CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP020410	Corynebacterium diphtheriae strain FDAARGOS_197 chromosome, complete genome	0 crisprs	DEDDh,cas3,WYL,cas4,csa3,DinG,cas5,cas7,cse2gr11,cas8e,cas6e,cas1,cas2,cas9	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

62166 : 120896

Bacillus_phage(33.33%)

transposase,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARB86927.1\|62166_62670_-\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
ARB86928.1\|62715_63339_+	RNA polymerase subunit sigma	A0A076YQ50	Rhizobium_phage	1.7e-08	28.5
ARB86929.1\|63335_63587_+	mycothiol system anti-sigma-R factor	NA	NA	NA	NA
ARB86930.1\|63591_63936_-	DUF4288 domain-containing protein	NA	NA	NA	NA
ARB86931.1\|64273_64534_-	WhiB family transcriptional regulator	A0A2P1N2X5	Mycobacterium_phage	2.0e-11	45.1
ARB86932.1\|65166_65628_+	hypothetical protein	NA	NA	NA	NA
ARB86933.1\|65621_66884_-	hypothetical protein	NA	NA	NA	NA
ARB86934.1\|66880_68191_-	ATP-dependent helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.7e-42	30.0
ARB86935.1\|68448_68676_+	DUF3107 domain-containing protein	NA	NA	NA	NA
ARB86936.1\|68678_69557_+	DUF3152 domain-containing protein	NA	NA	NA	NA
ARB86937.1\|69580_70438_+	TIGR02569 family protein	NA	NA	NA	NA
ARB86938.1\|70441_73624_+	ATP-dependent helicase	NA	NA	NA	NA
ARB86939.1\|73617_76848_+	ATP-dependent helicase	A7KV33	Bacillus_phage	1.5e-18	22.9
ARB86940.1\|76892_77981_+	Ion channel protein	NA	NA	NA	NA
ARB88934.1\|78012_78696_+	NUDIX domain-containing protein	NA	NA	NA	NA
ARB86941.1\|78688_80740_+	ATP-dependent DNA helicase UvrD2	S5MMD7	Bacillus_phage	2.9e-44	27.5
ARB86942.1\|80684_81578_-	hypothetical protein	NA	NA	NA	NA
ARB86943.1\|81613_82135_+	M48 family peptidase	NA	NA	NA	NA
ARB86944.1\|82131_83523_-	hydrolase	NA	NA	NA	NA
ARB88935.1\|83615_84656_+	PDZ domain-containing protein	NA	NA	NA	NA
ARB86945.1\|84667_85366_-	hypothetical protein	NA	NA	NA	NA
ARB86946.1\|85416_85920_-	hypothetical protein	NA	NA	NA	NA
ARB86947.1\|86092_89056_+	membrane protein	NA	NA	NA	NA
ARB86948.1\|89539_90109_-	sodium:glutamate symporter	NA	NA	NA	NA
ARB86949.1\|90638_91649_-\|protease	protease	NA	NA	NA	NA
ARB86950.1\|91651_92608_-	DUF418 domain-containing protein	NA	NA	NA	NA
ARB86951.1\|93286_94768_+	oxaloacetate decarboxylase	NA	NA	NA	NA
ARB86952.1\|94780_96337_+	acyl-CoA carboxylase subunit beta	NA	NA	NA	NA
ARB86953.1\|96350_96614_+	hypothetical protein	NA	NA	NA	NA
ARB86954.1\|96638_97007_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
ARB86955.1\|97209_98301_+	hypothetical protein	NA	NA	NA	NA
ARB86956.1\|98319_99108_-	histidinol-phosphatase	NA	NA	NA	NA
ARB88936.1\|99164_99980_-	inositol monophosphatase family protein	NA	NA	NA	NA
ARB86957.1\|100159_101269_+	peptide chain release factor 2	NA	NA	NA	NA
ARB86958.1\|101265_102864_-	hypothetical protein	NA	NA	NA	NA
ARB86959.1\|103042_103732_+	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	1.2e-26	37.7
ARB86960.1\|103748_104651_+	ABC transporter permease	NA	NA	NA	NA
ARB86961.1\|104757_105249_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	1.5e-36	52.2
ARB86962.1\|105839_107219_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	7.9e-38	33.7
ARB86963.1\|107328_110262_+	type 2 lantipeptide synthetase LanM	NA	NA	NA	NA
ARB86964.1\|110249_112382_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	5.3e-33	26.2
ARB86965.1\|112381_113260_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.6e-30	35.4
ARB86966.1\|113259_114057_+	lantibiotic ABC transporter permease	NA	NA	NA	NA
AVH82649.1\|114222_114489_-	hypothetical protein	NA	NA	NA	NA
ARB86967.1\|115523_115805_+	hypothetical protein	NA	NA	NA	NA
ARB88937.2\|115877_116681_+\|transposase	IS3 family transposase	NA	NA	NA	NA
ARB86968.1\|116903_117245_-	cupin	NA	NA	NA	NA
ARB86969.1\|117278_118082_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
ARB86970.1\|118203_118434_-	hypothetical protein	NA	NA	NA	NA
ARB86971.1\|118498_119902_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-28	34.4
ARB86972.1\|119787_120597_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	6.7e-13	26.9
ARB86973.1\|120593_120896_-\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1208571 : 1259079

Gordonia_phage(27.78%)

protease,portal,terminase,integrase,tRNA

attL 1203450:1203465|attR 1262100:1262115

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1203450:1203465	attL	NA	NA	NA	NA
ARB87884.1\|1208571_1211280_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	7.2e-136	37.4
ARB87885.1\|1211374_1212355_-	malate dehydrogenase	NA	NA	NA	NA
ARB87886.1\|1212837_1213590_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
ARB87887.1\|1213626_1214919_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.3e-131	54.2
ARB87888.1\|1215065_1217591_-	aminodeoxychorismate synthase, component I	S4VNU7	Pandoravirus	6.2e-65	30.4
ARB87889.1\|1217685_1218315_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.6e-38	44.0
ARB87890.1\|1218332_1218932_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.3e-41	46.7
ARB87891.1\|1219097_1220573_-	trigger factor	NA	NA	NA	NA
ARB87892.1\|1220578_1220758_-	hypothetical protein	NA	NA	NA	NA
ARB87893.1\|1221270_1221507_+	hypothetical protein	NA	NA	NA	NA
ARB87894.1\|1221653_1222436_+	hypothetical protein	NA	NA	NA	NA
ARB87895.1\|1222512_1222986_-	ribose-5-phosphate isomerase	NA	NA	NA	NA
ARB87896.1\|1223017_1223638_-	disulfide bond formation protein DsbA	NA	NA	NA	NA
ARB87897.1\|1223759_1226378_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	5.7e-45	28.0
ARB87898.1\|1226633_1227650_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
ARB87899.1\|1227661_1228054_+	globin	NA	NA	NA	NA
ARB87900.1\|1228050_1228671_-	hypothetical protein	NA	NA	NA	NA
ARB87901.1\|1228680_1229124_-	acyl-CoA thioesterase	NA	NA	NA	NA
ARB87902.1\|1229250_1230921_-	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	1.3e-47	28.2
ARB87903.1\|1231018_1231507_-	single-stranded DNA-binding protein	NA	NA	NA	NA
ARB87904.1\|1231690_1233727_-	copper resistance protein	NA	NA	NA	NA
ARB87905.1\|1233953_1236239_+	carbon starvation protein A	NA	NA	NA	NA
ARB87906.1\|1236259_1236460_+	DUF466 domain-containing protein	NA	NA	NA	NA
ARB87907.1\|1237931_1239137_-	MFS transporter	NA	NA	NA	NA
ARB87908.1\|1239541_1240573_+	oxidoreductase	NA	NA	NA	NA
ARB88985.1\|1240632_1241433_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
ARB87909.1\|1241451_1242084_+	oligoribonuclease	M4M9I5	Vibrio_phage	4.3e-23	38.6
ARB87910.1\|1242261_1243092_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
ARB87911.1\|1243092_1244346_-	transpeptidase	NA	NA	NA	NA
ARB87912.2\|1244588_1244855_-	XRE family transcriptional regulator	NA	NA	NA	NA
ARB87913.1\|1244943_1245177_+	DNA-binding protein	NA	NA	NA	NA
ARB87914.1\|1245173_1245458_+	hypothetical protein	NA	NA	NA	NA
ARB87915.1\|1245450_1245780_+	hypothetical protein	NA	NA	NA	NA
ARB87916.1\|1245751_1245979_-	hypothetical protein	NA	NA	NA	NA
ARB87917.1\|1246664_1247066_+	hypothetical protein	NA	NA	NA	NA
ARB87918.1\|1247058_1247337_+	HNH endonuclease	G9FGW5	Rhodococcus_phage	3.4e-25	61.8
ARB87919.1\|1247457_1247778_+	hypothetical protein	NA	NA	NA	NA
ARB87920.2\|1247839_1249177_+\|terminase	terminase	A0A2P1CBZ2	Gordonia_phage	6.4e-101	46.4
ARB87921.1\|1249415_1250465_+\|portal	phage portal protein	G9FGU9	Rhodococcus_phage	2.5e-52	45.3
AVH82662.1\|1250448_1251000_+	hypothetical protein	A0A2H4P9D2	Corynebacterium_phage	1.0e-73	71.8
ARB87922.1\|1251190_1251427_+	hypothetical protein	NA	NA	NA	NA
ARB87923.1\|1251419_1252823_+	hypothetical protein	G9FGV2	Rhodococcus_phage	2.2e-59	42.7
ARB87924.1\|1252822_1253134_+	hypothetical protein	A0A2P1CBZ4	Gordonia_phage	5.2e-14	44.7
ARB87925.1\|1253130_1253505_+	hypothetical protein	NA	NA	NA	NA
ARB87926.1\|1253504_1253927_+	hypothetical protein	A0A160DHJ4	Gordonia_phage	1.4e-17	38.4
ARB87927.1\|1253929_1254343_+	hypothetical protein	A0A2P1CBZ9	Gordonia_phage	5.6e-24	46.9
ARB87928.1\|1254342_1254654_+	hypothetical protein	NA	NA	NA	NA
AVH82663.1\|1254731_1256297_+	hypothetical protein	A0A222ZGY6	Arthrobacter_phage	1.5e-61	46.3
ARB87929.1\|1256290_1257478_+	hypothetical protein	NA	NA	NA	NA
ARB87930.1\|1257478_1258267_+	collagen-like triple helix repeat-containing protein	NA	NA	NA	NA
ARB87931.1\|1258263_1259079_-\|integrase	integrase	A0A2P1CCU8	Gordonia_phage	1.2e-57	46.5
1262100:1262115	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1994497 : 2057931

Corynebacterium_phage(79.41%)

protease,portal,tail,head,terminase,capsid,integrase

attL 2019329:2019352|attR 2058218:2058241

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARB88502.1\|1994497_1995418_+\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
ARB88503.1\|1995407_1996316_+	glycine/betaine ABC transporter	NA	NA	NA	NA
ARB88504.1\|1996336_1996774_-	hypothetical protein	NA	NA	NA	NA
ARB88505.1\|1996999_2000425_-	arabinosyltransferase	NA	NA	NA	NA
ARB88506.1\|2000417_2002418_-	hypothetical protein	NA	NA	NA	NA
ARB88507.1\|2002612_2003374_-	decaprenylphospho-beta-D-erythro-pentofuranosid- 2-ulose 2-reductase	NA	NA	NA	NA
ARB88508.1\|2003393_2004860_-	FAD-binding oxidoreductase	NA	NA	NA	NA
ARB88509.1\|2004976_2005225_-	hypothetical protein	NA	NA	NA	NA
ARB88510.1\|2005253_2005688_+	hypothetical protein	NA	NA	NA	NA
ARB88511.1\|2005684_2006233_+	hypothetical protein	NA	NA	NA	NA
ARB88512.1\|2006244_2006664_+	GtrA family protein	NA	NA	NA	NA
ARB88513.1\|2006873_2007653_+	DUF559 domain-containing protein	NA	NA	NA	NA
ARB88514.1\|2007786_2008704_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
ARB88515.1\|2008877_2009843_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
ARB88516.1\|2009942_2010677_+	metal ABC transporter ATP-binding protein	R4TX06	Phaeocystis_globosa_virus	1.8e-09	26.3
ARB88517.1\|2010673_2011573_+	metal ABC transporter permease	NA	NA	NA	NA
ARB88518.1\|2011569_2012421_+	metal ABC transporter permease	NA	NA	NA	NA
ARB88519.1\|2012505_2013543_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
ARB88520.1\|2013608_2014388_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.9e-10	26.5
ARB88521.1\|2014406_2015312_-	ABC transporter permease	NA	NA	NA	NA
ARB88522.1\|2015402_2016596_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
ARB88523.1\|2016592_2017540_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA
ARB88524.1\|2017896_2018931_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	5.4e-15	24.8
ARB88525.1\|2019274_2019469_+	hypothetical protein	NA	NA	NA	NA
2019329:2019352	attL	NA	NA	NA	NA
ARB88526.1\|2019482_2019662_-	hypothetical protein	NA	NA	NA	NA
ARB88527.1\|2019695_2021270_+	carboxylate transporter	NA	NA	NA	NA
ARB88528.1\|2022869_2024096_-\|integrase	site-specific integrase	A0A1W6JRD7	Corynebacterium_phage	5.3e-219	90.9
ARB88529.1\|2024195_2025218_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
ARB88530.1\|2025229_2025793_-	hypothetical protein	NA	NA	NA	NA
ARB88531.1\|2025887_2026295_-	ImmA/IrrE family metallo-endopeptidase	A0A1W6JRC2	Corynebacterium_phage	1.7e-73	99.3
ARB88532.1\|2026908_2027151_+	XRE family transcriptional regulator	A0A1W6JRC7	Corynebacterium_phage	1.6e-34	98.7
ARB88533.1\|2027389_2027716_-	hypothetical protein	NA	NA	NA	NA
ARB89025.1\|2027748_2028129_-	hypothetical protein	NA	NA	NA	NA
ARB88534.1\|2028211_2029030_+	phage antirepressor Ant	A0A1W6JRI1	Corynebacterium_phage	1.5e-137	89.4
ARB88535.1\|2029049_2029250_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
ARB88536.1\|2029246_2029489_+	hypothetical protein	A0A1W6JRC8	Corynebacterium_phage	1.9e-19	59.0
ARB88537.1\|2029500_2029725_+	hypothetical protein	A0A1W6JRD0	Corynebacterium_phage	6.4e-06	44.4
ARB88538.1\|2031420_2032629_+	hypothetical protein	A0A220NQT1	Corynebacterium_phage	2.4e-131	66.0
ARB88539.1\|2032621_2033236_+	hypothetical protein	A0A1W6JRC6	Corynebacterium_phage	1.4e-90	85.1
ARB88540.1\|2033287_2033605_+	HNH endonuclease	A0A1W6JRD4	Corynebacterium_phage	1.4e-51	100.0
ARB88541.1\|2033757_2034102_+	hypothetical protein	A0A1W6JRH9	Corynebacterium_phage	3.5e-19	50.5
ARB88542.1\|2034091_2035693_+\|terminase	terminase	A0A1W6JRF6	Corynebacterium_phage	3.6e-159	77.2
ARB88543.1\|2035705_2036956_+\|portal	phage portal protein	A0A1W6JRE1	Corynebacterium_phage	2.5e-224	93.0
ARB88544.1\|2036952_2037996_+\|head,protease	HK97 family phage prohead protease	A0A1W6JRD9	Corynebacterium_phage	3.4e-182	91.7
ARB88545.1\|2037992_2039243_+\|capsid	phage major capsid protein	A0A1W6JRF1	Corynebacterium_phage	5.8e-205	88.9
ARB88546.1\|2039242_2039443_+	hypothetical protein	A0A1W6JRE2	Corynebacterium_phage	6.7e-15	63.6
ARB88547.1\|2039464_2039947_+	hypothetical protein	A0A1W6JRD8	Corynebacterium_phage	1.6e-83	93.8
ARB88548.1\|2039943_2040306_+	hypothetical protein	A0A1W6JRD5	Corynebacterium_phage	3.6e-59	93.3
ARB88549.1\|2040298_2040565_+	hypothetical protein	A0A1W6JRE6	Corynebacterium_phage	1.5e-38	94.3
ARB88550.1\|2040554_2040932_+	hypothetical protein	A0A1W6JRI9	Corynebacterium_phage	1.1e-58	88.0
ARB88551.1\|2040960_2041908_+\|tail	phage tail protein	A0A1W6JRH0	Corynebacterium_phage	4.3e-152	83.8
ARB88552.1\|2042005_2042383_+	hypothetical protein	A0A1W6JRK1	Corynebacterium_phage	2.7e-57	91.2
ARB88553.1\|2042544_2042754_+	hypothetical protein	A0A1W6JRF2	Corynebacterium_phage	9.1e-31	88.4
ARB88554.1\|2042766_2048409_+	hypothetical protein	A0A1W6JRG1	Corynebacterium_phage	0.0e+00	81.8
ARB88555.1\|2048418_2049171_+	hypothetical protein	A0A1W6JRF0	Corynebacterium_phage	1.0e-127	88.0
ARB88556.1\|2049171_2050032_+	hypothetical protein	Q37921	Corynephage	5.2e-165	99.7
ARB88557.1\|2050031_2051147_+	hypothetical protein	Q37922	Corynephage	1.6e-150	88.1
ARB88558.1\|2051146_2052574_+	hypothetical protein	A0A1W6JRF8	Corynebacterium_phage	1.7e-43	48.8
ARB88559.1\|2052573_2053248_+	hypothetical protein	NA	NA	NA	NA
ARB89026.1\|2053991_2054768_+	N-acetylmuramoyl-L-alanine amidase	A0A2P1JY73	Gordonia_phage	9.8e-70	54.1
ARB88560.1\|2054770_2055094_+	hypothetical protein	NA	NA	NA	NA
ARB89027.1\|2055099_2055564_+	hypothetical protein	A0A1W6JRF4	Corynebacterium_phage	2.5e-57	73.5
ARB88561.1\|2055560_2055899_+	hypothetical protein	A0A1W6JRH1	Corynebacterium_phage	1.2e-48	88.4
ARB88562.1\|2056248_2057931_+	toxin	A7UH54	Corynephage	0.0e+00	98.0
2058218:2058241	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage