaaacaaacttcacatgcgttcagttt	CRISPR spacer
agcgccaacaaacaaacttcacatgcgttcagttt	Protospacer
***********************************

4. spacer 6.1|2064065|35|CP020424|CRISPRCasFinder matches to position: 2177464-2177498, mismatch: 0, identity: 1.0 

agcgccaacaaacaaacttcacatgcgttcagttt	CRISPR spacer
agcgccaacaaacaaacttcacatgcgttcagttt	Protospacer
***********************************

5. spacer 6.1|2064065|35|CP020424|CRISPRCasFinder matches to position: 2478068-2478102, mismatch: 1, identity: 0.971 

agcgccaacaaacaaacttcacatgcgttcagttt	CRISPR spacer
agcgctaacaaacaaacttcacatgcgttcagttt	Protospacer
*****.*****************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP020424_1 1.9|375110|37|CP020424|CRISPRCasFinder,CRT,PILER-CR 375110-375146 37 NC_028958 Clostridium phage phiCD146, complete genome 14871-14907 0 1.0
CP020424_2 2.3|549437|36|CP020424|CRISPRCasFinder,CRT,PILER-CR 549437-549472 36 NZ_CP029155 Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence 39008-39043 0 1.0
CP020424_5 5.1|2048591|28|CP020424|CRISPRCasFinder 2048591-2048618 28 NZ_CP033215 Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence 5105-5132 0 1.0
CP020424_7 7.3|3041478|36|CP020424|PILER-CR,CRISPRCasFinder,CRT 3041478-3041513 36 NC_028958 Clostridium phage phiCD146, complete genome 3353-3388 0 1.0
CP020424_12 12.1|3539235|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3539235-3539271 37 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 5974-6010 0 1.0
CP020424_12 12.1|3539235|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3539235-3539271 37 NZ_CP029156 Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence 40297-40333 0 1.0
CP020424_12 12.1|3539235|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3539235-3539271 37 NZ_CP029153 Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence 34341-34377 0 1.0
CP020424_12 12.7|3539634|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3539634-3539670 37 LN680005 Clostridium phage phiCDHM4 gp01 gene for putative capsid protein 620-656 0 1.0
CP020424_13 13.4|3786665|37|CP020424|PILER-CR,CRT 3786665-3786701 37 NZ_MF547664 Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence 25530-25566 0 1.0
CP020424_13 13.10|3786666|36|CP020424|CRISPRCasFinder 3786666-3786701 36 NZ_MF547664 Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence 25530-25565 0 1.0
CP020424_1 1.9|375110|37|CP020424|CRISPRCasFinder,CRT,PILER-CR 375110-375146 37 LN881738 Escherichia phage slur17, complete genome 5035-5071 1 0.973
CP020424_1 1.9|375110|37|CP020424|CRISPRCasFinder,CRT,PILER-CR 375110-375146 37 KU057941 Clostridium phage CDSH1, complete genome 15366-15402 1 0.973
CP020424_1 1.9|375110|37|CP020424|CRISPRCasFinder,CRT,PILER-CR 375110-375146 37 HM568888 Clostridium phage phiCD38-2, complete genome 14862-14898 1 0.973
CP020424_3 3.6|660385|36|CP020424|CRISPRCasFinder,CRT,PILER-CR 660385-660420 36 MF547662 Clostridioides phage LIBA6276, complete genome 122735-122770 1 0.972
CP020424_3 3.6|660385|36|CP020424|CRISPRCasFinder,CRT,PILER-CR 660385-660420 36 MF547663 Clostridioides phage LIBA2945, complete genome 120998-121033 1 0.972
CP020424_3 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR 660647-660684 38 GU949551 Clostridium phage phiCD6356, complete genome 25335-25372 1 0.974
CP020424_3 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR 660647-660684 38 JX145342 Clostridium phage phiMMP04, complete genome 21201-21238 1 0.974
CP020424_6 6.1|2064065|35|CP020424|CRISPRCasFinder 2064065-2064099 35 NZ_CP033215 Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence 3085-3119 1 0.971
CP020424_7 7.4|3041543|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3041543-3041579 37 MK473382 Clostridium phage JD032, complete genome 12261-12297 1 0.973
CP020424_12 12.4|3539434|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3539434-3539470 37 NZ_CP029156 Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence 27938-27974 1 0.973
CP020424_12 12.4|3539434|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3539434-3539470 37 NZ_CP029153 Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence 21982-22018 1 0.973
CP020424_12 12.4|3539434|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3539434-3539470 37 LN681541 Clostridium phage phiMMP01, complete genome 23007-23043 1 0.973
CP020424_12 12.5|3539500|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3539500-3539536 37 JX145341 Clostridium phage phiMMP02, complete genome 46771-46807 1 0.973
CP020424_12 12.5|3539500|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3539500-3539536 37 KX228400 Clostridium phage CDKM15, complete genome 49015-49051 1 0.973
CP020424_13 13.9|3786599|38|CP020424|CRISPRCasFinder 3786599-3786636 38 NZ_MF547664 Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence 15483-15520 1 0.974
CP020424_13 13.11|3786731|37|CP020424|CRISPRCasFinder 3786731-3786767 37 JX145342 Clostridium phage phiMMP04, complete genome 12593-12629 1 0.973
CP020424_1 1.11|375242|37|CP020424|CRISPRCasFinder,CRT,PILER-CR 375242-375278 37 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 28536-28572 2 0.946
CP020424_3 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR 660647-660684 38 KU057941 Clostridium phage CDSH1, complete genome 30134-30171 2 0.947
CP020424_3 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR 660647-660684 38 LN881738 Escherichia phage slur17, complete genome 31885-31922 2 0.947
CP020424_3 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR 660647-660684 38 NC_028905 Clostridium phage phiCD111, complete genome 29929-29966 2 0.947
CP020424_3 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR 660647-660684 38 NC_028838 Clostridium phage phiCD506, complete genome 23555-23592 2 0.947
CP020424_3 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR 660647-660684 38 HM568888 Clostridium phage phiCD38-2, complete genome 29628-29665 2 0.947
CP020424_3 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR 660647-660684 38 NC_028958 Clostridium phage phiCD146, complete genome 29191-29228 2 0.947
CP020424_7 7.5|3041609|34|CP020424|PILER-CR,CRISPRCasFinder,CRT 3041609-3041642 34 NC_028905 Clostridium phage phiCD111, complete genome 16242-16275 2 0.941
CP020424_7 7.5|3041609|34|CP020424|PILER-CR,CRISPRCasFinder,CRT 3041609-3041642 34 NC_028958 Clostridium phage phiCD146, complete genome 15720-15753 2 0.941
CP020424_12 12.1|3539235|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3539235-3539271 37 NZ_CP020425 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence 7326-7362 2 0.946
CP020424_12 12.1|3539235|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3539235-3539271 37 NZ_CP011969 Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence 2648-2684 2 0.946
CP020424_12 12.2|3539301|38|CP020424|PILER-CR,CRISPRCasFinder,CRT 3539301-3539338 38 NC_028905 Clostridium phage phiCD111, complete genome 3624-3661 2 0.947
CP020424_13 13.3|3786598|39|CP020424|PILER-CR,CRT 3786598-3786636 39 NZ_MF547664 Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence 15483-15521 2 0.949
CP020424_13 13.5|3786730|38|CP020424|PILER-CR,CRT 3786730-3786767 38 JX145342 Clostridium phage phiMMP04, complete genome 12593-12630 2 0.947
CP020424_13 13.13|3786862|36|CP020424|CRISPRCasFinder 3786862-3786897 36 NZ_MG973074 Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence 22132-22167 2 0.944
CP020424_13 13.14|3786861|37|CP020424|CRT 3786861-3786897 37 NZ_MG973074 Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence 22132-22168 2 0.946
CP020424_3 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR 660647-660684 38 MK473382 Clostridium phage JD032, complete genome 10693-10730 3 0.921
CP020424_4 4.5|1898006|36|CP020424|CRISPRCasFinder,CRT,PILER-CR 1898006-1898041 36 NZ_CP029155 Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence 17906-17941 3 0.917
CP020424_1 1.11|375242|37|CP020424|CRISPRCasFinder,CRT,PILER-CR 375242-375278 37 NZ_CP020425 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence 29892-29928 4 0.892
CP020424_1 1.11|375242|37|CP020424|CRISPRCasFinder,CRT,PILER-CR 375242-375278 37 NZ_CP011969 Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence 25214-25250 4 0.892
CP020424_2 2.1|549303|38|CP020424|CRISPRCasFinder,CRT 549303-549340 38 NZ_MG973074 Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence 94861-94898 4 0.895
CP020424_4 4.6|1898071|38|CP020424|CRISPRCasFinder,CRT,PILER-CR 1898071-1898108 38 LN681539 Clostridium phage phiCD505, complete genome 40165-40202 5 0.868
CP020424_5 5.1|2048591|28|CP020424|CRISPRCasFinder 2048591-2048618 28 KY971610 Pseudomonas phage PspYZU05, complete genome 134240-134267 6 0.786
CP020424_7 7.4|3041543|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3041543-3041579 37 KU057941 Clostridium phage CDSH1, complete genome 28567-28603 6 0.838
CP020424_7 7.4|3041543|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3041543-3041579 37 NC_028905 Clostridium phage phiCD111, complete genome 28341-28377 6 0.838
CP020424_7 7.4|3041543|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3041543-3041579 37 LN881738 Escherichia phage slur17, complete genome 33453-33489 6 0.838
CP020424_7 7.4|3041543|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3041543-3041579 37 NC_048665 Clostridium phage phiCDHM14, complete genome 22171-22207 7 0.811
CP020424_7 7.4|3041543|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3041543-3041579 37 HG796225 Clostridium phage phiCDHM13 complete genome 21671-21707 7 0.811
CP020424_7 7.4|3041543|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3041543-3041579 37 LN681538 Clostridium phage phiCD481-1, complete genome 21411-21447 7 0.811
CP020424_7 7.4|3041543|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3041543-3041579 37 HG798901 Clostridium phage phiCDHM11 complete genome 21671-21707 7 0.811
CP020424_7 7.1|3041347|36|CP020424|PILER-CR,CRISPRCasFinder,CRT 3041347-3041382 36 MN693244 Marine virus AFVG_25M166, complete genome 11363-11398 9 0.75
CP020424_12 12.2|3539301|38|CP020424|PILER-CR,CRISPRCasFinder,CRT 3539301-3539338 38 MK448895 Streptococcus phage Javan274, complete genome 1703-1740 9 0.763
CP020424_12 12.2|3539301|38|CP020424|PILER-CR,CRISPRCasFinder,CRT 3539301-3539338 38 MK448769 Streptococcus phage Javan471, complete genome 1703-1740 9 0.763
CP020424_12 12.2|3539301|38|CP020424|PILER-CR,CRISPRCasFinder,CRT 3539301-3539338 38 MK448684 Streptococcus phage Javan151, complete genome 1703-1740 9 0.763
CP020424_1 1.9|375110|37|CP020424|CRISPRCasFinder,CRT,PILER-CR 375110-375146 37 NC_028958 Clostridium phage phiCD146, complete genome 14739-14775 10 0.73
CP020424_1 1.9|375110|37|CP020424|CRISPRCasFinder,CRT,PILER-CR 375110-375146 37 LN881738 Escherichia phage slur17, complete genome 5167-5203 10 0.73
CP020424_1 1.9|375110|37|CP020424|CRISPRCasFinder,CRT,PILER-CR 375110-375146 37 KU057941 Clostridium phage CDSH1, complete genome 15234-15270 10 0.73
CP020424_1 1.9|375110|37|CP020424|CRISPRCasFinder,CRT,PILER-CR 375110-375146 37 HM568888 Clostridium phage phiCD38-2, complete genome 14730-14766 10 0.73
CP020424_4 4.6|1898071|38|CP020424|CRISPRCasFinder,CRT,PILER-CR 1898071-1898108 38 NZ_CP009639 Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence 72001-72038 10 0.737
CP020424_4 4.6|1898071|38|CP020424|CRISPRCasFinder,CRT,PILER-CR 1898071-1898108 38 NZ_CP053963 Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence 113574-113611 10 0.737
CP020424_4 4.6|1898071|38|CP020424|CRISPRCasFinder,CRT,PILER-CR 1898071-1898108 38 NZ_CP047143 Lactobacillus sp. C25 plasmid unnamed, complete sequence 158818-158855 10 0.737
CP020424_4 4.6|1898071|38|CP020424|CRISPRCasFinder,CRT,PILER-CR 1898071-1898108 38 NZ_CP049229 Lactobacillus iners strain C0210C1 plasmid pC0210C1, complete sequence 9438-9475 10 0.737
CP020424_4 4.6|1898071|38|CP020424|CRISPRCasFinder,CRT,PILER-CR 1898071-1898108 38 NZ_CP049229 Lactobacillus iners strain C0210C1 plasmid pC0210C1, complete sequence 18472-18509 10 0.737
CP020424_7 7.1|3041347|36|CP020424|PILER-CR,CRISPRCasFinder,CRT 3041347-3041382 36 NC_019782 Lactobacillus phage AQ113, complete genome 9402-9437 10 0.722
CP020424_7 7.3|3041478|36|CP020424|PILER-CR,CRISPRCasFinder,CRT 3041478-3041513 36 MK448421 Streptococcus satellite phage Javan312, complete genome 4648-4683 10 0.722
CP020424_7 7.2|3041412|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3041412-3041448 37 NZ_CP023496 Staphylococcus simulans strain FDAARGOS_383 plasmid unnamed, complete sequence 97606-97642 11 0.703
CP020424_12 12.7|3539634|37|CP020424|PILER-CR,CRISPRCasFinder,CRT 3539634-3539670 37 MN693317 Marine virus AFVG_25M47, complete genome 11036-11072 11 0.703

1. spacer 1.9|375110|37|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 0, identity: 1.0 

ggcttgcaaaccattcgacaatgctatttattatttc	CRISPR spacer
ggcttgcaaaccattcgacaatgctatttattatttc	Protospacer
*************************************

2. spacer 2.3|549437|36|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0 

cttagagaaagcgaaaacgtaccattaaaatcaaat	CRISPR spacer
cttagagaaagcgaaaacgtaccattaaaatcaaat	Protospacer
************************************

3. spacer 5.1|2048591|28|CP020424|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0 

gttgattcatattgctttaacttattac	CRISPR spacer
gttgattcatattgctttaacttattac	Protospacer
****************************

4. spacer 7.3|3041478|36|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 0, identity: 1.0 

gaattatatattgcaaaaaaatatggagtcacagag	CRISPR spacer
gaattatatattgcaaaaaaatatggagtcacagag	Protospacer
************************************

5. spacer 12.1|3539235|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 0, identity: 1.0 

tcagcatctatgccatttactttattaacttcctcat	CRISPR spacer
tcagcatctatgccatttactttattaacttcctcat	Protospacer
*************************************

6. spacer 12.1|3539235|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029156 (Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0 

tcagcatctatgccatttactttattaacttcctcat	CRISPR spacer
tcagcatctatgccatttactttattaacttcctcat	Protospacer
*************************************

7. spacer 12.1|3539235|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029153 (Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0 

tcagcatctatgccatttactttattaacttcctcat	CRISPR spacer
tcagcatctatgccatttactttattaacttcctcat	Protospacer
*************************************

8. spacer 12.7|3539634|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to LN680005 (Clostridium phage phiCDHM4 gp01 gene for putative capsid protein) position: , mismatch: 0, identity: 1.0 

ttgggtattttgctaaaaataaagctattaaattaga	CRISPR spacer
ttgggtattttgctaaaaataaagctattaaattaga	Protospacer
*************************************

9. spacer 13.4|3786665|37|CP020424|PILER-CR,CRT matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 0, identity: 1.0 

accaattatgtacagtttagttactgtgttaagtctt	CRISPR spacer
accaattatgtacagtttagttactgtgttaagtctt	Protospacer
*************************************

10. spacer 13.10|3786666|36|CP020424|CRISPRCasFinder matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 0, identity: 1.0 

ccaattatgtacagtttagttactgtgttaagtctt	CRISPR spacer
ccaattatgtacagtttagttactgtgttaagtctt	Protospacer
************************************

11. spacer 1.9|375110|37|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 1, identity: 0.973 

ggcttgcaaaccattcgacaatgctatttattatttc	CRISPR spacer
ggcttacaaaccattcgacaatgctatttattatttc	Protospacer
*****.*******************************

12. spacer 1.9|375110|37|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 1, identity: 0.973 

ggcttgcaaaccattcgacaatgctatttattatttc	CRISPR spacer
ggcttacaaaccattcgacaatgctatttattatttc	Protospacer
*****.*******************************

13. spacer 1.9|375110|37|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 1, identity: 0.973 

ggcttgcaaaccattcgacaatgctatttattatttc	CRISPR spacer
ggcttacaaaccattcgacaatgctatttattatttc	Protospacer
*****.*******************************

14. spacer 3.6|660385|36|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 1, identity: 0.972 

atgtatttatttgttcttgtactattgttttactct	CRISPR spacer
atgtatttatttgttcttgtactattgttttacttt	Protospacer
**********************************.*

15. spacer 3.6|660385|36|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 1, identity: 0.972 

atgtatttatttgttcttgtactattgttttactct	CRISPR spacer
atgtatttatttgttcttgtactattgttttacttt	Protospacer
**********************************.*

16. spacer 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 1, identity: 0.974 

ttgtaaggataagcctagagagaatagcccttctctct	CRISPR spacer
ctgtaaggataagcctagagagaatagcccttctctct	Protospacer
.*************************************

17. spacer 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 1, identity: 0.974 

ttgtaaggataagcctagagagaatagcccttctctct	CRISPR spacer
ctgtaaggataagcctagagagaatagcccttctctct	Protospacer
.*************************************

18. spacer 6.1|2064065|35|CP020424|CRISPRCasFinder matches to NZ_CP033215 (Clostridioides difficile strain 12038 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.971 

agcgccaacaaacaaacttcacatgcgttcagttt	CRISPR spacer
agcgccaacaaacaaacttcacatgtgttcagttt	Protospacer
*************************.*********

19. spacer 7.4|3041543|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 1, identity: 0.973 

gttttcaaaaaaaatggaacaatcatacaaaatgatt	CRISPR spacer
gtttttaaaaaaaatggaacaatcatacaaaatgatt	Protospacer
*****.*******************************

20. spacer 12.4|3539434|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029156 (Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.973 

ctatcggcttcttgaaaagcctcatctgctctattta	CRISPR spacer
ctatcggcttcttgaaaagcctcatctgctctatcta	Protospacer
**********************************.**

21. spacer 12.4|3539434|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029153 (Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.973 

ctatcggcttcttgaaaagcctcatctgctctattta	CRISPR spacer
ctatcggcttcttgaaaagcctcatctgctctatcta	Protospacer
**********************************.**

22. spacer 12.4|3539434|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to LN681541 (Clostridium phage phiMMP01, complete genome) position: , mismatch: 1, identity: 0.973 

ctatcggcttcttgaaaagcctcatctgctctattta	CRISPR spacer
ctatcggcttcttgaaaagcctcatctgctctatcta	Protospacer
**********************************.**

23. spacer 12.5|3539500|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 1, identity: 0.973 

ttcattaaatccccaaccgaattatctttcagcattt	CRISPR spacer
ttcattaaatccccaaccgaattatctttcaacattt	Protospacer
*******************************.*****

24. spacer 12.5|3539500|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 1, identity: 0.973 

ttcattaaatccccaaccgaattatctttcagcattt	CRISPR spacer
ttcattaaatccccaaccgaattatctttcaacattt	Protospacer
*******************************.*****

25. spacer 13.9|3786599|38|CP020424|CRISPRCasFinder matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 1, identity: 0.974 

aagaaaataagtttaaaaaaaggtttcattattatatc	CRISPR spacer
aagaaaataagtttaaaaaaaggtttcattattctatc	Protospacer
********************************* ****

26. spacer 13.11|3786731|37|CP020424|CRISPRCasFinder matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 1, identity: 0.973 

tccttttataaatatcttctgacatgtgtatatgctt	CRISPR spacer
accttttataaatatcttctgacatgtgtatatgctt	Protospacer
 ************************************

27. spacer 1.11|375242|37|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 2, identity: 0.946 

tagtctcaactttcaaataatcttctttttctatcag	CRISPR spacer
tagtctcaactttcaaataatcttctttttctaccaa	Protospacer
*********************************.**.

28. spacer 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 2, identity: 0.947 

ttgtaaggataagcctagagagaatagcccttctctct	CRISPR spacer
ctgtaaggataagcctagagggaatagcccttctctct	Protospacer
.*******************.*****************

29. spacer 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 2, identity: 0.947 

ttgtaaggataagcctagagagaatagcccttctctct	CRISPR spacer
ctgtaaggataagcctagagggaatagcccttctctct	Protospacer
.*******************.*****************

30. spacer 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 2, identity: 0.947 

ttgtaaggataagcctagagagaatagcccttctctct	CRISPR spacer
ctgtaaggataagcctagagggaatagcccttctctct	Protospacer
.*******************.*****************

31. spacer 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 2, identity: 0.947 

ttgtaaggataagcctagagagaatagcccttctctct	CRISPR spacer
ctgtaaggataagcctagagggaatagcccttctctct	Protospacer
.*******************.*****************

32. spacer 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 2, identity: 0.947 

ttgtaaggataagcctagagagaatagcccttctctct	CRISPR spacer
ctgtaaggataagcctagagggaatagcccttctctct	Protospacer
.*******************.*****************

33. spacer 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.947 

ttgtaaggataagcctagagagaatagcccttctctct	CRISPR spacer
ctgtaaggataagcctagagggaatagcccttctctct	Protospacer
.*******************.*****************

34. spacer 7.5|3041609|34|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 2, identity: 0.941 

tctataattatgcgtgatttgattggtagaaacc	CRISPR spacer
tccataatcatgcgtgatttgattggtagaaacc	Protospacer
**.*****.*************************

35. spacer 7.5|3041609|34|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 2, identity: 0.941 

tctataattatgcgtgatttgattggtagaaacc	CRISPR spacer
tctataattatgcgagatttaattggtagaaacc	Protospacer
************** *****.*************

36. spacer 12.1|3539235|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.946 

tcagcatctatgccatttactttattaacttcctcat	CRISPR spacer
ttagtatctatgccatttactttattaacttcctcat	Protospacer
*.**.********************************

37. spacer 12.1|3539235|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.946 

tcagcatctatgccatttactttattaacttcctcat	CRISPR spacer
ttagtatctatgccatttactttattaacttcctcat	Protospacer
*.**.********************************

38. spacer 12.2|3539301|38|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 2, identity: 0.947 

agtatttcagcaattttacttttaataactttatcagc	CRISPR spacer
agtgtttcagcaattttccttttaataactttatcagc	Protospacer
***.************* ********************

39. spacer 13.3|3786598|39|CP020424|PILER-CR,CRT matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 2, identity: 0.949 

aaagaaaataagtttaaaaaaaggtttcattattatatc	CRISPR spacer
taagaaaataagtttaaaaaaaggtttcattattctatc	Protospacer
 ********************************* ****

40. spacer 13.5|3786730|38|CP020424|PILER-CR,CRT matches to JX145342 (Clostridium phage phiMMP04, complete genome) position: , mismatch: 2, identity: 0.947 

atccttttataaatatcttctgacatgtgtatatgctt	CRISPR spacer
caccttttataaatatcttctgacatgtgtatatgctt	Protospacer
  ************************************

41. spacer 13.13|3786862|36|CP020424|CRISPRCasFinder matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 2, identity: 0.944 

tgctgtgatttcaataataaaacaattaataattgt	CRISPR spacer
tgctgtgattttattaataaaacaattaataattgt	Protospacer
***********.* **********************

42. spacer 13.14|3786861|37|CP020424|CRT matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 2, identity: 0.946 

ttgctgtgatttcaataataaaacaattaataattgt	CRISPR spacer
ttgctgtgattttattaataaaacaattaataattgt	Protospacer
************.* **********************

43. spacer 3.10|660647|38|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to MK473382 (Clostridium phage JD032, complete genome) position: , mismatch: 3, identity: 0.921 

-ttgtaaggataagcctagagagaatagcccttctctct	CRISPR spacer
gctgtaaggat-agcctagagagaataacccttctctct	Protospacer
 .********* ***************.***********

44. spacer 4.5|1898006|36|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.917 

agaaagattaaaaaatagaatgatacttcttacaac	CRISPR spacer
agaaagattaaaaaatagaatgatacttcctccaat	Protospacer
*****************************.* ***.

45. spacer 1.11|375242|37|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.892 

tagtctcaactttcaaataatcttctttttctatcag	CRISPR spacer
tagtctcaacttttaaatattcttctttttctattaa	Protospacer
*************.***** **************.*.

46. spacer 1.11|375242|37|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.892 

tagtctcaactttcaaataatcttctttttctatcag	CRISPR spacer
tagtctcaacttttaaatattcttctttttctattaa	Protospacer
*************.***** **************.*.

47. spacer 2.1|549303|38|CP020424|CRISPRCasFinder,CRT matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 4, identity: 0.895 

ataagtaatataaatttatgtaaagcaacaaaagatag	CRISPR spacer
gtaagtaatataaatctatgcaaagcaacaaaagatgg	Protospacer
.**************.****.***************.*

48. spacer 4.6|1898071|38|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 5, identity: 0.868 

gaataacaataagaataacaacaacaataaaaaggtta	CRISPR spacer
gaataacaataagaataacaacaacaataaggatgatt	Protospacer
******************************..* * *

49. spacer 5.1|2048591|28|CP020424|CRISPRCasFinder matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 6, identity: 0.786 

gttgattcatattgctttaacttattac	CRISPR spacer
gatgattcgtattgctgtaacttatcgt	Protospacer
* ******.******* ********...

50. spacer 7.4|3041543|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 6, identity: 0.838 

---gttttcaaaaaaaatggaacaatcatacaaaatgatt	CRISPR spacer
ccgatttt---gaaaaatggaacaatcgtacaaaatgatt	Protospacer
   .****   .***************.************

51. spacer 7.4|3041543|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 6, identity: 0.838 

---gttttcaaaaaaaatggaacaatcatacaaaatgatt	CRISPR spacer
ccgatttt---gaaaaatggaacaatcgtacaaaatgatt	Protospacer
   .****   .***************.************

52. spacer 7.4|3041543|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 6, identity: 0.838 

---gttttcaaaaaaaatggaacaatcatacaaaatgatt	CRISPR spacer
ccgatttt---gaaaaatggaacaatcgtacaaaatgatt	Protospacer
   .****   .***************.************

53. spacer 7.4|3041543|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to NC_048665 (Clostridium phage phiCDHM14, complete genome) position: , mismatch: 7, identity: 0.811 

---gttttcaaaaaaaatggaacaatcatacaaaatgatt	CRISPR spacer
ccgatttt---gaaaaatggaacaatcgcacaaaatgatt	Protospacer
   .****   .***************..***********

54. spacer 7.4|3041543|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to HG796225 (Clostridium phage phiCDHM13 complete genome) position: , mismatch: 7, identity: 0.811 

---gttttcaaaaaaaatggaacaatcatacaaaatgatt	CRISPR spacer
ccgatttt---gaaaaatggaacaatcgcacaaaatgatt	Protospacer
   .****   .***************..***********

55. spacer 7.4|3041543|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to LN681538 (Clostridium phage phiCD481-1, complete genome) position: , mismatch: 7, identity: 0.811 

---gttttcaaaaaaaatggaacaatcatacaaaatgatt	CRISPR spacer
ccgatttt---gaaaaatggaacaatcgcacaaaatgatt	Protospacer
   .****   .***************..***********

56. spacer 7.4|3041543|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to HG798901 (Clostridium phage phiCDHM11 complete genome) position: , mismatch: 7, identity: 0.811 

---gttttcaaaaaaaatggaacaatcatacaaaatgatt	CRISPR spacer
ccgatttt---gaaaaatggaacaatcgcacaaaatgatt	Protospacer
   .****   .***************..***********

57. spacer 7.1|3041347|36|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to MN693244 (Marine virus AFVG_25M166, complete genome) position: , mismatch: 9, identity: 0.75 

tttccctgcattaacaaaatcttcaacattcaaaaa	CRISPR spacer
ataaataccattagcaaaatcttcatcattcaaaaa	Protospacer
 *   .  *****.*********** **********

58. spacer 12.2|3539301|38|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to MK448895 (Streptococcus phage Javan274, complete genome) position: , mismatch: 9, identity: 0.763 

--agtatttcagcaattttacttttaataactttatcagc	CRISPR spacer
ctattgattt--cagttttacttttagtaactttatcaga	Protospacer
  * *. **.  **.***********.************

59. spacer 12.2|3539301|38|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to MK448769 (Streptococcus phage Javan471, complete genome) position: , mismatch: 9, identity: 0.763 

--agtatttcagcaattttacttttaataactttatcagc	CRISPR spacer
ctattgattt--cagttttacttttagtaactttatcaga	Protospacer
  * *. **.  **.***********.************

60. spacer 12.2|3539301|38|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to MK448684 (Streptococcus phage Javan151, complete genome) position: , mismatch: 9, identity: 0.763 

--agtatttcagcaattttacttttaataactttatcagc	CRISPR spacer
ctattgattt--cagttttacttttagtaactttatcaga	Protospacer
  * *. **.  **.***********.************

61. spacer 1.9|375110|37|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 10, identity: 0.73 

ggcttgcaaaccattcgacaatgctatttattatttc	CRISPR spacer
tttgtttaaaccattcgacaatattatttattatagc	Protospacer
  . * .***************..**********  *

62. spacer 1.9|375110|37|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 10, identity: 0.73 

ggcttgcaaaccattcgacaatgctatttattatttc	CRISPR spacer
tttgtttaaaccattcgacaatattatttattatagc	Protospacer
  . * .***************..**********  *

63. spacer 1.9|375110|37|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 10, identity: 0.73 

ggcttgcaaaccattcgacaatgctatttattatttc	CRISPR spacer
tttgtttaaaccattcgacaatattatttattatagc	Protospacer
  . * .***************..**********  *

64. spacer 1.9|375110|37|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 10, identity: 0.73 

ggcttgcaaaccattcgacaatgctatttattatttc	CRISPR spacer
tttgtttaaaccattcgacaatattatttattatagc	Protospacer
  . * .***************..**********  *

65. spacer 4.6|1898071|38|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009639 (Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence) position: , mismatch: 10, identity: 0.737 

gaataacaataagaataacaacaacaataaaaaggtta	CRISPR spacer
caataacaataacaataacaataacaattcgaataatg	Protospacer
 *********** ********.******  .** . *.

66. spacer 4.6|1898071|38|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053963 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.737 

gaataacaataagaataacaacaacaataaaaaggtta	CRISPR spacer
caataacaataacaataacaataacaattcgaataatg	Protospacer
 *********** ********.******  .** . *.

67. spacer 4.6|1898071|38|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047143 (Lactobacillus sp. C25 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.737 

gaataacaataagaataacaacaacaataaaaaggtta	CRISPR spacer
taataacaacaataataacaacaacaataactcatcaa	Protospacer
 ********.** *****************   . . *

68. spacer 4.6|1898071|38|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049229 (Lactobacillus iners strain C0210C1 plasmid pC0210C1, complete sequence) position: , mismatch: 10, identity: 0.737 

gaataacaataagaataacaacaacaataaaaaggtta	CRISPR spacer
taataacaataataataacaataacaatagttctaata	Protospacer
 *********** ********.*******.    . **

69. spacer 4.6|1898071|38|CP020424|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049229 (Lactobacillus iners strain C0210C1 plasmid pC0210C1, complete sequence) position: , mismatch: 10, identity: 0.737 

gaataacaataagaataacaacaacaataaaaaggtta	CRISPR spacer
taataacaataataataacaataacaatagttctaata	Protospacer
 *********** ********.*******.    . **

70. spacer 7.1|3041347|36|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to NC_019782 (Lactobacillus phage AQ113, complete genome) position: , mismatch: 10, identity: 0.722 

tttccctgcattaacaaaatcttcaacattcaaaaa	CRISPR spacer
actttcaacattaataaaatcttcaacattaaaatt	Protospacer
 .*..* .******.*************** ***

71. spacer 7.3|3041478|36|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to MK448421 (Streptococcus satellite phage Javan312, complete genome) position: , mismatch: 10, identity: 0.722 

gaattatatattgcaaaaaaatatggagtcacagag---	CRISPR spacer
cgtttatatattgcaaaaaaatataaagt---ggatttt	Protospacer
 . *********************..***   .**

72. spacer 7.2|3041412|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023496 (Staphylococcus simulans strain FDAARGOS_383 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.703 

tatgaatatattacataatcataaagatttacaaatg	CRISPR spacer
ttaagatatattacataatcccaaagatttaagataa	Protospacer
*  ..*************** .********* .*  .

73. spacer 12.7|3539634|37|CP020424|PILER-CR,CRISPRCasFinder,CRT matches to MN693317 (Marine virus AFVG_25M47, complete genome) position: , mismatch: 11, identity: 0.703 

ttgggtattttgctaaaaataaagctattaaattaga	CRISPR spacer
ctgaaagcagagctaaaaataaagctggtaaattaga	Protospacer
.**.. ..   ***************. *********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 620168 : 629895 11 Pandoravirus(37.5%) NA NA
DBSCAN-SWA_2 711931 : 764126 55 Clostridium_phage(43.48%) plate,portal,tRNA,tail,protease NA
DBSCAN-SWA_3 1842103 : 1935065 113 Clostridium_phage(74.7%) integrase,head,terminase,portal,coat,capsid,tail attL 1876753:1876769|attR 1929175:1929191
DBSCAN-SWA_4 2521362 : 2543517 24 Streptococcus_phage(73.33%) NA NA
DBSCAN-SWA_5 3220562 : 3229515 8 Catovirus(50.0%) NA NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage