CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP017968	Paenibacillus polymyxa strain YC0573 chromosome, complete genome	4 crisprs	WYL,csa3,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG	1	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP017968_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP017968_1

2409761-2411284

orTypeI

NA:I-C

Consensus_repeat	Method
GTCGCACTCTATAT-GAGTGCGTGGATTGAAAT	PILER-CR
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CRT

22 spacers

cas3,cas5,cas8c,cas7,cas4,cas1,cas2

The CRISPR arrays of CP017968_1

>merge|CP017968|1|2409761-2411284|PILER-CR,CRISPRCasFinder,CRT
GTCGCACTCTATATGAGTGCGTGGATTGAAATTTCGCTAGTTCGGACGGGGAACAGATTTGGGATAAGGGTCGCACTCTATATGAGTGCGTGGATTGAAATAATCAATCCCTGGCGTGCAGAAGAATAATTGACCTGGGTCGCACTCTATATGAGTGCGTGGATTGAAATAAGTCAGCCACTGAAATATTCGATACTACGACTGCCAGTCGCACTCTATATGAGTGCGTGGATTGAAATAGACCATCAGGAACGTCCATCAAAAGCATCCTGACGCTGGTCGCACTCTATATGAGTGCGTGGATTGAAATACAGATGAACTCACCATGTCGGCTATCCTTGTATAAAGTCGCACTCTATATGAGTGCGTGGATTGAAATAACCCTATACGAAGAAATATTGAAAATAGTGCGGTCGCACTCTATATGAGTGCGTGGATTGAAATGTCTTCGAACCATTGATGGCTTGTCTGCGTGACGGCGTCGCACTCTATATGAGTGCGTGGATTGAAATCACTTCGCAATCTCGGTATATACAACGTTGGATGGTCGCACTCTATATGAGTGCGTGGATTGAAATCAGTAAACTGTTCATATGCATACCGGAGTGTTGTTGTCGCACTCTATATGAGTGCGTGGATTGAAATAAAATGCAGTTATCTGCTTTTACCTAGCGAACGAACTGGTCGCACTCTATATGAGTGCGTGGATTGAAATAACGGCGCAGTCGCAAGCGTGCGGAGATACGAAGAGTCGCACTCTATATGAGTGCGTGGATTGAAATGACAGGCTGGCTTGTGTATCCGTCTCACGGTGAGCAGGTCGCACTCTATATGAGTGCGTGGATTGAAATTTGATGGACAAAGGCATCATCACAGGTGAAGCGAGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATCTCGATCACGTAAAGAAACACGCTCACACCGAGCGTGTCGCACTCTATATGAGTGCGTGGATTGAAATTTATCCCCTATGGGGCTTAATCCGTTATGCCTGGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATCTACTAAACGGAAGTGCATAGTGTACTCATTATTGGTCGCACTCTATATGAGTGCGTGGATTGAAATAGATTCCGGTACGCCATAGTCGGAAGACAGATACTGTCGCACTCTATATGAGTGCGTGGATTGAAATCATCAGCCAACGCTATGATCTCGCCTGTATCTTGTGGCACTCTATATGAGTGCGTGGATTGAAATCCTCGTGCGGCCTGTAAAAACCGATATAACGAGGGTCAAGTCGCACTCTATATGAGTGCGTGGATTGAAATGTAATGGTCCCTTAGCGCTTTGTCGTTGAAGTCAGTGTCGCACTCTATATGAGTGAGTGGATTGAAATGCATTACCCTCCCAGTAATCCATCGTAAACACAGTCGCACTTTATATGAGTGCGTGGATTGAAATTCTGACAAATGTTAATTAAGCAATGCCTCACATGTCGTACTCTATACGAGTATGTGGATTGAAGT

>CP017968|1|1|2409761-2411219|PILER-CR
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTCGCTAGTTCGGACGGGGAACAGATTTGGGATAAGG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AATCAATCCCTGGCGTGCAGAAGAATAATTGACCTGG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AAGTCAGCCACTGAAATATTCGATACTACGACTGCCA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AGACCATCAGGAACGTCCATCAAAAGCATCCTGACGCTG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	ACAGATGAACTCACCATGTCGGCTATCCTTGTATAAA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AACCCTATACGAAGAAATATTGAAAATAGTGCG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	GTCTTCGAACCATTGATGGCTTGTCTGCGTGACGGC
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CACTTCGCAATCTCGGTATATACAACGTTGGATG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CAGTAAACTGTTCATATGCATACCGGAGTGTTGTT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AAAATGCAGTTATCTGCTTTTACCTAGCGAACGAACTG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AACGGCGCAGTCGCAAGCGTGCGGAGATACGAAGA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	GACAGGCTGGCTTGTGTATCCGTCTCACGGTGAGCAG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTGATGGACAAAGGCATCATCACAGGTGAAGCGAGCA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CTCGATCACGTAAAGAAACACGCTCACACCGAGCGT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTATCCCCTATGGGGCTTAATCCGTTATGCCTGGCA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CTACTAAACGGAAGTGCATAGTGTACTCATTATTG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AGATTCCGGTACGCCATAGTCGGAAGACAGATACT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CATCAGCCAACGCTATGATCTCGCCTGTATCTT
GTGGCACTCTATATGAGTGCGTGGATTGAAAT	CCTCGTGCGGCCTGTAAAAACCGATATAACGAGGGTCAA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	GTAATGGTCCCTTAGCGCTTTGTCGTTGAAGTCAGT
GTCGCACTCTATATGAGTGAGTGGATTGAAAT	GCATTACCCTCCCAGTAATCCATCGTAAACACA
GTCGCACTTTATATGAGTGCGTGGATTGAAAT

>CP017968|1|1|2409761-2411284|CRISPRCasFinder
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTCGCTAGTTCGGACGGGGAACAGATTTGGGATAAGG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AATCAATCCCTGGCGTGCAGAAGAATAATTGACCTGG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AAGTCAGCCACTGAAATATTCGATACTACGACTGCCA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AGACCATCAGGAACGTCCATCAAAAGCATCCTGACGCTG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	ACAGATGAACTCACCATGTCGGCTATCCTTGTATAAA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AACCCTATACGAAGAAATATTGAAAATAGTGCG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	GTCTTCGAACCATTGATGGCTTGTCTGCGTGACGGC
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CACTTCGCAATCTCGGTATATACAACGTTGGATG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CAGTAAACTGTTCATATGCATACCGGAGTGTTGTT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AAAATGCAGTTATCTGCTTTTACCTAGCGAACGAACTG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AACGGCGCAGTCGCAAGCGTGCGGAGATACGAAGA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	GACAGGCTGGCTTGTGTATCCGTCTCACGGTGAGCAG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTGATGGACAAAGGCATCATCACAGGTGAAGCGAGCA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CTCGATCACGTAAAGAAACACGCTCACACCGAGCGT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTATCCCCTATGGGGCTTAATCCGTTATGCCTGGCA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CTACTAAACGGAAGTGCATAGTGTACTCATTATTG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AGATTCCGGTACGCCATAGTCGGAAGACAGATACT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CATCAGCCAACGCTATGATCTCGCCTGTATCTT
GTGGCACTCTATATGAGTGCGTGGATTGAAAT	CCTCGTGCGGCCTGTAAAAACCGATATAACGAGGGTCAA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	GTAATGGTCCCTTAGCGCTTTGTCGTTGAAGTCAGT
GTCGCACTCTATATGAGTGAGTGGATTGAAAT	GCATTACCCTCCCAGTAATCCATCGTAAACACA
GTCGCACTTTATATGAGTGCGTGGATTGAAAT	TCTGACAAATGTTAATTAAGCAATGCCTCACAT
GTCGTACTCTATACGAGTATGTGGATTGAAGT

>CP017968|1|1|2409761-2411284|CRT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTCGCTAGTTCGGACGGGGAACAGATTTGGGATAAGG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AATCAATCCCTGGCGTGCAGAAGAATAATTGACCTGG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AAGTCAGCCACTGAAATATTCGATACTACGACTGCCA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AGACCATCAGGAACGTCCATCAAAAGCATCCTGACGCTG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	ACAGATGAACTCACCATGTCGGCTATCCTTGTATAAA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AACCCTATACGAAGAAATATTGAAAATAGTGCG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	GTCTTCGAACCATTGATGGCTTGTCTGCGTGACGGC
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CACTTCGCAATCTCGGTATATACAACGTTGGATG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CAGTAAACTGTTCATATGCATACCGGAGTGTTGTT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AAAATGCAGTTATCTGCTTTTACCTAGCGAACGAACTG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AACGGCGCAGTCGCAAGCGTGCGGAGATACGAAGA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	GACAGGCTGGCTTGTGTATCCGTCTCACGGTGAGCAG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTGATGGACAAAGGCATCATCACAGGTGAAGCGAGCA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CTCGATCACGTAAAGAAACACGCTCACACCGAGCGT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTATCCCCTATGGGGCTTAATCCGTTATGCCTGGCA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CTACTAAACGGAAGTGCATAGTGTACTCATTATTG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AGATTCCGGTACGCCATAGTCGGAAGACAGATACT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CATCAGCCAACGCTATGATCTCGCCTGTATCTT
GTGGCACTCTATATGAGTGCGTGGATTGAAAT	CCTCGTGCGGCCTGTAAAAACCGATATAACGAGGGTCAA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	GTAATGGTCCCTTAGCGCTTTGTCGTTGAAGTCAGT
GTCGCACTCTATATGAGTGAGTGGATTGAAAT	GCATTACCCTCCCAGTAATCCATCGTAAACACA
GTCGCACTTTATATGAGTGCGTGGATTGAAAT	TCTGACAAATGTTAATTAAGCAATGCCTCACAT
GTCGTACTCTATACGAGTATGTGGATTGAAGT

Protein	Signature genes	Signature genes Name	Protein_function
CP017968.3\|AUJ88425.1\|2397569_2397809_-\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB76320.1\|2406837_2407590_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238119
CP017968.3\|APB76319.1\|2407602_2408439_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238083
CP017968.3\|APB76321.1\|2404707_2406753_+\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236545
CP017968.3\|APB76315.1\|2414662_2415382_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
CP017968.3\|APB76324.1\|2398586_2402582_+\|type-VII-secretion-protein-EssC	unknown	unknown	gnl\|CDD\|274860
CP017968.3\|APB76314.1\|2415378_2417319_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
CP017968.3\|APB76318.1\|2408704_2409514_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
CP017968.3\|APB76311.1\|2418886_2419918_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
CP017968.3\|APB76312.1\|2418230_2418890_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
CP017968.3\|APB76322.1\|2404231_2404507_+\|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl\|CDD\|274862
CP017968.3\|APB76325.1\|2398198_2398519_+\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB78423.1\|2403446_2403983_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274862
CP017968.3\|APB76309.1\|2421015_2421282_-\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB76308.1\|2421566_2422376_+\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB76313.1\|2417368_2418244_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
CP017968.3\|APB76323.1\|2402598_2403441_+\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB76310.1\|2419928_2420219_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP017968.3\|APB76317.1\|2411747_2412062_+\|envelope-stress-response-membrane-protein-PspB	unknown	unknown	unknown
CP017968.3\|APB76316.1\|2412065_2414549_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
CP017968.3\|APB76320.1\|2406837_2407590_+\|hypothetical-protein	gnl\|CDD\|238119	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.	8.50689e-08
CP017968.3\|APB76321.1\|2404707_2406753_+\|transcription-termination-factor-Rho	gnl\|CDD\|236545	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional.	3.07564e-11
CP017968.3\|APB76314.1\|2415378_2417319_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	8.0675e-169
CP017968.3\|APB76324.1\|2398586_2402582_+\|type-VII-secretion-protein-EssC	gnl\|CDD\|274860	TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC, C-terminal domain. This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking].	0
CP017968.3\|APB76315.1\|2414662_2415382_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	1.37608e-94
CP017968.3\|APB76318.1\|2408704_2409514_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	3.67062e-90
CP017968.3\|APB76310.1\|2419928_2420219_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.08341e-31
CP017968.3\|APB76312.1\|2418230_2418890_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	7.99294e-27
CP017968.3\|APB76322.1\|2404231_2404507_+\|WXG100-family-type-VII-secretion-target	gnl\|CDD\|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	4.19531e-14
CP017968.3\|APB78423.1\|2403446_2403983_+\|hypothetical-protein	gnl\|CDD\|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	4.06862e-06
CP017968.3\|APB76313.1\|2417368_2418244_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	1.83639e-128
CP017968.3\|APB76319.1\|2407602_2408439_+\|hypothetical-protein	gnl\|CDD\|238083	cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.	0.0054673
CP017968.3\|APB76311.1\|2418886_2419918_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
CP017968.3\|APB76316.1\|2412065_2414549_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.02758e-71

>CP017968.3|APB76318.1|2408704_2409514_+|SDR-family-NAD(P)-dependent-oxidoreductase
MSYTYAGGARFEGKTALITGAGSGIGKATAIQMAREGANVALFDVSNERILETEREINAIREGSARAFDVDIADPVRVEKAVLEAVELFGGLHIIFANAGINGVVGPIEDLSIEDWRQTLSTNLDGTFLTVKYTIPHLKKNGGGSIIITSSINGNQRFTSFGMSAYSTSKAGQTGFAKMAALELAKFRIRVNVIYPGAISTNIDETTEKSEGLKQITIPVKFPEGGQPLADGPGQPEQVADLVTFLASDHSRHITGAQIVIDGAESLLF
>CP017968.3|APB76319.1|2407602_2408439_+|hypothetical-protein
MNPLLSLLPASKKKGMNARLTQQFAYISSQTGDQPLSSHHSRFMCRYGYGRSAESASMGESGQDFAAVRIHKSVCCFVLCDGVGLSYRGDFAARYLGSSLLDWMERGQDLSVDQLRVYLERLAGTAAEELDRQPLDHESGLMRSVLEDKRRQGSQSMYICGKIELPKRGSRGRLRLAWQGDSRLRLWNGAEEISELFDHTFSTSERWSTSRGPIGGKPHWYERSIPADMPMRLQVYTDGLSDLDPIREPVPDEQIQVLLDASHTGGLDDDAAFIELQW
>CP017968.3|APB76320.1|2406837_2407590_+|hypothetical-protein
MNYTIQASQRTPALIIYLIDISASMNMLMEGRRRIDVVYEAISLAIRQMVFRSTKGNRLTARYRIAILAYSDDVYDLLNGVKGIDEIAAIGSLPDLTPKRFSDSAKAFLQAERILQAELPGMQDCPAPLVCHMTDGVSTGDDPEPIAKRIMSMSVPDGNVLVENIFLSDRLLETPIQDPRRWKGLTHNTPLQDEHAVKLRDMSSVLPESYREMLFEADYQLGEGAIMMLPGTCAELVSIGFQMSAATPVR
>CP017968.3|APB76321.1|2404707_2406753_+|transcription-termination-factor-Rho
MSFQPNPGDELIINGTAYVVGRHPAAPGLAYAQAGRQGIVYQLNAKNGAPHEAKALKVFFPKFRIPAMVYQSEHMEAYGDIPGLQVCKRDVLTPERNGSLIAEQPDLLYAVLMPWVHGMTWFDCLTDQRQLEASDSLALARALAGIGSAMEQKGLAHCDLSAPNVMLPFFSEVELPQGTSAVELVDVEQMYSTKMDRPDALLAGSPGYAAHRTVHSGLWSAYADRFAGAIIIGEMLGWSDRVVVDKAWGESYFDQHEMQTPCERYFILRKSLESRWGSKVVELFSRAWDSQDLSSCPTFGEWLVVLNAVTEQEIPVEAIEPEPVATETIESAAVGGLASEAAPSLSAPAPLKAEQAALLNQAALEQGERGVTDKLFRQARDLEQQNKPAAALEVYRSLYHFVEDGSPLHVEVSAAITGLEEQLNPKTPEQPEKSKAWYRSKAFIVTTAAAVVLLAAGIPAVNILADQSNQRQIEAAKQEEAAKAAKAAEEKLAAEQEAAQKLLTEKQRQEAEQQAKQQVLAAQKQQEEQKRQQALIDQQVKYEAYLAQKEQNKQAAAKLAKQKAYDQQAKYEKYLALKKEQETRAAQEEAARKAAAEAEQKQKESMHARNKENVLQLISLYNKAYASQEGGSAAKAKSFAKRFRTLYDSNPSYYRSVGEVGYRASSIYNFLGDTNFRLPKI
>CP017968.3|APB76322.1|2404231_2404507_+|WXG100-family-type-VII-secretion-target
MAGRILITPEQVDQVANQFKQSGEQSQQIVSSLTQSISGMEGQWEGMTKQRFFQEFQEASKQMQAFVTTLNSISQELTAIANKFRTVDQTK
>CP017968.3|APB78423.1|2403446_2403983_+|hypothetical-protein
MRIRVEPDVLRGLSGQLQHAAEQIQQLTAGLEQALQSLDWDVSAREAILNHWMQAKRMSEQIHAYLHTSGTQLNRKAEQFQSVDHNYQTILSFASQPLGRPVTMLDWSNQQSPSILPGQASETGSLISNPQSVVHAIAGVQSSDVETLHQDILMQASSSSPQDWYFTDPSTTRDQPVA
>CP017968.3|APB76323.1|2402598_2403441_+|hypothetical-protein
MLTFQASKQKLITLKAKELFFLAGVLGSDRLLGVEDPFKGYLAEELAEEWEQVKATLLEKGYLKQVDKGKELAMPPTVFSRVAIAGLSNRACRIRYVRGGKRFEGYLHCTNERVVELVKSADEPDEYRLYDLGNVEKACETLIDKMGWVDRLVPESPALMFSKQAFNKIYEQSAGESVSLISSKLTEASGDAEGAARLAQSLSSRVAEGELQLLVWNGREWESQRAAFVLCPAMNWIFRMSSSGNGDWLIAAMASRDQFVDLLLNWLKQSAVNEEVTEEG
>CP017968.3|APB76324.1|2398586_2402582_+|type-VII-secretion-protein-EssC
MNALYQRSPRLRPALREEKLEILRPPAEPSKPSFSIISILIPLMMTLVTIGFYVYMSKTGKMGNSNYLMFQMVTVVMMLTSYTIPFFVYLNNKKEYKRNLEERDRMYREQLQKHREELEMKREEQIRTLYEIHGDPQICTQIVKNRNSSLWERSPEDEDFLQVRIGTGQVPFHIKLQIPRPDGYDRDPLLGAADELEEEFRLVDAASIALPLFQSKVVGLVGDREHTLAALRVILAQVTVRHSPDEVKIASFYDEREESEWTWMRWLPHVWDDDRIQRMMSDRSSSAHQLADFLFARLNRRKNNRNDRQGKGMEVPCYIVVLSDTQLIEEEPLLPLLLEDGRAIDACTIVLASRKEALPMQCQLIVEASKEQGVYARKSESAEVEQQSFKPDRLSKEEADALARYMAPIRLKRSSASDIPAVLPLFDMMSVASVEELDVADRWRRNRHPDTLPVPMGVRAGGKRIMINLHDKIERQGHGPHGLIAGTTGSGKSEVIQSIVASLAAEFHPHDLAFMLIDYKGGGMSNTFVNLPHVVGTITNLDNNLIERAKISLKAELVRRQKILNDAGNLQHIDEYYRLLRQRQEQPLPHLVIIIDEFAQLKRDQPEFMDELISIAAIGRTLGVHLILATQKPAGVVDDKIWSNSRFRICLRVQSEGDSRDMLKIPNAAWITKPGRGYFQVGSDEVFEEMQFAWSGAPYIGNSDISSALPVHEVRLNGKREALLTGGERASSGLKGEEAPKQLQVFIDYIANEAAKAGIERLQGPWLPPLPELLDLTNLPVCTEIDSTSSPLELKALIGLVDDLPNQRQEPIYASLDHGHWAVYGMPGMGKTTFLHTLLMSTAQRFAANHWNGYIIDMGRTMRDFGELPQIGAVMMAEEDDRIKRLFRYLFKMVAVRKEMLSEAGVKTISSYRRSAVEDIPQIVVVIDGYLNFRNAYPDENELLESLLREGGSLGITFIITANRITDVFEKFRSNIPNAVSFEMSDPSDYYYAVGRPAKTPGPLIPGRALVKGHVPPLEFQTALPSPGEDEAERSARLRRNIAGIVQEWKGKHAPAILPLPERIPLSELLQQWDRTSGPSGALPYEVPVGLQSDDLEPFLLNLKEGPNFIVGSPMEGGKTSFLMSWIISLAYYTSPDQLEVYTIDTRYGGGGLSRLRHLPHVKAAAESEEEMGPLVQKVYDIVQQRNKEGNDPELLLVIDDADMLSKQLNDFMIKDQLSAIVRLGRDRNVHVVLSGVPSDFPTFGVDWFNDVKASQSGMLFGTLDSNDLSFFRIPYSEANAAAGGLKVLPPGQGYYVRRKFTRIKAAIPFSEQVSCEDWITKIRDRWHVVV
>CP017968.3|APB76325.1|2398198_2398519_+|hypothetical-protein
MILTVLSGRQETEWFDIEVADEYSVEHLKLMLGVRIFGEPPVEGMQYIMEAKFPEGLWFRVGDNQLLTGSGLREGCTVRIQRAFSTTQDEAPVYGRRSLFQSEKNG
>CP017968.3|AUJ88425.1|2397569_2397809_-|hypothetical-protein
MRTLITFQNKRIPVYFNQENKQPVQKTLKLLSNTLENKISSGKRALQKCLNSLISIEIVGCEAILHSVSENDSLALSLY
>CP017968.3|APB76317.1|2411747_2412062_+|envelope-stress-response-membrane-protein-PspB
MNLLFIPGLYFYIYLGIGLIVGYWFVSKELTERAQEMQQENPEENDEELSTAREGLYQALHDLYHLIGQKGVIAAIYILFMLFWLPMWLVITWKRLFTKKTKGD
>CP017968.3|APB76316.1|2412065_2414549_+|CRISPR-associated-helicase-Cas3'
MQYIAHIRESDQEIQTVAEHLLETRQVAEAYGDKIGIRHITGLAGMLHDLGKYTEKFQNYIRLAVQNPDNPPKRGSVDHSSAGGKLLFNLFHIQPKGTFDKQDLFIKYVLTEVVANAIISHHSYLQDFLTPQLESRFLYRVRDLEIEGFEDAVAFFYKQVMEKSTFFDYVNQAKAELDQYMNRDDEADFELKLMYLSKFVFSALIDADRTNTRCFEENKNTGDKIAVEAMNHQMLFHEYYEKLMMHIKSLQAAKDANTPINLLRKEMSEQCEQFAERPSGIHTLSIPTGGGKTLASFRYALKHAVTFKKKHIIYVVPFTTIIEQNAREVREIIVDDANILEHHSNVVMDDVEEGESNELEDVVVSTRQKLKLAKDNWDSPIIFTTMVQFLNVFYAGGSRNIRRLHNLSESVIIFDEVQKVPTHCISLFNQAVNFLKTYAHSGIVLCTATQPELDFVHNKLEIEPDAEMVHDLNHVIEAFKRVEIVDKATDMKFNTEKLADFVEERLADEQSVLVILNTKTVVKNLYHRLKEESGTVPIYHLSTSMCPAHRNSILEKVKNHLQHKEPVVCISTQLIEAGVDISFKCVIRSLAGLDSIAQAAGRCNRHGEDRMKQVYVIDHEEEDLKRLKEIRIGKEISRKMFIDLKRNKTCLGGNVLSAQSMEIYFQKYYSELKTDLNYFIPKLRKNMTELLYANRIENTYFQSYCKENETILPLFLANSYRTAADHFQVIEDHTTAVIVPYGDGEKEGKEIIADLNGQQSIEDLTDLLRRAQQFTINIFNYEKDRLDQNKGLVSFLDGKIYALTDGAYDDSYGLNLENDSLHSRFIL
>CP017968.3|APB76315.1|2414662_2415382_+|type-I-C-CRISPR-associated-protein-Cas5
MRNAIEFKVYGDYALFTDPLTKLGGEKLTYSVPTYQALKGIVESIYWKPTIMMVIDKVRVLHAIRMESKGVRPIEYGGGNTLANYTYLKDPCYEVQAHFVFNPHRPEMEYDRNENKHHNILKRSLLAGGRRDIFLGTRECQAYVEPCEFGIEAGFYDNYGDIHLGNMVHGINYPDETGRDQMEVRLWNPVMKDGVIDFIRPEECTQVRTIANMQPKRFNENNVQSADELLAQWEGWEIK
>CP017968.3|APB76314.1|2415378_2417319_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWLLNLYETYESNLDHVGVIEKKHNDREYTLLPISHTTQNAQIEVEVTEQGDFHSARILDKNEFSTLIPSTEKSASRAGSVISPYPLHDKLSYVAGDFVAYGGKIKKEEPFSAYIQQLEGWATSDYATSKVKSIYRYLSKRRLIKDLVDESILYLDANQKLISTWDKKYEPIHGEKPPIFTAVPGEQESVFIRFNVYSPDKVLAKVWEDKEMYDSFVGYYSQLLGEEDICYVTGKQLPSTDKHANKIRNSGDKAKLISANDTSGFTFRGRFAHSHEAASISYEVSQKAHNALKWLINRQGKVMEQRVFLVWGNDEPSILNFTENDNIFAMGLPFKAKEIKSHTNEEFAFELAKALTGYANTLAVKSSSKAKVNILVLDSATTGRMAVNYYRNLDKKLYFEKLIHWHSTCVWLHRYQKDEQGEYLQFWGAPATKDIAFAAYGSKANDKLVKGLMERMLPCIVDGQNIPQDIVRSAINRASSPVSMDKWEWEKTLSVTCALVNQREGYNVALDKDNMDRSYLFGRLLAIADVMERSALDKDEKRSTNAIRYMNAFSQHPERTWRTIQNALQPHQARLGKRLSYYSNMIDEVLHKIPFNEFNNKPLTGKYLLGLSSQRYEIYHNNLKKDLEGNNDNKENNTLDMNEQQ
>CP017968.3|APB76313.1|2417368_2418244_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSVLDHKIDFAIVLSVTRANPNGDPLNGNRPRQNYDGYGEISDVALKRKLRNRLQDMGESIFVQSNDRNSDAFNSLRERADANPELEKFFKGKEGSSDEFAKIACQEWIDVRSFGQVFAFKAASKGAGVSVGVRGPVSIHTATSIDPIDITSMQITKSVNSEPGKERGSDTMGMKHRVDFGVYLFKGSINTQLAEKTGFTNEDAGKIKDALISLFENDVSSARPDGSMEVHKVYWWEHNSKLGKYSSAKVHRSLEVKPKENVSVIDKSFDTHYECILTPLEGLEVQEYAGL
>CP017968.3|APB76312.1|2418230_2418890_+|CRISPR-associated-protein-Cas4
MQVYNEEDYLLLSGLQHFNFCRRQWALIHIEQQWEENVRTIEGNHLHRKADQPMIREKRGDKLIVRALPIHSRELGITGICDVVEFICDPLGVPLAGEEGTYLPFPVEYKRGKPKRNDSDHAQLVAQVMCLEEMLVCEISKGYFYYDEIKHRVEVIITAADRERVRRSLQEMRHYFERNHTPKAKAGPHCLSCSLHNICVPEILNKKSVSSFIESRIAE
>CP017968.3|APB76311.1|2418886_2419918_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLFVTMPDTYLSLDGENIVIKQEESILARYPLHNLEAVCTFGYSGASPGLMGACATRNIDLTFMTRSGRFLARVTGESRGNVVLRKEQYRISDDDRRSALVARNMIIGKIYNHKWILERATRDYPLRIDTERMKKVTASLTKIMKQVREVEELDILRGLEGTAAVQYNSVWDDLILQQKNDFYFHGRHKRPPLDNVNALLSFSYTLLSNDMKSALEAVGLDAYVGFLHRDRPGRASLALDVMEELRGVYADRFVLTLINKKLIHGKGFYKKENGAVMMDDDTRKIVLKAWQERKQEKMIHPYLNEKMSWGLVPYSQALLLARYIRGDLDEYPPFLWK
>CP017968.3|APB76310.1|2419928_2420219_+|CRISPR-associated-endonuclease-Cas2
MLILITYDVSTVDREGRKRLAKVAKKCVDHGQRVQNSVFECILDSTQFRSLKYELEELIDPKEDSLRFYNLGDNYKKKVEHIGAKEAYDMESPLIL
>CP017968.3|APB76309.1|2421015_2421282_-|hypothetical-protein
MIVSTTQPRFAFLSKDGILRLHDEEHAAQHGNHVLTSLTDDESGYPVVEGQGDVYYAYEDKAYIKGNKGDGQLIPTPPVLKQIAAELL
>CP017968.3|APB76308.1|2421566_2422376_+|hypothetical-protein
MKKLSATLLTLIFLLVFSIPVSANPAESDSHGLEPFKDASTKSESEIDGYLKQMGFTDEELGFTPLELKKDIASNGGTKIKIEELDPEVVIKDENGKTVAPSDKISTQDVKDGIFKMYGYAFKLESPNSKENAYHVYASYNWERGPLAYYTDTLAMAWQSKVTPYRSPYSVHNWRSGSHLYQYENQLQKQQIEGDAFEVDVLGYPDPQDGFARQEVRAPKSLTGQTGAVEIAYAHKTIPGVALAILNYFSIDFSGAGQQEYQDRFNFTY

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Crispr_ID: CP017968_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP017968_2

2420400-2420846

TypeI

Consensus_repeat	Method
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	PILER-CR
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACTCTGTATGGAGTGCGTGGATTGAAATN	CRT

6 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of CP017968_2

>merge|CP017968|2|2420400-2420846|PILER-CR,CRISPRCasFinder,CRT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAATAACCCCGGCCCGATCTAATTGTCTTCTCTGATCCGGGAGTCGCACTCTGTATGGAGTGCGTGGATTGAAATCGTTGAACTTCACAACTTTGGATAAATTGGAGCAAGGTCGCACTCTGTATGGAGTGCGTGGATTGAAATAACCTACCGCGCATGTGTGCTCCAACTTTGAGAATAGTCGCACTCTGTATGGAGTGCGTGGATTGAAATGTCAAGAACGGTTTGTGTGGGGATGACCCCACCAGCGTCGCACTCTGTATGGAGTGCGTGGATTGAAATTATGGAACTTAAGTTATTCGAAGTTAAAACGACTAGTCGCACTCTGTATGGAGTGCGTGGATTGAAATTCTTGATCTGGTTCGGGGTAGCTTGGGGAGTCATTGTCGCACTCTATATGAGTGCGTGGATTGAAATT

>CP017968|2|2|2420400-2420778|PILER-CR
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AACCCCGGCCCGATCTAATTGTCTTCTCTGATCCGGGA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CGTTGAACTTCACAACTTTGGATAAATTGGAGCAAG
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AACCTACCGCGCATGTGTGCTCCAACTTTGAGAATA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	GTCAAGAACGGTTTGTGTGGGGATGACCCCACCAGC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TATGGAACTTAAGTTATTCGAAGTTAAAACGACTA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT

>CP017968|2|2|2420400-2420778|CRISPRCasFinder
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AACCCCGGCCCGATCTAATTGTCTTCTCTGATCCGGGA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CGTTGAACTTCACAACTTTGGATAAATTGGAGCAAG
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AACCTACCGCGCATGTGTGCTCCAACTTTGAGAATA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	GTCAAGAACGGTTTGTGTGGGGATGACCCCACCAGC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TATGGAACTTAAGTTATTCGAAGTTAAAACGACTA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT

>CP017968|2|2|2420400-2420846|CRT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AACCCCGGCCCGATCTAATTGTCTTCTCTGATCCGGGA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CGTTGAACTTCACAACTTTGGATAAATTGGAGCAAG
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AACCTACCGCGCATGTGTGCTCCAACTTTGAGAATA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	GTCAAGAACGGTTTGTGTGGGGATGACCCCACCAGC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TATGGAACTTAAGTTATTCGAAGTTAAAACGACTA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TCTTGATCTGGTTCGGGGTAGCTTGGGGAGTCATT
GTCGCACTCTATATGAGTGCGTGGATTGAAATT

Protein	Signature genes	Signature genes Name	Protein_function
CP017968.3\|APB76302.1\|2429782_2431198_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
CP017968.3\|APB76315.1\|2414662_2415382_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
CP017968.3\|AUJ88426.1\|2431478_2431646_+\|aspartyl-phosphate-phosphatase-Spo0E-family-protein	unknown	unknown	gnl\|CDD\|378175
CP017968.3\|APB76314.1\|2415378_2417319_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
CP017968.3\|APB76303.1\|2429267_2429450_+\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB76305.1\|2425662_2426847_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|181082
CP017968.3\|APB76318.1\|2408704_2409514_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
CP017968.3\|APB76311.1\|2418886_2419918_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
CP017968.3\|APB76312.1\|2418230_2418890_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
CP017968.3\|APB76310.1\|2419928_2420219_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP017968.3\|APB76307.1\|2423139_2424624_+\|transcriptional-regulator-PtsJ	unknown	unknown	gnl\|CDD\|224089
CP017968.3\|APB76306.1\|2424731_2425661_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234948
CP017968.3\|APB76304.1\|2426843_2427047_+\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB76309.1\|2421015_2421282_-\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB76308.1\|2421566_2422376_+\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB76313.1\|2417368_2418244_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
CP017968.3\|APB76319.1\|2407602_2408439_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238083
CP017968.3\|APB78422.1\|2431756_2431951_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225635
CP017968.3\|APB76317.1\|2411747_2412062_+\|envelope-stress-response-membrane-protein-PspB	unknown	unknown	unknown
CP017968.3\|APB76316.1\|2412065_2414549_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
CP017968.3\|APB76302.1\|2429782_2431198_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	3.24315e-06
CP017968.3\|APB76315.1\|2414662_2415382_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	1.37608e-94
CP017968.3\|AUJ88426.1\|2431478_2431646_+\|aspartyl-phosphate-phosphatase-Spo0E-family-protein	gnl\|CDD\|378175	pfam09388, SpoOE-like, Spo0E like sporulation regulatory protein. Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure.	1.96372e-07
CP017968.3\|APB76314.1\|2415378_2417319_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	8.0675e-169
CP017968.3\|APB76305.1\|2425662_2426847_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|181082	PRK07682, PRK07682, aminotransferase.	0
CP017968.3\|APB76318.1\|2408704_2409514_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	3.67062e-90
CP017968.3\|APB76310.1\|2419928_2420219_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.08341e-31
CP017968.3\|APB76312.1\|2418230_2418890_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	7.99294e-27
CP017968.3\|APB76306.1\|2424731_2425661_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	9.90578e-145
CP017968.3\|APB76307.1\|2423139_2424624_+\|transcriptional-regulator-PtsJ	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.2027e-127
CP017968.3\|APB76313.1\|2417368_2418244_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	1.83639e-128
CP017968.3\|APB76319.1\|2407602_2408439_+\|hypothetical-protein	gnl\|CDD\|238083	cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.	0.0054673
CP017968.3\|APB78422.1\|2431756_2431951_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|225635	COG3093, VapI, Plasmid maintenance system antidote protein [General function prediction only].	0.0026489
CP017968.3\|APB76311.1\|2418886_2419918_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
CP017968.3\|APB76316.1\|2412065_2414549_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.02758e-71

>CP017968.3|APB76310.1|2419928_2420219_+|CRISPR-associated-endonuclease-Cas2
MLILITYDVSTVDREGRKRLAKVAKKCVDHGQRVQNSVFECILDSTQFRSLKYELEELIDPKEDSLRFYNLGDNYKKKVEHIGAKEAYDMESPLIL
>CP017968.3|APB76311.1|2418886_2419918_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLFVTMPDTYLSLDGENIVIKQEESILARYPLHNLEAVCTFGYSGASPGLMGACATRNIDLTFMTRSGRFLARVTGESRGNVVLRKEQYRISDDDRRSALVARNMIIGKIYNHKWILERATRDYPLRIDTERMKKVTASLTKIMKQVREVEELDILRGLEGTAAVQYNSVWDDLILQQKNDFYFHGRHKRPPLDNVNALLSFSYTLLSNDMKSALEAVGLDAYVGFLHRDRPGRASLALDVMEELRGVYADRFVLTLINKKLIHGKGFYKKENGAVMMDDDTRKIVLKAWQERKQEKMIHPYLNEKMSWGLVPYSQALLLARYIRGDLDEYPPFLWK
>CP017968.3|APB76312.1|2418230_2418890_+|CRISPR-associated-protein-Cas4
MQVYNEEDYLLLSGLQHFNFCRRQWALIHIEQQWEENVRTIEGNHLHRKADQPMIREKRGDKLIVRALPIHSRELGITGICDVVEFICDPLGVPLAGEEGTYLPFPVEYKRGKPKRNDSDHAQLVAQVMCLEEMLVCEISKGYFYYDEIKHRVEVIITAADRERVRRSLQEMRHYFERNHTPKAKAGPHCLSCSLHNICVPEILNKKSVSSFIESRIAE
>CP017968.3|APB76313.1|2417368_2418244_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSVLDHKIDFAIVLSVTRANPNGDPLNGNRPRQNYDGYGEISDVALKRKLRNRLQDMGESIFVQSNDRNSDAFNSLRERADANPELEKFFKGKEGSSDEFAKIACQEWIDVRSFGQVFAFKAASKGAGVSVGVRGPVSIHTATSIDPIDITSMQITKSVNSEPGKERGSDTMGMKHRVDFGVYLFKGSINTQLAEKTGFTNEDAGKIKDALISLFENDVSSARPDGSMEVHKVYWWEHNSKLGKYSSAKVHRSLEVKPKENVSVIDKSFDTHYECILTPLEGLEVQEYAGL
>CP017968.3|APB76314.1|2415378_2417319_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWLLNLYETYESNLDHVGVIEKKHNDREYTLLPISHTTQNAQIEVEVTEQGDFHSARILDKNEFSTLIPSTEKSASRAGSVISPYPLHDKLSYVAGDFVAYGGKIKKEEPFSAYIQQLEGWATSDYATSKVKSIYRYLSKRRLIKDLVDESILYLDANQKLISTWDKKYEPIHGEKPPIFTAVPGEQESVFIRFNVYSPDKVLAKVWEDKEMYDSFVGYYSQLLGEEDICYVTGKQLPSTDKHANKIRNSGDKAKLISANDTSGFTFRGRFAHSHEAASISYEVSQKAHNALKWLINRQGKVMEQRVFLVWGNDEPSILNFTENDNIFAMGLPFKAKEIKSHTNEEFAFELAKALTGYANTLAVKSSSKAKVNILVLDSATTGRMAVNYYRNLDKKLYFEKLIHWHSTCVWLHRYQKDEQGEYLQFWGAPATKDIAFAAYGSKANDKLVKGLMERMLPCIVDGQNIPQDIVRSAINRASSPVSMDKWEWEKTLSVTCALVNQREGYNVALDKDNMDRSYLFGRLLAIADVMERSALDKDEKRSTNAIRYMNAFSQHPERTWRTIQNALQPHQARLGKRLSYYSNMIDEVLHKIPFNEFNNKPLTGKYLLGLSSQRYEIYHNNLKKDLEGNNDNKENNTLDMNEQQ
>CP017968.3|APB76315.1|2414662_2415382_+|type-I-C-CRISPR-associated-protein-Cas5
MRNAIEFKVYGDYALFTDPLTKLGGEKLTYSVPTYQALKGIVESIYWKPTIMMVIDKVRVLHAIRMESKGVRPIEYGGGNTLANYTYLKDPCYEVQAHFVFNPHRPEMEYDRNENKHHNILKRSLLAGGRRDIFLGTRECQAYVEPCEFGIEAGFYDNYGDIHLGNMVHGINYPDETGRDQMEVRLWNPVMKDGVIDFIRPEECTQVRTIANMQPKRFNENNVQSADELLAQWEGWEIK
>CP017968.3|APB76316.1|2412065_2414549_+|CRISPR-associated-helicase-Cas3'
MQYIAHIRESDQEIQTVAEHLLETRQVAEAYGDKIGIRHITGLAGMLHDLGKYTEKFQNYIRLAVQNPDNPPKRGSVDHSSAGGKLLFNLFHIQPKGTFDKQDLFIKYVLTEVVANAIISHHSYLQDFLTPQLESRFLYRVRDLEIEGFEDAVAFFYKQVMEKSTFFDYVNQAKAELDQYMNRDDEADFELKLMYLSKFVFSALIDADRTNTRCFEENKNTGDKIAVEAMNHQMLFHEYYEKLMMHIKSLQAAKDANTPINLLRKEMSEQCEQFAERPSGIHTLSIPTGGGKTLASFRYALKHAVTFKKKHIIYVVPFTTIIEQNAREVREIIVDDANILEHHSNVVMDDVEEGESNELEDVVVSTRQKLKLAKDNWDSPIIFTTMVQFLNVFYAGGSRNIRRLHNLSESVIIFDEVQKVPTHCISLFNQAVNFLKTYAHSGIVLCTATQPELDFVHNKLEIEPDAEMVHDLNHVIEAFKRVEIVDKATDMKFNTEKLADFVEERLADEQSVLVILNTKTVVKNLYHRLKEESGTVPIYHLSTSMCPAHRNSILEKVKNHLQHKEPVVCISTQLIEAGVDISFKCVIRSLAGLDSIAQAAGRCNRHGEDRMKQVYVIDHEEEDLKRLKEIRIGKEISRKMFIDLKRNKTCLGGNVLSAQSMEIYFQKYYSELKTDLNYFIPKLRKNMTELLYANRIENTYFQSYCKENETILPLFLANSYRTAADHFQVIEDHTTAVIVPYGDGEKEGKEIIADLNGQQSIEDLTDLLRRAQQFTINIFNYEKDRLDQNKGLVSFLDGKIYALTDGAYDDSYGLNLENDSLHSRFIL
>CP017968.3|APB76317.1|2411747_2412062_+|envelope-stress-response-membrane-protein-PspB
MNLLFIPGLYFYIYLGIGLIVGYWFVSKELTERAQEMQQENPEENDEELSTAREGLYQALHDLYHLIGQKGVIAAIYILFMLFWLPMWLVITWKRLFTKKTKGD
>CP017968.3|APB76318.1|2408704_2409514_+|SDR-family-NAD(P)-dependent-oxidoreductase
MSYTYAGGARFEGKTALITGAGSGIGKATAIQMAREGANVALFDVSNERILETEREINAIREGSARAFDVDIADPVRVEKAVLEAVELFGGLHIIFANAGINGVVGPIEDLSIEDWRQTLSTNLDGTFLTVKYTIPHLKKNGGGSIIITSSINGNQRFTSFGMSAYSTSKAGQTGFAKMAALELAKFRIRVNVIYPGAISTNIDETTEKSEGLKQITIPVKFPEGGQPLADGPGQPEQVADLVTFLASDHSRHITGAQIVIDGAESLLF
>CP017968.3|APB76319.1|2407602_2408439_+|hypothetical-protein
MNPLLSLLPASKKKGMNARLTQQFAYISSQTGDQPLSSHHSRFMCRYGYGRSAESASMGESGQDFAAVRIHKSVCCFVLCDGVGLSYRGDFAARYLGSSLLDWMERGQDLSVDQLRVYLERLAGTAAEELDRQPLDHESGLMRSVLEDKRRQGSQSMYICGKIELPKRGSRGRLRLAWQGDSRLRLWNGAEEISELFDHTFSTSERWSTSRGPIGGKPHWYERSIPADMPMRLQVYTDGLSDLDPIREPVPDEQIQVLLDASHTGGLDDDAAFIELQW
>CP017968.3|APB76309.1|2421015_2421282_-|hypothetical-protein
MIVSTTQPRFAFLSKDGILRLHDEEHAAQHGNHVLTSLTDDESGYPVVEGQGDVYYAYEDKAYIKGNKGDGQLIPTPPVLKQIAAELL
>CP017968.3|APB76308.1|2421566_2422376_+|hypothetical-protein
MKKLSATLLTLIFLLVFSIPVSANPAESDSHGLEPFKDASTKSESEIDGYLKQMGFTDEELGFTPLELKKDIASNGGTKIKIEELDPEVVIKDENGKTVAPSDKISTQDVKDGIFKMYGYAFKLESPNSKENAYHVYASYNWERGPLAYYTDTLAMAWQSKVTPYRSPYSVHNWRSGSHLYQYENQLQKQQIEGDAFEVDVLGYPDPQDGFARQEVRAPKSLTGQTGAVEIAYAHKTIPGVALAILNYFSIDFSGAGQQEYQDRFNFTY
>CP017968.3|APB76307.1|2423139_2424624_+|transcriptional-regulator-PtsJ
MFQDFKLVSDRPVSIQVKEYVNRLIIKGALQADQKLPSTREMSVLLKVSRNTVIAAYEGLEDDGFTYAIPGKGSYVAAMVGQSAVDNGGSDGSATWEIDWKARMNEYAVSAVDLDMMKQGIRAQKGTISFTSIAPDEQLFDLGDVRRAFMDRMAIEGQVLLNYGYAKGYKPLIDYLMHYMENKGVDIIGKDMLITGGFTEGFDIVLSALRPSARRGAAICENPTHHTAIKNLKLQGFEITGIPMECDGIDVERLEEVLQTNSFDLAYLTPSYHNPTGIVMSPAKRSAVMKLMARHQIPVIEDGFNEELRYSGAHIAPLIATAGQGNGVIYIGSFSKVLFPGLRVGWVLGDRALIDTLESIKRARTIHTSTIDQSILYQYMLNGNFDKHVKKARTEYKRKYELTKACCEAHLPEAQVSGDGGLHLFLTFPAGVNTRQLLEACNEQGVIFTPGDKFFIQEGEGTNTLRLGFSRVTDENIERGIQIIGKQTRNFLKA
>CP017968.3|APB76306.1|2424731_2425661_+|D-alanine--D-alanine-ligase
MKIGVIMGGISSEREISLQTGQEMINHLDRSRYEVVPMVIEQRADLIAQVQQTGIDIALLALHGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKMLLKAAGVHTPRGLYWQGMDDYDPQVVERLGYPVIVKPNTGGSSIGIQLVQNEKELLSAVQGACSLDQAILIESYYEGTEITCSIVDGEVLPIISISSARSKWFDYKAKYEVGGAEEKVVELPPVIEQRVREAALASYRLLQCKVYARVDMILCQDRPYVLEVNTLPGMTANSLLPKSAAAAGITFTQLLDHIIASSLHERKQEWGMA
>CP017968.3|APB76305.1|2425662_2426847_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MFSEKGTGRFVSSRVRDIRPSGIRAFFDLNAAGGGTIALGVGEPDFVTPEKVREACIQALREGQTKYTSNAGLMELREEISAYFSSSFALSYDPEQEMIVTVGSSEAVDLALRAVIDPGDEVLIPAPSYIAYEPITHLHGGKIVEVAATAEEQFKLTPQALQAAITPHSKVLMINYPCNPTGTVMTEQDWLPMTELIIKHNLVVISDEVYAELTYGRKHVSIASLPGMKERTIVISGFSKAFAMTGWRVGYACGPHELIAGMLKIHQYTAMCAPTIAQIAALESLRHGLAAKDEMMASYNERRKLFVAGLNAIGLACHEPEGAFYAFPSITSTGMSSEQFALRMLKEAKVAVVPGHVFGSGGEGFIRCSYAASLVDLEKALERMGRFMQVMQPV
>CP017968.3|APB76304.1|2426843_2427047_+|hypothetical-protein
MMNRINNSTFAERFHKIFYKYLYDFRKYKGIFLINVVDISGCIYPKPERSALVLTGGTLLLKALSMN
>CP017968.3|APB76303.1|2429267_2429450_+|hypothetical-protein
MRISMSKFLKRYAAILLGYAICIGLFYALGYKMSAMGIYAILTGIVTGEIINFVISKREK
>CP017968.3|APB76302.1|2429782_2431198_+|XRE-family-transcriptional-regulator
MKHTPTISAEFEDYLKQNDMTLSQFAEYSGVHQRTLSNWISQHRPVSVQQLDRITAAMDLPEGYFYDLYIENYIIDLSPNFRRIEPLLYRCAELDKLDAIRRMVGHIMDNPLYASRLFDVAEALFEQGRHAAALPLYENVAEVEKYQHSERLATCQYRIFSIQVGDDQSRNLKAATLFEPFVERLDEIDQLDALKDLANVYRSLRLWDRLDVTARKMRDKAEIQYTLEHQQKKRKPAEIEKRLSRPLFVYITYSDLLCASVYEAKGDYEQALEYTYAYANLDWVKETDEDTLHWIKQFQDWALCNTYVNKLLFGDISVLSDYVEYIAVSKADKEMVTKLLNVMFAANRYQLNVNHVLKRFETLIDFFVKQGQSSSDMYTKQVIPEQFARLGYELAYYYLYQGKYNDGFKYLMYAMLRSHIINNETYFINCMGLFLHFREYAVPETKAGFLNLIEKVWLENVEKNGTADHRS
>CP017968.3|AUJ88426.1|2431478_2431646_+|aspartyl-phosphate-phosphatase-Spo0E-family-protein
MLMNPGVTLLRVERARKRLYQVQKKYGFLTHPKVIEQSMKLDELLNQYQIYKMKS
>CP017968.3|APB78422.1|2431756_2431951_+|Rha-family-transcriptional-regulator
MNKRNPVTPFGWKIKEKLVERQMDQRTFCDTYHIPASRLSNLIHGTRKAKKYRVQVCQLLGIEE

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Crispr_ID: CP017968_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP017968_3

2427332-2427766

TypeI

NA:I-C

Consensus_repeat	Method
GTCGCACTCTATAT-GAGTGCGTGGATTGAAAT	PILER-CR
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CRT

6 spacers

cas2,cas1,cas4,cas7

The CRISPR arrays of CP017968_3

>merge|CP017968|3|2427332-2427766|PILER-CR,CRISPRCasFinder,CRT
GTCGCACTCTATATGAGTGCGTGGATTGAAATTTCCTGGATGTGAATGTCCATTTAATGCGTCCAAAGGGAGTCGCACTCTATATGAGTGCGTGGATTGAAATTGAAAAATTCGTCCAGGGTGTCCGTGGTCTGGACGTCGCACTCTATATGAGTGCGTGGATTGAAATACAGATGGAAGTTATGTAGTGATCAGAAAGAAGATGTCGCACTCTATATGAGTGCGTGGATTGAAATACGAACAGCGTTCTCGCTCATGCCTTCGGTGTTGAGTCGCATTCTATATGAGTGCGTGGATTGAAATCTTCAACGACAAAAAAGGCTCATACCGAATAATTGTCGCACTCTATATGAGTGTGTGGATTGAAATGTTTCTCTGCCATCTCTGCTTTTAAGAGTTTCGGTCGCACTCTATATGAGTGCGTGGATCATGACG

>CP017968|3|3|2427332-2427700|PILER-CR
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTCCTGGATGTGAATGTCCATTTAATGCGTCCAAAGGGA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TGAAAAATTCGTCCAGGGTGTCCGTGGTCTGGAC
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	ACAGATGGAAGTTATGTAGTGATCAGAAAGAAGAT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	ACGAACAGCGTTCTCGCTCATGCCTTCGGTGTTGA
GTCGCATTCTATATGAGTGCGTGGATTGAAAT	CTTCAACGACAAAAAAGGCTCATACCGAATAATT
GTCGCACTCTATATGAGTGTGTGGATTGAAAT

>CP017968|3|3|2427332-2427766|CRISPRCasFinder
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTCCTGGATGTGAATGTCCATTTAATGCGTCCAAAGGGA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TGAAAAATTCGTCCAGGGTGTCCGTGGTCTGGAC
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	ACAGATGGAAGTTATGTAGTGATCAGAAAGAAGAT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	ACGAACAGCGTTCTCGCTCATGCCTTCGGTGTTGA
GTCGCATTCTATATGAGTGCGTGGATTGAAAT	CTTCAACGACAAAAAAGGCTCATACCGAATAATT
GTCGCACTCTATATGAGTGTGTGGATTGAAAT	GTTTCTCTGCCATCTCTGCTTTTAAGAGTTTCG
GTCGCACTCTATATGAGTGCGTGGATCATGACG

>CP017968|3|3|2427332-2427765|CRT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTCCTGGATGTGAATGTCCATTTAATGCGTCCAAAGGGA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TGAAAAATTCGTCCAGGGTGTCCGTGGTCTGGAC
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	ACAGATGGAAGTTATGTAGTGATCAGAAAGAAGAT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	ACGAACAGCGTTCTCGCTCATGCCTTCGGTGTTGA
GTCGCATTCTATATGAGTGCGTGGATTGAAAT	CTTCAACGACAAAAAAGGCTCATACCGAATAATT
GTCGCACTCTATATGAGTGTGTGGATTGAAAT	GTTTCTCTGCCATCTCTGCTTTTAAGAGTTTCG
GTCGCACTCTATATGAGTGCGTGGATCATGAC

Protein	Signature genes	Signature genes Name	Protein_function
CP017968.3\|APB76302.1\|2429782_2431198_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
CP017968.3\|APB76298.1\|2436476_2437061_+\|low-temperature-induced-protein	unknown	unknown	gnl\|CDD\|378584
CP017968.3\|AUJ88426.1\|2431478_2431646_+\|aspartyl-phosphate-phosphatase-Spo0E-family-protein	unknown	unknown	gnl\|CDD\|378175
CP017968.3\|APB76300.1\|2432513_2433509_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|235573
CP017968.3\|APB76303.1\|2429267_2429450_+\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB76297.1\|2437331_2438504_+\|acyltransferase	unknown	unknown	gnl\|CDD\|376607
CP017968.3\|APB76305.1\|2425662_2426847_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|181082
CP017968.3\|APB76301.1\|2432074_2432449_+\|DUF1992-domain-containing-protein	unknown	unknown	gnl\|CDD\|182303
CP017968.3\|APB76310.1\|2419928_2420219_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP017968.3\|APB76312.1\|2418230_2418890_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
CP017968.3\|APB76306.1\|2424731_2425661_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234948
CP017968.3\|APB76307.1\|2423139_2424624_+\|transcriptional-regulator-PtsJ	unknown	unknown	gnl\|CDD\|224089
CP017968.3\|APB76304.1\|2426843_2427047_+\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB76299.1\|2433830_2436359_+\|ATP-dependent-helicase-HrpB	unknown	unknown	gnl\|CDD\|273901
CP017968.3\|APB76309.1\|2421015_2421282_-\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB76308.1\|2421566_2422376_+\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB76313.1\|2417368_2418244_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
CP017968.3\|APB78422.1\|2431756_2431951_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225635
CP017968.3\|APB76311.1\|2418886_2419918_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
CP017968.3\|APB78421.2\|2438668_2439307_+\|maltose-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100040

Protein	Function_ID	Function_description	E-value
CP017968.3\|APB76310.1\|2419928_2420219_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.08341e-31
CP017968.3\|AUJ88426.1\|2431478_2431646_+\|aspartyl-phosphate-phosphatase-Spo0E-family-protein	gnl\|CDD\|378175	pfam09388, SpoOE-like, Spo0E like sporulation regulatory protein. Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure.	1.96372e-07
CP017968.3\|APB76300.1\|2432513_2433509_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|235573	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS.	9.72043e-113
CP017968.3\|APB76298.1\|2436476_2437061_+\|low-temperature-induced-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.14243e-12
CP017968.3\|APB76297.1\|2437331_2438504_+\|acyltransferase	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	6.42994e-17
CP017968.3\|APB76305.1\|2425662_2426847_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|181082	PRK07682, PRK07682, aminotransferase.	0
CP017968.3\|APB76301.1\|2432074_2432449_+\|DUF1992-domain-containing-protein	gnl\|CDD\|182303	PRK10203, PRK10203, hypothetical protein; Provisional.	5.11158e-32
CP017968.3\|APB76311.1\|2418886_2419918_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
CP017968.3\|APB76312.1\|2418230_2418890_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	7.99294e-27
CP017968.3\|APB76306.1\|2424731_2425661_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	9.90578e-145
CP017968.3\|APB76307.1\|2423139_2424624_+\|transcriptional-regulator-PtsJ	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.2027e-127
CP017968.3\|APB76299.1\|2433830_2436359_+\|ATP-dependent-helicase-HrpB	gnl\|CDD\|273901	TIGR01970, ATP-dependent_RNA_helicase_HrpB, ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. [Unknown function, Enzymes of unknown specificity].	0
CP017968.3\|APB78421.2\|2438668_2439307_+\|maltose-O-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	3.70288e-76
CP017968.3\|APB76313.1\|2417368_2418244_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	1.83639e-128
CP017968.3\|APB78422.1\|2431756_2431951_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|225635	COG3093, VapI, Plasmid maintenance system antidote protein [General function prediction only].	0.0026489
CP017968.3\|APB76302.1\|2429782_2431198_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	3.24315e-06

>CP017968.3|APB76304.1|2426843_2427047_+|hypothetical-protein
MMNRINNSTFAERFHKIFYKYLYDFRKYKGIFLINVVDISGCIYPKPERSALVLTGGTLLLKALSMN
>CP017968.3|APB76305.1|2425662_2426847_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MFSEKGTGRFVSSRVRDIRPSGIRAFFDLNAAGGGTIALGVGEPDFVTPEKVREACIQALREGQTKYTSNAGLMELREEISAYFSSSFALSYDPEQEMIVTVGSSEAVDLALRAVIDPGDEVLIPAPSYIAYEPITHLHGGKIVEVAATAEEQFKLTPQALQAAITPHSKVLMINYPCNPTGTVMTEQDWLPMTELIIKHNLVVISDEVYAELTYGRKHVSIASLPGMKERTIVISGFSKAFAMTGWRVGYACGPHELIAGMLKIHQYTAMCAPTIAQIAALESLRHGLAAKDEMMASYNERRKLFVAGLNAIGLACHEPEGAFYAFPSITSTGMSSEQFALRMLKEAKVAVVPGHVFGSGGEGFIRCSYAASLVDLEKALERMGRFMQVMQPV
>CP017968.3|APB76306.1|2424731_2425661_+|D-alanine--D-alanine-ligase
MKIGVIMGGISSEREISLQTGQEMINHLDRSRYEVVPMVIEQRADLIAQVQQTGIDIALLALHGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKMLLKAAGVHTPRGLYWQGMDDYDPQVVERLGYPVIVKPNTGGSSIGIQLVQNEKELLSAVQGACSLDQAILIESYYEGTEITCSIVDGEVLPIISISSARSKWFDYKAKYEVGGAEEKVVELPPVIEQRVREAALASYRLLQCKVYARVDMILCQDRPYVLEVNTLPGMTANSLLPKSAAAAGITFTQLLDHIIASSLHERKQEWGMA
>CP017968.3|APB76307.1|2423139_2424624_+|transcriptional-regulator-PtsJ
MFQDFKLVSDRPVSIQVKEYVNRLIIKGALQADQKLPSTREMSVLLKVSRNTVIAAYEGLEDDGFTYAIPGKGSYVAAMVGQSAVDNGGSDGSATWEIDWKARMNEYAVSAVDLDMMKQGIRAQKGTISFTSIAPDEQLFDLGDVRRAFMDRMAIEGQVLLNYGYAKGYKPLIDYLMHYMENKGVDIIGKDMLITGGFTEGFDIVLSALRPSARRGAAICENPTHHTAIKNLKLQGFEITGIPMECDGIDVERLEEVLQTNSFDLAYLTPSYHNPTGIVMSPAKRSAVMKLMARHQIPVIEDGFNEELRYSGAHIAPLIATAGQGNGVIYIGSFSKVLFPGLRVGWVLGDRALIDTLESIKRARTIHTSTIDQSILYQYMLNGNFDKHVKKARTEYKRKYELTKACCEAHLPEAQVSGDGGLHLFLTFPAGVNTRQLLEACNEQGVIFTPGDKFFIQEGEGTNTLRLGFSRVTDENIERGIQIIGKQTRNFLKA
>CP017968.3|APB76308.1|2421566_2422376_+|hypothetical-protein
MKKLSATLLTLIFLLVFSIPVSANPAESDSHGLEPFKDASTKSESEIDGYLKQMGFTDEELGFTPLELKKDIASNGGTKIKIEELDPEVVIKDENGKTVAPSDKISTQDVKDGIFKMYGYAFKLESPNSKENAYHVYASYNWERGPLAYYTDTLAMAWQSKVTPYRSPYSVHNWRSGSHLYQYENQLQKQQIEGDAFEVDVLGYPDPQDGFARQEVRAPKSLTGQTGAVEIAYAHKTIPGVALAILNYFSIDFSGAGQQEYQDRFNFTY
>CP017968.3|APB76309.1|2421015_2421282_-|hypothetical-protein
MIVSTTQPRFAFLSKDGILRLHDEEHAAQHGNHVLTSLTDDESGYPVVEGQGDVYYAYEDKAYIKGNKGDGQLIPTPPVLKQIAAELL
>CP017968.3|APB76310.1|2419928_2420219_+|CRISPR-associated-endonuclease-Cas2
MLILITYDVSTVDREGRKRLAKVAKKCVDHGQRVQNSVFECILDSTQFRSLKYELEELIDPKEDSLRFYNLGDNYKKKVEHIGAKEAYDMESPLIL
>CP017968.3|APB76311.1|2418886_2419918_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLFVTMPDTYLSLDGENIVIKQEESILARYPLHNLEAVCTFGYSGASPGLMGACATRNIDLTFMTRSGRFLARVTGESRGNVVLRKEQYRISDDDRRSALVARNMIIGKIYNHKWILERATRDYPLRIDTERMKKVTASLTKIMKQVREVEELDILRGLEGTAAVQYNSVWDDLILQQKNDFYFHGRHKRPPLDNVNALLSFSYTLLSNDMKSALEAVGLDAYVGFLHRDRPGRASLALDVMEELRGVYADRFVLTLINKKLIHGKGFYKKENGAVMMDDDTRKIVLKAWQERKQEKMIHPYLNEKMSWGLVPYSQALLLARYIRGDLDEYPPFLWK
>CP017968.3|APB76312.1|2418230_2418890_+|CRISPR-associated-protein-Cas4
MQVYNEEDYLLLSGLQHFNFCRRQWALIHIEQQWEENVRTIEGNHLHRKADQPMIREKRGDKLIVRALPIHSRELGITGICDVVEFICDPLGVPLAGEEGTYLPFPVEYKRGKPKRNDSDHAQLVAQVMCLEEMLVCEISKGYFYYDEIKHRVEVIITAADRERVRRSLQEMRHYFERNHTPKAKAGPHCLSCSLHNICVPEILNKKSVSSFIESRIAE
>CP017968.3|APB76313.1|2417368_2418244_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSVLDHKIDFAIVLSVTRANPNGDPLNGNRPRQNYDGYGEISDVALKRKLRNRLQDMGESIFVQSNDRNSDAFNSLRERADANPELEKFFKGKEGSSDEFAKIACQEWIDVRSFGQVFAFKAASKGAGVSVGVRGPVSIHTATSIDPIDITSMQITKSVNSEPGKERGSDTMGMKHRVDFGVYLFKGSINTQLAEKTGFTNEDAGKIKDALISLFENDVSSARPDGSMEVHKVYWWEHNSKLGKYSSAKVHRSLEVKPKENVSVIDKSFDTHYECILTPLEGLEVQEYAGL
>CP017968.3|APB76303.1|2429267_2429450_+|hypothetical-protein
MRISMSKFLKRYAAILLGYAICIGLFYALGYKMSAMGIYAILTGIVTGEIINFVISKREK
>CP017968.3|APB76302.1|2429782_2431198_+|XRE-family-transcriptional-regulator
MKHTPTISAEFEDYLKQNDMTLSQFAEYSGVHQRTLSNWISQHRPVSVQQLDRITAAMDLPEGYFYDLYIENYIIDLSPNFRRIEPLLYRCAELDKLDAIRRMVGHIMDNPLYASRLFDVAEALFEQGRHAAALPLYENVAEVEKYQHSERLATCQYRIFSIQVGDDQSRNLKAATLFEPFVERLDEIDQLDALKDLANVYRSLRLWDRLDVTARKMRDKAEIQYTLEHQQKKRKPAEIEKRLSRPLFVYITYSDLLCASVYEAKGDYEQALEYTYAYANLDWVKETDEDTLHWIKQFQDWALCNTYVNKLLFGDISVLSDYVEYIAVSKADKEMVTKLLNVMFAANRYQLNVNHVLKRFETLIDFFVKQGQSSSDMYTKQVIPEQFARLGYELAYYYLYQGKYNDGFKYLMYAMLRSHIINNETYFINCMGLFLHFREYAVPETKAGFLNLIEKVWLENVEKNGTADHRS
>CP017968.3|AUJ88426.1|2431478_2431646_+|aspartyl-phosphate-phosphatase-Spo0E-family-protein
MLMNPGVTLLRVERARKRLYQVQKKYGFLTHPKVIEQSMKLDELLNQYQIYKMKS
>CP017968.3|APB78422.1|2431756_2431951_+|Rha-family-transcriptional-regulator
MNKRNPVTPFGWKIKEKLVERQMDQRTFCDTYHIPASRLSNLIHGTRKAKKYRVQVCQLLGIEE
>CP017968.3|APB76301.1|2432074_2432449_+|DUF1992-domain-containing-protein
MEMFSRMAEQKIAEAMAKGEFDHLPGAGKPLVIEDLSHVPEELRMSYKLLKNAGILPEELQLQKECVQLRDLLHACHEAGEQQRISRRLTEKSLRLRMLLEERGLNTSSVFYEYESAMRKRLEE
>CP017968.3|APB76300.1|2432513_2433509_-|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MELQAQPIRGRFAPTPSGWIHLGNARTALLSWLHVRSLGGTYILRMEDIDMTRARSQLAQGIMEDLRWIGLEWDEGPDVGGPYGPYTQSQRLERFQSALEILQEQDLLYPCFCSRADIVAAAHAPHGLSGEGPAYSGACRNLSSQDVVAKAQHKLPSLRFKVPQNPDAVISFHDQVAGHVTFGAAEGGDFIVKRADGMFSYQLAVVVDDADMYMTDVLRGYDLLDSTPRQLLLYQALGLQSPRFAHVPLVLGPDGRRLAKRHGGVALRAMRRQGITPEAVIGWLAYFSGLLDSPEPVKAVDLIDDFHLDKLPKEPVILTKQCLMRLSALQR
>CP017968.3|APB76299.1|2433830_2436359_+|ATP-dependent-helicase-HrpB
MTDKQLPIMQVIPELKHILQSHSAAVLIAQPGAGKTTVTPLELLHEPWLAGQKMIMLEPRRLAARAAAAQMAKALGEPTGKTVGYRVRMDTKVGPNTRIEVVTEGVLTRMLQHDQALEGVGLIMFDEFHERSLHADLGLALALQSQALLRPDLKILIMSATLEAEPVCRLLGDAPLLECPGTVFPVETFHMSKPSSISLESFTAETVEKALDVHEGDLLVFLPGAREIHRTERELASKHLPAHVKVIPLYGSMKLEQQDEAIRSSALGSRKVVLATSIAESSLTIAGITVVIDSGLSRESVFSARTGMSRLTTVKVSKASADQRRGRAGRLQPGVCYRLWSAQEHAALPEASRPEIAAADLAPLALELAAWGVREPAELAWLDAPPEAAYRQATGLLHQLGCLDEAADGTTGGITAHGREVSALGTHPRLGHMLLRAAALSLAPTASRLAALLQERDPFRAHGGTDLRPRLDALREAAHARSTHSLLRAVDDTVIRRIVQESRQLLATLPTAAAAQDEPDGSAACGLLLAFAYPDRIAQGRGDGRFLLSGGRGARLRQVEWISRSSYLVAAEVDDEGADGAIQLAAPVELQELIQHCSELLLEQANVYWDSSASAVRARKVLRLGSLVLKETSYERPPAEEVAAALMQGIRERGLKLLSWNRQTLQLQARLIFMHFSAPEDWPDCTESALLDSLESWLLPFALGAKNVSDLQRLDSAALLLGRLDWEQRQQLDQEAPTHIRVPSGSRIPVDYSNPEAPALAVRLQELFGMRDTPLIGRGRVPIVLHLLSPAQRPVQVTSDLSSFWSEAYFEVKKDLKGRYPKHYWPDDPLEAVATNRAKPKR
>CP017968.3|APB76298.1|2436476_2437061_+|low-temperature-induced-protein
MTNNLNDYNEKKIVGVFDTEQEASRAIGQLQSKGIPSSEISVITRDRDELRTISEETGTKAPEGVATGAATGGIVGGVAGLLAGIGALAIPGIGPILAAGPIAATLTGAAVGAGAGGLVGGLVGLGIPEDDARQYETYVDQGKILVLVDSADHHRDVYDIFRTNRSLNADRYRTYDDTVADTPTDAYTDTRRNL
>CP017968.3|APB76297.1|2437331_2438504_+|acyltransferase
MSQKERISEVALLRGLAFAAVVLQHSVAHYAVAQGARIQDGVLMTLLLLCSKFAVPVFVFITGMVLFYNYDGVLKYGTFLRKRFMDIIVPYIIWSLLYELGNQLAQSGGYIHPLDFFQKLLNGKSSYHLWYIVMIIQCYVLFPVFRYAVRHLSALLPSKWRPAALAGFGVLYILLMFAVGPVYQAMDKLQLPVITSWFTLYADRNVIYFFFYFVLGAAAGMNVKRWNAWVTKAQMIYWPLFIVITGYLLYEMIGQFQTPRGTVLSFNYLSLLRPVMAVYCVASIFVAYRVATWIAHKGGRAASMLTAIGTLSYGAYLMHAFMLRVTYYFDETFFADWSHVLRTLASFVLCMIFSVAGTWLLARLPLGKWIVGLRVRPRPTGGPPALQKQA
>CP017968.3|APB78421.2|2438668_2439307_+|maltose-O-acetyltransferase
MSGPDTRSVFPMKNIRSLCFLNNVVVNPYIEIGDYTYYDDNDNPLDFEKNVLYHFDFIGDKLKIGKFCAIAAKAKFIMNGANHNTNAFTTFPFGAFGGDWEVGLPNLSGGYKGDTVVGNDVWIGYNATIMPGVQIGDGAIIASNAVVTKDVRPYSIVGGNPAKLIRYRFDEETIAMLQTLKWWDWDIQKITEYIPVLTSNDTEALKQLIQSS

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Crispr_ID: CP017968_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP017968_4

2428879-2429111

TypeI

NA:I-C

Consensus_repeat	Method
GTCGCACTCCATGT-GAGTGCGTGGATTGAAAT	PILER-CR
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACTCCATGTGAGTGCGTGGATTGAAAT	CRT

3 spacers

cas2,cas1,cas4,cas7

The CRISPR arrays of CP017968_4

>merge|CP017968|4|2428879-2429111|PILER-CR,CRISPRCasFinder,CRT
GTCGCACTCCATGTGAGTGCGTGGATTGAAATGTATTCCAATTTCGGAAGGTCGTCCGTTTTGCTCAAGTCGCACTCCATGTGAGTGCGTGGATTGAAATCTGACAGATGGAGGTTATATTTCACCGGGTCTATGTCGCACTCCATGTGAGTGCGTGGATTGAAATTTTCGGCAGCGGTAAAGCTCCGATAATTGTTTTGCGTCGCACTCCATGTGAGTGCGTGGATGGTATG

>CP017968|4|4|2428879-2429044|PILER-CR
GTCGCACTCCATGTGAGTGCGTGGATTGAAAT	GTATTCCAATTTCGGAAGGTCGTCCGTTTTGCTCAA
GTCGCACTCCATGTGAGTGCGTGGATTGAAAT	CTGACAGATGGAGGTTATATTTCACCGGGTCTAT
GTCGCACTCCATGTGAGTGCGTGGATTGAAAT

>CP017968|4|4|2428879-2429111|CRISPRCasFinder
GTCGCACTCCATGTGAGTGCGTGGATTGAAAT	GTATTCCAATTTCGGAAGGTCGTCCGTTTTGCTCAA
GTCGCACTCCATGTGAGTGCGTGGATTGAAAT	CTGACAGATGGAGGTTATATTTCACCGGGTCTAT
GTCGCACTCCATGTGAGTGCGTGGATTGAAAT	TTTCGGCAGCGGTAAAGCTCCGATAATTGTTTTGC
GTCGCACTCCATGTGAGTGCGTGGATGGTATG

>CP017968|4|4|2428879-2429111|CRT
GTCGCACTCCATGTGAGTGCGTGGATTGAAAT	GTATTCCAATTTCGGAAGGTCGTCCGTTTTGCTCAA
GTCGCACTCCATGTGAGTGCGTGGATTGAAAT	CTGACAGATGGAGGTTATATTTCACCGGGTCTAT
GTCGCACTCCATGTGAGTGCGTGGATTGAAAT	TTTCGGCAGCGGTAAAGCTCCGATAATTGTTTTGC
GTCGCACTCCATGTGAGTGCGTGGATGGTATG

Protein	Signature genes	Signature genes Name	Protein_function
CP017968.3\|APB76302.1\|2429782_2431198_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
CP017968.3\|APB76298.1\|2436476_2437061_+\|low-temperature-induced-protein	unknown	unknown	gnl\|CDD\|378584
CP017968.3\|AUJ88426.1\|2431478_2431646_+\|aspartyl-phosphate-phosphatase-Spo0E-family-protein	unknown	unknown	gnl\|CDD\|378175
CP017968.3\|APB76300.1\|2432513_2433509_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|235573
CP017968.3\|APB76303.1\|2429267_2429450_+\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB76297.1\|2437331_2438504_+\|acyltransferase	unknown	unknown	gnl\|CDD\|376607
CP017968.3\|APB76305.1\|2425662_2426847_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|181082
CP017968.3\|APB76301.1\|2432074_2432449_+\|DUF1992-domain-containing-protein	unknown	unknown	gnl\|CDD\|182303
CP017968.3\|APB76310.1\|2419928_2420219_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP017968.3\|APB76312.1\|2418230_2418890_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
CP017968.3\|APB76306.1\|2424731_2425661_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234948
CP017968.3\|APB76307.1\|2423139_2424624_+\|transcriptional-regulator-PtsJ	unknown	unknown	gnl\|CDD\|224089
CP017968.3\|APB76304.1\|2426843_2427047_+\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB76299.1\|2433830_2436359_+\|ATP-dependent-helicase-HrpB	unknown	unknown	gnl\|CDD\|273901
CP017968.3\|APB76309.1\|2421015_2421282_-\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB76308.1\|2421566_2422376_+\|hypothetical-protein	unknown	unknown	unknown
CP017968.3\|APB76313.1\|2417368_2418244_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
CP017968.3\|APB78422.1\|2431756_2431951_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225635
CP017968.3\|APB76311.1\|2418886_2419918_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
CP017968.3\|APB78421.2\|2438668_2439307_+\|maltose-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100040

Protein	Function_ID	Function_description	E-value
CP017968.3\|APB76310.1\|2419928_2420219_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.08341e-31
CP017968.3\|AUJ88426.1\|2431478_2431646_+\|aspartyl-phosphate-phosphatase-Spo0E-family-protein	gnl\|CDD\|378175	pfam09388, SpoOE-like, Spo0E like sporulation regulatory protein. Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure.	1.96372e-07
CP017968.3\|APB76300.1\|2432513_2433509_-\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|235573	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS.	9.72043e-113
CP017968.3\|APB76298.1\|2436476_2437061_+\|low-temperature-induced-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.14243e-12
CP017968.3\|APB76297.1\|2437331_2438504_+\|acyltransferase	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	6.42994e-17
CP017968.3\|APB76305.1\|2425662_2426847_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|181082	PRK07682, PRK07682, aminotransferase.	0
CP017968.3\|APB76301.1\|2432074_2432449_+\|DUF1992-domain-containing-protein	gnl\|CDD\|182303	PRK10203, PRK10203, hypothetical protein; Provisional.	5.11158e-32
CP017968.3\|APB76311.1\|2418886_2419918_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
CP017968.3\|APB76312.1\|2418230_2418890_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	7.99294e-27
CP017968.3\|APB76306.1\|2424731_2425661_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	9.90578e-145
CP017968.3\|APB76307.1\|2423139_2424624_+\|transcriptional-regulator-PtsJ	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.2027e-127
CP017968.3\|APB76299.1\|2433830_2436359_+\|ATP-dependent-helicase-HrpB	gnl\|CDD\|273901	TIGR01970, ATP-dependent_RNA_helicase_HrpB, ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. [Unknown function, Enzymes of unknown specificity].	0
CP017968.3\|APB78421.2\|2438668_2439307_+\|maltose-O-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	3.70288e-76
CP017968.3\|APB76313.1\|2417368_2418244_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	1.83639e-128
CP017968.3\|APB78422.1\|2431756_2431951_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|225635	COG3093, VapI, Plasmid maintenance system antidote protein [General function prediction only].	0.0026489
CP017968.3\|APB76302.1\|2429782_2431198_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	3.24315e-06

>CP017968.3|APB76304.1|2426843_2427047_+|hypothetical-protein
MMNRINNSTFAERFHKIFYKYLYDFRKYKGIFLINVVDISGCIYPKPERSALVLTGGTLLLKALSMN
>CP017968.3|APB76305.1|2425662_2426847_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MFSEKGTGRFVSSRVRDIRPSGIRAFFDLNAAGGGTIALGVGEPDFVTPEKVREACIQALREGQTKYTSNAGLMELREEISAYFSSSFALSYDPEQEMIVTVGSSEAVDLALRAVIDPGDEVLIPAPSYIAYEPITHLHGGKIVEVAATAEEQFKLTPQALQAAITPHSKVLMINYPCNPTGTVMTEQDWLPMTELIIKHNLVVISDEVYAELTYGRKHVSIASLPGMKERTIVISGFSKAFAMTGWRVGYACGPHELIAGMLKIHQYTAMCAPTIAQIAALESLRHGLAAKDEMMASYNERRKLFVAGLNAIGLACHEPEGAFYAFPSITSTGMSSEQFALRMLKEAKVAVVPGHVFGSGGEGFIRCSYAASLVDLEKALERMGRFMQVMQPV
>CP017968.3|APB76306.1|2424731_2425661_+|D-alanine--D-alanine-ligase
MKIGVIMGGISSEREISLQTGQEMINHLDRSRYEVVPMVIEQRADLIAQVQQTGIDIALLALHGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKMLLKAAGVHTPRGLYWQGMDDYDPQVVERLGYPVIVKPNTGGSSIGIQLVQNEKELLSAVQGACSLDQAILIESYYEGTEITCSIVDGEVLPIISISSARSKWFDYKAKYEVGGAEEKVVELPPVIEQRVREAALASYRLLQCKVYARVDMILCQDRPYVLEVNTLPGMTANSLLPKSAAAAGITFTQLLDHIIASSLHERKQEWGMA
>CP017968.3|APB76307.1|2423139_2424624_+|transcriptional-regulator-PtsJ
MFQDFKLVSDRPVSIQVKEYVNRLIIKGALQADQKLPSTREMSVLLKVSRNTVIAAYEGLEDDGFTYAIPGKGSYVAAMVGQSAVDNGGSDGSATWEIDWKARMNEYAVSAVDLDMMKQGIRAQKGTISFTSIAPDEQLFDLGDVRRAFMDRMAIEGQVLLNYGYAKGYKPLIDYLMHYMENKGVDIIGKDMLITGGFTEGFDIVLSALRPSARRGAAICENPTHHTAIKNLKLQGFEITGIPMECDGIDVERLEEVLQTNSFDLAYLTPSYHNPTGIVMSPAKRSAVMKLMARHQIPVIEDGFNEELRYSGAHIAPLIATAGQGNGVIYIGSFSKVLFPGLRVGWVLGDRALIDTLESIKRARTIHTSTIDQSILYQYMLNGNFDKHVKKARTEYKRKYELTKACCEAHLPEAQVSGDGGLHLFLTFPAGVNTRQLLEACNEQGVIFTPGDKFFIQEGEGTNTLRLGFSRVTDENIERGIQIIGKQTRNFLKA
>CP017968.3|APB76308.1|2421566_2422376_+|hypothetical-protein
MKKLSATLLTLIFLLVFSIPVSANPAESDSHGLEPFKDASTKSESEIDGYLKQMGFTDEELGFTPLELKKDIASNGGTKIKIEELDPEVVIKDENGKTVAPSDKISTQDVKDGIFKMYGYAFKLESPNSKENAYHVYASYNWERGPLAYYTDTLAMAWQSKVTPYRSPYSVHNWRSGSHLYQYENQLQKQQIEGDAFEVDVLGYPDPQDGFARQEVRAPKSLTGQTGAVEIAYAHKTIPGVALAILNYFSIDFSGAGQQEYQDRFNFTY
>CP017968.3|APB76309.1|2421015_2421282_-|hypothetical-protein
MIVSTTQPRFAFLSKDGILRLHDEEHAAQHGNHVLTSLTDDESGYPVVEGQGDVYYAYEDKAYIKGNKGDGQLIPTPPVLKQIAAELL
>CP017968.3|APB76310.1|2419928_2420219_+|CRISPR-associated-endonuclease-Cas2
MLILITYDVSTVDREGRKRLAKVAKKCVDHGQRVQNSVFECILDSTQFRSLKYELEELIDPKEDSLRFYNLGDNYKKKVEHIGAKEAYDMESPLIL
>CP017968.3|APB76311.1|2418886_2419918_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLFVTMPDTYLSLDGENIVIKQEESILARYPLHNLEAVCTFGYSGASPGLMGACATRNIDLTFMTRSGRFLARVTGESRGNVVLRKEQYRISDDDRRSALVARNMIIGKIYNHKWILERATRDYPLRIDTERMKKVTASLTKIMKQVREVEELDILRGLEGTAAVQYNSVWDDLILQQKNDFYFHGRHKRPPLDNVNALLSFSYTLLSNDMKSALEAVGLDAYVGFLHRDRPGRASLALDVMEELRGVYADRFVLTLINKKLIHGKGFYKKENGAVMMDDDTRKIVLKAWQERKQEKMIHPYLNEKMSWGLVPYSQALLLARYIRGDLDEYPPFLWK
>CP017968.3|APB76312.1|2418230_2418890_+|CRISPR-associated-protein-Cas4
MQVYNEEDYLLLSGLQHFNFCRRQWALIHIEQQWEENVRTIEGNHLHRKADQPMIREKRGDKLIVRALPIHSRELGITGICDVVEFICDPLGVPLAGEEGTYLPFPVEYKRGKPKRNDSDHAQLVAQVMCLEEMLVCEISKGYFYYDEIKHRVEVIITAADRERVRRSLQEMRHYFERNHTPKAKAGPHCLSCSLHNICVPEILNKKSVSSFIESRIAE
>CP017968.3|APB76313.1|2417368_2418244_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSVLDHKIDFAIVLSVTRANPNGDPLNGNRPRQNYDGYGEISDVALKRKLRNRLQDMGESIFVQSNDRNSDAFNSLRERADANPELEKFFKGKEGSSDEFAKIACQEWIDVRSFGQVFAFKAASKGAGVSVGVRGPVSIHTATSIDPIDITSMQITKSVNSEPGKERGSDTMGMKHRVDFGVYLFKGSINTQLAEKTGFTNEDAGKIKDALISLFENDVSSARPDGSMEVHKVYWWEHNSKLGKYSSAKVHRSLEVKPKENVSVIDKSFDTHYECILTPLEGLEVQEYAGL
>CP017968.3|APB76303.1|2429267_2429450_+|hypothetical-protein
MRISMSKFLKRYAAILLGYAICIGLFYALGYKMSAMGIYAILTGIVTGEIINFVISKREK
>CP017968.3|APB76302.1|2429782_2431198_+|XRE-family-transcriptional-regulator
MKHTPTISAEFEDYLKQNDMTLSQFAEYSGVHQRTLSNWISQHRPVSVQQLDRITAAMDLPEGYFYDLYIENYIIDLSPNFRRIEPLLYRCAELDKLDAIRRMVGHIMDNPLYASRLFDVAEALFEQGRHAAALPLYENVAEVEKYQHSERLATCQYRIFSIQVGDDQSRNLKAATLFEPFVERLDEIDQLDALKDLANVYRSLRLWDRLDVTARKMRDKAEIQYTLEHQQKKRKPAEIEKRLSRPLFVYITYSDLLCASVYEAKGDYEQALEYTYAYANLDWVKETDEDTLHWIKQFQDWALCNTYVNKLLFGDISVLSDYVEYIAVSKADKEMVTKLLNVMFAANRYQLNVNHVLKRFETLIDFFVKQGQSSSDMYTKQVIPEQFARLGYELAYYYLYQGKYNDGFKYLMYAMLRSHIINNETYFINCMGLFLHFREYAVPETKAGFLNLIEKVWLENVEKNGTADHRS
>CP017968.3|AUJ88426.1|2431478_2431646_+|aspartyl-phosphate-phosphatase-Spo0E-family-protein
MLMNPGVTLLRVERARKRLYQVQKKYGFLTHPKVIEQSMKLDELLNQYQIYKMKS
>CP017968.3|APB78422.1|2431756_2431951_+|Rha-family-transcriptional-regulator
MNKRNPVTPFGWKIKEKLVERQMDQRTFCDTYHIPASRLSNLIHGTRKAKKYRVQVCQLLGIEE
>CP017968.3|APB76301.1|2432074_2432449_+|DUF1992-domain-containing-protein
MEMFSRMAEQKIAEAMAKGEFDHLPGAGKPLVIEDLSHVPEELRMSYKLLKNAGILPEELQLQKECVQLRDLLHACHEAGEQQRISRRLTEKSLRLRMLLEERGLNTSSVFYEYESAMRKRLEE
>CP017968.3|APB76300.1|2432513_2433509_-|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MELQAQPIRGRFAPTPSGWIHLGNARTALLSWLHVRSLGGTYILRMEDIDMTRARSQLAQGIMEDLRWIGLEWDEGPDVGGPYGPYTQSQRLERFQSALEILQEQDLLYPCFCSRADIVAAAHAPHGLSGEGPAYSGACRNLSSQDVVAKAQHKLPSLRFKVPQNPDAVISFHDQVAGHVTFGAAEGGDFIVKRADGMFSYQLAVVVDDADMYMTDVLRGYDLLDSTPRQLLLYQALGLQSPRFAHVPLVLGPDGRRLAKRHGGVALRAMRRQGITPEAVIGWLAYFSGLLDSPEPVKAVDLIDDFHLDKLPKEPVILTKQCLMRLSALQR
>CP017968.3|APB76299.1|2433830_2436359_+|ATP-dependent-helicase-HrpB
MTDKQLPIMQVIPELKHILQSHSAAVLIAQPGAGKTTVTPLELLHEPWLAGQKMIMLEPRRLAARAAAAQMAKALGEPTGKTVGYRVRMDTKVGPNTRIEVVTEGVLTRMLQHDQALEGVGLIMFDEFHERSLHADLGLALALQSQALLRPDLKILIMSATLEAEPVCRLLGDAPLLECPGTVFPVETFHMSKPSSISLESFTAETVEKALDVHEGDLLVFLPGAREIHRTERELASKHLPAHVKVIPLYGSMKLEQQDEAIRSSALGSRKVVLATSIAESSLTIAGITVVIDSGLSRESVFSARTGMSRLTTVKVSKASADQRRGRAGRLQPGVCYRLWSAQEHAALPEASRPEIAAADLAPLALELAAWGVREPAELAWLDAPPEAAYRQATGLLHQLGCLDEAADGTTGGITAHGREVSALGTHPRLGHMLLRAAALSLAPTASRLAALLQERDPFRAHGGTDLRPRLDALREAAHARSTHSLLRAVDDTVIRRIVQESRQLLATLPTAAAAQDEPDGSAACGLLLAFAYPDRIAQGRGDGRFLLSGGRGARLRQVEWISRSSYLVAAEVDDEGADGAIQLAAPVELQELIQHCSELLLEQANVYWDSSASAVRARKVLRLGSLVLKETSYERPPAEEVAAALMQGIRERGLKLLSWNRQTLQLQARLIFMHFSAPEDWPDCTESALLDSLESWLLPFALGAKNVSDLQRLDSAALLLGRLDWEQRQQLDQEAPTHIRVPSGSRIPVDYSNPEAPALAVRLQELFGMRDTPLIGRGRVPIVLHLLSPAQRPVQVTSDLSSFWSEAYFEVKKDLKGRYPKHYWPDDPLEAVATNRAKPKR
>CP017968.3|APB76298.1|2436476_2437061_+|low-temperature-induced-protein
MTNNLNDYNEKKIVGVFDTEQEASRAIGQLQSKGIPSSEISVITRDRDELRTISEETGTKAPEGVATGAATGGIVGGVAGLLAGIGALAIPGIGPILAAGPIAATLTGAAVGAGAGGLVGGLVGLGIPEDDARQYETYVDQGKILVLVDSADHHRDVYDIFRTNRSLNADRYRTYDDTVADTPTDAYTDTRRNL
>CP017968.3|APB76297.1|2437331_2438504_+|acyltransferase
MSQKERISEVALLRGLAFAAVVLQHSVAHYAVAQGARIQDGVLMTLLLLCSKFAVPVFVFITGMVLFYNYDGVLKYGTFLRKRFMDIIVPYIIWSLLYELGNQLAQSGGYIHPLDFFQKLLNGKSSYHLWYIVMIIQCYVLFPVFRYAVRHLSALLPSKWRPAALAGFGVLYILLMFAVGPVYQAMDKLQLPVITSWFTLYADRNVIYFFFYFVLGAAAGMNVKRWNAWVTKAQMIYWPLFIVITGYLLYEMIGQFQTPRGTVLSFNYLSLLRPVMAVYCVASIFVAYRVATWIAHKGGRAASMLTAIGTLSYGAYLMHAFMLRVTYYFDETFFADWSHVLRTLASFVLCMIFSVAGTWLLARLPLGKWIVGLRVRPRPTGGPPALQKQA
>CP017968.3|APB78421.2|2438668_2439307_+|maltose-O-acetyltransferase
MSGPDTRSVFPMKNIRSLCFLNNVVVNPYIEIGDYTYYDDNDNPLDFEKNVLYHFDFIGDKLKIGKFCAIAAKAKFIMNGANHNTNAFTTFPFGAFGGDWEVGLPNLSGGYKGDTVVGNDVWIGYNATIMPGVQIGDGAIIASNAVVTKDVRPYSIVGGNPAKLIRYRFDEETIAMLQTLKWWDWDIQKITEYIPVLTSNDTEALKQLIQSS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP017968_1	1.12\|2410543\|37\|CP017968\|PILER-CR,CRISPRCasFinder,CRT	2410543-2410579	37	CP017968.3	4844475-4844511	0	1.0

1. spacer 1.12|2410543|37|CP017968|PILER-CR,CRISPRCasFinder,CRT matches to position: 4844475-4844511, mismatch: 0, identity: 1.0

gacaggctggcttgtgtatccgtctcacggtgagcag	CRISPR spacer
gacaggctggcttgtgtatccgtctcacggtgagcag	Protospacer
*************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP017968_3	3.6\|2427701\|33\|CP017968\|CRISPRCasFinder,CRT	2427701-2427733	33	MT478991	Escherichia phage vB_EcoM_011D4, complete genome	74451-74483	8	0.758
CP017968_3	3.6\|2427701\|33\|CP017968\|CRISPRCasFinder,CRT	2427701-2427733	33	MF327006	Shigella phage Sf20, complete genome	59517-59549	8	0.758
CP017968_3	3.6\|2427701\|33\|CP017968\|CRISPRCasFinder,CRT	2427701-2427733	33	AY343333	Enterobacteria phage RB49, complete genome	123448-123480	8	0.758
CP017968_3	3.6\|2427701\|33\|CP017968\|CRISPRCasFinder,CRT	2427701-2427733	33	MK573636	Escherichia phage vB_EcoM_PHB13, partial genome	111380-111412	8	0.758
CP017968_3	3.6\|2427701\|33\|CP017968\|CRISPRCasFinder,CRT	2427701-2427733	33	MN655998	Escherichia phage E26, complete genome	123211-123243	9	0.727
CP017968_3	3.6\|2427701\|33\|CP017968\|CRISPRCasFinder,CRT	2427701-2427733	33	MH560358	Escherichia virus KFS-EC, complete genome	67484-67516	9	0.727
CP017968_3	3.6\|2427701\|33\|CP017968\|CRISPRCasFinder,CRT	2427701-2427733	33	MK327941	Escherichia phage vB_EcoM_G37-3, complete genome	125390-125422	9	0.727
CP017968_3	3.6\|2427701\|33\|CP017968\|CRISPRCasFinder,CRT	2427701-2427733	33	MK327932	Escherichia phage vB_EcoM_G2248, complete genome	130206-130238	9	0.727
CP017968_3	3.6\|2427701\|33\|CP017968\|CRISPRCasFinder,CRT	2427701-2427733	33	MK327935	Escherichia phage vB_EcoM_G2494, complete genome	126400-126432	9	0.727
CP017968_3	3.6\|2427701\|33\|CP017968\|CRISPRCasFinder,CRT	2427701-2427733	33	NC_012740	Enterobacteria phage JSE, complete genome	127188-127220	9	0.727

1. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to MT478991 (Escherichia phage vB_EcoM_011D4, complete genome) position: , mismatch: 8, identity: 0.758

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctctgcttttagcttgtctg	Protospacer
********.***************.    *..*

2. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to MF327006 (Shigella phage Sf20, complete genome) position: , mismatch: 8, identity: 0.758

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctctgcttttagcttgtctg	Protospacer
********.***************.    *..*

3. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to AY343333 (Enterobacteria phage RB49, complete genome) position: , mismatch: 8, identity: 0.758

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctctgcttttagcttgtctg	Protospacer
********.***************.    *..*

4. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to MK573636 (Escherichia phage vB_EcoM_PHB13, partial genome) position: , mismatch: 8, identity: 0.758

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctctgcttttagcttgtctg	Protospacer
********.***************.    *..*

5. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to MN655998 (Escherichia phage E26, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctatcatctctgcttttagcttgtctg	Protospacer
********..**************.    *..*

6. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to MH560358 (Escherichia virus KFS-EC, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctcggcttttagcttgtctg	Protospacer
********.******* *******.    *..*

7. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to MK327941 (Escherichia phage vB_EcoM_G37-3, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctcggcttttagcttgtctg	Protospacer
********.******* *******.    *..*

8. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to MK327932 (Escherichia phage vB_EcoM_G2248, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctcggcttttagcttgtctg	Protospacer
********.******* *******.    *..*

9. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to MK327935 (Escherichia phage vB_EcoM_G2494, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctcggcttttagcttgtctg	Protospacer
********.******* *******.    *..*

10. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to NC_012740 (Enterobacteria phage JSE, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctcggcttttagcttgtctg	Protospacer
********.******* *******.    *..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

926538 : 938272

Mollivirus(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
APB77575.1\|926538_927837_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	9.1e-20	33.1
APB77574.1\|928638_929520_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	3.7e-41	35.1
APB77573.1\|929578_929824_+	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FJ99	Synechococcus_phage	8.2e-07	37.7
APB77572.1\|929828_930518_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
APB77571.1\|930495_932739_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.3e-164	42.2
APB77570.1\|932723_934205_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.3e-51	31.3
APB77569.1\|934939_935980_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	4.2e-68	45.2
APB77568.1\|935979_936594_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.1e-22	36.4
APB77567.1\|936724_938272_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	3.4e-74	52.3

DBSCAN-SWA_2

1098076 : 1141300

Brevibacillus_phage(27.91%)

integrase,portal,terminase,plate

attL 1092924:1092938|attR 1110215:1110229

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1092924:1092938	attL	NA	NA	NA	NA
AUJ88410.1\|1098076_1099270_-\|integrase	site-specific integrase	A0A0C5AN64	Paenibacillus_phage	1.8e-59	37.4
APB77437.1\|1099345_1099813_-	hypothetical protein	R9TQI1	Paenibacillus_phage	1.8e-31	55.0
AUJ88411.1\|1099824_1100148_-	XRE family transcriptional regulator	A0A1B1P7L1	Bacillus_phage	8.3e-15	62.5
APB77436.1\|1100301_1100502_+	helix-turn-helix domain-containing protein	A0A2H4JAQ9	uncultured_Caudovirales_phage	7.2e-09	47.7
APB77435.2\|1100549_1100753_+	DNA-binding protein	NA	NA	NA	NA
APB77434.1\|1100767_1101547_+	phage antirepressor protein	A0A0C5ACA1	Paenibacillus_phage	5.1e-50	46.2
APB77433.1\|1101565_1101832_+	hypothetical protein	NA	NA	NA	NA
APB77432.1\|1101835_1102015_+	carboxypeptidase	NA	NA	NA	NA
APB77431.2\|1102015_1102645_-	DUF4145 domain-containing protein	Q7Y4L7	Streptococcus_phage	7.5e-52	56.0
APB77430.1\|1103061_1103256_+	hypothetical protein	NA	NA	NA	NA
APB77429.1\|1103565_1103784_+	hypothetical protein	NA	NA	NA	NA
APB77428.2\|1103868_1104639_+	recombinase	H7BUU1	unidentified_phage	5.3e-68	58.1
APB77427.1\|1104619_1105432_+	hypothetical protein	R9TMF6	Paenibacillus_phage	1.7e-96	69.5
APB77426.1\|1105448_1105874_+	primosomal replication protein N	A0A0K2CYR2	Paenibacillus_phage	2.1e-50	70.4
APB77425.1\|1105892_1106213_+	hypothetical protein	A0A0K2CY25	Paenibacillus_phage	1.7e-23	54.0
APB77424.1\|1106224_1107163_+	DUF4373 domain-containing protein	A0A2K9V3F2	Faecalibacterium_phage	1.2e-08	48.4
APB77423.2\|1107002_1107947_+	hypothetical protein	A0A1B1P7U2	Bacillus_phage	1.1e-30	32.0
APB77422.1\|1107971_1108334_+	hypothetical protein	NA	NA	NA	NA
APB77421.1\|1108525_1108714_+	ribosome-binding factor A	NA	NA	NA	NA
APB77420.1\|1108710_1108914_+	hypothetical protein	NA	NA	NA	NA
APB77419.1\|1108944_1109136_+	hypothetical protein	NA	NA	NA	NA
APB77418.1\|1109139_1109421_+	hypothetical protein	NA	NA	NA	NA
APB77417.1\|1109413_1109635_+	hypothetical protein	NA	NA	NA	NA
APB77416.1\|1109625_1109922_+	30S ribosomal protein S16	A0A0U4B080	Bacillus_phage	3.0e-11	41.0
APB77415.1\|1110025_1110736_+	RNA polymerase sigma factor RpoS	R9TNI5	Paenibacillus_phage	9.7e-24	32.7
1110215:1110229	attR	NA	NA	NA	NA
APB77414.1\|1110732_1111248_+	crossover junction endodeoxyribonuclease RuvC	A0A0C5ABQ1	Bacteriophage	8.3e-33	45.8
APB77413.1\|1111318_1111882_+	dUTPase	R9TQ23	Paenibacillus_phage	7.1e-46	55.2
APB77412.1\|1111885_1112089_+	hypothetical protein	NA	NA	NA	NA
APB77411.1\|1112091_1112376_+	hypothetical protein	NA	NA	NA	NA
APB77410.1\|1112402_1112624_+	hypothetical protein	NA	NA	NA	NA
APB77409.1\|1112702_1113380_+	hypothetical protein	Q6JII4	Burkholderia_virus	9.2e-24	30.2
APB77408.1\|1113753_1113960_+	hypothetical protein	NA	NA	NA	NA
APB77406.1\|1114443_1114974_+	hypothetical protein	A0A0A8IL13	Aurantimonas_phage	1.1e-08	40.3
APB77405.1\|1114970_1115300_+	V-type ATP synthase subunit C	A0A0A7AQ93	Bacillus_phage	4.8e-18	48.9
APB77404.1\|1115466_1115679_+	hypothetical protein	NA	NA	NA	NA
APB77403.1\|1115690_1116212_+	RNA polymerase sigma factor	A0A1L2JY33	Aeribacillus_phage	3.3e-29	43.6
APB77402.1\|1116562_1116763_+	50S ribosomal protein L35ae	NA	NA	NA	NA
APB77401.1\|1117059_1117269_-	KTSC domain-containing protein	NA	NA	NA	NA
APB77400.1\|1117542_1117794_+	hypothetical protein	A0A1S5SBT9	Streptococcus_phage	9.9e-16	46.5
APB77399.1\|1117872_1118151_+	K(+)-transporting ATPase subunit C	NA	NA	NA	NA
APB77398.1\|1118291_1118558_-	hypothetical protein	NA	NA	NA	NA
APB77397.1\|1118674_1118866_+	hypothetical protein	NA	NA	NA	NA
APB77396.1\|1118934_1119513_+\|terminase	terminase small subunit	U5PZD3	Bacillus_phage	1.3e-37	46.7
APB77395.1\|1119493_1120756_+\|terminase	PBSX family phage terminase large subunit	S5MC58	Brevibacillus_phage	1.3e-199	79.8
APB78471.1\|1120803_1122249_+\|portal	phage portal protein	S5MNW1	Brevibacillus_phage	9.2e-146	57.2
APB77394.1\|1122245_1123943_+	protein-export chaperone SecB	X5JAI9	Clostridium_phage	1.2e-93	48.0
APB77393.1\|1124110_1124452_+	hypothetical protein	NA	NA	NA	NA
APB77392.1\|1124574_1125180_+	hypothetical protein	S5MUG0	Brevibacillus_phage	8.2e-40	48.1
APB77391.1\|1125179_1125536_+	hypothetical protein	A0A1U9WQR7	Geobacillus_phage	5.2e-10	37.1
APB77390.1\|1125565_1126555_+	hypothetical protein	A0A218KCG4	Bacillus_phage	2.0e-67	42.2
APB77389.1\|1126572_1126767_+	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase	NA	NA	NA	NA
APB77388.1\|1126780_1127155_+	hypothetical protein	A0A0A7RTF6	Clostridium_phage	4.8e-14	37.4
APB77387.1\|1127156_1127528_+	hypothetical protein	S5M673	Brevibacillus_phage	2.5e-15	40.3
APB77386.1\|1127524_1127923_+	GTP cyclohydrolase I FolE2	S5MNW5	Brevibacillus_phage	8.4e-25	46.0
APB77385.1\|1127927_1128353_+	type I pantothenate kinase	S5MBU4	Brevibacillus_phage	1.1e-27	45.3
APB77384.1\|1128345_1128588_+	hypothetical protein	NA	NA	NA	NA
APB77383.1\|1128584_1129910_+	50S ribosomal protein L18e	S5MUG6	Brevibacillus_phage	2.8e-117	49.8
APB77382.1\|1129911_1130385_+\|portal	phage portal protein	A0A0K2CNG3	Brevibacillus_phage	5.4e-47	59.2
APB77381.1\|1130413_1130836_+\|portal	phage portal protein	X5JAB6	Clostridium_phage	7.0e-22	40.4
APB77380.1\|1131068_1131620_+	hypothetical protein	NA	NA	NA	NA
APB77379.1\|1131664_1134010_+	flagella biosynthesis chaperone FliJ	A0A0K2CP22	Brevibacillus_phage	1.2e-75	30.2
APB77378.1\|1134009_1134717_+	peptidoglycan-binding protein LysM	S5MUH0	Brevibacillus_phage	1.0e-41	43.5
APB78470.2\|1134721_1135720_+	50S ribosomal protein L24	S5MNC9	Brevibacillus_phage	8.4e-98	53.8
APB77377.1\|1135719_1136079_+	DUF2577 domain-containing protein	A0A0A7RTJ2	Clostridium_phage	6.4e-16	41.0
APB77376.1\|1136075_1136483_+	peptide deformylase	S5MTX3	Brevibacillus_phage	1.0e-25	46.5
APB77375.1\|1136475_1137543_+\|plate	baseplate J protein	H7BWD5	unidentified_phage	4.3e-76	44.8
APB77374.1\|1137529_1138084_+	DUF2313 domain-containing protein	S6BFJ0	Thermus_phage	4.3e-35	47.1
APB77373.1\|1140154_1141300_+	hypothetical protein	A0A0A0RNC0	Bacillus_phage	5.6e-05	24.2

DBSCAN-SWA_3

1384159 : 1400820

Bacillus_phage(50.0%)

portal,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
APB77187.1\|1384159_1384585_-	ImmA/IrrE family metallo-endopeptidase	A0A0S2SXM3	Bacillus_phage	4.4e-16	36.1
APB77186.1\|1384596_1385070_-	transcriptional regulator	S6C481	Thermus_phage	9.6e-20	40.4
APB77185.1\|1385401_1385878_+	transcriptional regulator	A0A0C5AJ96	Bacteriophage	9.0e-42	61.9
APB77184.1\|1386349_1387210_+	hypothetical protein	NA	NA	NA	NA
APB77183.1\|1387220_1387439_+	hypothetical protein	NA	NA	NA	NA
APB77182.1\|1387441_1388908_+\|tail	phage tail sheath protein	A0A0N7AEC6	Bacillus_phage	1.4e-72	36.3
APB77181.1\|1389030_1389438_+\|portal	phage portal protein	A0A2H4J032	uncultured_Caudovirales_phage	1.1e-40	61.8
APB77180.1\|1389514_1389949_+	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	1.8e-20	42.0
APB77179.1\|1390125_1391895_+	hypothetical protein	NA	NA	NA	NA
APB77178.1\|1391931_1392576_+	peptidoglycan-binding protein LysM	A0A0N7ACF7	Bacillus_phage	1.9e-42	50.3
APB77177.1\|1392572_1393550_+	phosphoenolpyruvate carboxylase	A0A0N6W8H4	Bacillus_phage	7.2e-78	47.4
APB77176.1\|1393542_1393950_+	hypothetical protein	A0A0N7ACD3	Bacillus_phage	1.7e-09	33.1
APB77175.2\|1393936_1394407_+	DUF2634 domain-containing protein	A0A0N7ACH4	Bacillus_phage	1.2e-25	39.2
APB77174.1\|1394406_1395558_+\|plate	Baseplate J family protein	S6AVU3	Thermus_phage	5.4e-40	34.4
APB77173.1\|1395550_1396225_+	DUF2313 domain-containing protein	S6BFJ0	Thermus_phage	2.0e-34	44.0
APB77172.1\|1396226_1398947_+	hypothetical protein	R4JDZ8	Bacillus_phage	8.3e-15	30.3
APB77171.1\|1398951_1399500_+	hypothetical protein	NA	NA	NA	NA
APB77170.1\|1399560_1399827_+	hypothetical protein	NA	NA	NA	NA
APB77169.1\|1399989_1400820_+	DUF2313 domain-containing protein	A0A090D815	Clostridium_phage	2.1e-14	36.2

DBSCAN-SWA_4

1936806 : 1946211

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
APB78444.2\|1936806_1937727_+	3-oxoacyl-ACP reductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	5.2e-54	43.0
APB76735.1\|1937847_1939650_+	PAS domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	2.5e-39	37.8
APB76734.1\|1939778_1940510_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	9.3e-38	35.3
APB76733.1\|1940669_1941794_+	CBS domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	5.0e-06	35.4
APB76732.1\|1941921_1942680_+	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.5e-14	32.4
APB76731.1\|1942719_1943379_+	phosphate transport system regulatory protein PhoU	NA	NA	NA	NA
APB76730.1\|1943556_1946211_+	DNA polymerase I	A0A060AM05	Listeria_phage	3.1e-46	29.6

DBSCAN-SWA_5

3187666 : 3195466

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
APB75828.1\|3187666_3188503_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-18	34.1
APB75827.1\|3188495_3189338_+	microcin C ABC transporter ATP-binding protein YejF	W6JKT0	Anomala_cuprea_entomopoxvirus	3.4e-15	25.1
APB75826.1\|3189304_3190615_+	MATE family efflux transporter	NA	NA	NA	NA
APB75825.1\|3190734_3192192_-	catalase	A0A2K9L0T1	Tupanvirus	9.3e-114	42.6
APB75824.1\|3192482_3193085_-	adenylyl-sulfate kinase	NA	NA	NA	NA
APB75823.1\|3193145_3194045_-	TIGR02452 family protein	G3MBH6	Bacillus_virus	6.5e-57	45.6
APB75822.1\|3194050_3194533_-	DUF1768 domain-containing protein	A0A0S0N9W6	Pseudomonas_phage	5.2e-45	58.1
APB75821.1\|3194560_3195466_-	nucleoside triphosphatase NudI	G3MA14	Bacillus_virus	1.2e-34	34.3

DBSCAN-SWA_6

3409683 : 3471118

Paenibacillus_phage(31.25%)

coat,protease,terminase,holin,tRNA,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
APB78385.2\|3409683_3410235_-	hypothetical protein	D0R7H9	Paenibacillus_phage	1.3e-55	78.0
APB75643.1\|3410237_3411188_-	glycoside hydrolase	D0R7H8	Paenibacillus_phage	5.0e-84	58.5
APB75642.1\|3411165_3411669_-\|holin	holin	D0R7H7	Paenibacillus_phage	8.5e-83	95.2
APB78384.1\|3411643_3411865_-	hypothetical protein	NA	NA	NA	NA
APB78383.1\|3411904_3412249_-	lipase chaperone	A0A2D1GQ65	Lysinibacillus_phage	3.1e-36	68.9
APB75641.1\|3412371_3412647_-	hypothetical protein	NA	NA	NA	NA
APB75640.1\|3412846_3413692_+	hypothetical protein	NA	NA	NA	NA
APB75639.1\|3414051_3414633_-	glucans biosynthesis glucosyltransferase MdoH	R9TPZ8	Paenibacillus_phage	3.9e-15	37.1
APB75638.1\|3414697_3416842_-	pyruvate, phosphate dikinase	A0A2H4JAC2	uncultured_Caudovirales_phage	2.4e-17	27.5
APB75637.1\|3416854_3417493_-	hypothetical protein	NA	NA	NA	NA
APB75636.1\|3417509_3418877_-	hypothetical protein	NA	NA	NA	NA
APB75635.1\|3418886_3419297_-	hypothetical protein	H6BJ44	Methylophilales_phage	9.2e-27	44.0
APB75634.1\|3419309_3419864_-\|tail	phage tail protein	NA	NA	NA	NA
APB75633.1\|3419864_3425267_-	transglycosylase	NA	NA	NA	NA
APB75632.1\|3425642_3425981_-	hypothetical protein	NA	NA	NA	NA
APB75631.1\|3426047_3426833_-	hypothetical protein	NA	NA	NA	NA
APB75630.1\|3426876_3427077_-	hypothetical protein	NA	NA	NA	NA
APB75629.1\|3427088_3427523_-	hypothetical protein	NA	NA	NA	NA
APB75628.1\|3427519_3428098_-	hypothetical protein	NA	NA	NA	NA
APB75627.1\|3428094_3428670_-	hypothetical protein	NA	NA	NA	NA
APB75626.1\|3428669_3429107_-	outer membrane assembly protein AsmA	NA	NA	NA	NA
APB75625.1\|3429096_3429486_-	flagellar hook protein FlgE	NA	NA	NA	NA
APB75624.1\|3429503_3430517_-\|capsid	minor capsid protein E	A0A1U9WQS4	Geobacillus_phage	2.3e-10	22.7
APB75623.1\|3430532_3430913_-	preprotein translocase subunit YajC	A0A139ZPE9	Marinitoga_camini_virus	1.0e-08	47.1
APB75622.1\|3430915_3432223_-	hypothetical protein	NA	NA	NA	NA
APB75621.1\|3432229_3433690_-	hypothetical protein	A0A0K2CP66	Brevibacillus_phage	5.4e-53	32.9
AUJ88441.1\|3433890_3433998_-	hypothetical protein	NA	NA	NA	NA
APB75620.1\|3434084_3434756_-	hypothetical protein	NA	NA	NA	NA
APB75619.1\|3437414_3437684_-	hypothetical protein	NA	NA	NA	NA
APB75618.2\|3437753_3438734_-\|protease	serine protease	NA	NA	NA	NA
AUJ88442.1\|3439033_3439432_-	hypothetical protein	A0A0K2CYZ6	Paenibacillus_phage	2.0e-10	43.0
APB75617.1\|3439356_3440814_-\|terminase	terminase B	A0A0A8WEW2	Clostridium_phage	5.6e-151	59.5
APB75616.1\|3440749_3442036_-	DNA translocase FtsK	M4ZS05	Bacillus_phage	1.7e-34	52.7
APB75615.2\|3442458_3443208_-	hypothetical protein	NA	NA	NA	NA
APB75614.2\|3443209_3444028_-	hypothetical protein	NA	NA	NA	NA
APB75613.1\|3444130_3444331_-	50S ribosomal protein L35ae	NA	NA	NA	NA
APB75612.1\|3444696_3444951_-	hypothetical protein	NA	NA	NA	NA
APB75611.1\|3445224_3445797_-	hypothetical protein	NA	NA	NA	NA
APB75610.1\|3446005_3446719_-	hypothetical protein	NA	NA	NA	NA
APB75609.1\|3447091_3447730_-	hypothetical protein	NA	NA	NA	NA
APB75608.1\|3447866_3448211_+	SpoVR family protein	NA	NA	NA	NA
APB75607.1\|3448477_3448963_-	hypothetical protein	NA	NA	NA	NA
APB75606.1\|3448975_3449287_-	YlbF/YmcA family competence regulator	NA	NA	NA	NA
APB75605.2\|3449320_3449668_-	hypothetical protein	NA	NA	NA	NA
APB75604.1\|3449839_3450040_-	hypothetical protein	NA	NA	NA	NA
APB75603.1\|3450511_3450946_+	hypothetical protein	NA	NA	NA	NA
APB75602.1\|3451064_3451286_+	hypothetical protein	NA	NA	NA	NA
APB75600.1\|3451863_3453192_-	type I glutamate--ammonia ligase	NA	NA	NA	NA
APB75599.1\|3453309_3453723_-	MerR family transcriptional regulator	NA	NA	NA	NA
APB75598.1\|3453806_3455060_-	methionine gamma-lyase	NA	NA	NA	NA
APB75597.1\|3455171_3456458_-	GTPase HflX	NA	NA	NA	NA
APB75596.1\|3456571_3457555_-	Holliday junction branch migration DNA helicase RuvB	G3MAX6	Bacillus_virus	1.3e-50	39.7
APB75595.1\|3457670_3458366_-	YdcF family protein	NA	NA	NA	NA
APB75594.1\|3458362_3458920_-	DUF402 domain-containing protein	NA	NA	NA	NA
APB75593.1\|3459083_3461744_-	carboxypeptidase/penicillin-binding protein 1A	NA	NA	NA	NA
APB75592.1\|3461934_3462180_-	RNA chaperone Hfq	NA	NA	NA	NA
APB75591.1\|3462200_3463181_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
APB75590.1\|3463164_3464013_-	16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ	NA	NA	NA	NA
APB75589.1\|3464025_3466200_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	2.0e-59	42.8
APB75588.1\|3466263_3469083_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	3.8e-31	23.1
APB75587.1\|3470560_3471118_-\|coat	outer spore coat protein CotE	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP017968

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection