CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP030177	Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 plasmid pIncFII.2, complete sequence	0 crisprs	RT	0	0	0
CP030175	Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 chromosome, complete genome	2 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	1	12	8
CP030176	Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 plasmid pIncFII.1, complete sequence	0 crisprs	RT	0	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP030175_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030175_1

943449-944942

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

24 spacers

cas3,cas8e

The CRISPR arrays of CP030175_1

>merge|CP030175|1|943449-944942|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCACAGGGGGGCGGTATGTTTTCGTACATACATGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGATGGGACAATCAGGATGGGCTATCACGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGTTTTCTGGAAAAATACGGCACCGCCCCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCCCTAGCGCCGAAGAACAGGAAAAGGCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGACATTTCCTGGGTGGGAGAGGTAGAAGATAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAATTTTTGTGTTGATGGACTGTTGCGCCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAATTTTTTCATATAAATACCATTCGGAATAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTATCGAAAGGAGTTACTCAGGGGGGAGACGTGTTCCCCGCGCCAGCGGGGATAAACCGCGATTGCAGCACGGGCACGATCCCAAGCGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGCGGAAGCGATCAGTGGTCTCGATACGGAAGTGTTCCCCGCGCCAGCGGAGATAAACCGGGCTCAGGTTGATGATTCTCATGAGACACAATGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTACTTACAGAGAACTACTGGCAAAAGAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAGCGGTTGCTATTGAGTCTCCCCTGAGCGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCTGATTACTATACATAGTCAGCGGGCAATAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGTGATCATGACGATCCAGAGCATATTGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGATTGAGAGAAGGGCTTGCTTAGCTTCCTTCCGTGTTCCCCGCGCCAGCGAGGATAAACCGTGGGGCTGTAAGGTCCGTTTAATATCCACTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCGTTAATTATATTACAATACAAATCATAACGTGTTCCCCGCGCCAGCGGGGATAAACCAGCCTTCCGGTACGTCGTCATTTTCAGTCAGCGGGTGTTCCCCGCGTCAGCGGGGATAAACCGCAAAATTAATGTCTAGGACCTTATTAAGTTACGTGTTCCCCGCGTCAGCGGGGATAAACCGGAAGGATTACCACCCCGGCAGCGCTCACCCGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTTAGCGCGTTACATCCGGTTTGAGGCTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCTAGCGGGGATAAACCGCCGGATGAAAACGCCTACCCGGAAGACTACGAGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP030175|1|1|943449-944881|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAGGGGGGCGGTATGTTTTCGTACATACAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGATGGGACAATCAGGATGGGCTATCACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGTTTTCTGGAAAAATACGGCACCGCCCCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCCCTAGCGCCGAAGAACAGGAAAAGGCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGACATTTCCTGGGTGGGAGAGGTAGAAGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATTTTTGTGTTGATGGACTGTTGCGCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATTTTTTCATATAAATACCATTCGGAATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATCGAAAGGAGTTACTCAGGGGGGAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATTGCAGCACGGGCACGATCCCAAGCGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCGGAAGCGATCAGTGGTCTCGATACGGAA
GTGTTCCCCGCGCCAGCGGAGATAAACCG	GGCTCAGGTTGATGATTCTCATGAGACACAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTACTTACAGAGAACTACTGGCAAAAGAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAGCGGTTGCTATTGAGTCTCCCCTGAGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTGATTACTATACATAGTCAGCGGGCAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTGATCATGACGATCCAGAGCATATTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC
GTGTTCCCCGCGCCAGCGAGGATAAACCG	TGGGGCTGTAAGGTCCGTTTAATATCCACTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGTTAATTATATTACAATACAAATCATAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCA	GCCTTCCGGTACGTCGTCATTTTCAGTCAGCGG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CAAAATTAATGTCTAGGACCTTATTAAGTTAC
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GAAGGATTACCACCCCGGCAGCGCTCACCCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG

>CP030175|1|1|943449-944942|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAGGGGGGCGGTATGTTTTCGTACATACAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGATGGGACAATCAGGATGGGCTATCACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGTTTTCTGGAAAAATACGGCACCGCCCCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCCCTAGCGCCGAAGAACAGGAAAAGGCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGACATTTCCTGGGTGGGAGAGGTAGAAGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATTTTTGTGTTGATGGACTGTTGCGCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATTTTTTCATATAAATACCATTCGGAATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATCGAAAGGAGTTACTCAGGGGGGAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATTGCAGCACGGGCACGATCCCAAGCGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCGGAAGCGATCAGTGGTCTCGATACGGAA
GTGTTCCCCGCGCCAGCGGAGATAAACCG	GGCTCAGGTTGATGATTCTCATGAGACACAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTACTTACAGAGAACTACTGGCAAAAGAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAGCGGTTGCTATTGAGTCTCCCCTGAGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTGATTACTATACATAGTCAGCGGGCAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTGATCATGACGATCCAGAGCATATTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC
GTGTTCCCCGCGCCAGCGAGGATAAACCG	TGGGGCTGTAAGGTCCGTTTAATATCCACTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGTTAATTATATTACAATACAAATCATAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCA	GCCTTCCGGTACGTCGTCATTTTCAGTCAGCGG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CAAAATTAATGTCTAGGACCTTATTAAGTTAC
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GAAGGATTACCACCCCGGCAGCGCTCACCCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCGGATGAAAACGCCTACCCGGAAGACTACGA
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP030175|1|1|943449-944942|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAGGGGGGCGGTATGTTTTCGTACATACAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGATGGGACAATCAGGATGGGCTATCACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGTTTTCTGGAAAAATACGGCACCGCCCCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCCCTAGCGCCGAAGAACAGGAAAAGGCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGACATTTCCTGGGTGGGAGAGGTAGAAGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATTTTTGTGTTGATGGACTGTTGCGCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATTTTTTCATATAAATACCATTCGGAATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATCGAAAGGAGTTACTCAGGGGGGAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATTGCAGCACGGGCACGATCCCAAGCGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCGGAAGCGATCAGTGGTCTCGATACGGAA
GTGTTCCCCGCGCCAGCGGAGATAAACCG	GGCTCAGGTTGATGATTCTCATGAGACACAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTACTTACAGAGAACTACTGGCAAAAGAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAGCGGTTGCTATTGAGTCTCCCCTGAGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTGATTACTATACATAGTCAGCGGGCAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTGATCATGACGATCCAGAGCATATTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC
GTGTTCCCCGCGCCAGCGAGGATAAACCG	TGGGGCTGTAAGGTCCGTTTAATATCCACTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGTTAATTATATTACAATACAAATCATAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCA	GCCTTCCGGTACGTCGTCATTTTCAGTCAGCGG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CAAAATTAATGTCTAGGACCTTATTAAGTTAC
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GAAGGATTACCACCCCGGCAGCGCTCACCCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCGGATGAAAACGCCTACCCGGAAGACTACGA
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP030175.1\|AXD03425.1\|934325_937025_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
CP030175.1\|AXD03423.1\|933013_933520_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
CP030175.1\|AXD03421.1\|931995_932532_-\|fimbrial-protein-SteF	unknown	unknown	gnl\|CDD\|185168
CP030175.1\|AXD03436.1\|950920_951163_-\|hypothetical-protein	unknown	unknown	unknown
CP030175.1\|AXD03424.1\|933539_934313_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185177
CP030175.1\|AXD03431.1\|945039_945837_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP030175.1\|AXD03429.1\|941046_942345_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP030175.1\|AXD03433.1\|946710_948510_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP030175.1\|AXD03430.1\|942480_943152_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP030175.1\|AXD03435.1\|950297_951032_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP030175.1\|AXD03438.1\|952578_955278_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP030175.1\|AXD03426.1\|937104_937692_-\|fimbrial-protein-SteA	unknown	unknown	gnl\|CDD\|185169
CP030175.1\|AXD07057.1\|946215_946386_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP030175.1\|AXD03428.1\|939326_940964_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP030175.1\|AXD03434.1\|948509_950222_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP030175.1\|AXD03437.1\|951244_952198_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP030175.1\|AXD03432.1\|945924_946287_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP030175.1\|AXD03439.1\|955874_957410_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP030175.1\|AXD03427.1\|938298_939099_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP030175.1\|AXD03422.1\|932528_932999_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179

Protein	Function_ID	Function_description	E-value
CP030175.1\|AXD03425.1\|934325_937025_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
CP030175.1\|AXD03423.1\|933013_933520_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
CP030175.1\|AXD03421.1\|931995_932532_-\|fimbrial-protein-SteF	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	1.10657e-119
CP030175.1\|AXD03424.1\|933539_934313_-\|fimbrial-protein	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
CP030175.1\|AXD03431.1\|945039_945837_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.00536e-101
CP030175.1\|AXD03429.1\|941046_942345_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP030175.1\|AXD03433.1\|946710_948510_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP030175.1\|AXD03430.1\|942480_943152_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP030175.1\|AXD03435.1\|950297_951032_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.5732e-139
CP030175.1\|AXD03438.1\|952578_955278_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	6.90906e-142
CP030175.1\|AXD03426.1\|937104_937692_-\|fimbrial-protein-SteA	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
CP030175.1\|AXD03437.1\|951244_952198_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP030175.1\|AXD03428.1\|939326_940964_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP030175.1\|AXD03434.1\|948509_950222_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP030175.1\|AXD03432.1\|945924_946287_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP030175.1\|AXD03439.1\|955874_957410_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP030175.1\|AXD03427.1\|938298_939099_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
CP030175.1\|AXD03422.1\|932528_932999_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.41178e-100

>CP030175.1|AXD03430.1|942480_943152_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP030175.1|AXD03429.1|941046_942345_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP030175.1|AXD03428.1|939326_940964_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP030175.1|AXD03427.1|938298_939099_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP030175.1|AXD03426.1|937104_937692_-|fimbrial-protein-SteA
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>CP030175.1|AXD03425.1|934325_937025_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSASPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAIFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>CP030175.1|AXD03424.1|933539_934313_-|fimbrial-protein
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>CP030175.1|AXD03423.1|933013_933520_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>CP030175.1|AXD03422.1|932528_932999_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>CP030175.1|AXD03421.1|931995_932532_-|fimbrial-protein-SteF
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQNCKTALANGVLVTFQGVEDSTLPGLLALESSSIANGFAIGIETADQHPLIINASQGTEFMLAEGNTIINLQAWLQKTSGENIMPGEFNASAMVNFEYQ
>CP030175.1|AXD03431.1|945039_945837_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP030175.1|AXD03432.1|945924_946287_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP030175.1|AXD07057.1|946215_946386_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP030175.1|AXD03433.1|946710_948510_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLTANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIGLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP030175.1|AXD03434.1|948509_950222_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP030175.1|AXD03435.1|950297_951032_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP030175.1|AXD03436.1|950920_951163_-|hypothetical-protein
MLLGTHSLAAFKQLELFWVYNQFKIRLPAGFFIAASIIIPRKDNHPSCSPHSRFSPKKRVSSSAIPGSHLRVVCVSPTDR
>CP030175.1|AXD03437.1|951244_952198_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>CP030175.1|AXD03438.1|952578_955278_-|CRISPR-associated-helicase/endonuclease-Cas3
MTQIEYLDYLCYWGKTDKSTKNIICNYHLLAYHCLDVAACGKYIIKNNIFNSCNILKECNISGTNAENWIIWFLASHDIGKFARGFQKYAEFPNSPLVSPVSGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYTDHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQIVLVSDTGEASYYSKRFGLVG
>CP030175.1|AXD03439.1|955874_957410_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLIKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRPDFQGAAWQMLIGILQCTIAPEDKEEWADIWHDGIEFEKWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNTLKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPDVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDGWLHPFSPYRQALKDPSAPWLALKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNNMSLWCFAFDMDNAKARCWYQHRIPLISVSHEEQFLAALNTVLVLASEALSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRALQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE

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Crispr_ID: CP030175_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030175_2

961847-962241

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP030175_2

>merge|CP030175|2|961847-962241|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGAGATATGACCGCCACTAATTAAGCTGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTATGGTGTACCCGGTCAGTTCTGTGATCATTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGTGTACCACGGCATGATGACGGCCAGCCATGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGTCGCTGTTAAACGTCCGCGTCGCGTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGAAGACAACTCCTGTCTTTCCATCACTCGAAGCGTGTTCCCCGCGCTAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGTCAGCGGGGATAAACAC

>CP030175|2|2|961847-962180|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGAGATATGACCGCCACTAATTAAGCTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTATGGTGTACCCGGTCAGTTCTGTGATCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTGTACCACGGCATGATGACGGCCAGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTCGCTGTTAAACGTCCGCGTCGCGTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGACAACTCCTGTCTTTCCATCACTCGAAGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG

>CP030175|2|2|961847-962241|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGAGATATGACCGCCACTAATTAAGCTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTATGGTGTACCCGGTCAGTTCTGTGATCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTGTACCACGGCATGATGACGGCCAGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTCGCTGTTAAACGTCCGCGTCGCGTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGACAACTCCTGTCTTTCCATCACTCGAAGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

>CP030175|2|2|961847-962241|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGAGATATGACCGCCACTAATTAAGCTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTATGGTGTACCCGGTCAGTTCTGTGATCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTGTACCACGGCATGATGACGGCCAGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTCGCTGTTAAACGTCCGCGTCGCGTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGACAACTCCTGTCTTTCCATCACTCGAAGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP030175.1\|AXD03444.1\|960548_961466_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP030175.1\|AXD03440.1\|957426_958029_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
CP030175.1\|AXD03445.1\|961468_961762_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP030175.1\|AXD03446.1\|962255_963302_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP030175.1\|AXD03436.1\|950920_951163_-\|hypothetical-protein	unknown	unknown	unknown
CP030175.1\|AXD03451.1\|967066_967378_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP030175.1\|AXD03455.1\|969612_970374_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP030175.1\|AXD03438.1\|952578_955278_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP030175.1\|AXD03448.1\|964470_965910_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP030175.1\|AXD03449.1\|965896_966502_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP030175.1\|AXD03452.1\|967396_968107_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP030175.1\|AXD03453.1\|968106_968586_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP030175.1\|AXD03437.1\|951244_952198_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP030175.1\|AXD03442.1\|959119_959845_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP030175.1\|AXD03443.1\|959844_960549_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
CP030175.1\|AXD03450.1\|966519_966876_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP030175.1\|AXD03454.1\|968582_969632_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP030175.1\|AXD03439.1\|955874_957410_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP030175.1\|AXD03441.1\|958045_959110_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP030175.1\|AXD03447.1\|963552_964461_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375

Protein	Function_ID	Function_description	E-value
CP030175.1\|AXD03444.1\|960548_961466_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.03247e-157
CP030175.1\|AXD03440.1\|957426_958029_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	3.64036e-38
CP030175.1\|AXD03445.1\|961468_961762_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.81067e-65
CP030175.1\|AXD03446.1\|962255_963302_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP030175.1\|AXD03453.1\|968106_968586_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP030175.1\|AXD03451.1\|967066_967378_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP030175.1\|AXD03438.1\|952578_955278_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	6.90906e-142
CP030175.1\|AXD03448.1\|964470_965910_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP030175.1\|AXD03449.1\|965896_966502_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	3.2499e-145
CP030175.1\|AXD03452.1\|967396_968107_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.96864e-119
CP030175.1\|AXD03455.1\|969612_970374_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
CP030175.1\|AXD03437.1\|951244_952198_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP030175.1\|AXD03442.1\|959119_959845_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.4012e-47
CP030175.1\|AXD03443.1\|959844_960549_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	1.06752e-88
CP030175.1\|AXD03450.1\|966519_966876_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP030175.1\|AXD03454.1\|968582_969632_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP030175.1\|AXD03439.1\|955874_957410_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP030175.1\|AXD03441.1\|958045_959110_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.25497e-121
CP030175.1\|AXD03447.1\|963552_964461_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0

>CP030175.1|AXD03445.1|961468_961762_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>CP030175.1|AXD03444.1|960548_961466_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSQPIAIPLPVALGDSGHRST
>CP030175.1|AXD03443.1|959844_960549_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLSQHSLFLIETKPFNSQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQQKPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>CP030175.1|AXD03442.1|959119_959845_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFIHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>CP030175.1|AXD03441.1|958045_959110_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MIMTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>CP030175.1|AXD03440.1|957426_958029_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAALCRILHPDAQKALLDWFATLSERYEHKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNRIRWANEYLSTSRGK
>CP030175.1|AXD03439.1|955874_957410_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLIKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRPDFQGAAWQMLIGILQCTIAPEDKEEWADIWHDGIEFEKWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNTLKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPDVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDGWLHPFSPYRQALKDPSAPWLALKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNNMSLWCFAFDMDNAKARCWYQHRIPLISVSHEEQFLAALNTVLVLASEALSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRALQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>CP030175.1|AXD03438.1|952578_955278_-|CRISPR-associated-helicase/endonuclease-Cas3
MTQIEYLDYLCYWGKTDKSTKNIICNYHLLAYHCLDVAACGKYIIKNNIFNSCNILKECNISGTNAENWIIWFLASHDIGKFARGFQKYAEFPNSPLVSPVSGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYTDHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQIVLVSDTGEASYYSKRFGLVG
>CP030175.1|AXD03437.1|951244_952198_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>CP030175.1|AXD03436.1|950920_951163_-|hypothetical-protein
MLLGTHSLAAFKQLELFWVYNQFKIRLPAGFFIAASIIIPRKDNHPSCSPHSRFSPKKRVSSSAIPGSHLRVVCVSPTDR
>CP030175.1|AXD03446.1|962255_963302_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP030175.1|AXD03447.1|963552_964461_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP030175.1|AXD03448.1|964470_965910_+|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWHSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP030175.1|AXD03449.1|965896_966502_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHHRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP030175.1|AXD03450.1|966519_966876_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP030175.1|AXD03451.1|967066_967378_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP030175.1|AXD03452.1|967396_968107_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLADHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP030175.1|AXD03453.1|968106_968586_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP030175.1|AXD03454.1|968582_969632_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRISKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP030175.1|AXD03455.1|969612_970374_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP030175_1	1.19\|944576\|33\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944576-944608	33	CP030175.1	3036024-3036056	0	1.0

1. spacer 1.19|944576|33|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to position: 3036024-3036056, mismatch: 0, identity: 1.0

gccttccggtacgtcgtcattttcagtcagcgg	CRISPR spacer
gccttccggtacgtcgtcattttcagtcagcgg	Protospacer
*********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030175_1	1.12\|944149\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944149-944180	32	NZ_CP041104	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid unnamed5, complete sequence	28156-28187	3	0.906
CP030175_1	1.12\|944149\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944149-944180	32	NC_010726	Klebsiella pneumoniae plasmid pMET-1, complete sequence	21319-21350	3	0.906
CP030175_1	1.12\|944149\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944149-944180	32	NZ_CP040266	Escherichia coli strain 631 plasmid pEc631_3, complete sequence	28780-28811	4	0.875
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	NZ_LR735422	Staphylococcus epidermidis strain none isolate Se_BPH0697 plasmid 2	56005-56036	6	0.812
CP030175_1	1.3\|943600\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	943600-943631	32	NZ_CP032326	Azospirillum brasilense strain MTCC4035 plasmid p5, complete sequence	89146-89177	7	0.781
CP030175_1	1.7\|943844\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	943844-943875	32	NZ_CP040855	Lactobacillus johnsonii strain G2A plasmid unnamed1	99372-99403	7	0.781
CP030175_1	1.7\|943844\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	943844-943875	32	NZ_CP040855	Lactobacillus johnsonii strain G2A plasmid unnamed1	124784-124815	7	0.781
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	NZ_CP027420	Staphylococcus cohnii strain FDAARGOS_334 plasmid unnamed1, complete sequence	32810-32841	7	0.781
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	NZ_CP015644	Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence	38951-38982	7	0.781
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	NZ_CP015644	Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence	58080-58111	7	0.781
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	NZ_CP017431	Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence	126493-126524	7	0.781
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	NZ_CP017431	Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence	145627-145658	7	0.781
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	NZ_CP017429	Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence	2082-2113	7	0.781
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	NZ_CP017429	Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence	21216-21247	7	0.781
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	NZ_CP016158	Staphylococcus simulans strain MR2 plasmid unnamed1	1228-1259	7	0.781
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	NZ_CP016158	Staphylococcus simulans strain MR2 plasmid unnamed1	20361-20392	7	0.781
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	AP013557	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S41-C64, * SEQUENCING IN PROGRESS *, 3 ordered pieces	12405-12436	7	0.781
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	KC465898	Pelagibacter phage HTVC010P, complete genome	26694-26725	7	0.781
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	AP013554	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S23-C36, * SEQUENCING IN PROGRESS *, 7 ordered pieces	14467-14498	7	0.781
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	AP013556	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S32-C64, * SEQUENCING IN PROGRESS *, 6 ordered pieces	21938-21969	7	0.781
CP030175_1	1.3\|943600\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	943600-943631	32	NZ_CP015988	Sphingobium sp. EP60837 plasmid pEP1, complete sequence	80012-80043	8	0.75
CP030175_1	1.4\|943661\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	943661-943692	32	NZ_CP019036	Massilia putida strain 6NM-7 plasmid unnamed1, complete sequence	64360-64391	8	0.75
CP030175_1	1.10\|944027\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944027-944058	32	MN310546	Microbacterium phage PhriedRice, complete genome	11760-11791	8	0.75
CP030175_1	1.10\|944027\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944027-944058	32	MT657337	Microbacterium phage Mazun, complete genome	11790-11821	8	0.75
CP030175_1	1.10\|944027\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944027-944058	32	MT310890	Microbacterium phage Phedro, complete genome	11749-11780	8	0.75
CP030175_1	1.10\|944027\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944027-944058	32	MT310889	Microbacterium phage Phractured, complete genome	11749-11780	8	0.75
CP030175_1	1.10\|944027\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944027-944058	32	MT310891	Microbacterium phage Pharky, complete genome	11749-11780	8	0.75
CP030175_1	1.15\|944332\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944332-944363	32	NZ_CP049142	Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence	53932-53963	8	0.75
CP030175_1	1.3\|943600\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	943600-943631	32	NC_010627	Paraburkholderia phymatum STM815 plasmid pBPHY02, complete sequence	193794-193825	9	0.719
CP030175_1	1.9\|943966\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	943966-943997	32	KY971609	Pseudomonas phage PspYZU01, complete genome	34015-34046	9	0.719
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	NZ_CP018210	Lactobacillus plantarum strain BLS41 plasmid pLPBLS41_1, complete sequence	16314-16345	9	0.719
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	MN693083	Marine virus AFVG_25M55, complete genome	1394-1425	9	0.719
CP030175_1	1.19\|944576\|33\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944576-944608	33	NZ_CP031163	Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence	413526-413558	9	0.727
CP030175_1	1.24\|944882\|32\|CP030175\|CRISPRCasFinder,CRT	944882-944913	32	NC_047851	Brevibacterium phage LuckyBarnes, complete genome	31262-31293	9	0.719
CP030175_2	2.3\|961998\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	961998-962029	32	NZ_CP030220	Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence	44085-44116	9	0.719
CP030175_1	1.12\|944149\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944149-944180	32	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	487192-487223	10	0.688
CP030175_1	1.15\|944332\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944332-944363	32	MH884508	Bacillus phage vB_BcoS-136, complete genome	104413-104444	10	0.688
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	168380-168411	10	0.688
CP030175_1	1.18\|944515\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	944515-944546	32	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	378504-378535	10	0.688
CP030175_2	2.3\|961998\|32\|CP030175\|PILER-CR,CRISPRCasFinder,CRT	961998-962029	32	NZ_CP024200	Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence	176332-176363	10	0.688
CP030175_2	2.6\|962181\|32\|CP030175\|CRISPRCasFinder,CRT	962181-962212	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
CP030175_2	2.6\|962181\|32\|CP030175\|CRISPRCasFinder,CRT	962181-962212	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688

1. spacer 1.12|944149|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041104 (Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid unnamed5, complete sequence) position: , mismatch: 3, identity: 0.906

gctacttacagagaactactggcaaaagaaac	CRISPR spacer
gctacttacagagaactcctggctaaagaaag	Protospacer
***************** ***** *******

2. spacer 1.12|944149|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NC_010726 (Klebsiella pneumoniae plasmid pMET-1, complete sequence) position: , mismatch: 3, identity: 0.906

gctacttacagagaactactggcaaaagaaac	CRISPR spacer
gctacttacagagaactcctggctaaagaaag	Protospacer
***************** ***** *******

3. spacer 1.12|944149|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040266 (Escherichia coli strain 631 plasmid pEc631_3, complete sequence) position: , mismatch: 4, identity: 0.875

gctacttacagagaactactggcaaaagaaac	CRISPR spacer
gctacctacagagaactactggctaaagagag	Protospacer
*****.***************** *****.*

4. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR735422 (Staphylococcus epidermidis strain none isolate Se_BPH0697 plasmid 2) position: , mismatch: 6, identity: 0.812

ttcgttaa--ttatattacaatacaaatcataac	CRISPR spacer
--tgttaaccttatattactaaacaaatcataat	Protospacer
  .*****  ********* * ***********.

5. spacer 1.3|943600|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032326 (Azospirillum brasilense strain MTCC4035 plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.781

----gtgttttctggaaaaatacggcaccgccccca	CRISPR spacer
cgtcggg----ctggaaaaatacggcctcgccccca	Protospacer
    * *    *************** .********

6. spacer 1.7|943844|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040855 (Lactobacillus johnsonii strain G2A plasmid unnamed1) position: , mismatch: 7, identity: 0.781

caattttttcatataaataccattcggaataa--	CRISPR spacer
caattttttcatagaaattccat--ggtgttact	Protospacer
************* **** ****  ** .* *

7. spacer 1.7|943844|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040855 (Lactobacillus johnsonii strain G2A plasmid unnamed1) position: , mismatch: 7, identity: 0.781

caattttttcatataaataccattcggaataa--	CRISPR spacer
caattttttcatagaaattccat--ggtgttact	Protospacer
************* **** ****  ** .* *

8. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027420 (Staphylococcus cohnii strain FDAARGOS_334 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

9. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015644 (Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

10. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015644 (Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

11. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017431 (Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

12. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017431 (Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

13. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017429 (Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

14. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017429 (Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

15. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016158 (Staphylococcus simulans strain MR2 plasmid unnamed1) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

16. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016158 (Staphylococcus simulans strain MR2 plasmid unnamed1) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ataatgaaatatattacaataaaaatcataat	Protospacer
 * .* ** ************ *********.

17. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to AP013557 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S41-C64, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ttctaattttatattacaatacagatcaaaac	Protospacer
***     ***************.**** ***

18. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to KC465898 (Pelagibacter phage HTVC010P, complete genome) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ttctaattttatattacaatacagatcaaaac	Protospacer
***     ***************.**** ***

19. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to AP013554 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S23-C36, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ttctagttttatattacaatacagatcaaaac	Protospacer
***     ***************.**** ***

20. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to AP013556 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S32-C64, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces) position: , mismatch: 7, identity: 0.781

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
ttctaattttatattacaatacagatcaaaac	Protospacer
***     ***************.**** ***

21. spacer 1.3|943600|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015988 (Sphingobium sp. EP60837 plasmid pEP1, complete sequence) position: , mismatch: 8, identity: 0.75

gtgttttctggaaaaatacggcaccgccccca	CRISPR spacer
cttccatatggaaaaatacagcaccgccgcca	Protospacer
 * .. * ***********.******** ***

22. spacer 1.4|943661|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019036 (Massilia putida strain 6NM-7 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cggccctagcgccgaagaacaggaaaaggcgg	CRISPR spacer
ggggctgggcgcggaagaacaggaacaggcgc	Protospacer
 ** *. .**** ************ *****

23. spacer 1.10|944027|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to MN310546 (Microbacterium phage PhriedRice, complete genome) position: , mismatch: 8, identity: 0.75

cagcggaagcgatcagtggtctcgatacggaa	CRISPR spacer
tcgcggacgcgatcagtggtcttgagcctgat	Protospacer
. ***** **************.**  * **

24. spacer 1.10|944027|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to MT657337 (Microbacterium phage Mazun, complete genome) position: , mismatch: 8, identity: 0.75

cagcggaagcgatcagtggtctcgatacggaa	CRISPR spacer
tcgcggacgcgatcagtggtcttgagcctgat	Protospacer
. ***** **************.**  * **

25. spacer 1.10|944027|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to MT310890 (Microbacterium phage Phedro, complete genome) position: , mismatch: 8, identity: 0.75

cagcggaagcgatcagtggtctcgatacggaa	CRISPR spacer
tcgcggacgcgatcagtggtcttgagcctgat	Protospacer
. ***** **************.**  * **

26. spacer 1.10|944027|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to MT310889 (Microbacterium phage Phractured, complete genome) position: , mismatch: 8, identity: 0.75

cagcggaagcgatcagtggtctcgatacggaa	CRISPR spacer
tcgcggacgcgatcagtggtcttgagcctgat	Protospacer
. ***** **************.**  * **

27. spacer 1.10|944027|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to MT310891 (Microbacterium phage Pharky, complete genome) position: , mismatch: 8, identity: 0.75

cagcggaagcgatcagtggtctcgatacggaa	CRISPR spacer
tcgcggacgcgatcagtggtcttgagcctgat	Protospacer
. ***** **************.**  * **

28. spacer 1.15|944332|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049142 (Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence) position: , mismatch: 8, identity: 0.75

gggtgatc------atgacgatccagagcatattgccc	CRISPR spacer
------tcttccagatgacgatcaaaagcatattgccc	Protospacer
      **      ********* *.************

29. spacer 1.3|943600|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NC_010627 (Paraburkholderia phymatum STM815 plasmid pBPHY02, complete sequence) position: , mismatch: 9, identity: 0.719

gtgttttctggaaaaatacggcaccgccccca	CRISPR spacer
ctttttgctggaacaatacggcaccgaggtct	Protospacer
 * *** ****** ************   .*

30. spacer 1.9|943966|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to KY971609 (Pseudomonas phage PspYZU01, complete genome) position: , mismatch: 9, identity: 0.719

cgattgcagcacgggcacgatcccaagcgtca	CRISPR spacer
cgcttgcagcacgggcccgatccacggtgcgg	Protospacer
** ************* ******  .*.*. .

31. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018210 (Lactobacillus plantarum strain BLS41 plasmid pLPBLS41_1, complete sequence) position: , mismatch: 9, identity: 0.719

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
accatgaattaaattacactacaaatcatgca	Protospacer
 .*.* ***** ****** **********.

32. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to MN693083 (Marine virus AFVG_25M55, complete genome) position: , mismatch: 9, identity: 0.719

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
cttctctattgtattacaatacaaattataga	Protospacer
.*. *. ***.***************.***.

33. spacer 1.19|944576|33|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031163 (Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence) position: , mismatch: 9, identity: 0.727

gccttccggtacgtcgtcattttcagtcagcgg	CRISPR spacer
gccttccggtagatcgtcattttcggcgtcacg	Protospacer
*********** .***********.*.     *

34. spacer 1.24|944882|32|CP030175|CRISPRCasFinder,CRT matches to NC_047851 (Brevibacterium phage LuckyBarnes, complete genome) position: , mismatch: 9, identity: 0.719

ccggatgaaaacgcctacccggaagactacga	CRISPR spacer
gcagatgaaatcgcctaccgggaagagctggc	Protospacer
 *.******* ******** ****** .  *

35. spacer 2.3|961998|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030220 (Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence) position: , mismatch: 9, identity: 0.719

gggtgtaccacggcatgatgacggccagccat-	CRISPR spacer
cggtgaacgacggcatgatgacgg-tgacggtg	Protospacer
 **** ** *************** ...* .*

36. spacer 1.12|944149|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 10, identity: 0.688

gctacttacagagaactactggcaaaagaaac	CRISPR spacer
aaagaatacagagaacgactggcaaaaaaata	Protospacer
.  .  ********** **********.**

37. spacer 1.15|944332|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to MH884508 (Bacillus phage vB_BcoS-136, complete genome) position: , mismatch: 10, identity: 0.688

gggtgatcatgacgatccagagcatattgccc	CRISPR spacer
tcaataccatgaccatccagagcaaattgcat	Protospacer
  .  *.****** ********** ***** .

38. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 10, identity: 0.688

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
aatatatattatattacaatataaaacatact	Protospacer
  ..*  **************.*** **** .

39. spacer 1.18|944515|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 10, identity: 0.688

ttcgttaattatattacaatacaaatcataac	CRISPR spacer
aatatatattatattacaatataaaacatact	Protospacer
  ..*  **************.*** **** .

40. spacer 2.3|961998|32|CP030175|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024200 (Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence) position: , mismatch: 10, identity: 0.688

gggtgtaccacggcatgatgacggccagccat	CRISPR spacer
tgatgttccccggcatgatgacggcctttggc	Protospacer
 *.*** ** ****************  . ..

41. spacer 2.6|962181|32|CP030175|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

42. spacer 2.6|962181|32|CP030175|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1659755 : 1668926

Enterobacteria_phage(66.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD04083.1\|1659755_1660703_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
AXD04084.1\|1660686_1661418_+	ABC transporter permease	NA	NA	NA	NA
AXD04085.1\|1661398_1661506_-	hypothetical protein	NA	NA	NA	NA
AXD04086.1\|1661565_1662297_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AXD04087.1\|1662519_1664205_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
AXD04088.1\|1664201_1664921_+	DNA-binding response regulator	NA	NA	NA	NA
AXD04089.1\|1664967_1665435_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AXD04090.1\|1665491_1666022_-	DUF1307 domain-containing protein	NA	NA	NA	NA
AXD04091.1\|1666193_1666652_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AXD04092.1\|1666892_1668926_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_2

1751903 : 1760767

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD04156.1\|1751903_1752797_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AXD04157.1\|1753128_1754148_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	2.4e-84	47.1
AXD04158.1\|1754184_1755309_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
AXD04159.1\|1755356_1756475_+	GDP-mannose 4,6-dehydratase	M1HXY1	Acanthocystis_turfacea_Chlorella_virus	5.3e-133	65.3
AXD07087.1\|1756477_1757443_+	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	7.9e-85	50.2
AXD04160.1\|1757445_1757946_+	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA
AXD04161.1\|1757938_1759387_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	2.7e-57	32.2
AXD04162.1\|1759390_1760767_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	7.6e-33	27.4

DBSCAN-SWA_3

1946790 : 1955100

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD04347.1\|1946790_1948041_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
AXD04348.1\|1948499_1949624_+	DUF3626 domain-containing protein	NA	NA	NA	NA
AXD04349.1\|1949783_1949978_+	hypothetical protein	NA	NA	NA	NA
AXD04350.1\|1950680_1951094_+	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	1.4e-19	38.6
AXD04351.1\|1951110_1951839_+	pertussis toxin-like subunit ArtA	A0A0U2KD26	Escherichia_phage	1.4e-62	53.3
AXD04352.1\|1952030_1952573_+	hypothetical protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
AXD04353.1\|1952721_1953099_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
AXD04354.1\|1953171_1953981_-	cytolethal distending toxin subunit B family protein	A5LH53	Enterobacteria_phage	1.2e-62	50.0
AXD04355.1\|1954860_1955100_-	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6

DBSCAN-SWA_4

2210189 : 2302084

113

Escherichia_phage(26.92%)

protease,terminase,holin,tail,portal,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD04619.1\|2210189_2212628_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.2e-219	49.7
AXD04620.1\|2212784_2213093_-	DUF1161 domain-containing protein	NA	NA	NA	NA
AXD04621.1\|2213196_2213907_+	YnfC family lipoprotein	NA	NA	NA	NA
AXD04622.1\|2213947_2214508_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
AXD04623.1\|2214543_2214885_-	DUF1283 family protein	NA	NA	NA	NA
AXD04624.1\|2215037_2215364_+	YnfA family protein	A0A218MNG8	uncultured_virus	2.2e-23	52.9
AXD04625.1\|2215485_2216700_+	D-galactonate dehydratase family member RspA	Q6A202	Oenococcus_phage	2.0e-45	28.7
AXD04626.1\|2216710_2217730_+	Zn-dependent oxidoreductase	NA	NA	NA	NA
AXD04627.1\|2217783_2217891_+	transporter	NA	NA	NA	NA
AXD04628.1\|2217919_2219194_-	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	4.7e-154	61.6
AXD07107.1\|2219228_2219480_-	DNA-binding protein	S4TND0	Salmonella_phage	2.2e-15	50.0
AXD04629.1\|2219552_2221727_-	exonuclease	S4TNL0	Salmonella_phage	5.7e-107	53.0
AXD04630.1\|2221748_2222063_-	hypothetical protein	NA	NA	NA	NA
AXD04631.1\|2222147_2222369_-	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	7.9e-33	83.6
AXD04632.1\|2222869_2223070_+	hypothetical protein	NA	NA	NA	NA
AXD04633.1\|2223038_2223404_-	hypothetical protein	NA	NA	NA	NA
AXD04634.1\|2223415_2223544_-	hypothetical protein	NA	NA	NA	NA
AXD07108.1\|2223733_2224102_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AXD04635.1\|2224270_2224552_+	hypothetical protein	H6WRX5	Salmonella_phage	1.8e-10	45.6
AXD04636.1\|2225075_2225909_+	helix-turn-helix domain-containing protein	Q8W642	Enterobacteria_phage	1.8e-32	62.2
AXD04637.1\|2226163_2226559_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.2e-18	43.0
AXD04638.1\|2226555_2226846_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	4.8e-38	83.9
AXD04639.1\|2226842_2227124_+	DUF4752 family protein	A0A2I6TCB0	Escherichia_phage	1.4e-37	86.7
AXD04640.1\|2227116_2227371_+	hypothetical protein	A0A0U2RK51	Escherichia_phage	1.4e-38	85.7
AXD04641.1\|2227363_2227678_+	hypothetical protein	A0A222YY67	Escherichia_phage	4.8e-52	85.4
AXD04642.1\|2227674_2228109_+	ead/Ea22-like family protein	Q8HAA6	Salmonella_phage	2.0e-40	83.7
AXD04643.1\|2228113_2228302_+	hypothetical protein	NA	NA	NA	NA
AXD04644.1\|2228441_2229014_+	DUF551 domain-containing protein	Q9KXA0	Enterobacteria_phage	8.6e-39	57.2
AXD04645.1\|2229013_2229409_+	hypothetical protein	A0A193GYM6	Enterobacter_phage	8.6e-38	60.8
AXD04646.1\|2229643_2229856_+	Hok/Gef family protein	A0A0P0ZAX5	Stx2-converting_phage	1.2e-27	94.3
AXD04647.1\|2230442_2230721_+	hypothetical protein	NA	NA	NA	NA
AXD04648.1\|2230722_2231766_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	5.1e-114	57.5
AXD04649.1\|2231777_2232152_+	RusA family crossover junction endodeoxyribonuclease	A5VW85	Enterobacteria_phage	1.9e-39	66.7
AXD04650.1\|2232141_2232525_+	antitermination protein	Q777W5	Enterobacteria_phage	3.2e-58	86.9
AXD04651.1\|2233113_2233320_+	hypothetical protein	NA	NA	NA	NA
AXD07109.1\|2233459_2233963_+	hypothetical protein	NA	NA	NA	NA
AXD04652.1\|2234151_2234577_+	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	2.3e-60	87.2
AXD04653.1\|2234573_2234726_+	DUF3927 domain-containing protein	S4TRP5	Salmonella_phage	2.3e-07	58.7
AXD04654.1\|2234818_2235208_+\|holin	holin	Q9MBZ5	Enterobacteria_phage	2.1e-36	63.1
AXD04655.1\|2235197_2235479_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.3e-16	49.4
AXD04656.1\|2235475_2236021_+	hypothetical protein	A0A0U2S643	Escherichia_phage	3.0e-89	83.4
AXD04657.1\|2236017_2236200_+	hypothetical protein	NA	NA	NA	NA
AXD07110.1\|2236390_2236768_+	hypothetical protein	Q6UAR9	Klebsiella_phage	7.9e-41	65.4
AXD04658.1\|2237017_2237518_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	6.1e-57	70.5
AXD04659.1\|2237517_2239635_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	4.7e-300	73.0
AXD07111.1\|2239631_2239850_+	hypothetical protein	NA	NA	NA	NA
AXD04660.1\|2239858_2241370_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	4.8e-145	54.1
AXD04661.1\|2241326_2243417_+\|protease	Clp protease ClpP	A0A1W6JT88	Pseudomonas_phage	1.1e-203	55.7
AXD04662.1\|2243444_2243819_+	DUF2190 family protein	NA	NA	NA	NA
AXD04663.1\|2243818_2244175_+	hypothetical protein	NA	NA	NA	NA
AXD04664.1\|2244196_2244877_+	hypothetical protein	A0A193GYC6	Enterobacter_phage	6.2e-12	29.1
AXD04665.1\|2244891_2245455_+	hypothetical protein	NA	NA	NA	NA
AXD04666.1\|2245447_2246068_+\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	2.1e-14	38.4
AXD04667.1\|2246106_2247576_+\|tail	phage tail protein	R9TMQ0	Vibrio_phage	4.7e-73	37.6
AXD04668.1\|2247572_2248079_+\|tail	phage tail protein	NA	NA	NA	NA
AXD04669.1\|2248130_2248430_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AXD04670.1\|2248532_2250191_+	hypothetical protein	A0A2I7R3J9	Vibrio_phage	5.2e-28	33.3
AXD04671.1\|2250187_2250667_+\|tail	phage tail protein	R9TMP6	Vibrio_phage	7.2e-23	42.0
AXD04672.1\|2250641_2250857_+\|tail	phage tail protein	R9TR63	Vibrio_phage	2.8e-11	51.4
AXD04673.1\|2250865_2251969_+	late control protein D	D4HTW7	Vibrio_phage	5.5e-34	36.4
AXD04674.1\|2251971_2252325_+\|plate	baseplate assembly protein	V5YTB2	Pseudomonas_phage	3.8e-21	49.1
AXD04675.1\|2252308_2253214_+\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	1.4e-64	49.3
AXD04676.1\|2253216_2253771_+\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	1.5e-24	43.8
AXD04677.1\|2253774_2254845_+	hypothetical protein	A0A0M3ULH6	Salmonella_phage	5.7e-44	33.6
AXD04678.1\|2254844_2255426_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.5e-67	66.5
AXD04679.1\|2255489_2258045_+	shikimate transporter	A0A0U2SH60	Escherichia_phage	1.5e-127	34.5
AXD04680.1\|2258059_2258638_+	DUF4376 domain-containing protein	Q8W610	Enterobacteria_phage	3.1e-68	67.9
AXD04681.1\|2258800_2259004_+	hypothetical protein	NA	NA	NA	NA
AXD04682.1\|2258981_2259452_+	DUF2335 domain-containing protein	A0A1B0YZW3	Pseudomonas_phage	2.6e-09	32.0
AXD04683.1\|2259494_2260058_-	ORF6N domain-containing protein	A0A0N7C203	Escherichia_phage	1.3e-52	75.2
AXD04684.1\|2260035_2260332_-	hypothetical protein	NA	NA	NA	NA
AXD04685.1\|2260762_2262058_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.1e-25	25.8
AXD04686.1\|2262201_2263668_+	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	5.6e-42	30.0
AXD04687.1\|2263734_2263938_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	2.9e-13	55.2
AXD04688.1\|2264118_2264805_-	GntR family transcriptional regulator	NA	NA	NA	NA
AXD04689.1\|2264934_2265681_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AXD04690.1\|2265819_2267862_+	peptidyl-dipeptidase Dcp	NA	NA	NA	NA
AXD04691.1\|2268205_2268388_+	stress-induced acidophilic repeat motif-containing protein	NA	NA	NA	NA
AXD04692.1\|2268507_2269035_-	2-oxo-tetronate isomerase	NA	NA	NA	NA
AXD04693.1\|2269461_2269854_+	TIGR00156 family protein	NA	NA	NA	NA
AXD04694.1\|2270201_2270297_-	hypothetical protein	NA	NA	NA	NA
AXD04695.1\|2270544_2271732_-	transporter	NA	NA	NA	NA
AXD04696.1\|2271959_2272862_+	O-acetylserine/cysteine exporter	NA	NA	NA	NA
AXD04697.1\|2272980_2273196_-	multiple antibiotic resistance regulatory periplasmic protein MarB	NA	NA	NA	NA
AXD04698.1\|2273224_2273659_-	MDR efflux pump AcrAB transcriptional activator MarA	D0R0F8	Streptococcus_phage	4.1e-09	32.3
AXD04699.1\|2273627_2274062_-	MarR family transcriptional regulator	NA	NA	NA	NA
AXD04700.1\|2274320_2274986_+	stress protection protein MarC	NA	NA	NA	NA
AXD04701.1\|2275032_2276223_-	sugar efflux transporter	NA	NA	NA	NA
AXD04702.1\|2276338_2277211_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXD04703.1\|2277313_2278702_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
AXD04704.1\|2278774_2279701_+	glutaminase	NA	NA	NA	NA
AXD04705.1\|2279700_2280060_+	DUF4186 domain-containing protein	NA	NA	NA	NA
AXD04706.1\|2280283_2281231_+	hypothetical protein	NA	NA	NA	NA
AXD04707.1\|2281286_2281829_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
AXD04708.1\|2282545_2283664_+	porin	Q1MVN1	Enterobacteria_phage	1.6e-113	58.5
AXD04709.1\|2283804_2284146_-	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
AXD04710.1\|2284158_2285046_-	ATP/GTP-binding protein	NA	NA	NA	NA
AXD04711.1\|2285033_2286095_-	hydrogenase-1 operon protein HyaF2	NA	NA	NA	NA
AXD04712.1\|2286112_2286523_-	hydrogenase	NA	NA	NA	NA
AXD04713.1\|2286519_2286819_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
AXD04714.1\|2286818_2287427_-	HyaD/HybD family hydrogenase maturation endopeptidase	NA	NA	NA	NA
AXD04715.1\|2287432_2288176_-	Ni/Fe-hydrogenase, b-type cytochrome subunit	NA	NA	NA	NA
AXD04716.1\|2288126_2289929_-	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA
AXD04717.1\|2289931_2291035_-	uptake hydrogenase small subunit	NA	NA	NA	NA
AXD04718.1\|2291463_2292555_+	linear amide C-N hydrolase	NA	NA	NA	NA
AXD04719.1\|2292600_2293392_+	FadR family transcriptional regulator	NA	NA	NA	NA
AXD04720.1\|2293450_2294476_-	alcohol dehydrogenase	NA	NA	NA	NA
AXD04721.1\|2294450_2295737_-	MFS transporter	NA	NA	NA	NA
AXD04722.1\|2295913_2297470_-	PhoPQ-regulated protein	NA	NA	NA	NA
AXD04723.1\|2297539_2298781_-	MFS transporter	NA	NA	NA	NA
AXD04724.1\|2298770_2300279_-	hypothetical protein	NA	NA	NA	NA
AXD04725.1\|2300323_2300812_+	MarR family transcriptional regulator	NA	NA	NA	NA
AXD04726.1\|2301004_2302084_+\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA	NA	NA	NA

DBSCAN-SWA_5

2429216 : 2436425

Escherichia_phage(60.0%)

tRNA,integrase

attL 2425617:2425631|attR 2438714:2438728

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2425617:2425631	attL	NA	NA	NA	NA
AXD04834.1\|2429216_2429651_+	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	9.4e-30	52.1
AXD04835.1\|2429703_2430042_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
AXD04836.1\|2430316_2432149_-	DUF4765 family protein	A0A0N7KZG3	Stx2-converting_phage	2.5e-47	34.7
AXD04837.1\|2432592_2432796_+	hypothetical protein	A0A0U2JGI6	Escherichia_phage	4.0e-23	74.2
AXD04838.1\|2432787_2433996_-	hypothetical protein	NA	NA	NA	NA
AXD04839.1\|2434001_2435027_-	hypothetical protein	NA	NA	NA	NA
AXD04840.1\|2435234_2435441_+\|integrase	integrase	A0A0U2JGI6	Escherichia_phage	1.6e-24	76.9
AXD04841.1\|2435489_2436425_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	8.0e-143	96.5
2438714:2438728	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2614414 : 2713664

121

Escherichia_phage(65.75%)

protease,terminase,holin,tail,plate,tRNA,integrase

attL 2665044:2665059|attR 2720040:2720055

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD05016.1\|2614414_2615110_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
AXD05017.1\|2615167_2617078_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	7.7e-92	32.7
AXD05018.1\|2617208_2617553_+	RidA family protein	NA	NA	NA	NA
AXD05019.1\|2617558_2617738_-	YoaH family protein	NA	NA	NA	NA
AXD05020.1\|2617818_2619183_+	aminodeoxychorismate synthase component 1	A0A0B5J984	Pandoravirus	4.3e-44	34.8
AXD05021.1\|2619186_2619765_+	CoA pyrophosphatase	NA	NA	NA	NA
AXD05022.1\|2620028_2621393_+	L-serine ammonia-lyase	NA	NA	NA	NA
AXD05023.1\|2621530_2623132_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
AXD05024.1\|2623153_2624713_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	9.5e-40	44.4
AXD05025.1\|2624700_2625036_-	hypothetical protein	NA	NA	NA	NA
AXD05026.1\|2625185_2626154_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
AXD05027.1\|2626206_2627007_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA
AXD05028.1\|2627019_2627871_+	PTS mannose transporter subunit IID	NA	NA	NA	NA
AXD05029.1\|2627929_2628388_+	DUF986 domain-containing protein	NA	NA	NA	NA
AXD07126.1\|2628743_2629364_+	manganese efflux pump MntP	NA	NA	NA	NA
AXD05030.1\|2629360_2630170_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA
AXD05031.1\|2630235_2631981_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA
AXD05032.1\|2632200_2632410_-	cold-shock protein CspC	A0A1W6JNX5	Morganella_phage	1.6e-22	78.1
AXD05033.1\|2632422_2632566_-	DUF2627 domain-containing protein	NA	NA	NA	NA
AXD05034.1\|2633214_2633502_-	hypothetical protein	NA	NA	NA	NA
AXD05035.1\|2633572_2633716_-	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA
AXD05036.1\|2633873_2634113_+	hypothetical protein	NA	NA	NA	NA
AXD05037.1\|2634324_2635116_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
AXD05038.1\|2635291_2636665_+	MFS transporter	NA	NA	NA	NA
AXD05039.1\|2636712_2637594_-\|protease	protease HtpX	NA	NA	NA	NA
AXD05040.1\|2637786_2639835_-\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
AXD05041.1\|2639854_2640541_-	RNA chaperone ProQ	NA	NA	NA	NA
AXD05042.1\|2640638_2641223_-	GAF domain-containing protein	NA	NA	NA	NA
AXD05043.1\|2641264_2642548_+	paraquat-inducible protein A	NA	NA	NA	NA
AXD05044.1\|2642510_2645150_+	MCE family protein	NA	NA	NA	NA
AXD07127.1\|2645227_2646667_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AXD05045.1\|2646781_2647021_+	DUF1480 family protein	NA	NA	NA	NA
AXD05046.1\|2647131_2647323_+	DUF1482 family protein	NA	NA	NA	NA
AXD05047.1\|2647341_2647992_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	1.2e-57	50.5
AXD05048.1\|2648215_2648380_-	hypothetical protein	NA	NA	NA	NA
AXD05049.1\|2648665_2649388_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
AXD05050.1\|2650071_2650467_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	7.0e-16	32.8
AXD05051.1\|2650795_2651272_+	hypothetical protein	NA	NA	NA	NA
AXD05052.1\|2651670_2652129_-	hypothetical protein	NA	NA	NA	NA
AXD05053.1\|2652400_2652958_-	hypothetical protein	NA	NA	NA	NA
AXD05054.1\|2653061_2653271_-	hypothetical protein	NA	NA	NA	NA
AXD05055.1\|2653300_2653600_-	hypothetical protein	NA	NA	NA	NA
AXD05056.1\|2653778_2654090_+	cytoplasmic protein	NA	NA	NA	NA
AXD05057.1\|2654086_2654506_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AXD05058.1\|2655645_2656065_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AXD05059.1\|2656193_2656388_-	hypothetical protein	NA	NA	NA	NA
AXD05060.1\|2656434_2656704_+	hypothetical protein	B6SCX2	Bacteriophage	1.8e-07	47.9
AXD05061.1\|2656869_2657010_+	hypothetical protein	NA	NA	NA	NA
AXD05062.1\|2657155_2657833_-	hypothetical protein	A0A218MNI5	uncultured_virus	7.5e-42	46.7
AXD05063.1\|2657839_2660020_-	E3 ubiquitin--protein ligase	Q9MBL9	Phage_Gifsy-2	1.2e-56	74.1
AXD05064.1\|2660138_2660273_-\|tail	phage tail protein	NA	NA	NA	NA
AXD05065.1\|2660275_2660635_+\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.0e-21	47.0
AXD05066.1\|2661055_2661619_-	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	8.7e-68	66.8
AXD05067.1\|2661627_2663904_-\|tail	phage tail protein	A0A0U2SH60	Escherichia_phage	1.2e-104	57.4
AXD05068.1\|2663967_2664549_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	7.8e-64	63.9
AXD05069.1\|2664765_2666088_-\|tail	tail fiber protein	A0A0U2SAV1	Escherichia_phage	1.0e-106	81.8
2665044:2665059	attL	NA	NA	NA	NA
AXD05070.1\|2666084_2666711_-	hypothetical protein	A0A0U2RK03	Escherichia_phage	3.5e-118	96.6
AXD05071.1\|2666694_2667921_-	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	3.3e-213	92.4
AXD07128.1\|2668176_2668482_+	hypothetical protein	NA	NA	NA	NA
AXD05072.1\|2668762_2669323_+	phage antirepressor Ant	A0A0U2QL80	Escherichia_phage	2.8e-82	83.9
AXD05073.1\|2669298_2669646_-	hypothetical protein	A0A0U2I1S2	Escherichia_phage	6.3e-61	96.5
AXD05074.1\|2669691_2670246_-	Rha family transcriptional regulator	A0A088CBJ5	Shigella_phage	1.9e-83	86.1
AXD05075.1\|2670967_2671681_-\|plate	phage baseplate protein	A0A0U2JTX5	Escherichia_phage	3.5e-122	93.7
AXD05076.1\|2671680_2672688_-	hypothetical protein	A0A0U2QL72	Escherichia_phage	6.7e-180	89.0
AXD05077.1\|2672687_2672954_-	hypothetical protein	A0A0U2JGJ3	Escherichia_phage	5.6e-41	89.8
AXD05078.1\|2672950_2673619_-	hypothetical protein	A0A0U2JGI7	Escherichia_phage	2.3e-115	92.3
AXD05079.1\|2675744_2676362_-	hypothetical protein	A0A0U2S634	Escherichia_phage	7.2e-92	82.4
AXD05080.1\|2676358_2676790_-	hypothetical protein	A0A0U2S616	Escherichia_phage	4.3e-75	99.3
AXD05081.1\|2676813_2678151_-	hypothetical protein	A0A0U2KD19	Escherichia_phage	2.8e-213	83.6
AXD05082.1\|2678150_2679095_-	hypothetical protein	A0A0U2SH76	Escherichia_phage	2.9e-156	88.2
AXD05083.1\|2679081_2679522_-	hypothetical protein	A0A0U2RTA8	Escherichia_phage	3.7e-66	82.8
AXD05084.1\|2679518_2679959_-	hypothetical protein	A0A0U2S646	Escherichia_phage	1.2e-77	99.3
AXD05085.1\|2679958_2680429_-	hypothetical protein	A0A0U2SAX6	Escherichia_phage	4.2e-84	99.4
AXD05086.1\|2680486_2681515_-	hypothetical protein	A0A0U2QQI2	Escherichia_phage	5.6e-190	99.4
AXD05087.1\|2681529_2682147_-	hypothetical protein	A0A0U2S600	Escherichia_phage	1.4e-108	91.2
AXD05088.1\|2682139_2683444_-	DUF2213 domain-containing protein	A0A0U2QW61	Escherichia_phage	1.9e-182	93.8
AXD07129.1\|2683424_2684144_-	hypothetical protein	A0A0U2I1R8	Escherichia_phage	1.1e-128	92.9
AXD05089.1\|2684202_2685639_-	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	1.1e-265	95.6
AXD05090.1\|2685657_2686986_-\|terminase	terminase	A0A0U2JTW9	Escherichia_phage	2.1e-261	98.4
AXD05091.1\|2686975_2688067_-\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	8.2e-131	85.9
AXD07131.1\|2688070_2688280_-	hypothetical protein	NA	NA	NA	NA
AXD05092.1\|2688338_2689190_-	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	3.2e-82	53.8
AXD07130.1\|2689179_2689971_-	transcriptional regulator	R4TG31	Halovirus	4.4e-49	43.2
AXD07132.1\|2690091_2690469_-	hypothetical protein	Q6UAR9	Klebsiella_phage	2.5e-42	66.9
AXD07133.1\|2690840_2690954_-	hypothetical protein	A0A2L1IV24	Escherichia_phage	2.5e-11	89.2
AXD05093.1\|2691109_2691688_-	hypothetical protein	A0A0U2S643	Escherichia_phage	6.3e-90	84.0
AXD05094.1\|2691684_2691966_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.3e-16	49.4
AXD05095.1\|2691955_2692345_-\|holin	holin	Q9MBZ5	Enterobacteria_phage	2.1e-36	63.1
AXD05096.1\|2692436_2692589_-	DUF3927 domain-containing protein	S4TRP5	Salmonella_phage	1.7e-07	58.7
AXD05097.1\|2692585_2693011_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	2.3e-60	87.2
AXD05098.1\|2694577_2695144_-	ORF6N domain-containing protein	A0A2R2Z302	Escherichia_phage	1.6e-45	72.8
AXD05099.1\|2695967_2696258_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	1.9e-39	76.0
AXD05100.1\|2696257_2696857_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	4.2e-105	91.5
AXD05101.1\|2697382_2697595_-	Hok/Gef family protein	A0A0P0ZAX5	Stx2-converting_phage	1.2e-27	94.3
AXD05102.1\|2697829_2698225_-	hypothetical protein	A0A193GYM6	Enterobacter_phage	8.6e-38	60.8
AXD05103.1\|2698419_2698731_-	hypothetical protein	A0A222YY67	Escherichia_phage	7.4e-53	86.4
AXD05104.1\|2698717_2698978_-	hypothetical protein	A0A0U2RK51	Escherichia_phage	1.4e-36	82.1
AXD05105.1\|2698970_2699252_-	DUF4752 family protein	A0A2I6TCB0	Escherichia_phage	1.4e-37	86.7
AXD05106.1\|2699248_2699539_-	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	4.8e-38	83.9
AXD05107.1\|2699535_2699931_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.9e-25	49.3
AXD05108.1\|2699961_2700708_-	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	1.7e-111	79.8
AXD05109.1\|2700714_2701509_-	hypothetical protein	G9L6A8	Escherichia_phage	3.4e-41	66.4
AXD05110.1\|2702222_2702636_-	hypothetical protein	NA	NA	NA	NA
AXD05111.1\|2702655_2703078_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	2.2e-68	94.3
AXD05112.1\|2703061_2703337_-	helix-turn-helix domain-containing protein	A0A0U2S629	Escherichia_phage	3.0e-21	63.4
AXD05113.1\|2703440_2703908_+	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	1.0e-53	66.9
AXD05114.1\|2704142_2704442_+	hypothetical protein	A0A0U2S618	Escherichia_phage	4.8e-09	44.4
AXD05115.1\|2705157_2705379_+	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	6.9e-37	97.3
AXD07134.1\|2705378_2705549_+	hypothetical protein	A0A0U2SHB5	Escherichia_phage	7.9e-17	71.4
AXD05116.1\|2705623_2705899_+	hypothetical protein	A0A0U2QW85	Escherichia_phage	1.2e-43	97.8
AXD05117.1\|2706000_2708628_+	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	6.1e-249	61.9
AXD05118.1\|2708620_2709439_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	7.6e-97	68.4
AXD07135.1\|2709495_2709690_+	restriction alleviation protein, Lar family	A0A0U2QQP4	Escherichia_phage	1.1e-25	78.1
AXD05119.1\|2709682_2709871_+	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	1.7e-23	88.5
AXD05120.1\|2709978_2710251_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	3.2e-12	44.6
AXD05121.1\|2710225_2711305_+\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	2.6e-97	52.4
AXD05122.1\|2711498_2711618_-	hypothetical protein	NA	NA	NA	NA
AXD05123.1\|2711675_2712029_-	DUF2511 domain-containing protein	NA	NA	NA	NA
AXD05124.1\|2712045_2712921_-	hypothetical protein	NA	NA	NA	NA
AXD05125.1\|2712921_2713296_-	CopC domain-containing protein YobA	NA	NA	NA	NA
AXD05126.1\|2713433_2713664_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
2720040:2720055	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2739433 : 2790471

Salmonella_phage(75.47%)

head,holin,tail,tRNA,integrase

attL 2732093:2732108|attR 2756458:2756473

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2732093:2732108	attL	NA	NA	NA	NA
AXD05151.1\|2739433_2741206_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
AXD07138.1\|2741530_2742097_+	hydrolase	NA	NA	NA	NA
AXD05152.1\|2742419_2743091_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	3.3e-82	61.7
AXD05153.1\|2744209_2746345_-\|integrase	integrase	NA	NA	NA	NA
AXD07139.1\|2746355_2747303_-\|integrase	site-specific integrase	A0A166YH27	Gordonia_phage	1.6e-05	28.9
AXD05154.1\|2747635_2748055_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.8e-36	59.8
AXD05155.1\|2748532_2748772_+	DinI family protein	K7P6H1	Enterobacteria_phage	4.4e-29	79.7
AXD05156.1\|2749159_2749681_+	hypothetical protein	NA	NA	NA	NA
AXD05157.1\|2749793_2750873_+	hypothetical protein	NA	NA	NA	NA
AXD05158.1\|2750998_2751376_-\|tail	phage tail protein	E7EKV7	Edwardsiella_phage	2.7e-33	60.7
AXD05159.1\|2752205_2752886_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.2e-127	98.2
AXD05160.1\|2752882_2754082_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	1.5e-213	97.2
AXD05161.1\|2754082_2754436_-	hypothetical protein	A0A0M4R339	Salmonella_phage	2.1e-59	97.4
AXD05162.1\|2754435_2755191_-	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	2.6e-128	92.8
AXD05163.1\|2755413_2755779_+	hypothetical protein	NA	NA	NA	NA
AXD05164.1\|2755798_2756131_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	6.5e-23	69.6
AXD05165.1\|2756127_2757201_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	5.5e-188	96.9
2756458:2756473	attR	NA	NA	NA	NA
AXD05166.1\|2757203_2757506_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	1.6e-52	99.0
AXD05167.1\|2757505_2758081_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	2.4e-97	100.0
AXD05168.1\|2758080_2760090_-	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	0.0e+00	98.4
AXD07140.1\|2760079_2760256_-	NTP pyrophosphohydrolase	A0A2H4J1A2	uncultured_Caudovirales_phage	4.7e-12	72.9
AXD05169.1\|2760267_2760720_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.3e-61	79.6
AXD05170.1\|2760723_2761164_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	5.9e-56	74.0
AXD05171.1\|2761175_2762321_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.7e-164	75.1
AXD05172.1\|2762324_2762888_-	hypothetical protein	A0A0M4R331	Salmonella_phage	8.9e-81	75.3
AXD05173.1\|2762862_2763252_-\|head,tail	head-tail adaptor	A0A0M3ULK0	Salmonella_phage	7.8e-68	98.4
AXD05174.1\|2763238_2763793_-	hypothetical protein	A0A0M4S631	Salmonella_phage	4.8e-95	100.0
AXD05175.1\|2763789_2764197_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.8e-73	100.0
AXD05176.1\|2764162_2764531_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
AXD05177.1\|2764572_2765514_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	2.0e-178	99.7
AXD05178.1\|2765525_2766023_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	3.0e-88	100.0
AXD05179.1\|2766027_2767260_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.9e-229	100.0
AXD07141.1\|2767274_2767808_-\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	2.1e-95	98.3
AXD05180.1\|2767896_2769366_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	4.9e-280	99.0
AXD05181.1\|2769365_2770988_-	TerL protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	99.4
AXD05182.1\|2770990_2771620_-	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	5.4e-111	100.0
AXD05183.1\|2771680_2772184_-	hypothetical protein	NA	NA	NA	NA
AXD05184.1\|2772286_2772808_-	DUF2514 family protein	NA	NA	NA	NA
AXD05185.1\|2772804_2773431_-	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	1.3e-93	79.7
AXD05186.1\|2773433_2773781_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	9.8e-46	80.4
AXD05187.1\|2774179_2774977_-	antitermination protein	A0A0M4S661	Salmonella_phage	6.8e-151	99.2
AXD05188.1\|2774966_2775113_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	1.2e-18	95.8
AXD05189.1\|2775109_2775721_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.1e-89	97.5
AXD05190.1\|2775723_2775930_-	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
AXD05191.1\|2775929_2776532_-	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
AXD05192.1\|2776614_2776836_-	hypothetical protein	NA	NA	NA	NA
AXD05193.1\|2776946_2777180_-	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
AXD05194.1\|2777471_2777762_-	hypothetical protein	NA	NA	NA	NA
AXD05195.1\|2778002_2778311_-	DUF977 family protein	H6WRX9	Salmonella_phage	1.4e-48	96.9
AXD05196.1\|2778321_2779071_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	4.3e-139	100.0
AXD05197.1\|2779073_2780057_-	hypothetical protein	H6WRX7	Salmonella_phage	8.9e-161	98.7
AXD05198.1\|2780141_2780462_-	hypothetical protein	A0A0M4RU01	Salmonella_phage	1.3e-52	100.0
AXD05199.1\|2780496_2780724_-	transcriptional regulator	H6WRX5	Salmonella_phage	1.7e-14	45.9
AXD05200.1\|2780829_2781264_+	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	2.5e-14	38.2
AXD05201.1\|2781560_2781719_+	hypothetical protein	H6WRX3	Salmonella_phage	4.5e-22	96.2
AXD05202.1\|2781740_2782091_+	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	1.6e-59	95.7
AXD05203.1\|2782217_2785145_+	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	99.4
AXD05204.1\|2785107_2786265_+	enterohemolysin	S4TTE8	Salmonella_phage	1.0e-216	99.7
AXD05205.1\|2786307_2786547_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AXD05206.1\|2786878_2787115_+	excisionase	Q8W657	Enterobacteria_phage	3.5e-39	93.6
AXD05207.1\|2787173_2788487_+	DUF3596 domain-containing protein	Q8W658	Enterobacteria_phage	4.6e-229	87.8
AXD05208.1\|2788465_2789239_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	5.5e-57	80.3
AXD05209.1\|2789291_2789687_+	hypothetical protein	NA	NA	NA	NA
AXD05210.1\|2789727_2790471_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.1e-25	30.9

DBSCAN-SWA_8

3897820 : 3933340

Vibrio_phage(46.34%)

transposase,head,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXD06205.1\|3897820_3898528_+	thiamine ABC transporter ATP-binding protein ThiQ	G3M9Y6	Bacillus_virus	1.8e-22	37.8
AXD06206.1\|3898604_3899321_-	protein mom	A0A0C4UQZ7	Shigella_phage	1.4e-126	93.5
AXD06207.1\|3899271_3899457_-	Com family DNA-binding transcriptional regulator	A0A0C4UQS3	Shigella_phage	2.9e-20	71.0
AXD06208.1\|3899580_3900156_-	DUF4376 domain-containing protein	Q8W610	Enterobacteria_phage	1.2e-72	73.6
AXD06209.1\|3900170_3902693_-	shikimate transporter	A0A0U2SH60	Escherichia_phage	4.7e-113	47.6
AXD06210.1\|3902679_3903210_-\|tail	phage tail protein	A0A0U2QV64	Escherichia_phage	4.1e-51	54.0
AXD06211.1\|3903227_3904223_-\|tail	phage tail protein	Q71TP5	Escherichia_phage	8.8e-47	46.5
AXD06212.1\|3904226_3904811_-	DUF2313 domain-containing protein	M4M9M8	Vibrio_phage	4.8e-45	45.1
AXD06213.1\|3904795_3905872_-\|plate	phage baseplate protein	A0A2I7S9E5	Vibrio_phage	1.5e-92	51.5
AXD06214.1\|3905861_3906314_-	hypothetical protein	A0A2I7S9F0	Vibrio_phage	9.8e-22	41.7
AXD06215.1\|3906310_3906847_-\|plate	phage baseplate assembly protein V	A0A2I7S9F6	Vibrio_phage	1.9e-24	39.7
AXD06216.1\|3906837_3907908_-\|tail	phage tail protein	M4M9L5	Vibrio_phage	7.6e-89	46.9
AXD06217.1\|3907907_3909182_-	multidrug DMT transporter	A0A2I7S9E8	Vibrio_phage	1.3e-74	38.3
AXD06218.1\|3909181_3910978_-\|tail	phage tail protein	M4MHE6	Vibrio_phage	1.2e-65	32.6
AXD06219.1\|3911064_3911460_-	hypothetical protein	M4MB64	Vibrio_phage	1.4e-19	47.9
AXD06220.1\|3911461_3911818_-\|tail	phage tail protein	A0A2P1A4D6	Alteromonadaceae_phage	2.9e-13	35.5
AXD06221.1\|3911827_3913303_-\|tail	phage tail protein	M1Q565	Vibrio_phage	2.7e-153	54.9
AXD06222.1\|3913302_3913503_-	DUF2635 domain-containing protein	NA	NA	NA	NA
AXD06223.1\|3913468_3914080_-	hypothetical protein	M1PJ94	Vibrio_phage	6.2e-35	43.8
AXD06224.1\|3914076_3914619_-	phage morphogenesis protein	A0A2I7S9D7	Vibrio_phage	1.7e-57	62.0
AXD06225.1\|3914618_3915056_-	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	3.7e-34	50.3
AXD06226.1\|3915061_3915367_-	hypothetical protein	NA	NA	NA	NA
AXD06227.1\|3915438_3916341_-\|head	phage head protein	M4MB71	Vibrio_phage	1.5e-98	57.2
AXD06228.1\|3916340_3917303_-	peptidase	M1Q578	Vibrio_phage	6.0e-77	46.6
AXD06229.1\|3917517_3918282_-	hypothetical protein	M4M9M5	Vibrio_phage	6.2e-93	60.1
AXD06230.1\|3918274_3919846_-	DUF935 domain-containing protein	A0A2I7S9K0	Vibrio_phage	6.2e-156	56.7
AXD07184.1\|3919842_3921369_-	hypothetical protein	M1NVQ0	Vibrio_phage	3.2e-197	68.4
AXD06231.1\|3921374_3921956_-	DUF3486 family protein	M1PJ86	Vibrio_phage	2.4e-49	55.5
AXD06232.1\|3921945_3922233_-	hypothetical protein	NA	NA	NA	NA
AXD07185.1\|3922235_3922523_-	ArsR family transcriptional regulator	A0A0C4UR00	Shigella_phage	2.7e-25	60.6
AXD06233.1\|3922528_3922834_-	DUF2730 family protein	M1Q558	Vibrio_phage	3.6e-12	39.4
AXD06234.1\|3922818_3923046_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
AXD06235.1\|3923042_3923651_-	hypothetical protein	NA	NA	NA	NA
AXD06236.1\|3923638_3924049_-	hypothetical protein	NA	NA	NA	NA
AXD06237.1\|3924032_3924260_-	hypothetical protein	A0A0C4UQR6	Shigella_phage	2.4e-24	67.1
AXD06238.1\|3924261_3924849_-	peptidoglycan-binding protein	K4PXD6	Edwardsiella_phage	1.5e-17	38.5
AXD06239.1\|3924948_3925446_-	hypothetical protein	NA	NA	NA	NA
AXD06240.1\|3925442_3925844_-	transcriptional regulator	A0A0C4UR27	Shigella_phage	5.1e-38	61.9
AXD06241.1\|3925840_3926392_-	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	7.1e-83	80.7
AXD06242.1\|3926369_3926705_-	hypothetical protein	NA	NA	NA	NA
AXD06243.1\|3926682_3926880_-	hypothetical protein	NA	NA	NA	NA
AXD06244.1\|3926872_3927115_-	hypothetical protein	NA	NA	NA	NA
AXD06245.1\|3927086_3927401_-	hypothetical protein	NA	NA	NA	NA
AXD06246.1\|3927441_3927966_-	host-nuclease inhibitor protein Gam	A0A0C4UQY5	Shigella_phage	1.5e-85	93.7
AXD06247.1\|3927984_3928272_-	hypothetical protein	C9DGL7	Escherichia_phage	2.2e-27	68.4
AXD06248.1\|3928284_3928704_-	hypothetical protein	A0A0C4UR25	Shigella_phage	2.5e-59	81.5
AXD06249.1\|3928724_3928994_-	hypothetical protein	C9DGL5	Escherichia_phage	2.5e-17	52.8
AXD06250.1\|3929026_3929254_-	hypothetical protein	A0A0C4UQY4	Shigella_phage	3.4e-31	85.3
AXD06251.1\|3929267_3930206_-	DNA transposition protein	A0A0C4UQR3	Shigella_phage	6.3e-156	89.4
AXD06252.1\|3930244_3932326_-\|transposase	transposase	A0A2D1GNK9	Pseudomonas_phage	5.3e-179	51.2
AXD06253.1\|3932328_3932577_-	DNA-binding protein	A0A2D1GNH1	Pseudomonas_phage	7.2e-35	86.6
AXD06254.1\|3932728_3933340_+	hypothetical protein	A0A2D1GNR8	Pseudomonas_phage	8.0e-43	56.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP030176

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

64576 : 109888

Stx2-converting_phage(17.65%)

protease,transposase,integrase

attL 56458:56473|attR 111198:111213

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
56458:56473	attL	NA	NA	NA	NA
AXD07285.1\|64576_65365_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.9e-52	92.9
AXD07286.1\|65868_66564_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AXD07287.1\|66834_67125_-	hypothetical protein	NA	NA	NA	NA
AXD07288.1\|67444_69559_-	colicin V synthesis protein	W8CYL7	Bacillus_phage	3.0e-36	27.6
AXD07289.1\|69533_70775_-	colicin V secretion protein CvaA	NA	NA	NA	NA
AXD07365.1\|70912_71386_-	toxin-activating lysine-acyltransferase	NA	NA	NA	NA
AXD07290.1\|71408_72959_-	MchC protein	NA	NA	NA	NA
AXD07366.1\|75081_75777_-	RepB family plasmid replication initiator protein	I3WF20	Macacine_betaherpesvirus	1.0e-25	32.5
AXD07367.1\|76385_77282_+	LysR family transcriptional regulator	NA	NA	NA	NA
AXD07291.1\|77259_78048_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXD07292.1\|78049_79348_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.2e-58	34.1
AXD07293.1\|79813_81223_-	GntP family permease	NA	NA	NA	NA
AXD07294.1\|81301_82609_-	histidinol dehydrogenase	NA	NA	NA	NA
AXD07295.1\|82788_83811_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	3.2e-28	30.3
AXD07296.1\|84250_85117_+	ParA family protein	NA	NA	NA	NA
AXD07297.1\|85116_86148_+	ParB/RepB/Spo0J family partition protein	S5WII0	Leptospira_phage	2.0e-09	27.5
AXD07298.1\|86147_86585_+	hypothetical protein	NA	NA	NA	NA
AXD07299.1\|86644_86860_-	hypothetical protein	NA	NA	NA	NA
AXD07300.1\|88075_90211_-\|integrase	integrase	NA	NA	NA	NA
AXD07368.1\|90221_91169_-\|integrase	site-specific integrase	A0A166YH27	Gordonia_phage	1.6e-05	28.9
AXD07301.1\|91498_91921_-	peptidase	A0A1W6JNS2	Morganella_phage	7.8e-29	52.4
AXD07302.1\|92140_92344_-	hypothetical protein	NA	NA	NA	NA
AXD07303.1\|92447_92918_+	hypothetical protein	NA	NA	NA	NA
AXD07304.1\|92910_93267_+	hypothetical protein	NA	NA	NA	NA
AXD07369.1\|93294_93486_-	hypothetical protein	NA	NA	NA	NA
AXD07305.1\|93801_95502_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	5.7e-171	53.2
AXD07306.1\|96082_96733_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.1e-21	35.3
AXD07307.1\|96732_96954_+	hypothetical protein	NA	NA	NA	NA
AXD07308.1\|97009_97423_+	DUF1380 domain-containing protein	NA	NA	NA	NA
AXD07309.1\|97494_98259_+	hypothetical protein	NA	NA	NA	NA
AXD07370.1\|98754_99189_+	antirestriction protein	NA	NA	NA	NA
AXD07310.1\|99255_99690_+	DUF1380 domain-containing protein	NA	NA	NA	NA
AXD07371.1\|99920_100175_+	hydroxyacid-oxoacid transhydrogenase	Q71T70	Escherichia_phage	3.3e-19	66.2
AXD07311.1\|100364_100817_+	N-acetyltransferase	NA	NA	NA	NA
AXD07312.1\|100973_101624_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	3.6e-17	42.4
AXD07313.1\|101623_101971_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	5.2e-47	77.6
AXD07314.1\|101990_103562_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.0e-170	59.1
AXD07373.1\|104173_104389_-	hypothetical protein	NA	NA	NA	NA
AXD07315.1\|104474_105032_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	4.3e-51	73.2
AXD07372.1\|105084_105327_+	DUF905 domain-containing protein	NA	NA	NA	NA
AXD07316.1\|105395_107426_+	chromosome partitioning protein ParB	G8DH78	Emiliania_huxleyi_virus	4.7e-15	29.3
AXD07317.1\|107467_107899_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
AXD07318.1\|107895_108624_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
AXD07319.1\|108616_108826_+	hypothetical protein	NA	NA	NA	NA
AXD07320.1\|108952_109888_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	5.5e-59	49.1
111198:111213	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP030175

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP030176

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection