CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP031884	Klebsiella pneumoniae strain WCHKP095845 plasmid pNDM1_095845, complete sequence	0 crisprs	cas3	0	1
CP031882	Klebsiella pneumoniae strain WCHKP095845 plasmid p1_095845, complete sequence	0 crisprs	NA	0	0
CP031885	Klebsiella pneumoniae strain WCHKP095845 chromosome, complete genome	2 crisprs	WYL,csa3,RT,cas3,DEDDh,DinG	1	8
CP031883	Klebsiella pneumoniae strain WCHKP095845 plasmid pMCR8_095845, complete sequence	0 crisprs	NA	0	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

50768 : 103274

Escherichia_phage(18.18%)

bacteriocin,transposase,coat

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU00359.1\|50768_51473_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXU00418.1\|51502_51778_+	hypothetical protein	NA	NA	NA	NA
AXU00360.1\|51833_52028_+	hypothetical protein	NA	NA	NA	NA
AXU00361.1\|51988_53518_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AXU00362.1\|53706_55347_-	chaperonin GroEL	A0A219YK78	uncultured_virus	8.2e-175	62.1
AXU00363.1\|55402_55693_-	co-chaperone GroES	A0A221S322	uncultured_virus	2.1e-17	47.8
AXU00364.1\|55886_56216_+	divalent-cation tolerance protein CutA	NA	NA	NA	NA
AXU00365.1\|56220_57252_+	twin-arginine translocation (TAT) pathway signal sequence domain protein	NA	NA	NA	NA
AXU00366.1\|57262_57901_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
AXU00367.1\|57905_58271_-	bleomycin binding protein Ble-MBL	NA	NA	NA	NA
AXU00368.1\|58274_59087_-	subclass B1 metallo-beta-lactamase NDM-1	NA	NA	NA	NA
AXU00419.1\|59340_59463_+	sugar kinase	Q6QLL3	Human_immunodeficiency_virus	2.5e-12	97.2
AXU00369.1\|59500_60517_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
AXU00370.1\|66313_66499_-	hypothetical protein	NA	NA	NA	NA
AXU00420.1\|66456_66669_-	hypothetical protein	NA	NA	NA	NA
AXU00371.1\|66731_67007_-	hypothetical protein	NA	NA	NA	NA
AXU00372.1\|67024_67279_-	hypothetical protein	NA	NA	NA	NA
AXU00373.1\|67388_68210_-	sprT domain-containing protein	NA	NA	NA	NA
AXU00374.1\|68206_68386_-	hypothetical protein	NA	NA	NA	NA
AXU00375.1\|68658_69309_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
AXU00376.1\|69346_69802_-	DNA-binding protein	NA	NA	NA	NA
AXU00377.1\|69813_72141_-	type IA DNA topoisomerase	A0A1X9I6W8	Streptococcus_phage	8.6e-37	28.1
AXU00378.1\|72144_73407_-	ATP-binding protein	A0A1V0SKF8	Klosneuvirus	1.3e-07	31.4
AXU00379.1\|73489_73984_-	micrococcal nuclease	A0A0R6PHV6	Moraxella_phage	8.0e-17	37.3
AXU00380.1\|73980_74307_-	hypothetical protein	NA	NA	NA	NA
AXU00381.1\|74392_74707_-	hypothetical protein	NA	NA	NA	NA
AXU00382.1\|74794_75187_-	conjugal transfer protein	NA	NA	NA	NA
AXU00383.1\|75183_77025_-	conjugal transfer protein TraG	NA	NA	NA	NA
AXU00384.1\|77021_78056_-	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA
AXU00385.1\|78052_78250_-	DNA-binding protein	NA	NA	NA	NA
AXU00386.1\|78251_79466_-	TrbI/VirB10 family protein	NA	NA	NA	NA
AXU00387.1\|79462_80392_-	conjugal transfer protein	NA	NA	NA	NA
AXU00388.1\|80397_81126_-	pilus assembly protein	NA	NA	NA	NA
AXU00389.1\|81320_82376_-	type IV secretion system protein	NA	NA	NA	NA
AXU00390.1\|82387_82645_-	hypothetical protein	NA	NA	NA	NA
AXU00391.1\|82654_83425_-	pilus assembly protein	NA	NA	NA	NA
AXU00392.1\|83434_86188_-	conjugal transfer protein	NA	NA	NA	NA
AXU00393.1\|86212_86503_-	hypothetical protein	NA	NA	NA	NA
AXU00394.1\|86486_87131_-	transglycosylase	NA	NA	NA	NA
AXU00395.1\|87176_87413_-	hypothetical protein	NA	NA	NA	NA
AXU00396.1\|87363_87873_-	transcription termination factor NusG	NA	NA	NA	NA
AXU00397.1\|88225_89386_-\|coat	spore coat protein CotH	NA	NA	NA	NA
AXU00421.1\|89388_89934_-	DNA distortion polypeptide 1	NA	NA	NA	NA
AXU00398.1\|90178_90394_+	hypothetical protein	NA	NA	NA	NA
AXU00399.1\|90767_91106_-	hypothetical protein	NA	NA	NA	NA
AXU00400.1\|91199_91442_-	hypothetical protein	NA	NA	NA	NA
AXU00401.1\|91431_91644_-	hypothetical protein	NA	NA	NA	NA
AXU00402.1\|91709_92261_-	hypothetical protein	NA	NA	NA	NA
AXU00403.1\|92320_92557_-	hypothetical protein	NA	NA	NA	NA
AXU00404.1\|92615_93131_-	molecular chaperone DnaJ	A0A2K9L588	Tupanvirus	3.3e-05	39.8
AXU00405.1\|94483_95497_+	replication initiation protein	NA	NA	NA	NA
AXU00422.1\|95505_95949_+	hypothetical protein	NA	NA	NA	NA
AXU00423.1\|96136_96490_+	DNA distortion polypeptide 3	NA	NA	NA	NA
AXU00406.1\|96510_96795_-	hypothetical protein	NA	NA	NA	NA
AXU00407.1\|96830_97142_-	hypothetical protein	NA	NA	NA	NA
AXU00408.1\|97347_97632_-	CopG family transcriptional regulator	NA	NA	NA	NA
AXU00409.1\|97731_98394_-	peptidyl-arginine deiminase	E5FFJ3	Burkholderia_phage	2.6e-07	25.2
AXU00424.1\|98774_99437_+	resolvase	M9Q1K0	Clostridium_phage	9.7e-10	29.1
AXU00410.1\|99525_100746_-\|transposase	ISL3-like element ISKox3 family transposase	NA	NA	NA	NA
AXU00411.1\|100952_103274_+\|bacteriocin	klebicin B-related nuclease bacteriocin	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP031885

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CRISPR-Cas detection and classification

Crispr_ID: CP031885_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031885_2

4136605-4136733

Orphan

Consensus_repeat	Method
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031885_2

>merge|CP031885|2|4136605-4136733|CRISPRCasFinder
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAAC

>CP031885|2|2|4136605-4136733|CRISPRCasFinder
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	CGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTA
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP031885.1\|AXU05374.1\|4127772_4129173_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297
CP031885.1\|AXU04253.1\|4140246_4141485_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
CP031885.1\|AXU04252.1\|4139459_4140254_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423
CP031885.1\|AXU04243.1\|4131802_4132261_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
CP031885.1\|AXU04242.1\|4130452_4131697_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
CP031885.1\|AXU04246.1\|4134473_4135529_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP031885.1\|AXU04239.1\|4126339_4127623_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236149
CP031885.1\|AXU04257.1\|4143954_4144722_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
CP031885.1\|AXU04247.1\|4135688_4136549_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
CP031885.1\|AXU04250.1\|4138225_4138822_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
CP031885.1\|AXU04249.1\|4136989_4138213_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
CP031885.1\|AXU04245.1\|4134018_4134471_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
CP031885.1\|AXU04255.1\|4142788_4142998_+\|hypothetical-protein	unknown	unknown	unknown
CP031885.1\|AXU04251.1\|4138828_4139467_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
CP031885.1\|AXU04254.1\|4141488_4142832_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	unknown	unknown	gnl\|CDD\|235426
CP031885.1\|AXU04244.1\|4132518_4133976_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
CP031885.1\|AXU04240.1\|4129218_4129911_+\|DNA-binding-transcriptional-regulator-CsiR	unknown	unknown	gnl\|CDD\|183181
CP031885.1\|AXU04248.1\|4136771_4136987_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
CP031885.1\|AXU04241.1\|4129996_4130395_-\|Crl-family-RNA-polymerase-assembly-factor	unknown	unknown	gnl\|CDD\|182882
CP031885.1\|AXU04256.1\|4143243_4143984_+\|transpeptidase	unknown	unknown	gnl\|CDD\|225577

Protein	Function_ID	Function_description	E-value
CP031885.1\|AXU05374.1\|4127772_4129173_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0
CP031885.1\|AXU04253.1\|4140246_4141485_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
CP031885.1\|AXU04252.1\|4139459_4140254_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.16359e-153
CP031885.1\|AXU04243.1\|4131802_4132261_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
CP031885.1\|AXU04242.1\|4130452_4131697_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
CP031885.1\|AXU04246.1\|4134473_4135529_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP031885.1\|AXU04239.1\|4126339_4127623_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0
CP031885.1\|AXU04257.1\|4143954_4144722_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.08772e-144
CP031885.1\|AXU04247.1\|4135688_4136549_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	1.90819e-128
CP031885.1\|AXU04250.1\|4138225_4138822_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127
CP031885.1\|AXU04249.1\|4136989_4138213_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
CP031885.1\|AXU04245.1\|4134018_4134471_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	3.92264e-85
CP031885.1\|AXU04251.1\|4138828_4139467_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	9.27315e-142
CP031885.1\|AXU04254.1\|4141488_4142832_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
CP031885.1\|AXU04244.1\|4132518_4133976_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
CP031885.1\|AXU04240.1\|4129218_4129911_+\|DNA-binding-transcriptional-regulator-CsiR	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	3.98097e-151
CP031885.1\|AXU04248.1\|4136771_4136987_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	5.41902e-29
CP031885.1\|AXU04241.1\|4129996_4130395_-\|Crl-family-RNA-polymerase-assembly-factor	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	3.74492e-83
CP031885.1\|AXU04256.1\|4143243_4143984_+\|transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109

>CP031885.1|AXU04247.1|4135688_4136549_+|glycerophosphodiester-phosphodiesterase
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSSLTAAELAKVDAGWKWGDDSHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRMAIELGADGVMVDSPAQAKSWQ
>CP031885.1|AXU04246.1|4134473_4135529_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>CP031885.1|AXU04245.1|4134018_4134471_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAVVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAARGEWFINYRMEKRVALR
>CP031885.1|AXU04244.1|4132518_4133976_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLVEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>CP031885.1|AXU04243.1|4131802_4132261_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>CP031885.1|AXU04242.1|4130452_4131697_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>CP031885.1|AXU04241.1|4129996_4130395_-|Crl-family-RNA-polymerase-assembly-factor
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIGDPEVSDRLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>CP031885.1|AXU04240.1|4129218_4129911_+|DNA-binding-transcriptional-regulator-CsiR
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARTHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>CP031885.1|AXU05374.1|4127772_4129173_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICTVPIMSRWKKLVLWQKLPLQNTR
>CP031885.1|AXU04239.1|4126339_4127623_+|4-aminobutyrate--2-oxoglutarate-transaminase
MNSNRAMMARRSDAVPRGVGQIHPIFAERAENCRVWDVEGREYLDFAGGIAVLNTGHLHPQVVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLQIFEQENLLEKANQLGDTLRQGLLAIAEDHPEIGDVRGLGAMIAIELFEEGDRSRPNARLTADIVARARDKGLILLSCGPYYNVLRILVPLTIEEAQIEQGLKIIADCFSEAKQA
>CP031885.1|AXU04248.1|4136771_4136987_-|(Na+)-NQR-maturation-NqrM
MLTVFIATFVIFALVILGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>CP031885.1|AXU04249.1|4136989_4138213_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>CP031885.1|AXU04250.1|4138225_4138822_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>CP031885.1|AXU04251.1|4138828_4139467_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDIKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>CP031885.1|AXU04252.1|4139459_4140254_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPDMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>CP031885.1|AXU04253.1|4140246_4141485_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGTEQLQQTIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYLTVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>CP031885.1|AXU04254.1|4141488_4142832_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>CP031885.1|AXU04255.1|4142788_4142998_+|hypothetical-protein
MPAMGKSSPFVILIISLAGIRNLNPDAGQGQLIDRMAEKKGRNGASSAQDGREASFLTLMMNRRKCNIS
>CP031885.1|AXU04256.1|4143243_4143984_+|transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>CP031885.1|AXU04257.1|4143954_4144722_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV

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Crispr_ID: CP031885_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031885_3

4353572-4353666

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031885_3

>merge|CP031885|3|4353572-4353666|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>CP031885|3|3|4353572-4353666|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
CP031885.1\|AXU04435.1\|4357224_4359573_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
CP031885.1\|AXU04432.1\|4353807_4355433_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
CP031885.1\|AXU04429.1\|4350665_4351325_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
CP031885.1\|AXU04438.1\|4361905_4362727_+\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
CP031885.1\|AXU04430.1\|4351399_4351939_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
CP031885.1\|AXU04431.1\|4352118_4353483_-\|malate-permease	unknown	unknown	gnl\|CDD\|377030
CP031885.1\|AXU04427.1\|4345201_4347559_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP031885.1\|AXU04428.1\|4347746_4350653_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
CP031885.1\|AXU04440.1\|4363111_4363960_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
CP031885.1\|AXU04437.1\|4360919_4361909_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
CP031885.1\|AXU05383.1\|4351901_4352090_+\|hypothetical-protein	unknown	unknown	unknown
CP031885.1\|AXU04423.1\|4339787_4340633_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
CP031885.1\|AXU04436.1\|4359627_4360914_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
CP031885.1\|AXU04441.1\|4364211_4364691_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
CP031885.1\|AXU04425.1\|4342690_4344193_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP031885.1\|AXU04439.1\|4362729_4363107_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP031885.1\|AXU04424.1\|4340970_4342680_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP031885.1\|AXU04426.1\|4344330_4345026_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP031885.1\|AXU04434.1\|4356153_4356981_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
CP031885.1\|AXU04433.1\|4355422_4356121_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931

Protein	Function_ID	Function_description	E-value
CP031885.1\|AXU04440.1\|4363111_4363960_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
CP031885.1\|AXU04435.1\|4357224_4359573_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
CP031885.1\|AXU04429.1\|4350665_4351325_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.90078e-161
CP031885.1\|AXU04438.1\|4361905_4362727_+\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
CP031885.1\|AXU04430.1\|4351399_4351939_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	1.45487e-85
CP031885.1\|AXU04431.1\|4352118_4353483_-\|malate-permease	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
CP031885.1\|AXU04427.1\|4345201_4347559_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP031885.1\|AXU04428.1\|4347746_4350653_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP031885.1\|AXU04437.1\|4360919_4361909_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP031885.1\|AXU04432.1\|4353807_4355433_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
CP031885.1\|AXU04423.1\|4339787_4340633_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
CP031885.1\|AXU04436.1\|4359627_4360914_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP031885.1\|AXU04441.1\|4364211_4364691_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
CP031885.1\|AXU04425.1\|4342690_4344193_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP031885.1\|AXU04439.1\|4362729_4363107_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
CP031885.1\|AXU04424.1\|4340970_4342680_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP031885.1\|AXU04426.1\|4344330_4345026_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
CP031885.1\|AXU04434.1\|4356153_4356981_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
CP031885.1\|AXU04433.1\|4355422_4356121_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	1.50146e-66

>CP031885.1|AXU04431.1|4352118_4353483_-|malate-permease
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>CP031885.1|AXU05383.1|4351901_4352090_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKCDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>CP031885.1|AXU04430.1|4351399_4351939_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVNIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>CP031885.1|AXU04429.1|4350665_4351325_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>CP031885.1|AXU04428.1|4347746_4350653_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>CP031885.1|AXU04427.1|4345201_4347559_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFNASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPADYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>CP031885.1|AXU04426.1|4344330_4345026_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>CP031885.1|AXU04425.1|4342690_4344193_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>CP031885.1|AXU04424.1|4340970_4342680_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLPQTVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGIYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>CP031885.1|AXU04423.1|4339787_4340633_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>CP031885.1|AXU04432.1|4353807_4355433_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>CP031885.1|AXU04433.1|4355422_4356121_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHTTPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>CP031885.1|AXU04434.1|4356153_4356981_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>CP031885.1|AXU04435.1|4357224_4359573_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>CP031885.1|AXU04436.1|4359627_4360914_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>CP031885.1|AXU04437.1|4360919_4361909_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDLDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>CP031885.1|AXU04438.1|4361905_4362727_+|ribosomal-RNA-small-subunit-methyltransferase-A
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>CP031885.1|AXU04439.1|4362729_4363107_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>CP031885.1|AXU04440.1|4363111_4363960_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>CP031885.1|AXU04441.1|4364211_4364691_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031885_1	1.1\|1913670\|30\|CP031885\|CRISPRCasFinder	1913670-1913699	30	NZ_CP022925	Klebsiella pneumoniae strain ST307PT01 plasmid pJYC01B	21741-21770	0	1.0

1. spacer 1.1|1913670|30|CP031885|CRISPRCasFinder matches to NZ_CP022925 (Klebsiella pneumoniae strain ST307PT01 plasmid pJYC01B) position: , mismatch: 0, identity: 1.0

gcattcggcataaacgccatatccaggatt	CRISPR spacer
gcattcggcataaacgccatatccaggatt	Protospacer
******************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1190460 : 1247072

Salmonella_phage(74.0%)

capsid,head,integrase,plate,tRNA,portal,tail,lysis

attL 1200092:1200136|attR 1235700:1235744

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU01555.1\|1190460_1192794_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	84.4
AXU01556.1\|1192808_1193129_-	hypothetical protein	NA	NA	NA	NA
AXU01557.1\|1193125_1193353_-	hypothetical protein	NA	NA	NA	NA
AXU01558.1\|1193349_1193901_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	3.0e-33	70.4
AXU01559.1\|1194713_1195451_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	6.9e-81	66.1
AXU01560.1\|1195447_1195693_+	hypothetical protein	Q7M294	Enterobacteria_phage	3.7e-31	77.8
AXU01561.1\|1195709_1196276_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.5e-56	63.8
AXU01562.1\|1196317_1196425_-	acetyl xylan esterase	NA	NA	NA	NA
AXU01563.1\|1196790_1198683_+	hypothetical protein	NA	NA	NA	NA
AXU01564.1\|1198719_1199907_-	DUF4102 domain-containing protein	A0A1B5FPC6	Escherichia_phage	2.4e-107	51.0
1200092:1200136	attL	NA	NA	NA	NA
AXU01565.1\|1200268_1201789_-	hypothetical protein	NA	NA	NA	NA
AXU01566.1\|1201801_1202815_-\|integrase	integrase	E5G6L0	Salmonella_phage	7.7e-192	95.5
AXU01567.1\|1202816_1203449_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	8.1e-107	91.0
AXU01568.1\|1203568_1203817_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	3.4e-24	71.6
AXU01569.1\|1203849_1204359_+	hypothetical protein	E5G6L3	Salmonella_phage	3.5e-84	96.4
AXU05240.1\|1204366_1204567_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	7.1e-33	98.5
AXU01570.1\|1204530_1204872_+	hypothetical protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
AXU01571.1\|1204939_1205173_+	DUF2732 family protein	E5G6L6	Salmonella_phage	6.4e-33	98.7
AXU01572.1\|1205172_1205400_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-36	100.0
AXU01573.1\|1205396_1206254_+	DNA adenine methylase	E5G6L8	Salmonella_phage	1.6e-161	97.5
AXU01574.1\|1206250_1208665_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	98.0
AXU01575.1\|1208818_1209007_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
AXU01576.1\|1208945_1209251_+	DinI family protein	E5G6M1	Salmonella_phage	1.1e-32	88.3
AXU01577.1\|1209491_1210640_+	DUF4297 domain-containing protein	NA	NA	NA	NA
AXU01578.1\|1210629_1212288_+	AAA family ATPase	NA	NA	NA	NA
AXU01579.1\|1212328_1213360_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	1.3e-170	87.7
AXU01580.1\|1213359_1215126_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.1
AXU01581.1\|1215268_1216102_+\|capsid	capsid protein	A0A1S6KZW9	Salmonella_phage	1.7e-123	89.2
AXU01582.1\|1216118_1217177_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	3.8e-181	93.4
AXU01583.1\|1217180_1217831_+	hypothetical protein	E5G6M7	Salmonella_phage	8.7e-112	96.3
AXU01584.1\|1217926_1218391_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
AXU01585.1\|1218390_1218591_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	7.4e-30	91.0
AXU01586.1\|1218594_1218810_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
AXU05241.1\|1218829_1219303_+	lysozyme	E5G6N1	Salmonella_phage	3.7e-80	91.0
AXU01587.1\|1219304_1219682_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	3.9e-16	40.0
AXU01588.1\|1219678_1220107_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	7.1e-46	75.9
AXU01589.1\|1220036_1220240_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	1.8e-23	76.1
AXU01590.1\|1220202_1220634_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.5e-72	95.1
AXU01591.1\|1220626_1221073_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	6.6e-63	85.6
AXU01592.1\|1221141_1221720_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	2.1e-93	85.9
AXU01593.1\|1221716_1222076_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	4.7e-51	86.6
AXU01594.1\|1222062_1222971_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	5.9e-143	90.4
AXU01595.1\|1222963_1223569_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.5
AXU01596.1\|1223565_1225116_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	3.4e-199	71.3
AXU01597.1\|1225115_1225718_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	2.5e-97	90.5
AXU01598.1\|1225689_1226130_-\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	2.3e-52	68.0
AXU01599.1\|1226132_1226531_-\|tail	phage tail protein	A0A0F7LBW5	Escherichia_phage	1.3e-12	38.3
AXU01600.1\|1226558_1227125_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	4.2e-86	85.7
AXU01601.1\|1227267_1228440_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-202	89.7
AXU01602.1\|1228449_1228965_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	4.8e-89	94.7
AXU01603.1\|1229019_1229322_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
AXU01604.1\|1229336_1229456_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
AXU01605.1\|1229448_1232526_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.2
AXU01606.1\|1232522_1233008_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.7e-67	81.2
AXU01607.1\|1233004_1234105_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	5.5e-175	87.2
AXU01608.1\|1234195_1234414_+	transcriptional regulator	Q53ZE7	Salmonella_virus	1.9e-18	71.9
AXU01609.1\|1234817_1235591_+	reverse transcriptase	NA	NA	NA	NA
AXU01610.1\|1236206_1236689_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
1235700:1235744	attR	NA	NA	NA	NA
AXU01611.1\|1236799_1237276_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
AXU01612.1\|1237265_1237556_+	RnfH family protein	NA	NA	NA	NA
AXU01613.1\|1237622_1237964_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AXU01614.1\|1238111_1239773_-	DNA repair protein RecN	NA	NA	NA	NA
AXU01615.1\|1239859_1240738_-	NAD(+) kinase	NA	NA	NA	NA
AXU01616.1\|1240862_1241453_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
AXU01617.1\|1241572_1242859_-	DUF21 domain-containing protein	NA	NA	NA	NA
AXU01618.1\|1242878_1243670_-	inner membrane protein YpjD	NA	NA	NA	NA
AXU01619.1\|1243833_1245198_+	signal recognition particle protein	NA	NA	NA	NA
AXU01620.1\|1245457_1245706_+	30S ribosomal protein S16	NA	NA	NA	NA
AXU01621.1\|1245724_1246273_+	ribosome maturation factor RimM	NA	NA	NA	NA
AXU01622.1\|1246304_1247072_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_2

1351820 : 1395036

Salmonella_phage(33.33%)

transposase,holin,integrase,tail,terminase

attL 1349247:1349262|attR 1376655:1376670

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1349247:1349262	attL	NA	NA	NA	NA
AXU01711.1\|1351820_1353287_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
AXU01712.1\|1353354_1354932_+	GMP synthase (glutamine-hydrolyzing)	NA	NA	NA	NA
AXU01713.1\|1355123_1356374_+\|integrase	site-specific integrase	A0A1X9TCT6	Enterobacter_phage	6.8e-206	85.1
AXU01714.1\|1356390_1356582_-	hypothetical protein	NA	NA	NA	NA
AXU01715.1\|1356578_1357172_-	adenine methylase	T1SA14	Salmonella_phage	3.7e-109	91.4
AXU01716.1\|1357168_1357327_-	DUF1317 family protein	T1SAR0	Salmonella_phage	5.1e-18	80.8
AXU01717.1\|1357319_1357613_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	8.9e-32	71.1
AXU01718.1\|1357722_1357971_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	2.8e-31	78.0
AXU01719.1\|1358019_1358901_-	recombinase RecT	T1SBJ5	Salmonella_phage	6.8e-136	84.3
AXU01720.1\|1358897_1359719_-	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	6.2e-131	80.6
AXU01721.1\|1359718_1360003_-	hypothetical protein	B5WZV1	Pseudomonas_phage	2.4e-10	44.0
AXU01722.1\|1359999_1360299_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	4.7e-20	54.5
AXU05244.1\|1360306_1361338_-	hypothetical protein	A0A1B0VN89	Pseudomonas_phage	3.6e-35	51.4
AXU01723.1\|1361738_1362320_-	XRE family transcriptional regulator	Q858D7	Salmonella_phage	2.1e-64	64.3
AXU01724.1\|1362473_1362707_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
AXU01725.1\|1362853_1363063_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.4e-26	78.3
AXU01726.1\|1363062_1363824_+	primosomal protein	A0A193GZ86	Enterobacter_phage	1.6e-136	90.2
AXU01727.1\|1363820_1364606_+	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
AXU01728.1\|1364725_1365073_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	1.7e-50	83.5
AXU05245.1\|1365265_1365805_+	hypothetical protein	R9TME7	Aeromonas_phage	1.5e-08	41.9
AXU01729.1\|1366081_1366843_+	ead/Ea22-like family protein	C6ZR30	Salmonella_phage	6.8e-07	65.2
AXU01730.1\|1366839_1367019_+	hypothetical protein	NA	NA	NA	NA
AXU01731.1\|1367015_1367759_+	hypothetical protein	K7P7E4	Enterobacteria_phage	3.3e-14	56.6
AXU01732.1\|1367843_1368083_+	hypothetical protein	G8C7S3	Escherichia_phage	1.9e-08	51.7
AXU01733.1\|1368082_1368319_+	hypothetical protein	NA	NA	NA	NA
AXU01734.1\|1368311_1368650_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.9e-49	88.2
AXU05246.1\|1368724_1368982_+	lF-82	NA	NA	NA	NA
AXU01735.1\|1369059_1369644_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	1.3e-90	89.1
AXU01736.1\|1369640_1371116_+\|terminase	terminase	Q858H3	Salmonella_phage	1.9e-279	92.5
AXU01737.1\|1371127_1371400_-	hypothetical protein	NA	NA	NA	NA
AXU01738.1\|1371485_1371851_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	5.1e-61	95.9
AXU01739.1\|1372342_1372531_+	hypothetical protein	NA	NA	NA	NA
AXU01740.1\|1372550_1372757_+	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
AXU01741.1\|1372771_1374454_+\|tail	phage tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	2.5e-264	84.4
AXU01742.1\|1374450_1374747_+	hypothetical protein	T1SBI9	Salmonella_phage	9.6e-34	70.4
AXU01743.1\|1374749_1375439_+	peptidase	G9L6C4	Escherichia_phage	2.9e-65	69.6
AXU01744.1\|1375453_1376440_+	hypothetical protein	A0A193GZ49	Enterobacter_phage	3.3e-179	93.6
AXU01745.1\|1376493_1376931_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.3e-66	91.7
1376655:1376670	attR	NA	NA	NA	NA
AXU01746.1\|1376941_1377283_+	hypothetical protein	G9L6C7	Escherichia_phage	1.1e-36	71.9
AXU01747.1\|1377333_1377657_+	hypothetical protein	G9L6C8	Escherichia_phage	5.3e-46	85.0
AXU01748.1\|1377656_1378262_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	3.3e-89	79.0
AXU01749.1\|1378261_1380739_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.2
AXU01750.1\|1380738_1381203_+	hypothetical protein	Q858G2	Salmonella_phage	1.5e-70	81.2
AXU01751.1\|1381202_1381742_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	3.0e-70	79.4
AXU01752.1\|1381752_1384566_+	hypothetical protein	T1SBJ1	Salmonella_phage	0.0e+00	93.3
AXU01753.1\|1384562_1386368_+	hypothetical protein	A0A0F6TJQ3	Escherichia_coli_O157_typing_phage	1.7e-237	73.3
AXU01754.1\|1386371_1388846_+	hypothetical protein	A0A0F6TK45	Escherichia_coli_O157_typing_phage	0.0e+00	87.0
AXU01755.1\|1389044_1389341_+	hypothetical protein	A0A2R9YJP3	Escherichia_phage	4.4e-47	94.8
AXU01756.1\|1389375_1389528_-	transmembrane anchored protein	G9L6D9	Escherichia_phage	3.3e-14	83.7
AXU05247.1\|1389626_1389887_-	hypothetical protein	A0A0F6R8M4	Escherichia_coli_O157_typing_phage	2.1e-24	64.0
AXU01757.1\|1389986_1391207_+\|transposase	ISL3-like element ISKox3 family transposase	NA	NA	NA	NA
AXU01758.1\|1393755_1394004_+	hypothetical protein	NA	NA	NA	NA
AXU01759.1\|1394339_1394744_+	hypothetical protein	T1SA79	Salmonella_phage	9.3e-56	84.1
AXU01760.1\|1394730_1395036_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	7.8e-39	80.4

DBSCAN-SWA_3

1737542 : 1744449

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU05260.1\|1737542_1738406_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.8e-09	27.0
AXU02054.1\|1738416_1739190_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
AXU05261.1\|1739432_1740326_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
AXU02055.1\|1740571_1741933_-	U32 family peptidase	Q6DW11	Phage_TP	1.8e-207	94.8
AXU02056.1\|1742251_1742974_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
AXU02057.1\|1742970_1744449_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_4

1786013 : 1794409

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU02084.1\|1786013_1787420_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.6e-38	28.9
AXU02085.1\|1787661_1788726_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.4e-104	54.1
AXU02086.1\|1788752_1789622_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	7.5e-111	67.0
AXU02087.1\|1789653_1790544_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	34.2
AXU02088.1\|1790558_1791113_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
AXU02089.1\|1791293_1792460_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	54.7
AXU02090.1\|1793404_1794409_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.0e-31	29.5

DBSCAN-SWA_5

1899951 : 1984416

100

Enterobacteria_phage(21.05%)

capsid,holin,head,tRNA,portal,tail,protease,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU02187.1\|1899951_1901685_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	1.4e-87	33.8
AXU02188.1\|1901920_1902490_+	VOC family protein	NA	NA	NA	NA
AXU02189.1\|1902566_1903310_+	copper homeostasis protein CutC	NA	NA	NA	NA
AXU02190.1\|1903391_1904396_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
AXU02191.1\|1904392_1905136_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.1e-25	30.0
AXU02192.1\|1905175_1905571_-	hypothetical protein	NA	NA	NA	NA
AXU02193.1\|1905623_1906403_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	1.1e-60	82.7
AXU02194.1\|1906399_1907659_-	DUF3596 domain-containing protein	A0A286S1S8	Klebsiella_phage	2.1e-223	90.2
AXU02195.1\|1907701_1907947_-	excisionase	A0A286S2A4	Klebsiella_phage	1.4e-35	92.1
AXU02196.1\|1908080_1908374_-	hypothetical protein	A0A1U8QJU8	Salmonella_virus	9.8e-23	58.3
AXU02197.1\|1908370_1909018_-	hypothetical protein	R9VWB9	Serratia_phage	5.1e-56	52.6
AXU02198.1\|1909010_1909355_-	hypothetical protein	NA	NA	NA	NA
AXU02199.1\|1909351_1909576_-	hypothetical protein	A0A286S2B3	Klebsiella_phage	1.5e-18	60.8
AXU02200.1\|1909572_1909800_-	hypothetical protein	A0A291LBA3	Klebsiella_phage	8.1e-09	46.8
AXU02201.1\|1910101_1910395_-	host cell division inhibitory peptide Kil	NA	NA	NA	NA
AXU02202.1\|1910585_1910774_-	hypothetical protein	NA	NA	NA	NA
AXU02203.1\|1911447_1912080_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	6.4e-35	36.9
AXU02204.1\|1912178_1912400_+	helix-turn-helix domain-containing protein	Q716D6	Shigella_phage	8.2e-14	55.7
AXU02205.1\|1912439_1912760_+	hypothetical protein	A0A0M4RU01	Salmonella_phage	5.0e-36	68.9
AXU02206.1\|1912955_1913210_+	hypothetical protein	NA	NA	NA	NA
AXU02207.1\|1913206_1914256_+	hypothetical protein	K7PLZ7	Enterobacterial_phage	2.7e-30	51.5
AXU02208.1\|1914282_1914678_+	hypothetical protein	NA	NA	NA	NA
AXU02209.1\|1914677_1914899_+	hypothetical protein	NA	NA	NA	NA
AXU02210.1\|1914891_1915683_+	hypothetical protein	A4JX52	Burkholderia_virus	5.3e-63	51.7
AXU02211.1\|1915675_1916308_+	ead/Ea22-like family protein	K7PJQ4	Enterobacteria_phage	9.0e-05	40.2
AXU02212.1\|1916471_1917071_+	DUF551 domain-containing protein	G9L6B4	Escherichia_phage	2.7e-19	59.5
AXU05272.1\|1917070_1917259_+	hypothetical protein	R9TNE4	Aeromonas_phage	4.7e-18	72.9
AXU02213.1\|1917331_1917601_+	hypothetical protein	H6WRY4	Salmonella_phage	3.5e-35	80.7
AXU02214.1\|1917842_1918151_+	DUF968 domain-containing protein	Q6V7S4	Burkholderia_virus	1.6e-23	57.6
AXU02215.1\|1918143_1918788_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	3.6e-102	81.0
AXU02216.1\|1918784_1919384_+	hypothetical protein	H9C175	Pectobacterium_phage	1.1e-65	58.4
AXU02217.1\|1920086_1920356_+\|holin	holin	K7P6H9	Enterobacteria_phage	2.8e-32	78.3
AXU05273.1\|1920333_1920831_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	9.6e-79	83.6
AXU02218.1\|1920827_1921217_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	1.5e-23	50.0
AXU02219.1\|1921209_1921359_+	Rz1 lytic protein	S5FXQ4	Shigella_phage	1.1e-09	71.4
AXU02220.1\|1921482_1921803_+	hypothetical protein	NA	NA	NA	NA
AXU02221.1\|1921805_1922156_+	HNH endonuclease	K7PHK9	Enterobacteria_phage	1.2e-51	80.2
AXU02222.1\|1922313_1922811_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	1.1e-61	72.1
AXU02223.1\|1922810_1924568_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	91.1
AXU02224.1\|1924578_1924764_+	hypothetical protein	Q8HAD5	Salmonella_phage	6.2e-15	61.7
AXU02225.1\|1924763_1925993_+\|portal	phage portal protein	U5P411	Shigella_phage	8.2e-204	82.4
AXU02226.1\|1925979_1926633_+\|head,protease	HK97 family phage prohead protease	Q8W628	Enterobacteria_phage	7.1e-106	87.9
AXU02227.1\|1926647_1927856_+\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	2.2e-193	84.8
AXU02228.1\|1927894_1928098_+	hypothetical protein	M1FN89	Enterobacteria_phage	2.3e-07	42.4
AXU02229.1\|1928094_1928415_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	1.7e-15	39.8
AXU02230.1\|1928423_1928762_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.4e-41	74.1
AXU02231.1\|1928758_1929208_+	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	9.7e-62	81.9
AXU02232.1\|1929204_1929552_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	8.0e-32	62.8
AXU02233.1\|1929608_1930313_+\|tail	phage tail protein	K7PHL2	Enterobacterial_phage	5.5e-80	66.9
AXU02234.1\|1930343_1930748_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	8.5e-33	57.7
AXU02235.1\|1930750_1931056_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	4.7e-28	64.6
AXU02236.1\|1931129_1931363_+	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
AXU02237.1\|1931423_1934810_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	1.5e-303	57.9
AXU02238.1\|1934830_1935304_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.6e-54	61.4
AXU02239.1\|1935290_1935776_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	3.0e-53	66.2
AXU02240.1\|1935785_1936166_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	2.1e-57	80.2
AXU02241.1\|1936162_1939237_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	70.6
AXU02242.1\|1941381_1941633_+	hypothetical protein	NA	NA	NA	NA
AXU02243.1\|1941894_1943436_+	hypothetical protein	NA	NA	NA	NA
AXU02244.1\|1943443_1944667_-	hypothetical protein	NA	NA	NA	NA
AXU02245.1\|1945044_1945284_+	hypothetical protein	K7P7N3	Enterobacteria_phage	3.0e-22	63.3
AXU02246.1\|1945508_1946075_-	hydrolase	NA	NA	NA	NA
AXU02247.1\|1946342_1948130_+\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.3e-11	27.2
AXU02248.1\|1948131_1948575_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
AXU02249.1\|1948602_1949343_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
AXU02250.1\|1949377_1949899_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	3.4e-10	35.1
AXU02251.1\|1949978_1950590_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
AXU02252.1\|1950598_1951609_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	1.4e-07	24.3
AXU02253.1\|1951672_1952458_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
AXU02254.1\|1952457_1953210_-	zinc ABC transporter ATP-binding protein ZnuC	W6JKT0	Anomala_cuprea_entomopoxvirus	6.7e-15	32.4
AXU02255.1\|1953288_1954233_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
AXU02256.1\|1954248_1955568_+	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	5.3e-15	38.2
AXU02257.1\|1955685_1956660_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
AXU02258.1\|1956700_1958143_-	pyruvate kinase	NA	NA	NA	NA
AXU05274.1\|1958268_1959138_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AXU02259.1\|1959173_1959362_-	hypothetical protein	NA	NA	NA	NA
AXU02260.1\|1959333_1959483_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA
AXU02261.1\|1959493_1960969_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	3.2e-77	36.8
AXU02262.1\|1961191_1963003_+	phosphogluconate dehydratase	NA	NA	NA	NA
AXU02263.1\|1963041_1963683_+	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA
AXU02264.1\|1963740_1964919_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
AXU02265.1\|1965063_1965411_+	LexA family transcriptional regulator	NA	NA	NA	NA
AXU02266.1\|1965550_1966210_+	tellurite resistance TerB family protein	NA	NA	NA	NA
AXU02267.1\|1966330_1968391_+	oligopeptidase B	NA	NA	NA	NA
AXU02268.1\|1968394_1969054_-	exodeoxyribonuclease X	A0A0H4IT92	Pseudoalteromonas_phage	4.9e-14	31.2
AXU02269.1\|1969132_1969363_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	5.9e-15	57.4
AXU02270.1\|1969475_1969850_+	CopC domain-containing protein YobA	NA	NA	NA	NA
AXU02271.1\|1969853_1970723_+	hypothetical protein	NA	NA	NA	NA
AXU05275.1\|1970736_1971078_+	DUF2511 domain-containing protein	NA	NA	NA	NA
AXU02272.1\|1971962_1972967_-	DUF535 domain-containing protein	NA	NA	NA	NA
AXU02273.1\|1973087_1973741_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	3.0e-56	50.2
AXU02274.1\|1973737_1973929_-	DUF1482 family protein	NA	NA	NA	NA
AXU02275.1\|1974026_1974266_-	DUF1480 family protein	NA	NA	NA	NA
AXU02276.1\|1974381_1975815_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AXU02277.1\|1975938_1978572_-	PqiB family protein	NA	NA	NA	NA
AXU02278.1\|1978540_1979824_-	paraquat-inducible protein A	NA	NA	NA	NA
AXU02279.1\|1979956_1980454_+	GAF domain-containing protein	NA	NA	NA	NA
AXU02280.1\|1980551_1981229_+	RNA chaperone ProQ	NA	NA	NA	NA
AXU02281.1\|1981248_1983297_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	3.0e-86	33.3
AXU02282.1\|1983531_1984416_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_6

2743058 : 2753946

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU02996.1\|2743058_2746166_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
AXU02997.1\|2747516_2748605_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	2.0e-209	99.4
AXU02998.1\|2748691_2748952_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
AXU02999.1\|2749249_2750110_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
AXU03000.1\|2750130_2750892_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AXU03001.1\|2750882_2751116_+	hypothetical protein	NA	NA	NA	NA
AXU03002.1\|2751153_2752056_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.5e-157	98.3
AXU03003.1\|2752067_2753333_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.5e-232	99.0
AXU03004.1\|2753325_2753946_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_7

3407765 : 3417229

Brazilian_cedratvirus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU03604.1\|3407765_3409487_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
AXU03605.1\|3409531_3410233_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AXU03606.1\|3410586_3410805_+	translation initiation factor IF-1	NA	NA	NA	NA
AXU03607.1\|3410925_3413205_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
AXU03608.1\|3413235_3413553_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
AXU03609.1\|3413878_3414100_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
AXU03610.1\|3414054_3414237_-	hypothetical protein	NA	NA	NA	NA
AXU03611.1\|3414176_3416117_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	7.2e-37	40.5
AXU03612.1\|3416113_3417229_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_8

4594103 : 4606135

Enterobacteria_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU04636.1\|4594103_4595369_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	5.8e-80	40.3
AXU04637.1\|4596111_4598445_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.7
AXU04638.1\|4598458_4598779_-	hypothetical protein	NA	NA	NA	NA
AXU04639.1\|4598775_4599003_-	hypothetical protein	NA	NA	NA	NA
AXU04640.1\|4598999_4599551_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	4.9e-31	66.7
AXU04641.1\|4600374_4601112_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	1.9e-70	60.1
AXU04642.1\|4601108_4601354_+	hypothetical protein	Q7M294	Enterobacteria_phage	5.0e-20	59.3
AXU04643.1\|4601371_4601938_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	3.9e-60	64.9
AXU04644.1\|4602003_4602219_+	hypothetical protein	NA	NA	NA	NA
AXU04645.1\|4602334_4604743_-	hypothetical protein	NA	NA	NA	NA
AXU04646.1\|4604863_4606135_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.1e-73	40.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP031883

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5114 : 50402

Escherichia_phage(46.15%)

integrase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXU00185.1\|5114_6038_+\|transposase	IS5-like element IS903B family transposase	Q9MCT5	Escherichia_phage	2.2e-177	100.0
AXU00186.1\|6144_6888_+	DUF3471 domain-containing protein	NA	NA	NA	NA
AXU00187.1\|7174_7645_-	DNA gyrase inhibitor	NA	NA	NA	NA
AXU00188.1\|8116_9049_+	MipA/OmpV family protein	NA	NA	NA	NA
AXU00305.1\|9123_10149_+	class A beta-lactamase-related serine hydrolase	NA	NA	NA	NA
AXU00189.1\|10168_10525_+	hypothetical protein	NA	NA	NA	NA
AXU00190.1\|10548_11082_+	DUF2975 domain-containing protein	NA	NA	NA	NA
AXU00191.1\|11083_11293_+	transcriptional regulator	NA	NA	NA	NA
AXU00192.1\|11490_12390_+	glycosyl transferase	NA	NA	NA	NA
AXU00193.1\|12837_13227_-	diacylglycerol kinase	NA	NA	NA	NA
AXU00194.1\|13340_14570_-	sensor histidine kinase	NA	NA	NA	NA
AXU00195.1\|14591_15287_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.7e-25	32.0
AXU00306.1\|15323_16531_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	7.5e-101	63.2
AXU00196.1\|16738_18436_+	phosphoethanolamine--lipid A transferase MCR-8.2	NA	NA	NA	NA
AXU00197.1\|19481_20462_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	3.0e-185	99.1
AXU00307.1\|20500_20647_-	ABC transporter	NA	NA	NA	NA
AXU00308.1\|20903_21584_-	hypothetical protein	NA	NA	NA	NA
AXU00198.1\|21877_22906_-	hypothetical protein	NA	NA	NA	NA
AXU00199.1\|23066_23648_-	hypothetical protein	NA	NA	NA	NA
AXU00200.1\|24190_24541_+	hypothetical protein	NA	NA	NA	NA
AXU00201.1\|24591_25335_+	hypothetical protein	NA	NA	NA	NA
AXU00202.1\|25331_26108_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.4e-53	92.9
AXU00203.1\|26165_26423_-	hypothetical protein	NA	NA	NA	NA
AXU00204.1\|27185_28052_+	RepB family plasmid replication initiator protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
AXU00205.1\|28228_28498_-	hypothetical protein	NA	NA	NA	NA
AXU00206.1\|28912_30118_+	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
AXU00207.1\|30114_31092_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	5.0e-87	54.1
AXU00208.1\|31173_32445_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	5.4e-150	63.7
AXU00209.1\|32444_32876_-	peptidase	A0A1W6JNS2	Morganella_phage	1.6e-29	53.3
AXU00210.1\|33033_33285_+	hypothetical protein	NA	NA	NA	NA
AXU00211.1\|36023_36503_+	hypothetical protein	NA	NA	NA	NA
AXU00212.1\|36578_36878_+	hypothetical protein	NA	NA	NA	NA
AXU00213.1\|37235_38159_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.8e-171	96.4
AXU00214.1\|38298_38685_-	hypothetical protein	NA	NA	NA	NA
AXU00309.1\|41286_41679_+	cysteine hydrolase	NA	NA	NA	NA
AXU00215.1\|41816_42701_+	EamA family transporter	NA	NA	NA	NA
AXU00216.1\|42732_43932_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
AXU00217.1\|44010_44688_+	TetR family transcriptional regulator	NA	NA	NA	NA
AXU00218.1\|44719_44962_-	relaxase	NA	NA	NA	NA
AXU00219.1\|45267_46104_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
AXU00220.1\|46103_46907_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
AXU00221.1\|46967_47783_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	3.5e-09	27.6
AXU00222.1\|48090_48942_-	replication protein	NA	NA	NA	NA
AXU00223.1\|48928_49636_-	hypothetical protein	NA	NA	NA	NA
AXU00224.1\|49697_50402_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

70542 : 77617

Escherichia_phage(50.0%)

integrase

attL 68938:68950|attR 75722:75734

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
68938:68950	attL	NA	NA	NA	NA
AXU00249.1\|70542_71337_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.5e-52	88.7
AXU00250.1\|71800_71980_-	Par-like protein	NA	NA	NA	NA
AXU00251.1\|72099_72726_-	cobyrinic acid ac-diamide synthase	A0A222YXS3	Escherichia_phage	2.9e-40	43.6
AXU00252.1\|73422_74298_-	replication initiation protein	Q71TL8	Escherichia_phage	5.6e-82	56.4
AXU00253.1\|74709_75981_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	5.2e-153	64.0
75722:75734	attR	NA	NA	NA	NA
AXU00254.1\|75980_76412_-	peptidase	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
AXU00255.1\|76645_77617_+	StbA family protein	A0A222YXF2	Escherichia_phage	1.1e-73	46.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031884

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP031885

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP031883

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection