CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP030792	Escherichia coli strain APEC O2-211 plasmid pAPEC-O2-211B, complete sequence	0 crisprs	NA	0	0
CP030793	Escherichia coli strain APEC O2-211 plasmid pAPEC-O2-211C, complete sequence	0 crisprs	NA	0	0
CP006834	Escherichia coli APEC O2-211 chromosome, complete genome	4 crisprs	csa3,WYL,DEDDh,DinG,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PD-DExK	18	13
CP030791	Escherichia coli strain APEC O2-211 plasmid pAPEC-O2-211A-ColV, complete sequence	0 crisprs	csa3	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP006834_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP006834_1

1763607-1763748

Orphan

Consensus_repeat	Method
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP006834_1

>merge|CP006834|1|1763607-1763748|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAGAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGCGCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

>CP006834|1|1|1763607-1763748|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	AAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGC
GCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

Protein	Signature genes	Signature genes Name	Protein_function
CP006834.2\|AKK38065.1\|1766737_1767955_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
CP006834.2\|AKK38062.1\|1761062_1762829_+\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|181594
CP006834.2\|AKK38066.1\|1768048_1769215_+\|succinyl-CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
CP006834.2\|AKK38072.1\|1775618_1775912_+\|cyd-operon-protein-YbgE	unknown	unknown	gnl\|CDD\|236721
CP006834.2\|AKK38071.1\|1775505_1775619_+\|cytochrome-bd-I-oxidase-subunit-CydX	unknown	unknown	gnl\|CDD\|227227
CP006834.2\|AKK38070.1\|1774351_1775491_+\|cytochrome-bd-I-ubiquinol-oxidase-subunit-2	unknown	unknown	gnl\|CDD\|184965
CP006834.2\|AKK38067.1\|1769214_1770084_+\|succinyl-CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
CP006834.2\|AKK38060.2\|1760332_1760722_+\|succinate-dehydrogenase-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|181900
CP006834.2\|AKK38056.1\|1754128_1754860_-\|molecular-chaperone	unknown	unknown	gnl\|CDD\|225663
CP006834.2\|AKK38057.2\|1754874_1757325_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
CP006834.2\|AKK38069.2\|1772767_1774336_+\|cytochrome-bd-I-ubiquinol-oxidase-subunit-1	unknown	unknown	gnl\|CDD\|185052
CP006834.2\|AKK38059.1\|1758340_1759624_-\|type-II-citrate-synthase	unknown	unknown	gnl\|CDD\|180164
CP006834.2\|AKK38063.1\|1762844_1763561_+\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
CP006834.2\|AKK38058.2\|1757384_1757951_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
CP006834.2\|AXF91926.1\|1759611_1759797_+\|hypothetical-protein	unknown	unknown	unknown
CP006834.2\|AKK38064.1\|1763921_1766723_+\|2-oxoglutarate-dehydrogenase-subunit-E1	unknown	unknown	gnl\|CDD\|236499
CP006834.2\|AKK38068.1\|1770323_1771439_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
CP006834.2\|AKK38061.1\|1760715_1761063_+\|succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit	unknown	unknown	gnl\|CDD\|181901
CP006834.2\|AKK38055.1\|1753070_1754132_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
CP006834.2\|AKK38073.1\|1776061_1776466_+\|acyl-CoA-thioester-hydrolase-YbgC	unknown	unknown	gnl\|CDD\|182742

Protein	Function_ID	Function_description	E-value
CP006834.2\|AKK38065.1\|1766737_1767955_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
CP006834.2\|AKK38062.1\|1761062_1762829_+\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|181594	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
CP006834.2\|AKK38066.1\|1768048_1769215_+\|succinyl-CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
CP006834.2\|AKK38072.1\|1775618_1775912_+\|cyd-operon-protein-YbgE	gnl\|CDD\|236721	PRK10588, PRK10588, hypothetical protein; Provisional.	9.30037e-57
CP006834.2\|AKK38071.1\|1775505_1775619_+\|cytochrome-bd-I-oxidase-subunit-CydX	gnl\|CDD\|227227	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown].	4.51563e-12
CP006834.2\|AKK38070.1\|1774351_1775491_+\|cytochrome-bd-I-ubiquinol-oxidase-subunit-2	gnl\|CDD\|184965	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II.	0
CP006834.2\|AKK38067.1\|1769214_1770084_+\|succinyl-CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
CP006834.2\|AKK38060.2\|1760332_1760722_+\|succinate-dehydrogenase-cytochrome-b556-subunit	gnl\|CDD\|181900	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit.	5.48862e-83
CP006834.2\|AKK38056.1\|1754128_1754860_-\|molecular-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	1.28071e-73
CP006834.2\|AKK38057.2\|1754874_1757325_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
CP006834.2\|AKK38069.2\|1772767_1774336_+\|cytochrome-bd-I-ubiquinol-oxidase-subunit-1	gnl\|CDD\|185052	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA.	0
CP006834.2\|AKK38059.1\|1758340_1759624_-\|type-II-citrate-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
CP006834.2\|AKK38063.1\|1762844_1763561_+\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	3.48257e-167
CP006834.2\|AKK38058.2\|1757384_1757951_-\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	2.40726e-36
CP006834.2\|AKK38064.1\|1763921_1766723_+\|2-oxoglutarate-dehydrogenase-subunit-E1	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
CP006834.2\|AKK38068.1\|1770323_1771439_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	6.43887e-18
CP006834.2\|AKK38061.1\|1760715_1761063_+\|succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit	gnl\|CDD\|181901	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit.	5.54037e-58
CP006834.2\|AKK38055.1\|1753070_1754132_-\|type-1-fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	0.000216347
CP006834.2\|AKK38073.1\|1776061_1776466_+\|acyl-CoA-thioester-hydrolase-YbgC	gnl\|CDD\|182742	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional.	7.48363e-91

>CP006834.2|AKK38063.1|1762844_1763561_+|succinate-dehydrogenase-iron-sulfur-subunit
MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
>CP006834.2|AKK38062.1|1761062_1762829_+|succinate-dehydrogenase-flavoprotein-subunit
MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESMTRRSVNMEPKLRPAFPPKIRTY
>CP006834.2|AKK38061.1|1760715_1761063_+|succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit
MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
>CP006834.2|AKK38060.2|1760332_1760722_+|succinate-dehydrogenase-cytochrome-b556-subunit
MIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW
>CP006834.2|AXF91926.1|1759611_1759797_+|hypothetical-protein
MYQPFKVSLAPYCVRLPELKFAFAHQPGFTRLLFGSPLCERGENLGTELWALAGKGSIDDE
>CP006834.2|AKK38059.1|1758340_1759624_-|type-II-citrate-synthase
MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYEKRDFKSDIKR
>CP006834.2|AKK38058.2|1757384_1757951_-|type-1-fimbrial-protein
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDKEVELGQVTTSHINQSHHSDAVAVDLRLVNCDLENSNNGSGGKISKVAVTFDSSAKTTGADPILNNTSTGEATGVGVRLMNKDQSNIVLGTATPDIDLAPTSSEQTLNFFAWMEQIDQATPVTPGAVTANATYVLDYK
>CP006834.2|AKK38057.2|1754874_1757325_-|fimbrial-biogenesis-outer-membrane-usher-protein
MNIYRLSFISCLVMAIPSALAVEFNLNVLDKSMRDRIDISLLKEKGGIAPGEYFVSVTVNNNQISNGQKIDWKKNGDQTIPCINDLLVDKFGLKPEVRQSLPRLNQCVDFSSRPEILFIFDQASQQLNITIPQAWLAWHSDNWTPPSTWKEGVAGVLMDYNLFASSYRPQDGSNSTNLNAYGTAGINAGAWRLRSDYQLNQTDSDDNHEQSGEISRTYLFRPLPQLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTVSHSGRVIYQKKVPPGPFIIDDLNQSVQGTLDVKVTEEDGRANNFQVSAASTPFLTRQGQVRYKLAAGQPRTSMSHQTENETFFSNEVSWGMLSNTSLYGGLLISGDDYHSAAMGIGQNMLWLGALSFDVTWASSQFDTQQDERGLSYRFNYSKQVDATDSTISLAAYRFSDRHFHSYANYLDHKYNNSDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGNWRDISISTSFNTTHYEDKDRDNQIYLSISLPFGNGGRVGYDMQNSSHSTTHRMSWNDTLDERNSWGMSTGLQSDRPDNGVQVSGNYQHLSSAGEWDISGTYAANDYSSVSSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNMNDLPDGVTVAENVIKETWIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDNSGISVGMVGEEGHAWLSGVAENQMLTVVWGDSQHCSLHLPEHMEDTANRLILPCH
>CP006834.2|AKK38056.1|1754128_1754860_-|molecular-chaperone
MTFMKGLPLLLLVASLCSHAALQPDRTRIVFNANDKATSLRVDNRSDKLPYLAYSWLENEKGEKSDDLLVALPPIQRLEPKATTQVRIVKQASTTKLPGDRETLFFYNMREIPPSPEKNSGHAVLQVAIQSRIKVFWRPAALRKKAGEKVELQLQVSQQGNQLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFSTVITNTGSYSGSQFYLGYMDDYGALRMTTLNCSGQCRLQAVEAKK
>CP006834.2|AKK38055.1|1753070_1754132_-|type-1-fimbrial-protein
MSAGKGVLLVICLVFLPLKSALALNCYFGTSGGTVEKSEAIQPFAVPGNAKPGDKIWESDDIKIPVYCDNNTNGNFESEHVYAWVNPYPGVQDRYYQLGVTYNGVDYDASLGKSRIDTNQCIDSKNINIYTPEQIIAMGWQNKICSGDPANIHMSRTFLARMRLYVKIREMPPHDYQSTLSDYIVVQFDGAGSVNEDPTAQNLKYHITGLENIRVLDCSVNFSISPETQVIDFGKFNLLDIRRHTMSKTFSIKTTKSQNDQCTDGFKVSSSFYTEETLIEEDKALLIGNGLKLRLLDENSSPYTFNKYSEYADFTSDMLIYEKTYTAELSSIPGTPIEAGPFDTVVLFKINYN
>CP006834.2|AKK38064.1|1763921_1766723_+|2-oxoglutarate-dehydrogenase-subunit-E1
MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGYMSVHQKQQQDLVNDALNVE
>CP006834.2|AKK38065.1|1766737_1767955_+|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQQASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKAPAKESAPVAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV
>CP006834.2|AKK38066.1|1768048_1769215_+|succinyl-CoA-ligase-subunit-beta
MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK
>CP006834.2|AKK38067.1|1769214_1770084_+|succinyl-CoA-ligase-subunit-alpha
MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK
>CP006834.2|AKK38068.1|1770323_1771439_+|tetratricopeptide-repeat-protein
MGVNSDVYAADVNIDILSATVKDKRIEGVSVTLQRNGAQSVSGTTNASGSVNLGSTFADDQDALLIVKKEGYSNLVVKCSCAGMTYAISPAMTSLDGMRVVLSWGEKPFDLDSHLIFPGGHIYFDSKEGTDANLDVDDTDSYGSETVTISKKHFGESYIYAVQDYSNKGLPNSNYLSASKAKVFVYVGSSLVRSYSVPAGKRGNIWTVFKLNPNGEFEDINSVTSANFNDTTLGVRDLATVIMPATGSSTPASPAMQNSGDTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGANAATMRANSYYNIAKIYETAGQDADALQYYQLALHDAIL
>CP006834.2|AKK38069.2|1772767_1774336_+|cytochrome-bd-I-ubiquinol-oxidase-subunit-1
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR
>CP006834.2|AKK38070.1|1774351_1775491_+|cytochrome-bd-I-ubiquinol-oxidase-subunit-2
MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY
>CP006834.2|AKK38071.1|1775505_1775619_+|cytochrome-bd-I-oxidase-subunit-CydX
MWYFAWILGTLLACSFGVITALALEHVESGKAGQEDI
>CP006834.2|AKK38072.1|1775618_1775912_+|cyd-operon-protein-YbgE
MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIVGLIFFFF
>CP006834.2|AKK38073.1|1776061_1776466_+|acyl-CoA-thioester-hydrolase-YbgC
MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ

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Crispr_ID: CP006834_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP006834_2

3379235-3379330

Orphan

Consensus_repeat	Method
CTCATTGTAGGCCGGATAAAACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP006834_2

>merge|CP006834|2|3379235-3379330|CRISPRCasFinder
CTCATTGTAGGCCGGATAAAACGCACAAGCGTTGCATCCGGCATATAAACCCATATAGATCAGTATGTTGCGCTCATTGTAGGCCGGATAAAACGC

>CP006834|2|2|3379235-3379330|CRISPRCasFinder
CTCATTGTAGGCCGGATAAAACGC	ACAAGCGTTGCATCCGGCATATAAACCCATATAGATCAGTATGTTGCG
CTCATTGTAGGCCGGATAAAACGC

Protein	Signature genes	Signature genes Name	Protein_function
CP006834.2\|AKK39549.1\|3374359_3375244_+\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|181614
CP006834.2\|AKK39552.1\|3376673_3377912_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|236967
CP006834.2\|AKK39558.1\|3384466_3385624_-\|DUF418-family-protein	unknown	unknown	gnl\|CDD\|182766
CP006834.2\|AKK39556.1\|3382006_3383005_-\|galactose-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|185293
CP006834.2\|AKK39554.1\|3379399_3380410_-\|galactoside-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181892
CP006834.2\|AKK39544.1\|3369575_3370604_-\|gentisate-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|131325
CP006834.2\|AKK39550.1\|3375393_3376113_+\|protein-SanA	unknown	unknown	gnl\|CDD\|182765
CP006834.2\|AXF92200.1\|3384314_3384518_+\|hypothetical-protein	unknown	unknown	unknown
CP006834.2\|AKK39557.1\|3383284_3384325_-\|HTH-type-transcriptional-regulator-GalS	unknown	unknown	gnl\|CDD\|236681
CP006834.2\|AKK39548.1\|3373534_3374230_+\|CidB/LrgB-family-autolysis-modulator	unknown	unknown	gnl\|CDD\|182666
CP006834.2\|AKK39560.1\|3386566_3387403_+\|S-formylglutathione-hydrolase-YeiG	unknown	unknown	gnl\|CDD\|178061
CP006834.2\|AXF92054.1\|3386462_3386639_+\|hypothetical-protein	unknown	unknown	unknown
CP006834.2\|AKK39559.1\|3385640_3386309_-\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|129173
CP006834.2\|AKK39547.1\|3373139_3373538_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234983
CP006834.2\|AKK39555.1\|3380425_3381946_-\|galactose/methyl-galactoside-ABC-transporter-ATP-binding-protein-MglA	unknown	unknown	gnl\|CDD\|182880
CP006834.2\|AKK39551.1\|3376115_3376355_+\|DUF2542-family-protein	unknown	unknown	gnl\|CDD\|151258
CP006834.2\|AKK39546.2\|3372100_3373009_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|274127
CP006834.2\|AKK39545.1\|3370615_3371974_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273327
CP006834.2\|AXF92053.1\|3386292_3386406_-\|phenylalanyl-tRNA-synthetase-subunit-beta	unknown	unknown	unknown
CP006834.2\|AKK39553.1\|3377905_3379141_+\|NAD-dependent-dihydropyrimidine-dehydrogenase-subunit-PreA	unknown	unknown	gnl\|CDD\|236237

Protein	Function_ID	Function_description	E-value
CP006834.2\|AKK39549.1\|3374359_3375244_+\|cytidine-deaminase	gnl\|CDD\|181614	PRK09027, PRK09027, cytidine deaminase; Provisional.	0
CP006834.2\|AKK39552.1\|3376673_3377912_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|236967	PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional.	4.15203e-171
CP006834.2\|AKK39558.1\|3384466_3385624_-\|DUF418-family-protein	gnl\|CDD\|182766	PRK10835, PRK10835, hypothetical protein; Provisional.	0
CP006834.2\|AKK39556.1\|3382006_3383005_-\|galactose-ABC-transporter-substrate-binding-protein	gnl\|CDD\|185293	PRK15395, PRK15395, galactose/glucose ABC transporter substrate-binding protein MglB.	0
CP006834.2\|AKK39554.1\|3379399_3380410_-\|galactoside-ABC-transporter-permease	gnl\|CDD\|181892	PRK09478, mglC, galactose/methyl galactoside ABC transporter permease MglC.	0
CP006834.2\|AKK39544.1\|3369575_3370604_-\|gentisate-1,2-dioxygenase	gnl\|CDD\|131325	TIGR02272, gentisate_12-dioxygenase, gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.	0
CP006834.2\|AKK39550.1\|3375393_3376113_+\|protein-SanA	gnl\|CDD\|182765	PRK10834, PRK10834, outer membrane permeability protein SanA.	0
CP006834.2\|AKK39560.1\|3386566_3387403_+\|S-formylglutathione-hydrolase-YeiG	gnl\|CDD\|178061	PLN02442, PLN02442, S-formylglutathione hydrolase.	6.56389e-137
CP006834.2\|AKK39557.1\|3383284_3384325_-\|HTH-type-transcriptional-regulator-GalS	gnl\|CDD\|236681	PRK10401, PRK10401, HTH-type transcriptional regulator GalS.	0
CP006834.2\|AKK39548.1\|3373534_3374230_+\|CidB/LrgB-family-autolysis-modulator	gnl\|CDD\|182666	PRK10711, PRK10711, hypothetical protein; Provisional.	1.74575e-153
CP006834.2\|AKK39559.1\|3385640_3386309_-\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|129173	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I. alternate names: Punch (Drosophila),GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	6.94767e-106
CP006834.2\|AKK39547.1\|3373139_3373538_+\|hypothetical-protein	gnl\|CDD\|234983	PRK01821, PRK01821, hypothetical protein; Provisional.	8.10764e-72
CP006834.2\|AKK39555.1\|3380425_3381946_-\|galactose/methyl-galactoside-ABC-transporter-ATP-binding-protein-MglA	gnl\|CDD\|182880	PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional.	0
CP006834.2\|AKK39551.1\|3376115_3376355_+\|DUF2542-family-protein	gnl\|CDD\|151258	pfam10808, DUF2542, Protein of unknown function (DUF2542). This family of proteins with unknown function appears to be restricted to Enterobacteriaceae. The family has a highly conserved sequence.	4.61848e-40
CP006834.2\|AKK39546.2\|3372100_3373009_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|274127	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria. [Energy metabolism, Other, Regulatory functions, DNA interactions].	4.91888e-49
CP006834.2\|AKK39545.1\|3370615_3371974_-\|MFS-transporter	gnl\|CDD\|273327	TIGR00895, transport_protein, benzoate transport. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.12365e-101
CP006834.2\|AKK39553.1\|3377905_3379141_+\|NAD-dependent-dihydropyrimidine-dehydrogenase-subunit-PreA	gnl\|CDD\|236237	PRK08318, PRK08318, NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.	0

>CP006834.2|AKK39553.1|3377905_3379141_+|NAD-dependent-dihydropyrimidine-dehydrogenase-subunit-PreA
MLTKDLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGVVFKTIGFFIANEVSPRFDHLVKEDTGFIGFKNMEQIAEHPLEDNLAALRRLKEDYPDKVLIASIMGENEQQWEELARLVQEAGADMIECNFSCPQMTSHAMGSDVGQSPELVEKYCRAVKRGSTLPMLAKMTPNIGDMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMPIVNGKSSISGYSGKAVKPIALRFIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGAATLQVTTGIMQYGYRIVEDMASGLSHYLADQGFDSLQDMVGLANNNIVPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDGGHQAMEWSEKTRTPHCNTEKCVGCLLCGHVCPVGCIDLGEVKFKKGEKEHPVTL
>CP006834.2|AKK39552.1|3376673_3377912_+|NAD(P)-dependent-oxidoreductase
MPQQNYLDELTPAFTPLLAIKEASRCLLCHDAPCSQACPAQTDPGKFIRSIYFRNFKGAAETIRENNALGAVCARVCPTEKLCQSGCTRAGVDTPIDIGRLQRFVTDFEQQTGMEIYQPGTKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAQAGGWLRNGIPQFRLPQSVLDAEIARIEKMGVTIKCNKEIGKTLTLEQLKAENRAVLVTVGLSSGSGLPLFEHSDVEIAVDFLQRARQAQGDISIPQSALIIGGGDVAMDVASTLKVLGCQAVTCVAREELDEFPASEKEFASARELGVSIIDGFTPVAVEGNKVTFKHVRLPGELTMAADKIILAVGQHARLDAFAELEPQRNTINTQNYQTRDPQVFAAGDIVEGDKTVVYAVKTGKEAAGAIHHYLEGACSC
>CP006834.2|AKK39551.1|3376115_3376355_+|DUF2542-family-protein
MDVQQFFVVAVFFLIPVFCFREAWKGWRAGAIDKRVKNAPEPVYVWRAKNPGLFFAYMVAYIGFGILSIGMIVYLIFYR
>CP006834.2|AKK39550.1|3375393_3376113_+|protein-SanA
MLKRVFLSLLVLIGLLLLTVLGLDRWMSWKTAPYIYDELQDLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHMGIQAQCYAVPSPKDMLSVRIREFAARFGALADLYIFKREPRFLGPLVPIPAMHQVPEDAQGYPAVTPEQLLELQKKQGK
>CP006834.2|AKK39549.1|3374359_3375244_+|cytidine-deaminase
MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDYLPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCHNIDRVLLA
>CP006834.2|AKK39548.1|3373534_3374230_+|CidB/LrgB-family-autolysis-modulator
MMANIWWSLPLTLIVFFAARKLAARYKFPLLNPLLVAMVVIIPFLMLTGISYDSYFKGSEVLNDLLQPAVVALAYPLYEQLHQIRARWKSIITICFIGSVVAMVTGTSVALLMGASPEIAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAMRIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVLCGIITSLIAPFLFPIILAVMG
>CP006834.2|AKK39547.1|3373139_3373538_+|hypothetical-protein
MSKTLNIIWQYLRAFVLIYACLYAGIFIASLLPVTIPGSIIGMLILFVLLALQILPAKWVNPGCYVLIRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAVSTLVVFLVVSWSSQLVHGERKVVGQKGSEE
>CP006834.2|AKK39546.2|3372100_3373009_+|LysR-family-transcriptional-regulator
MANWAQKLKLHHLQMLVALGEQGNLTHVARMMNITQPALSKWLSQLEDEIGLTLFERHSKGLRPTEGGKLLLQHAQRLINDMERSQHELARFKQGGLVGSLKIGCSPVATDCVSQAILHLLKEMPTLHLNIEEKVMTPLLQDLLAGSVDVVVGRIGGRALQLPLNYRVLYTEPVCFVARPEHPLAKYATLSWNDLANWRWIVWPTGTPIRISIDNALVDHGVMLPENTIESASMNVSTNLLQSSDMISILSLRLAQRYASQGQLVILNLPKIEQKGSVGVFWRNNETPSYALSQFLHFLQQN
>CP006834.2|AKK39545.1|3370615_3371974_-|MFS-transporter
MTQRRDLQALIDAAPVGKMQWRVIICCFLVVMLDGFDTAAIGFIAPDIRTHWQLTAGDLAPLFGAGLLGLTAGALLCGPLSDRFGRKRVIELCVFLFGALSLASAFSPDLQTLVFLRFLTGLGLGGAMPNTITMTSEYLPARRRGALVTLMFCGFTLGSAFGGIVSAQLVPVIGWHGILVLGGVLPLMLFVALLVVLPESPRWQVRRQLPQAVIAKTVSAIIRERYVDTHFYLIESASVTKGSIRQLFMGRQLPITLMLWVVFFMSLLIIYLLSSWMPTLLNHRGIDLQHASWVTAAFQIGGTLGALALGVLMDKFNPFRVLALSYAIGAVCIVMIGLSQDGLWLMALAIFGTGIGISGSQVGLNALTATLYPTQSRATGVSWSNAVGRCGAIVGSLSGGVMMAMNFSFDTLFFIIAVPAAISAVMLTQLITVVRQSTSVPDSLPHAGVVNE
>CP006834.2|AKK39544.1|3369575_3370604_-|gentisate-1,2-dioxygenase
MTDNNQNSREQFYQHISGQNLTPLWESLHHLVPKTPNANCAPAYWNYQEIRPLLLESGSLIGAKEAVRRVLVLENPALRGQSSITATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTSMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDLPLVNTLGCGFAEDYPEEQQPVTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDRSREVLHDLTRLGDADEWDGYKMRYVNPVTGGYPMPSMGAFLQLLPKGFASRVARTTDSTIYHVVEGSGQVTIGNETFSFSAKDIFVVPTWHGVSFQTTQDTVLFSFSDRPVQEALGLFREARY
>CP006834.2|AKK39554.1|3379399_3380410_-|galactoside-ABC-transporter-permease
MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVFPEMATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASPISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVGLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSLKYARKK
>CP006834.2|AKK39555.1|3380425_3381946_-|galactose/methyl-galactoside-ABC-transporter-ATP-binding-protein-MglA
MVSSTTPSSGEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGTILFQGKEIDFHSAKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRETKAIFDELDIDIDPRARVGTLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEVTVLRDGQWIATEPLAGLTMDKIIAMMVGRSLNQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRLASLHL
>CP006834.2|AKK39556.1|3382006_3383005_-|galactose-ABC-transporter-substrate-binding-protein
MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK
>CP006834.2|AKK39557.1|3383284_3384325_-|HTH-type-transcriptional-regulator-GalS
MITIRDVARQAGVSVATVSRVLNNSTLVSADTREAVMKAVSELDYRPNANAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALIVHSKALSDDELAQFMDNIPGMVLINRVVPGYAHRCVCLDNLSGARMATRMLLNNGHQRIGYLSSSHGIEDDAMRKAGWMSALKEQDIIPPESWIGTGTPDMPGGEAAMVELLGRNLQLTAVFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIPIARYTDPQLTTVRYPIASMAKLATELALQGAAGNIDPRASHCFMPTLVRRHSVATRQNAAAITNSTNQAM
>CP006834.2|AXF92200.1|3384314_3384518_+|hypothetical-protein
MVIIFTTCYEIAVNDCLLAAILSALNTGLRESSHSNGNGYSRFVNECDPDRYLDVLDIVGPAARKVN
>CP006834.2|AKK39558.1|3384466_3385624_-|DUF418-family-protein
MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITPQDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLFWDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRAWTPDASAILYEKYWKLHGGVEAIGNRADGVGNSLLALGAQYGWQLAGMMLIGAALMRSGWLKGQFSLRHYRRTGFVLVAIGVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPFQAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTTLFYHLGLFMQFDRLELLAFVIPVWLANIFFSVIWLRYFRQGPVEWLWRQLTLRAAGPTISKTSR
>CP006834.2|AKK39559.1|3385640_3386309_-|GTP-cyclohydrolase-I-FolE
MPSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAVRHHN
>CP006834.2|AXF92053.1|3386292_3386406_-|phenylalanyl-tRNA-synthetase-subunit-beta
MRRLTHNNQAVNQLNNFAPTQGGGVTPAGEIINAITQ
>CP006834.2|AXF92054.1|3386462_3386639_+|hypothetical-protein
MLKHRYANTEVKVTHSTLNKRYDEEIANNTTRSHAWKCSKSTAVLKAGSNAGDTTPVP
>CP006834.2|AKK39560.1|3386566_3387403_+|S-formylglutathione-hydrolase-YeiG
MEMLEEHRCFEGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPPPVLYWLSGLTCNDENFTTKAGAQRVAAELGIVLVMPDTSPRGEQVANDDGYDLGQGAGFYLNATQPPWATHYRMYDYLRDELPALVQSQFNVSDRCAISGHSMGGHGALIMALKNPGKYTSVSAFAPIVNPCSVPWGIKAFSSYLGEDKNAWLEWDSCALMYASNAQDAIPTLIDQGDNDQFLADQLQPAVLAEAARQKAWPMTLRIQPGYDHSYYFIASFIEDHLRFHAQYLLK

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Crispr_ID: CP006834_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP006834_3

4004757-4005822

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT

17 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP006834_3

>merge|CP006834|3|4004757-4005822|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTGACGCGGGGAACACACATGAATGTCGGTTCAGACCGTGTTTTTACCCGGTTTATCCCCGCTGGCGCGGGGAACACAGCGCGGGCTAATGTCTGCTCTGAATCATCACCGGTTTATCCCCGCTGGCGCGGGGAACACAACAGGCCGTATGAGGATCACTGGCACGGCGGCGGTTTATCCCCGCTGGCGCGGGGAACACTTTCTAGGAAACGACGTTATTTGCTCATCCCACGGTTTATCCCCGCTGGCGCGGGGAACACACCCCGAAATTAATGGCGACGGGGCGTTTACGCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCTCGGCGGCGGCTCTGCGCAACCGCGAAACGGTTTATCCCCGCTGGCGCGGGGAACACTCGTTTTGTTAGCCAGCCGTCGCGCACCAGTTCGGTTTATCCCCGCTGGCGCGGGGAACACGTATTGAATCGTGTGTAAATTCGCGGCGGCCCCGGTTTATCCCCGCTGGCGCGGGGAACACACATTCGCTGGCGCGGCTGAATCAACTATCGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGTGAGTATTTCGCGGACCTCTTCACCGATCGCGGTTTATCCCCGCTGGCGCGGGGAACACGCGGAAACAGCTTCCTGGATGCTGCGTTATTGCGGTTTATCCCCGCTGGCGCGGGGAACACGGTGGACGGATTTTCTATATTCCCACCGTCCGCGGTTTATCCCCGCTGGCGCGGGGAACACAGTGGCAGGCCGGTAATATGAAAACAACCGAGCGGTTTATCCCCGCTGGCGCGGGGAACACGACCGGTAGACCAACTCCGTCAGCTCGCCACCCGGTTTATCCCCGCTGGCGCGGGGAACACCCCTTGTATTTATGCACCCAGTCGTTTACCGACGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTAAGAGCAAAAACAGGGGTATGCAGACGCGGTTTATCCCCGCTGGCGCGGGGAACACCAAAAAATAAAATAAAGGCAATGTTTTCAATGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP006834|3|1|4004757-4005822|PILER-CR
CGGTTTATCCCCGCTGACGCGGGGAACAC	ACATGAATGTCGGTTCAGACCGTGTTTTTACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCGGGCTAATGTCTGCTCTGAATCATCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACAGGCCGTATGAGGATCACTGGCACGGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTCTAGGAAACGACGTTATTTGCTCATCCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCCCGAAATTAATGGCGACGGGGCGTTTACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCTCGGCGGCGGCTCTGCGCAACCGCGAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGTTTTGTTAGCCAGCCGTCGCGCACCAGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTATTGAATCGTGTGTAAATTCGCGGCGGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACATTCGCTGGCGCGGCTGAATCAACTATCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGAGTATTTCGCGGACCTCTTCACCGATCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGAAACAGCTTCCTGGATGCTGCGTTATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTGGACGGATTTTCTATATTCCCACCGTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGGCAGGCCGGTAATATGAAAACAACCGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GACCGGTAGACCAACTCCGTCAGCTCGCCACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCTTGTATTTATGCACCCAGTCGTTTACCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCTAAGAGCAAAAACAGGGGTATGCAGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAAAATAAAATAAAGGCAATGTTTTCAATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP006834|3|3|4004757-4005822|CRISPRCasFinder
CGGTTTATCCCCGCTGACGCGGGGAACAC	ACATGAATGTCGGTTCAGACCGTGTTTTTACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCGGGCTAATGTCTGCTCTGAATCATCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACAGGCCGTATGAGGATCACTGGCACGGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTCTAGGAAACGACGTTATTTGCTCATCCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCCCGAAATTAATGGCGACGGGGCGTTTACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCTCGGCGGCGGCTCTGCGCAACCGCGAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGTTTTGTTAGCCAGCCGTCGCGCACCAGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTATTGAATCGTGTGTAAATTCGCGGCGGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACATTCGCTGGCGCGGCTGAATCAACTATCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGAGTATTTCGCGGACCTCTTCACCGATCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGAAACAGCTTCCTGGATGCTGCGTTATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTGGACGGATTTTCTATATTCCCACCGTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGGCAGGCCGGTAATATGAAAACAACCGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GACCGGTAGACCAACTCCGTCAGCTCGCCACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCTTGTATTTATGCACCCAGTCGTTTACCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCTAAGAGCAAAAACAGGGGTATGCAGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAAAATAAAATAAAGGCAATGTTTTCAATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP006834|3|1|4004757-4005822|CRT
CGGTTTATCCCCGCTGACGCGGGGAACAC	ACATGAATGTCGGTTCAGACCGTGTTTTTACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCGGGCTAATGTCTGCTCTGAATCATCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACAGGCCGTATGAGGATCACTGGCACGGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTCTAGGAAACGACGTTATTTGCTCATCCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCCCGAAATTAATGGCGACGGGGCGTTTACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCTCGGCGGCGGCTCTGCGCAACCGCGAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGTTTTGTTAGCCAGCCGTCGCGCACCAGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTATTGAATCGTGTGTAAATTCGCGGCGGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACATTCGCTGGCGCGGCTGAATCAACTATCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGAGTATTTCGCGGACCTCTTCACCGATCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGAAACAGCTTCCTGGATGCTGCGTTATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTGGACGGATTTTCTATATTCCCACCGTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGGCAGGCCGGTAATATGAAAACAACCGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GACCGGTAGACCAACTCCGTCAGCTCGCCACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCTTGTATTTATGCACCCAGTCGTTTACCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCTAAGAGCAAAAACAGGGGTATGCAGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAAAATAAAATAAAGGCAATGTTTTCAATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP006834.2\|AKK40133.1\|4000070_4000394_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP006834.2\|AKK40136.1\|4002477_4003386_-\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP006834.2\|AKK40143.2\|4010120_4011683_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP006834.2\|AKK40131.1\|3998836_3999547_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP006834.2\|AKK40130.1\|3998357_3998837_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP006834.2\|AKK40144.1\|4011780_4014438_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP006834.2\|AKK40141.1\|4008517_4009573_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
CP006834.2\|AKK40129.1\|3997311_3998361_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP006834.2\|AKK40137.1\|4003637_4004675_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP006834.2\|AKK40135.1\|4001048_4002476_-\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP006834.2\|AKK40128.1\|3996569_3997331_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP006834.2\|AKK40138.1\|4005918_4006212_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP006834.2\|AKK40134.1\|4000443_4001049_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP006834.2\|AKK40140.1\|4007760_4008507_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP006834.2\|AKK40132.1\|3999565_3999877_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP006834.2\|AKK40142.1\|4009587_4010124_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP006834.2\|AKK40146.1\|4015091_4015826_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP006834.2\|AKK41758.1\|4007128_4007779_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP006834.2\|AKK40145.1\|4014675_4014828_-\|type-I-toxin-antitoxin-system-hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
CP006834.2\|AKK40139.1\|4006208_4007132_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693

Protein	Function_ID	Function_description	E-value
CP006834.2\|AKK40133.1\|4000070_4000394_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
CP006834.2\|AKK40136.1\|4002477_4003386_-\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP006834.2\|AKK40143.2\|4010120_4011683_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP006834.2\|AKK40131.1\|3998836_3999547_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.47016e-121
CP006834.2\|AKK40130.1\|3998357_3998837_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	5.30213e-104
CP006834.2\|AKK40144.1\|4011780_4014438_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	8.62912e-179
CP006834.2\|AKK40141.1\|4008517_4009573_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	3.45361e-154
CP006834.2\|AKK40129.1\|3997311_3998361_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP006834.2\|AKK40137.1\|4003637_4004675_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP006834.2\|AKK40135.1\|4001048_4002476_-\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP006834.2\|AKK40128.1\|3996569_3997331_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
CP006834.2\|AKK40138.1\|4005918_4006212_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	3.0872e-65
CP006834.2\|AKK40134.1\|4000443_4001049_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.12214e-148
CP006834.2\|AKK40140.1\|4007760_4008507_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.00414e-48
CP006834.2\|AKK40132.1\|3999565_3999877_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	2.23098e-61
CP006834.2\|AKK40142.1\|4009587_4010124_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	4.62446e-29
CP006834.2\|AKK40146.1\|4015091_4015826_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.40583e-137
CP006834.2\|AKK41758.1\|4007128_4007779_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	3.43159e-91
CP006834.2\|AKK40145.1\|4014675_4014828_-\|type-I-toxin-antitoxin-system-hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
CP006834.2\|AKK40139.1\|4006208_4007132_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.11358e-157

>CP006834.2|AKK40137.1|4003637_4004675_+|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>CP006834.2|AKK40136.1|4002477_4003386_-|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>CP006834.2|AKK40135.1|4001048_4002476_-|sulfate-adenylyltransferase
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFSGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>CP006834.2|AKK40134.1|4000443_4001049_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTPQQREQHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>CP006834.2|AKK40133.1|4000070_4000394_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>CP006834.2|AKK40132.1|3999565_3999877_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNNDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>CP006834.2|AKK40131.1|3998836_3999547_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKHVVIAISPGDSRFAQLPLANHPQITVVDGGEERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAETGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>CP006834.2|AKK40130.1|3998357_3998837_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYALGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>CP006834.2|AKK40129.1|3997311_3998361_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVMEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAEETELQTLLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>CP006834.2|AKK40128.1|3996569_3997331_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>CP006834.2|AKK40138.1|4005918_4006212_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQISQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>CP006834.2|AKK40139.1|4006208_4007132_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>CP006834.2|AKK41758.1|4007128_4007779_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDIFTIECRPFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQVEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>CP006834.2|AKK40140.1|4007760_4008507_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPDLLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDSFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>CP006834.2|AKK40141.1|4008517_4009573_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTLQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>CP006834.2|AKK40142.1|4009587_4010124_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIESQEWRFTALALVAAVAANVKAIDERQPFAAQLAAVMSEGRFTRLSAVKTPDELLRQLRRAVKLLNGSVNLISLADDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>CP006834.2|AKK40143.2|4010120_4011683_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVHLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLEAEKLREALLPLEHAFQFGPDSPSFMQDFEALTGDKVPVASLLPEIPGVQTTKFNKDHFIKRGVTEHLCPQCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKMWLNVMPQDEADLPLPKKFDGLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQNDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGVRGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>CP006834.2|AKK40144.1|4011780_4014438_-|CRISPR-associated-helicase/endonuclease-Cas3
MTFFYFWGKTRRGEKDGGEDYHLLCWHSLDVAAMGYLMVKSNCFGLAGYFRQLGFADTELAAQFFAWLLCWHDIGKFARSFQQLYLHPQLKVPEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLKRVMEMWMPMTTGHHGRPPERMDELDNFLPEDKGAARDFLLAIKVLFPLIEIPTFWDDDEGVELIKQLSWYISATVVLADWTGSSTRYFPRVAQAMDIEDYWQKTLVQAQNALTVFPPKAESAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGIEGQQEAPLLEKDDYPWLTHVTKSDVHSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIQVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDCSQRAGKVLICTQVLEQSVDCDLDEMISDLAPVDLLIQRAGRLQRHIRDINGLLKRDGKDERSPPELLILAPVWDDSLGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVAMPEGFARSEQEQVGKYYCDRAMAKKFVLNFKPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCIEQRQDPEMANVILVTDDESCGYSAMEGLTGKVG
>CP006834.2|AKK40145.1|4014675_4014828_-|type-I-toxin-antitoxin-system-hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>CP006834.2|AKK40146.1|4015091_4015826_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: CP006834_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP006834_4

4031524-4032041

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGACGTGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGNCGNGGGGAACTC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR
CGGTTTATCCCCGCTGACGTGGGGAACTCT	PILER-CR

8 spacers

The CRISPR arrays of CP006834_4

>merge|CP006834|4|4031524-4032041|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
TGGTTTATCCCCGCTGGTGCGGGGAACTCTGCGTGATCCCCTCGCTAACGTACATATCGATCGGTTTATCCCCGCTGGCGCGGGGAACTCGCAAAACCTGTCGATCTTGATACTGGTCGCTCCGGTTTATCCCCGCTGCCGCGGGGAACTCTTGCTGCAATTTTGTCTTTTAATTTATCCTAGCGGTTTATCCCCGCTGGCGCGGGGAACTCCGGACACCGTACACAGATTTATATCAATCATTCGGTTTATCCCCGCTGACGTGGGGAACTCTTCGACCGTCTCGACTTTTGACGAGTGACCAACGGTTTATCCCCGCTGACGTGGGGAACTCTCTTTCGCAGCATCTGGAACTAAATTAATTGCCGGTTTATCCCCGCTGACGTGGGGAACTCTGTTTGTGCCGGAGATTTCGGACCAAAATCAACGGTTTATCCCCGCTGACGTGGGGAACTCGTCGATAATATTTTGCTGTTGTTTTGTTACGTCGGTTTATCCCCGCTGACGTGGGGAACTCT

>CP006834|4|4|4031524-4032040|CRISPRCasFinder
TGGTTTATCCCCGCTGGTGCGGGGAACTC	TGCGTGATCCCCTCGCTAACGTACATATCGAT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCAAAACCTGTCGATCTTGATACTGGTCGCTC
CGGTTTATCCCCGCTGCCGCGGGGAACTC	TTGCTGCAATTTTGTCTTTTAATTTATCCTAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CGGACACCGTACACAGATTTATATCAATCATT
CGGTTTATCCCCGCTGACGTGGGGAACTC	TTCGACCGTCTCGACTTTTGACGAGTGACCAA
CGGTTTATCCCCGCTGACGTGGGGAACTC	TCTTTCGCAGCATCTGGAACTAAATTAATTGC
CGGTTTATCCCCGCTGACGTGGGGAACTC	TGTTTGTGCCGGAGATTTCGGACCAAAATCAA
CGGTTTATCCCCGCTGACGTGGGGAACTC	GTCGATAATATTTTGCTGTTGTTTTGTTACGT
CGGTTTATCCCCGCTGACGTGGGGAACTC

>CP006834|4|2|4031524-4032040|CRT
TGGTTTATCCCCGCTGGTGCGGGGAACTC	TGCGTGATCCCCTCGCTAACGTACATATCGAT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCAAAACCTGTCGATCTTGATACTGGTCGCTC
CGGTTTATCCCCGCTGCCGCGGGGAACTC	TTGCTGCAATTTTGTCTTTTAATTTATCCTAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CGGACACCGTACACAGATTTATATCAATCATT
CGGTTTATCCCCGCTGACGTGGGGAACTC	TTCGACCGTCTCGACTTTTGACGAGTGACCAA
CGGTTTATCCCCGCTGACGTGGGGAACTC	TCTTTCGCAGCATCTGGAACTAAATTAATTGC
CGGTTTATCCCCGCTGACGTGGGGAACTC	TGTTTGTGCCGGAGATTTCGGACCAAAATCAA
CGGTTTATCCCCGCTGACGTGGGGAACTC	GTCGATAATATTTTGCTGTTGTTTTGTTACGT
CGGTTTATCCCCGCTGACGTGGGGAACTC

>CP006834|4|2|4031525-4031735|PILER-CR
GGTTTATCCCCGCTGGTGCGGGGAACTCT	GCGTGATCCCCTCGCTAACGTACATATCGATC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	CAAAACCTGTCGATCTTGATACTGGTCGCTCC
GGTTTATCCCCGCTGCCGCGGGGAACTCT	TGCTGCAATTTTGTCTTTTAATTTATCCTAGC
GGTTTATCCCCGCTGGCGCGGGGAACTCCGGACACCGTACACAGATTTATATCAATCATTCGGTTTATCCCCGCTGACGTGGGGAACTCT	TCGACCGTCTCGACTTTTGACGAGTGACCAA
CGGTTTATCCCCGCTGACGTGGGGAACTCT	CTTTCGCAGCATCTGGAACTAAATTAATTGC
CGGTTTATCCCCGCTGACGTGGGGAACTCT	GTTTGTGCCGGAGATTTCGGACCAAAATCAA
CGGTTTATCCCCGCTGACGTGGGGAACTCG	TCGATAATATTTTGCTGTTGTTTTGTTACGT


>CP006834|4|3|4031768-4032041|PILER-CR
	GCGTGATCCCCTCGCTAACGTACATATCGATC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	CAAAACCTGTCGATCTTGATACTGGTCGCTCC
GGTTTATCCCCGCTGCCGCGGGGAACTCT	TGCTGCAATTTTGTCTTTTAATTTATCCTAGC
GGTTTATCCCCGCTGGCGCGGGGAACTCCGGACACCGTACACAGATTTATATCAATCATTCGGTTTATCCCCGCTGACGTGGGGAACTCT	TCGACCGTCTCGACTTTTGACGAGTGACCAA
CGGTTTATCCCCGCTGACGTGGGGAACTCT	CTTTCGCAGCATCTGGAACTAAATTAATTGC
CGGTTTATCCCCGCTGACGTGGGGAACTCT	GTTTGTGCCGGAGATTTCGGACCAAAATCAA
CGGTTTATCCCCGCTGACGTGGGGAACTCG	TCGATAATATTTTGCTGTTGTTTTGTTACGT
CGGTTTATCCCCGCTGACGTGGGGAACTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP006834.2\|AKK40172.1\|4047741_4049082_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
CP006834.2\|AKK40168.1\|4040994_4042203_+\|IS4-like-element-ISVsa5-family-transposase	unknown	unknown	gnl\|CDD\|376573
CP006834.2\|AKK40152.1\|4021708_4022284_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
CP006834.2\|AKK40150.2\|4020169_4021441_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
CP006834.2\|AKK40160.1\|4032379_4033051_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP006834.2\|AKK40157.1\|4026999_4027785_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
CP006834.2\|AKK40170.1\|4043393_4046150_+\|signal-transduction-histidine-kinase	unknown	unknown	gnl\|CDD\|236848
CP006834.2\|AKK40153.1\|4022430_4023291_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
CP006834.2\|AKK40159.1\|4029407_4030886_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
CP006834.2\|AKK40171.1\|4046380_4047721_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
CP006834.2\|AKK40173.1\|4049083_4050436_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
CP006834.2\|AKK40165.1\|4037528_4038320_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP006834.2\|AKK40151.1\|4021431_4021692_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
CP006834.2\|AKK40166.1\|4038415_4040650_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
CP006834.2\|AKK40158.1\|4028103_4029381_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
CP006834.2\|AKK40154.1\|4023287_4024067_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
CP006834.2\|AKK40155.1\|4024044_4025382_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
CP006834.2\|AKK40163.1\|4034278_4035577_-\|enolase	unknown	unknown	gnl\|CDD\|234617
CP006834.2\|AKK40156.1\|4025475_4026930_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
CP006834.2\|AKK40164.1\|4035663_4037301_-\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437

Protein	Function_ID	Function_description	E-value
CP006834.2\|AKK40172.1\|4047741_4049082_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
CP006834.2\|AKK40168.1\|4040994_4042203_+\|IS4-like-element-ISVsa5-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	6.93796e-11
CP006834.2\|AKK40152.1\|4021708_4022284_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.96043e-88
CP006834.2\|AKK40150.2\|4020169_4021441_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	6.1619e-125
CP006834.2\|AKK40160.1\|4032379_4033051_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
CP006834.2\|AKK40157.1\|4026999_4027785_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.9939e-139
CP006834.2\|AKK40170.1\|4043393_4046150_+\|signal-transduction-histidine-kinase	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP006834.2\|AKK40153.1\|4022430_4023291_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	7.31174e-87
CP006834.2\|AKK40159.1\|4029407_4030886_+\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	2.96639e-109
CP006834.2\|AKK40171.1\|4046380_4047721_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
CP006834.2\|AKK40173.1\|4049083_4050436_-\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	6.41821e-161
CP006834.2\|AKK40165.1\|4037528_4038320_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	6.42418e-159
CP006834.2\|AKK40151.1\|4021431_4021692_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	4.39108e-42
CP006834.2\|AKK40166.1\|4038415_4040650_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP006834.2\|AKK40158.1\|4028103_4029381_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	7.00463e-29
CP006834.2\|AKK40154.1\|4023287_4024067_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.49488e-64
CP006834.2\|AKK40155.1\|4024044_4025382_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.78259e-51
CP006834.2\|AKK40163.1\|4034278_4035577_-\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP006834.2\|AKK40156.1\|4025475_4026930_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.16286e-81
CP006834.2\|AKK40164.1\|4035663_4037301_-\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0

>CP006834.2|AKK40159.1|4029407_4030886_+|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFASHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDTAVMEKFNIPRQMLFDVQMPGTVLGHITRQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>CP006834.2|AKK40158.1|4028103_4029381_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSTNNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGYWQDTLPAAEAYRNMWLMGMAALAMVIIFTFLLFQKIRTADSAPAMASSK
>CP006834.2|AKK40157.1|4026999_4027785_-|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASQASNYVNGHLLVVDGGYLVR
>CP006834.2|AKK40156.1|4025475_4026930_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYVLEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>CP006834.2|AKK40155.1|4024044_4025382_-|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFIGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGVLLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>CP006834.2|AKK40154.1|4023287_4024067_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTSMSLTALSMGDERALHWLRYLMALGFEEAVVLETAADLRFASEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAELPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQNYLRQRMQP
>CP006834.2|AKK40153.1|4022430_4023291_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNITIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSMRKSHWGNALTATLQTEKRPLCLSLARQVGALKNATLPSGMQQQNIVPGAPPDWLISVENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLVEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKAVLEALVTTIHADCQ
>CP006834.2|AKK40152.1|4021708_4022284_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISQIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>CP006834.2|AKK40151.1|4021431_4021692_+|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQRLINACPAGLFSLTPEGDLRVDYRGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>CP006834.2|AKK40150.2|4020169_4021441_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLVERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQSAGNGWLLLGDALRSCVNTGISVRGMDMALTGTQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL
>CP006834.2|AKK40160.1|4032379_4033051_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>CP006834.2|AKK40163.1|4034278_4035577_-|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP006834.2|AKK40164.1|4035663_4037301_-|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>CP006834.2|AKK40165.1|4037528_4038320_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADGSAGNSREVLARWEQIKTEERAQKAQHSALDDIPSSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQVVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>CP006834.2|AKK40166.1|4038415_4040650_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>CP006834.2|AKK40168.1|4040994_4042203_+|IS4-like-element-ISVsa5-family-transposase
MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNLFTHGYVLGKL
>CP006834.2|AKK40170.1|4043393_4046150_+|signal-transduction-histidine-kinase
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>CP006834.2|AKK40171.1|4046380_4047721_-|glucarate-dehydratase
MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDKCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPLEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR
>CP006834.2|AKK40172.1|4047741_4049082_-|glucarate-dehydratase
MTTQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTDNAGHTGIGEAPGGEVIYQTLVKAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALLDLLGQALNVPVCELLGPGKQRDAITVLGYLFYIGDRTKTDLPYLENTSGNHEWYQLRHQKAMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWLLDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAEFRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGNPTAIDTHWIWQEGDCRLTKNPLEIKNGKIAVPDAPGLGVELDWEQVQKAHEAYKRLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH
>CP006834.2|AKK40173.1|4049083_4050436_-|MFS-transporter
MSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSMFTLLQGFVDIFSGFGIIVALFTLRFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVSIFNSAQYFATVIFAPIMGWLTHEVGWSHVFFFMGGLGIVISFIWLKVIHEPNQHPGVNQKELEYIAAGGALINMDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKTPIVMGMLLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALIAVLSYLVLVGDIKRIELKPVAGQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_CP038506	Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence	11835-11866	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_CP019283	Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence	42147-42178	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	CP042641	Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence	36520-36551	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_CP034821	Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence	1557-1588	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_CP027443	Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence	9506-9537	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_CP027575	Escherichia coli strain 2013C-4081 plasmid unnamed2	94756-94787	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_CP027223	Escherichia coli strain 2015C-3101 plasmid unnamed2	65534-65565	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_CP030188	Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence	61916-61947	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_CP027590	Escherichia coli strain 2014C-3011 plasmid unnamed2	64165-64196	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_CP039862	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence	20286-20317	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_CP033632	Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence	119284-119315	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_AP018798	Escherichia coli strain E2855 plasmid pE2855-2, complete sequence	85099-85130	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	CP012494	Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence	46688-46719	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	CP027320	Escherichia coli strain 2014C-3084 plasmid unnamed1	42116-42147	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NC_013370	Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence	87237-87268	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_CP026475	Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence	81853-81884	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	MN510445	Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence	70500-70531	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	MN510447	Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence	47861-47892	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_CP012491	Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence	62997-63028	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	MH422554	Escherichia phage P1, complete genome	87194-87225	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NC_050152	Enterobacteria phage P7, complete genome	93995-94026	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	MH445380	Escherichia virus P1 isolate transconjugant 2(L-II), complete genome	58645-58676	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NC_031129	Salmonella phage SJ46, complete genome	77363-77394	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	MH445381	Escherichia virus P1, complete genome	56870-56901	0	1.0
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	17440-17471	2	0.938
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_CP017632	Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence	122310-122341	2	0.938
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_CP030285	Escherichia coli strain E308 plasmid pLKSZ04, complete sequence	6029-6060	2	0.938
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	NZ_CP036204	Escherichia coli strain L725 plasmid punnamed2, complete sequence	15121-15152	2	0.938
CP006834_3	3.1\|4004786\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004786-4004817	32	MN510446	Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence	131402-131433	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NZ_CP032392	Salmonella enterica subsp. enterica serovar Dublin strain CVM 34981 plasmid p34981_2, complete sequence	28190-28221	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NZ_CP022965	Salmonella enterica subsp. enterica serovar Pullorum strain QJ-2D-Sal plasmid pQJDsal2, complete sequence	29440-29471	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NC_007208	Salmonella enterica OU7025 plasmid pOU1113, complete sequence	19749-19780	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NZ_HG970001	Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 plasmid pSG, complete sequence	38393-38424	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NZ_CP032386	Salmonella enterica subsp. enterica serovar Dublin strain CVM N53043 plasmid pN53043_2, complete sequence	3653-3684	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NZ_CP032388	Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 plasmid pN45955_1, complete sequence	42554-42585	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NZ_CP030208	Salmonella enterica strain SA19992307 plasmid pSA19992307.1, complete sequence	4890-4921	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NZ_CP032450	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 plasmid pSDU1-USMARC-69838, complete sequence	68762-68793	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NC_011204	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74, complete sequence	31020-31051	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NC_019106	Salmonella enterica subsp. enterica serovar Dublin plasmid pSD_77, complete sequence	75580-75611	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NC_019112	Salmonella enterica subsp. enterica serovar Pullorum plasmid pSPUV, complete sequence	20322-20353	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NZ_CP012348	Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120 plasmid pCFSAN000725_01, complete sequence	42630-42661	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NZ_CP019180	Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 plasmid pATCC39184, complete sequence	59477-59508	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NZ_CP032394	Salmonella enterica subsp. enterica serovar Dublin strain CVM 22453 plasmid p22453_2, complete sequence	17037-17068	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NC_010422	Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1115, complete sequence	19784-19815	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NZ_CP032381	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 plasmid pSDU2-USMARC-69807, complete sequence	47366-47397	2	0.938
CP006834_3	3.4\|4004969\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004969-4005000	32	NZ_CP032447	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69840 plasmid pSDU1-USMARC-69840, complete sequence	58031-58062	2	0.938
CP006834_3	3.6\|4005091\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005091-4005122	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	213346-213377	6	0.812
CP006834_3	3.17\|4005762\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005762-4005793	32	NZ_CP022140	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence	27735-27766	6	0.812
CP006834_3	3.11\|4005396\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005396-4005427	32	NZ_CP015205	Rhodococcus sp. 008 plasmid pR8C2, complete sequence	47221-47252	7	0.781
CP006834_3	3.11\|4005396\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005396-4005427	32	NZ_CP025960	Rhodococcus qingshengii strain djl-6-2 plasmid pDJL1, complete sequence	25136-25167	7	0.781
CP006834_4	4.13\|4031859\|31\|CP006834\|PILER-CR	4031859-4031889	31	MN693193	Marine virus AFVG_25M440, complete genome	51417-51447	7	0.774
CP006834_4	4.15\|4031981\|31\|CP006834\|PILER-CR	4031981-4032011	31	MK448716	Streptococcus phage Javan249, complete genome	37558-37588	7	0.774
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12111-12158	8	0.833
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	424237-424284	8	0.833
CP006834_3	3.3\|4004908\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4004908-4004939	32	NZ_CP042263	Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence	173595-173626	8	0.75
CP006834_3	3.6\|4005091\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005091-4005122	32	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	495160-495191	8	0.75
CP006834_3	3.6\|4005091\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005091-4005122	32	NZ_CP041042	Paracoccus sp. AK26 plasmid pAK4, complete sequence	80163-80194	8	0.75
CP006834_3	3.6\|4005091\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005091-4005122	32	NZ_CP035513	Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence	265218-265249	8	0.75
CP006834_3	3.6\|4005091\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005091-4005122	32	NZ_CP021819	Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence	503132-503163	8	0.75
CP006834_3	3.17\|4005762\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005762-4005793	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	70246-70277	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_LT904880	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 3	100861-100892	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_LT904895	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2	32455-32486	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP012254	Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence	90639-90670	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029647	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM2, complete sequence	24048-24079	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_LT904853	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2	2158-2189	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NC_003385	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence	69550-69581	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029859	Salmonella enterica subsp. enterica serovar Typhi strain 343077_285138 plasmid pHCM2, complete sequence	33422-33453	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029847	Salmonella enterica subsp. enterica serovar Typhi strain 343078_273110 plasmid pHCM2, complete sequence	64890-64921	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029916	Salmonella enterica subsp. enterica serovar Typhi strain 343076_202113 plasmid pHCM2, complete sequence	3001-3032	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029893	Salmonella enterica subsp. enterica serovar Typhi strain 343076_252143 plasmid pHCM2, complete sequence	30210-30241	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029876	Salmonella enterica subsp. enterica serovar Typhi strain 343076_227128 plasmid pHCM2, complete sequence	21803-21834	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029884	Salmonella enterica subsp. enterica serovar Typhi strain 311189_268186 plasmid pHCM2, complete sequence	5429-5460	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029961	Salmonella enterica subsp. enterica serovar Typhi strain 343078_251131 plasmid pHCM2, complete sequence	76887-76918	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029849	Salmonella enterica subsp. enterica serovar Typhi strain 343078_211126 plasmid pHCM2, complete sequence	9632-9663	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029857	Salmonella enterica subsp. enterica serovar Typhi strain 343077_286126 plasmid pHCM2, complete sequence	17697-17728	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029929	Salmonella enterica subsp. enterica serovar Typhi strain 311189_216103 plasmid pHCM2, complete sequence	73527-73558	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029865	Salmonella enterica subsp. enterica serovar Typhi strain 343077_228157 plasmid pHCM2, complete sequence	87633-87664	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_LT883154	Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2	32810-32841	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029905	Salmonella enterica subsp. enterica serovar Typhi strain 311189_231186 plasmid pHCM2, complete sequence	30728-30759	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029851	Salmonella enterica subsp. enterica serovar Typhi strain 343078_203125 plasmid pHCM2, complete sequence	44207-44238	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP040567	Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence	17468-17499	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029889	Salmonella enterica subsp. enterica serovar Typhi strain 343076_294172 plasmid pHCM2, complete sequence	17968-17999	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029891	Salmonella enterica subsp. enterica serovar Typhi strain 343076_253155 plasmid pHCM2, complete sequence	18575-18606	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029898	Salmonella enterica subsp. enterica serovar Typhi strain 343077_213147 plasmid pHCM2, complete sequence	21136-21167	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029951	Salmonella enterica subsp. enterica serovar Typhi strain 311189_205186 plasmid pHCM2, complete sequence	47286-47317	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029867	Salmonella enterica subsp. enterica serovar Typhi strain 343077_228140 plasmid pHCM2, complete sequence	33258-33289	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029901	Salmonella enterica subsp. enterica serovar Typhi strain 343076_232188 plasmid pHCM2, complete sequence	32901-32932	8	0.75
CP006834_4	4.4\|4031736\|32\|CP006834\|CRISPRCasFinder,CRT	4031736-4031767	32	NZ_CP029921	Salmonella enterica subsp. enterica serovar Typhi strain 311189_282186 plasmid pHCM2, complete sequence	100446-100477	8	0.75
CP006834_4	4.8\|4031980\|32\|CP006834\|CRISPRCasFinder,CRT	4031980-4032011	32	MK448716	Streptococcus phage Javan249, complete genome	37558-37589	8	0.75
CP006834_4	4.15\|4031981\|31\|CP006834\|PILER-CR	4031981-4032011	31	NZ_CP044347	Escherichia coli strain P225M plasmid pP225M-CTX-M-55, complete sequence	121862-121892	8	0.742
CP006834_4	4.15\|4031981\|31\|CP006834\|PILER-CR	4031981-4032011	31	NZ_CP032533	Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence	17401-17431	8	0.742
CP006834_3	3.6\|4005091\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005091-4005122	32	NC_019846	Sinorhizobium meliloti GR4 plasmid pRmeGR4a, complete sequence	170029-170060	9	0.719
CP006834_3	3.6\|4005091\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005091-4005122	32	NZ_CP021826	Sinorhizobium meliloti strain KH35c plasmid accessoryA, complete sequence	70339-70370	9	0.719
CP006834_3	3.6\|4005091\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005091-4005122	32	MG757153	Streptomyces phage BillNye, complete genome	85146-85177	9	0.719
CP006834_3	3.6\|4005091\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005091-4005122	32	MK620896	Streptomyces phage Circinus, complete genome	85114-85145	9	0.719
CP006834_3	3.17\|4005762\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005762-4005793	32	NZ_CP011404	Lactobacillus salivarius str. Ren plasmid pR1, complete sequence	100759-100790	9	0.719
CP006834_3	3.17\|4005762\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005762-4005793	32	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	48192-48223	9	0.719
CP006834_3	3.17\|4005762\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005762-4005793	32	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	248214-248245	9	0.719
CP006834_3	3.17\|4005762\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005762-4005793	32	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	140326-140357	9	0.719
CP006834_3	3.17\|4005762\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005762-4005793	32	NZ_CP017110	Lactobacillus salivarius strain CICC23174 plasmid pLS_3, complete sequence	20889-20920	9	0.719
CP006834_3	3.17\|4005762\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005762-4005793	32	NZ_CP029460	Clostridium novyi strain 150557 plasmid pCN2, complete sequence	45232-45263	9	0.719
CP006834_4	4.2\|4031614\|32\|CP006834\|CRISPRCasFinder,CRT	4031614-4031645	32	NZ_CP021994	Cryobacterium sp. LW097 plasmid unnamed1	33387-33418	9	0.719
CP006834_4	4.3\|4031675\|32\|CP006834\|CRISPRCasFinder,CRT	4031675-4031706	32	AP014399	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, * SEQUENCING IN PROGRESS *, 2 ordered pieces	35411-35442	9	0.719
CP006834_4	4.3\|4031675\|32\|CP006834\|CRISPRCasFinder,CRT	4031675-4031706	32	AP013383	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13	29583-29614	9	0.719
CP006834_4	4.8\|4031980\|32\|CP006834\|CRISPRCasFinder,CRT	4031980-4032011	32	NZ_CP044347	Escherichia coli strain P225M plasmid pP225M-CTX-M-55, complete sequence	121862-121893	9	0.719
CP006834_4	4.8\|4031980\|32\|CP006834\|CRISPRCasFinder,CRT	4031980-4032011	32	NZ_CP032533	Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence	17401-17432	9	0.719
CP006834_4	4.10\|4031615\|32\|CP006834\|PILER-CR	4031615-4031646	32	NZ_CP021994	Cryobacterium sp. LW097 plasmid unnamed1	33387-33418	9	0.719
CP006834_4	4.11\|4031676\|32\|CP006834\|PILER-CR	4031676-4031707	32	AP014399	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, * SEQUENCING IN PROGRESS *, 2 ordered pieces	35411-35442	9	0.719
CP006834_4	4.11\|4031676\|32\|CP006834\|PILER-CR	4031676-4031707	32	AP013383	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13	29583-29614	9	0.719
CP006834_4	4.15\|4031981\|31\|CP006834\|PILER-CR	4031981-4032011	31	NZ_CP045561	Acinetobacter nosocomialis strain AC1530 plasmid pAC1530, complete sequence	141094-141124	9	0.71
CP006834_4	4.15\|4031981\|31\|CP006834\|PILER-CR	4031981-4032011	31	NZ_CP014478	Acinetobacter pittii strain AP_882 plasmid pNDM-AP_882, complete sequence	140150-140180	9	0.71
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7391-7438	10	0.792
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84215-84262	10	0.792
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87125-87172	10	0.792
CP006834_3	3.10\|4005335\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005335-4005366	32	NZ_CP031468	Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence	166221-166252	10	0.688
CP006834_3	3.10\|4005335\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005335-4005366	32	NZ_CP014580	Burkholderia sp. OLGA172 plasmid pOLGA1, complete sequence	2849-2880	10	0.688
CP006834_3	3.17\|4005762\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005762-4005793	32	NC_018511	Bacillus thuringiensis HD-789 plasmid pBTHD789-5, complete sequence	60-91	10	0.688
CP006834_3	3.17\|4005762\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005762-4005793	32	NC_001446	Bacillus thuringiensis sv israelensis HI4 plasmid pTX14-3, complete sequence	4548-4579	10	0.688
CP006834_3	3.17\|4005762\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005762-4005793	32	NZ_CP009345	Bacillus thuringiensis HD1002 plasmid 6, complete sequence	1165-1196	10	0.688
CP006834_3	3.17\|4005762\|32\|CP006834\|PILER-CR,CRISPRCasFinder,CRT	4005762-4005793	32	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	105460-105491	10	0.688
CP006834_4	4.1\|4031553\|32\|CP006834\|CRISPRCasFinder,CRT	4031553-4031584	32	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	1163456-1163487	10	0.688
CP006834_4	4.8\|4031980\|32\|CP006834\|CRISPRCasFinder,CRT	4031980-4032011	32	NZ_CP045561	Acinetobacter nosocomialis strain AC1530 plasmid pAC1530, complete sequence	141094-141125	10	0.688
CP006834_4	4.8\|4031980\|32\|CP006834\|CRISPRCasFinder,CRT	4031980-4032011	32	NZ_CP014478	Acinetobacter pittii strain AP_882 plasmid pNDM-AP_882, complete sequence	140150-140181	10	0.688
CP006834_4	4.9\|4031554\|32\|CP006834\|PILER-CR	4031554-4031585	32	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	1163456-1163487	10	0.688
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229237-229284	11	0.771
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229338-229385	11	0.771
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229439-229486	11	0.771
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239731-239778	11	0.771
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239832-239879	11	0.771
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239933-239980	11	0.771
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15006-15053	11	0.771
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230643-230690	11	0.771
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230744-230791	11	0.771
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230845-230892	11	0.771
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211613-211660	11	0.771
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211714-211761	11	0.771
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211815-211862	11	0.771
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31250-31297	11	0.771
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3371-3418	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4012-4059	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4113-4160	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208980-209027	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3370-3417	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4011-4058	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4112-4159	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219474-219521	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3370-3417	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4011-4058	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4112-4159	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210308-210355	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3370-3417	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4011-4058	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4112-4159	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191263-191310	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	270-317	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	101195-101242	12	0.75
CP006834_1	1.1\|1763654\|48\|CP006834\|CRISPRCasFinder	1763654-1763701	48	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	158-205	13	0.729

1. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038506 (Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

2. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

3. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to CP042641 (Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

4. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

5. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027443 (Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

6. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027575 (Escherichia coli strain 2013C-4081 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

7. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027223 (Escherichia coli strain 2015C-3101 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

8. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

9. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027590 (Escherichia coli strain 2014C-3011 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

10. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

11. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

12. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

13. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to CP012494 (Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

14. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to CP027320 (Escherichia coli strain 2014C-3084 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

15. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NC_013370 (Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

16. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026475 (Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

17. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to MN510445 (Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

18. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to MN510447 (Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

19. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012491 (Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

20. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to MH422554 (Escherichia phage P1, complete genome) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

21. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NC_050152 (Enterobacteria phage P7, complete genome) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

22. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to MH445380 (Escherichia virus P1 isolate transconjugant 2(L-II), complete genome) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

23. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

24. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to MH445381 (Escherichia virus P1, complete genome) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

25. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 2, identity: 0.938

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaacgtgttttcacc	Protospacer
******************* ********.***

26. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017632 (Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence) position: , mismatch: 2, identity: 0.938

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaacgtgttttcacc	Protospacer
******************* ********.***

27. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030285 (Escherichia coli strain E308 plasmid pLKSZ04, complete sequence) position: , mismatch: 2, identity: 0.938

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgacggtttagaccgtgtttttacc	Protospacer
********* *****.****************

28. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036204 (Escherichia coli strain L725 plasmid punnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgacggtttagaccgtgtttttacc	Protospacer
********* *****.****************

29. spacer 3.1|4004786|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to MN510446 (Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence) position: , mismatch: 2, identity: 0.938

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcataacgtgtttttacc	Protospacer
***************** * ************

30. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032392 (Salmonella enterica subsp. enterica serovar Dublin strain CVM 34981 plasmid p34981_2, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

31. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022965 (Salmonella enterica subsp. enterica serovar Pullorum strain QJ-2D-Sal plasmid pQJDsal2, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

32. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NC_007208 (Salmonella enterica OU7025 plasmid pOU1113, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

33. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG970001 (Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 plasmid pSG, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

34. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032386 (Salmonella enterica subsp. enterica serovar Dublin strain CVM N53043 plasmid pN53043_2, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

35. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032388 (Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 plasmid pN45955_1, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

36. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030208 (Salmonella enterica strain SA19992307 plasmid pSA19992307.1, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

37. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032450 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 plasmid pSDU1-USMARC-69838, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

38. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NC_011204 (Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

39. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NC_019106 (Salmonella enterica subsp. enterica serovar Dublin plasmid pSD_77, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

40. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NC_019112 (Salmonella enterica subsp. enterica serovar Pullorum plasmid pSPUV, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

41. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012348 (Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120 plasmid pCFSAN000725_01, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

42. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019180 (Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 plasmid pATCC39184, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

43. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032394 (Salmonella enterica subsp. enterica serovar Dublin strain CVM 22453 plasmid p22453_2, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

44. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NC_010422 (Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1115, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

45. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032381 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 plasmid pSDU2-USMARC-69807, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

46. spacer 3.4|4004969|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032447 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69840 plasmid pSDU1-USMARC-69840, complete sequence) position: , mismatch: 2, identity: 0.938

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

47. spacer 3.6|4005091|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 6, identity: 0.812

-tgcctcggcggcggctctgcgcaaccgcgaaa	CRISPR spacer
atacct-ggcggcggctctgcgcgagcgcggca	Protospacer
 *.*** ****************.* ****. *

48. spacer 3.17|4005762|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022140 (Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

caaaaaataaaataaaggcaatgt-tttcaatg	CRISPR spacer
gaaaaaataaaatagagggaatgtgatttaat-	Protospacer
 *************.*** *****  **.***

49. spacer 3.11|4005396|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015205 (Rhodococcus sp. 008 plasmid pR8C2, complete sequence) position: , mismatch: 7, identity: 0.781

gcggaaacagcttcctggatgctgcgttattg	CRISPR spacer
gtggaaacagcttcttcgatgctgcgctcgcg	Protospacer
*.************.* *********.*  .*

50. spacer 3.11|4005396|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025960 (Rhodococcus qingshengii strain djl-6-2 plasmid pDJL1, complete sequence) position: , mismatch: 7, identity: 0.781

gcggaaacagcttcctggatgctgcgttattg	CRISPR spacer
gtggaaacagcttcttcgatgctgcgctcgcg	Protospacer
*.************.* *********.*  .*

51. spacer 4.13|4031859|31|CP006834|PILER-CR matches to MN693193 (Marine virus AFVG_25M440, complete genome) position: , mismatch: 7, identity: 0.774

ctttcgcagcatctggaactaaattaattgc	CRISPR spacer
cttgtccaccatctggtactaaattaattct	Protospacer
*** . ** ******* ************ .

52. spacer 4.15|4031981|31|CP006834|PILER-CR matches to MK448716 (Streptococcus phage Javan249, complete genome) position: , mismatch: 7, identity: 0.774

tcgataatattttgctgttgttttgttacgt	CRISPR spacer
actataatcttttgctgtcgttttgttatta	Protospacer
 * ***** *********.*********.

53. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 8, identity: 0.833

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccgaac	Protospacer
.* .********************* ****************   *.*

54. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.833

aaaccgtaggcctgataagacgcgcaagcgtcg-catcaggcaaacagc	CRISPR spacer
aacctgtaggcctgataagacgcgcaagcgtcgccatcaggcatctca-	Protospacer
** *.**************************** *********  . .

55. spacer 3.3|4004908|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042263 (Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

aacaggccgtatgaggatcactggcacggcgg	CRISPR spacer
cacaggctgtatgacgatcactggctgcaccg	Protospacer
 ******.****** **********   .* *

56. spacer 3.6|4005091|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75

tgcctcggcggcggctctgcgcaaccgcgaaa	CRISPR spacer
cgcctcggcggcgggtccgcgcaactcggcca	Protospacer
.************* **.*******.  *  *

57. spacer 3.6|4005091|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041042 (Paracoccus sp. AK26 plasmid pAK4, complete sequence) position: , mismatch: 8, identity: 0.75

tgcctcggcggcggctctgcgcaaccgcgaaa	CRISPR spacer
ggcggcggcggcggcgctgcgcgaccgcgcgc	Protospacer
 **  ********** ******.****** .

58. spacer 3.6|4005091|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035513 (Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence) position: , mismatch: 8, identity: 0.75

tgcctcggcggcggctctgcgcaaccgcgaaa	CRISPR spacer
tgcctcggcggcggctccgcccagctctgcat	Protospacer
*****************.** **.*. .* *

59. spacer 3.6|4005091|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021819 (Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

tgcctcggcggcggctctgcgcaa-----ccgcgaaa	CRISPR spacer
cgccacggcggcagctctgcgcaagtcagccg-----	Protospacer
.*** *******.***********     ***

60. spacer 3.17|4005762|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 8, identity: 0.75

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
taaaaaattaaataaagccaatgttttagcga	Protospacer
.******* ******** ********* .  .

61. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_LT904880 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 3) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

62. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_LT904895 (Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

63. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP012254 (Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
tgataacgctacacagacttataacaatcatt	Protospacer
.*.  **  ********.***** ********

64. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029647 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

65. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_LT904853 (Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

66. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NC_003385 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

67. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029859 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_285138 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

68. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029847 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_273110 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

69. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029916 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_202113 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

70. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029893 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_252143 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

71. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029876 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_227128 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

72. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029884 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_268186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

73. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029961 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_251131 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

74. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029849 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_211126 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

75. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029857 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_286126 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

76. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029929 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_216103 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

77. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029865 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_228157 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

78. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_LT883154 (Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

79. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029905 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_231186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

80. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029851 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_203125 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

81. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP040567 (Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

82. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029889 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_294172 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

83. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029891 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_253155 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

84. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029898 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_213147 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

85. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029951 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_205186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

86. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029867 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_228140 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

87. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029901 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_232188 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

88. spacer 4.4|4031736|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP029921 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_282186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

89. spacer 4.8|4031980|32|CP006834|CRISPRCasFinder,CRT matches to MK448716 (Streptococcus phage Javan249, complete genome) position: , mismatch: 8, identity: 0.75

gtcgataatattttgctgttgttttgttacgt	CRISPR spacer
aactataatcttttgctgtcgttttgttatta	Protospacer
. * ***** *********.*********.

90. spacer 4.15|4031981|31|CP006834|PILER-CR matches to NZ_CP044347 (Escherichia coli strain P225M plasmid pP225M-CTX-M-55, complete sequence) position: , mismatch: 8, identity: 0.742

tcgataatattttgctgttgttttgttacgt	CRISPR spacer
tgcataatatttcgctcttgttttgttctta	Protospacer
*  *********.*** ********** .

91. spacer 4.15|4031981|31|CP006834|PILER-CR matches to NZ_CP032533 (Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence) position: , mismatch: 8, identity: 0.742

tcgataatattttgctgttgttttgttacgt	CRISPR spacer
ctcaccatattttactgtttttttgttacat	Protospacer
.. *. *******.***** *********.*

92. spacer 3.6|4005091|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NC_019846 (Sinorhizobium meliloti GR4 plasmid pRmeGR4a, complete sequence) position: , mismatch: 9, identity: 0.719

tgcctcggcggcggctctgcgcaaccgcgaaa	CRISPR spacer
tgcctcggcgggggctatgcgcaccgggcccg	Protospacer
*********** **** ****** * *    .

93. spacer 3.6|4005091|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021826 (Sinorhizobium meliloti strain KH35c plasmid accessoryA, complete sequence) position: , mismatch: 9, identity: 0.719

tgcctcggcggcggctctgcgcaaccgcgaaa	CRISPR spacer
tgcctcggcgggggctatgcgcaccgggcccg	Protospacer
*********** **** ****** * *    .

94. spacer 3.6|4005091|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to MG757153 (Streptomyces phage BillNye, complete genome) position: , mismatch: 9, identity: 0.719

tgcctcggcggcggctctgcgcaaccgcgaaa----	CRISPR spacer
tgactcggcggcggctatgcgca----cagagttgc	Protospacer
** ************* ******    *..*.

95. spacer 3.6|4005091|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to MK620896 (Streptomyces phage Circinus, complete genome) position: , mismatch: 9, identity: 0.719

tgcctcggcggcggctctgcgcaaccgcgaaa----	CRISPR spacer
tgactcggcggcggctatgcgca----cagagttgc	Protospacer
** ************* ******    *..*.

96. spacer 3.17|4005762|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011404 (Lactobacillus salivarius str. Ren plasmid pR1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaataataaaattaaggcaatgtttattaaa	Protospacer
. ** ******** ************ . * .

97. spacer 3.17|4005762|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaataataaaattaaggcaatgtttattaaa	Protospacer
. ** ******** ************ . * .

98. spacer 3.17|4005762|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaataataaaattaaggcaatgtttattaaa	Protospacer
. ** ******** ************ . * .

99. spacer 3.17|4005762|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.719

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaataataaaattaaggcaatgtttattaaa	Protospacer
. ** ******** ************ . * .

100. spacer 3.17|4005762|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017110 (Lactobacillus salivarius strain CICC23174 plasmid pLS_3, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaataataaaattaaggcaatgtttattaaa	Protospacer
. ** ******** ************ . * .

101. spacer 3.17|4005762|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029460 (Clostridium novyi strain 150557 plasmid pCN2, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaaaaataaaataaatacaatgttctttttt	Protospacer
. ************** .*******.*.  *

102. spacer 4.2|4031614|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP021994 (Cryobacterium sp. LW097 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

gcaaaacctgtcgatcttgatactggtcgctc	CRISPR spacer
tgaggtctggtcgatcttgctgctggtcgctc	Protospacer
  *.. *. ********** *.**********

103. spacer 4.3|4031675|32|CP006834|CRISPRCasFinder,CRT matches to AP014399 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 9, identity: 0.719

ttgctgcaattttgtcttttaatttatcctag	CRISPR spacer
aatttgcaattatctcttttaatttatctgac	Protospacer
   .******* * **************. *

104. spacer 4.3|4031675|32|CP006834|CRISPRCasFinder,CRT matches to AP013383 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13) position: , mismatch: 9, identity: 0.719

ttgctgcaattttgtcttttaatttatcctag	CRISPR spacer
aatttgcaattatctcttttaatttatctgac	Protospacer
   .******* * **************. *

105. spacer 4.8|4031980|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP044347 (Escherichia coli strain P225M plasmid pP225M-CTX-M-55, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgataatattttgctgttgttttgttacgt	CRISPR spacer
atgcataatatttcgctcttgttttgttctta	Protospacer
.*  *********.*** ********** .

106. spacer 4.8|4031980|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP032533 (Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgataatattttgctgttgttttgttacgt	CRISPR spacer
tctcaccatattttactgtttttttgttacat	Protospacer
 .. *. *******.***** *********.*

107. spacer 4.10|4031615|32|CP006834|PILER-CR matches to NZ_CP021994 (Cryobacterium sp. LW097 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

gcaaaacctgtcgatcttgatactggtcgctc	CRISPR spacer
tgaggtctggtcgatcttgctgctggtcgctc	Protospacer
  *.. *. ********** *.**********

108. spacer 4.11|4031676|32|CP006834|PILER-CR matches to AP014399 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 9, identity: 0.719

ttgctgcaattttgtcttttaatttatcctag	CRISPR spacer
aatttgcaattatctcttttaatttatctgac	Protospacer
   .******* * **************. *

109. spacer 4.11|4031676|32|CP006834|PILER-CR matches to AP013383 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13) position: , mismatch: 9, identity: 0.719

ttgctgcaattttgtcttttaatttatcctag	CRISPR spacer
aatttgcaattatctcttttaatttatctgac	Protospacer
   .******* * **************. *

110. spacer 4.15|4031981|31|CP006834|PILER-CR matches to NZ_CP045561 (Acinetobacter nosocomialis strain AC1530 plasmid pAC1530, complete sequence) position: , mismatch: 9, identity: 0.71

tcgataatattttgctgttgttttgttacgt	CRISPR spacer
ttttcaaaattttgctgttgtttttttatta	Protospacer
*.  .** **************** ***.

111. spacer 4.15|4031981|31|CP006834|PILER-CR matches to NZ_CP014478 (Acinetobacter pittii strain AP_882 plasmid pNDM-AP_882, complete sequence) position: , mismatch: 9, identity: 0.71

tcgataatattttgctgttgttttgttacgt	CRISPR spacer
ttttcaaaattttgctgttgtttttttatta	Protospacer
*.  .** **************** ***.

112. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

113. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

114. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
attttgtaggcctgataagacgcggcagcgtcgcatcaggcatcgtgc	Protospacer
*  ..*******************  ****************    **

115. spacer 3.10|4005335|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031468 (Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

agtgagtatttcgcggacctcttcaccgatcg	CRISPR spacer
atctccgatttcgcggacgtcgtcaccgatta	Protospacer
* .    *********** ** ********..

116. spacer 3.10|4005335|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014580 (Burkholderia sp. OLGA172 plasmid pOLGA1, complete sequence) position: , mismatch: 10, identity: 0.688

agtgagtatttcgcggacctcttcaccgatcg	CRISPR spacer
atctccgatttcgcggacgtcgtcaccgatta	Protospacer
* .    *********** ** ********..

117. spacer 3.17|4005762|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NC_018511 (Bacillus thuringiensis HD-789 plasmid pBTHD789-5, complete sequence) position: , mismatch: 10, identity: 0.688

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
aaaaaaataaaataaaagaaatgtaagaacga	Protospacer
 ***************.* *****    *  .

118. spacer 3.17|4005762|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NC_001446 (Bacillus thuringiensis sv israelensis HI4 plasmid pTX14-3, complete sequence) position: , mismatch: 10, identity: 0.688

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
aaaaaaataaaataaaagaaatgtaagaacga	Protospacer
 ***************.* *****    *  .

119. spacer 3.17|4005762|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009345 (Bacillus thuringiensis HD1002 plasmid 6, complete sequence) position: , mismatch: 10, identity: 0.688

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
aaaaaaataaaataaaagaaatgtaagaacga	Protospacer
 ***************.* *****    *  .

120. spacer 3.17|4005762|32|CP006834|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 10, identity: 0.688

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
atctaaataaaacaaaggaaatgttttaaggt	Protospacer
    ********.***** ******** *.

121. spacer 4.1|4031553|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 10, identity: 0.688

tgcgtgatcccctcgctaacgtacatatcgat	CRISPR spacer
aggtcagtcccgtcgctaacgtaaatatcgcc	Protospacer
 *  ...**** *********** ****** .

122. spacer 4.8|4031980|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP045561 (Acinetobacter nosocomialis strain AC1530 plasmid pAC1530, complete sequence) position: , mismatch: 10, identity: 0.688

gtcgataatattttgctgttgttttgttacgt	CRISPR spacer
attttcaaaattttgctgttgtttttttatta	Protospacer
.*.  .** **************** ***.

123. spacer 4.8|4031980|32|CP006834|CRISPRCasFinder,CRT matches to NZ_CP014478 (Acinetobacter pittii strain AP_882 plasmid pNDM-AP_882, complete sequence) position: , mismatch: 10, identity: 0.688

gtcgataatattttgctgttgttttgttacgt	CRISPR spacer
attttcaaaattttgctgttgtttttttatta	Protospacer
.*.  .** **************** ***.

124. spacer 4.9|4031554|32|CP006834|PILER-CR matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 10, identity: 0.688

tgcgtgatcccctcgctaacgtacatatcgat	CRISPR spacer
aggtcagtcccgtcgctaacgtaaatatcgcc	Protospacer
 *  ...**** *********** ****** .

125. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

126. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

127. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

128. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

129. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

130. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

131. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctggt	Protospacer
.. .******* ************* ****************  ..*.

132. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

133. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

134. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

135. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

136. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

137. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

138. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
cggctgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
 ..*.*******************  ****************   * .

139. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

140. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

141. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

142. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

143. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

144. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

145. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

146. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

147. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

148. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

149. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

150. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

151. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

152. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

153. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

154. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

155. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggtttgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
.. ..*******************  ****************   * .

156. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
taatacaaggcctgataagacgcgccagcgtcgcatcaggcgctgaat	Protospacer
 **.   ****************** ***************.   *..

157. spacer 1.1|1763654|48|CP006834|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaatt	Protospacer
.  . *******************. ***************    * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

642802 : 702679

uncultured_marine_virus(18.75%)

transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKK41689.1\|642802_644320_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	2.7e-87	38.0
AKK41690.1\|644556_646014_-	MFS transporter	A0A0P0IY73	Acinetobacter_phage	3.1e-48	29.6
AKK41691.1\|646072_648220_-	lysine decarboxylase CadA	NA	NA	NA	NA
AKK41692.1\|648299_649634_-	cadaverine/lysine antiporter	NA	NA	NA	NA
AXF91828.1\|649860_650109_+	hypothetical protein	NA	NA	NA	NA
AKK41693.1\|649999_651538_-	transcriptional regulator CadC	NA	NA	NA	NA
AXF91829.1\|651824_652043_+	hypothetical protein	NA	NA	NA	NA
AKK41694.1\|652341_653877_-	EAL domain-containing protein	NA	NA	NA	NA
AKK41695.1\|653947_654793_-	DUF4942 domain-containing protein	NA	NA	NA	NA
AKK41696.1\|654877_655075_-	DUF957 domain-containing protein	NA	NA	NA	NA
AKK41697.1\|655086_655575_-	hypothetical protein	NA	NA	NA	NA
AKK41698.1\|655571_655949_-	toxin	NA	NA	NA	NA
AKK41699.2\|655995_656373_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
AKK41700.1\|656451_656673_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	8.5e-11	45.8
AKK41701.2\|656741_657188_-	DNA repair protein RadC	NA	NA	NA	NA
AKK41702.1\|657232_657718_-	antirestriction protein	A9J566	Pseudomonas_phage	3.8e-11	30.2
AKK41703.1\|657808_658627_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	1.8e-45	38.2
AXF91830.1\|658716_658950_-	DUF905 domain-containing protein	NA	NA	NA	NA
AKK41798.2\|658955_659633_-	hypothetical protein	NA	NA	NA	NA
AXF91831.1\|659780_660461_-	WYL domain-containing protein	NA	NA	NA	NA
AKK41705.2\|660663_661548_-	GTPase	NA	NA	NA	NA
AKK41706.1\|661653_662616_+	hypothetical protein	NA	NA	NA	NA
AKK41707.1\|662612_663482_-	replication regulatory RepB family protein	NA	NA	NA	NA
AXF91832.1\|664157_664337_+	hypothetical protein	NA	NA	NA	NA
AKK41709.1\|665482_666214_+	inovirus Gp2 family protein	NA	NA	NA	NA
AXF91833.1\|666409_666655_-	hypothetical protein	NA	NA	NA	NA
AKK41710.1\|666723_667176_+	N-acetyltransferase	NA	NA	NA	NA
AXF91834.1\|667618_668892_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.1e-171	95.7
AKK41711.1\|669039_671088_+	TonB-dependent siderophore receptor IreA	A0A0P0I887	Acinetobacter_phage	1.1e-11	33.5
AXF91835.1\|673648_673840_+	hypothetical protein	A0A0N7BTS3	Escherichia_phage	2.4e-06	96.2
AXF91836.1\|674818_675358_+	inovirus Gp2 family protein	NA	NA	NA	NA
AXF91837.1\|675427_676636_+\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
AKK37138.2\|676980_677553_+	hypothetical protein	NA	NA	NA	NA
AKK37139.2\|677621_677858_+	AlpA family transcriptional regulator	NA	NA	NA	NA
AXF91838.1\|678123_678672_+	hypothetical protein	NA	NA	NA	NA
AXF91839.1\|679007_679199_-	osmoprotectant transport activator ProQ	NA	NA	NA	NA
AXF91840.1\|681081_681279_-	hypothetical protein	NA	NA	NA	NA
AKK37141.1\|682535_683351_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
AKK37142.1\|683437_683740_+	phosphoglucosamine mutase	NA	NA	NA	NA
AXF91841.1\|683633_683885_-	hypothetical protein	NA	NA	NA	NA
AXF91842.1\|684505_684784_-	pilus assembly protein	NA	NA	NA	NA
AXF91843.1\|684820_685012_+	papI protein	NA	NA	NA	NA
AXF91844.1\|685037_685220_+	hypothetical protein	NA	NA	NA	NA
AKK37144.1\|685206_685521_+	major pilus subunit operon regulatory protein PapB	NA	NA	NA	NA
AKK37145.1\|685706_686051_+	type 1 fimbrial protein	NA	NA	NA	NA
AKK37146.1\|686110_687319_+\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
AKK37148.1\|687757_688426_+	putative tetracyline resistance transcriptional regulator TetC	NA	NA	NA	NA
AKK37149.1\|688538_689744_-	tetracycline efflux MFS transporter Tet(B)	A0A2H4UVM2	Bodo_saltans_virus	3.0e-09	24.4
AKK37150.2\|689822_690449_+	TetR family transcriptional regulator	NA	NA	NA	NA
AKK37151.1\|690426_691113_-	ArsR family transcriptional regulator	NA	NA	NA	NA
AKK37152.2\|691120_691507_-	amino acid-binding protein	NA	NA	NA	NA
AXF91845.1\|691499_691820_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AKK37153.1\|692263_693469_+	sodium/glutamate symporter	NA	NA	NA	NA
AKK37154.2\|693834_695043_-\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
AKK37155.2\|696118_698650_+	PapC/FimD family outer membrane usher protein	NA	NA	NA	NA
AKK37156.1\|698681_700253_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
AKK37157.1\|700272_700620_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
AKK37158.2\|700619_701267_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.1e-21	46.0
AXF91846.1\|701334_702679_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.5e-75	51.3

DBSCAN-SWA_2

1808118 : 1863097

Enterobacteria_phage(53.03%)

head,tail,portal,lysis,terminase,integrase,capsid

attL 1822113:1822128|attR 1835293:1835308

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKK38104.1\|1808118_1809189_-\|integrase	integrase	K7P6P6	Enterobacteria_phage	3.9e-202	100.0
AKK38105.1\|1809166_1809385_-	excisionase	Q77WA4	Escherichia_phage	1.1e-34	98.6
AKK38106.1\|1809424_1809592_-	hypothetical protein	A5VWB7	Enterobacteria_phage	8.3e-27	96.4
AKK38107.2\|1809828_1810527_-	DUF1311 domain-containing protein	J9Q6K3	Salmonella_phage	4.8e-100	80.6
AKK38108.2\|1810657_1811206_-	ead/Ea22-like family protein	K7PKY4	Enterobacterial_phage	7.7e-45	58.2
AXF91927.1\|1811202_1811424_-	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	6.4e-35	98.6
AKK38110.1\|1811522_1811804_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	5.5e-47	98.9
AKK38111.1\|1811814_1812006_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
AKK38112.1\|1811978_1812161_-	DUF1317 family protein	A0A1U8QQC1	Enterobacteria_phage	2.6e-26	95.0
AKK38113.1\|1812157_1812838_-	exonuclease	B6DZ61	Enterobacteria_phage	9.6e-130	97.3
AKK38114.1\|1812834_1813620_-	phage recombination protein Bet	A0A0N7KZJ3	Stx2-converting_phage	1.1e-148	100.0
AKK38115.2\|1813625_1814042_-	Host-nuclease inhibitor protein gam	C6ZCV5	Enterobacteria_phage	1.9e-72	97.8
AXF92172.1\|1813975_1814266_-	host cell division inhibitory peptide Kil	M1FN78	Enterobacteria_phage	1.4e-42	100.0
AKK38118.1\|1814345_1814714_-	DUF2528 family protein	M1FPD2	Enterobacteria_phage	2.2e-64	98.4
AKK38119.1\|1814902_1815784_-	hypothetical protein	NA	NA	NA	NA
AKK38120.2\|1815780_1816104_-	antitermination protein	A4KWR8	Enterobacteria_phage	1.4e-49	94.3
AKK38121.1\|1816457_1816862_-	hypothetical protein	Q716D7	Shigella_phage	4.3e-69	98.5
AKK38122.1\|1816858_1817491_-	LexA family transcriptional regulator	K7P850	Enterobacteria_phage	1.6e-118	99.5
AKK38123.1\|1817595_1817811_+	XRE family transcriptional regulator	Q716D6	Shigella_phage	1.4e-31	100.0
AKK38124.1\|1817930_1818224_+	hypothetical protein	A2SY75	Escherichia_phage	3.7e-46	100.0
AXF91928.1\|1818256_1819156_+	Replication protein O	A0A0K2FJ31	Enterobacteria_phage	7.9e-172	99.3
AKK38125.2\|1819152_1819854_+	Replication protein P	A0A0P0ZD31	Stx2-converting_phage	1.2e-127	98.3
AKK38126.1\|1819850_1820141_+	protein ren	O48423	Enterobacteria_phage	1.1e-42	92.7
AKK38128.2\|1820196_1820655_+	recombination protein NinB	A0A220NRM1	Escherichia_phage	7.3e-81	100.0
AKK38129.1\|1820651_1821179_+	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	9.5e-101	100.0
AKK38130.1\|1821175_1821352_+	NinE family protein	K7PHE6	Enterobacteria_phage	3.9e-27	96.6
AKK38131.2\|1821312_1821696_+	DUF2591 domain-containing protein	Q76H72	Enterobacteria_phage	1.7e-62	96.5
AKK38132.1\|1821688_1821883_+	protein ninF	NA	NA	NA	NA
AKK38133.1\|1821902_1822265_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	7.3e-60	96.5
1822113:1822128	attL	NA	NA	NA	NA
AKK38134.1\|1822261_1822402_+	YlcG family protein	K7PHH3	Enterobacteria_phage	1.1e-08	69.8
AKK38135.1\|1822487_1822871_+	antitermination protein Q	A0A088CD47	Shigella_phage	4.4e-55	83.3
AKK38136.1\|1823059_1824142_-	porin OmpD	Q1MVN1	Enterobacteria_phage	4.4e-161	78.7
AKK38137.1\|1824730_1824946_+\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	9.0e-34	100.0
AKK38138.1\|1824945_1825443_+	lysozyme	M1FJA0	Enterobacteria_phage	2.1e-89	96.4
AKK38139.2\|1825439_1825907_+\|lysis	lysis protein	Q9AZ06	Salmonella_phage	4.1e-71	91.6
AKK38140.1\|1825894_1826047_+	hypothetical protein	Q716B2	Shigella_phage	2.1e-21	100.0
AKK38141.1\|1826280_1826691_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.7e-55	77.8
AXF91929.1\|1826748_1826982_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	96.3
AXF91930.1\|1827087_1827231_+	DNA-packaging protein	NA	NA	NA	NA
AKK38142.1\|1827370_1827916_+\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
AKK38143.1\|1827890_1829816_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.5
AKK38144.1\|1829812_1830019_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
AKK38145.1\|1830015_1830897_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	5.0e-163	99.6
AKK38146.1\|1831045_1832287_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	9.1e-94	42.9
AKK38147.1\|1832288_1832546_+	AlpA family phage regulatory protein	NA	NA	NA	NA
AKK38148.1\|1832602_1833181_+	antirepressor protein	A0A1W6JPH8	Morganella_phage	9.2e-57	63.0
AXF91931.1\|1833212_1834208_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
AKK38150.1\|1834200_1834386_+	hypothetical protein	NA	NA	NA	NA
AKK38151.1\|1834385_1834577_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	1.5e-11	59.3
AKK38152.1\|1834577_1834799_+	hypothetical protein	NA	NA	NA	NA
AKK38153.1\|1834816_1835116_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AKK38154.1\|1835112_1836867_+	DNA primase	Q7M2A8	Enterobacteria_phage	6.0e-91	40.1
1835293:1835308	attR	NA	NA	NA	NA
AKK38155.2\|1837213_1837465_+	hypothetical protein	NA	NA	NA	NA
AKK38156.1\|1837461_1837884_+	single-stranded DNA-binding protein	NA	NA	NA	NA
AKK38157.1\|1838101_1839142_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	3.0e-66	42.2
AKK38158.1\|1839151_1839493_+\|head	head decoration protein	NA	NA	NA	NA
AKK38159.1\|1839504_1839888_+	AlpA family phage regulatory protein	NA	NA	NA	NA
AXF91932.1\|1839880_1840090_+	hypothetical protein	NA	NA	NA	NA
AKK38160.1\|1840089_1840632_+\|terminase	terminase	O64316	Escherichia_phage	3.4e-37	48.8
AKK38161.1\|1840643_1840925_+	hypothetical protein	NA	NA	NA	NA
AXF91933.1\|1841042_1841318_+	hypothetical protein	NA	NA	NA	NA
AKK38162.2\|1842494_1843814_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.1e-233	98.6
AKK38163.1\|1843823_1844156_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.1e-54	98.2
AKK38164.1\|1844211_1845237_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.8e-188	97.7
AKK38165.2\|1845278_1845674_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	1.0e-54	90.9
AKK38166.1\|1845685_1846039_+\|tail	phage tail protein	A0A2R9YJJ5	Escherichia_phage	7.6e-62	99.1
AKK38167.1\|1846050_1846629_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	8.6e-79	97.4
AKK38168.1\|1846625_1847021_+\|tail	phage tail protein	A0A2R9YJI2	Escherichia_phage	6.5e-70	99.2
AKK38169.2\|1847028_1847769_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	2.5e-131	99.2
AKK38170.1\|1847784_1848207_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	1.1e-70	96.4
AKK38171.2\|1848188_1848623_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
AKK38172.1\|1848615_1851195_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	97.4
AKK38173.1\|1851191_1851521_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
AKK38174.1\|1851520_1852219_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.6e-132	98.7
AKK38175.1\|1852224_1852968_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.5e-147	96.8
AKK38176.2\|1852865_1853537_+\|tail	tail assembly protein	C6ZCZ4	Enterobacteria_phage	3.8e-102	98.2
AKK38177.1\|1853597_1857095_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	98.0
AKK38178.1\|1857165_1857765_+	Ail/Lom family protein	A5LH44	Enterobacteria_phage	8.2e-109	97.5
AKK38179.1\|1857829_1861108_+\|tail	phage tail protein	X2KTY7	Enterobacteria_phage	3.2e-05	59.2
AKK38180.1\|1861107_1861692_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	3.0e-103	94.3
AKK38181.1\|1861765_1863097_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.4e-20	37.1

DBSCAN-SWA_3

2234323 : 2283686

Shigella_phage(47.27%)

head,plate,tail,portal,transposase,protease,terminase,tRNA,holin,integrase,capsid

attL 2234949:2234966|attR 2253658:2253675

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKK38524.1\|2234323_2235430_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
2234949:2234966	attL	NA	NA	NA	NA
AKK38525.1\|2235483_2235945_-	NUDIX hydrolase	NA	NA	NA	NA
AKK38526.1\|2235954_2236608_-	23S rRNA pseudouridine synthase E	NA	NA	NA	NA
AKK38527.1\|2236779_2238030_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
AKK41741.2\|2238431_2239778_+	DUF4433 domain-containing protein	NA	NA	NA	NA
AKK38528.1\|2240485_2241601_+	hypothetical protein	A0A2D1GR68	Pseudomonas_phage	3.6e-25	39.0
AKK38529.1\|2241812_2242940_-\|integrase	integrase	O21925	Phage_21	2.5e-122	61.2
AXF91954.1\|2242920_2243166_-	excisionase	NA	NA	NA	NA
AKK38530.2\|2243221_2243758_-	HD family hydrolase	A5LH62	Enterobacteria_phage	1.8e-91	92.6
AKK38531.1\|2243886_2244711_-	DUF2303 family protein	U5P439	Shigella_phage	1.5e-148	98.5
AKK38532.1\|2244776_2245139_-	hypothetical protein	Q8SBF8	Shigella_phage	2.5e-60	99.2
AXF91955.1\|2245418_2245760_+	hypothetical protein	NA	NA	NA	NA
AKK38533.1\|2245697_2246006_-	hypothetical protein	I6PDF6	Cronobacter_phage	5.0e-09	80.0
AKK38534.1\|2246179_2246854_-	LexA family transcriptional repressor	U5P0T5	Shigella_phage	1.2e-132	100.0
AKK38535.2\|2246944_2247145_+	transcriptional regulator	U5P445	Shigella_phage	1.9e-30	98.5
AKK38536.1\|2247188_2247740_+	protein YmfL	S5FXP0	Shigella_phage	2.2e-100	98.4
AXF91956.1\|2247915_2248095_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
AKK38538.1\|2248084_2249026_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	4.9e-140	93.0
AKK38539.1\|2249022_2249517_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	1.8e-85	96.9
AKK38540.1\|2249516_2250170_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	4.0e-125	98.6
AKK38541.1\|2250166_2250493_+	LexA family transcriptional regulator	A5LH73	Enterobacteria_phage	3.5e-53	99.1
AKK38542.1\|2250489_2250879_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	1.0e-67	97.7
AKK38543.1\|2250898_2251696_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	5.2e-151	100.0
AKK38544.2\|2251703_2252693_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	3.3e-195	99.4
AKK38545.1\|2252710_2253067_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	2.3e-58	92.0
AKK38546.1\|2253046_2254261_-	hypothetical protein	NA	NA	NA	NA
2253658:2253675	attR	NA	NA	NA	NA
AKK38547.1\|2254263_2255439_-	hypothetical protein	NA	NA	NA	NA
AKK38548.1\|2255730_2256057_+\|holin	phage holin, lambda family	U5P0K7	Shigella_phage	1.2e-56	99.1
AKK38549.1\|2256060_2256537_+	lysozyme	K7PKX1	Enterobacterial_phage	8.6e-85	96.8
AXF91957.1\|2256753_2256936_+	hypothetical protein	K7PHU6	Enterobacteria_phage	3.2e-16	96.7
AKK38551.1\|2257029_2257320_-	increased serum survival lipoprotein Iss	C6ZCX3	Enterobacteria_phage	1.0e-43	91.7
AXF91958.1\|2257412_2257553_+	Rz1 lytic protein	U5P461	Shigella_phage	3.5e-10	81.0
AXF91959.1\|2257844_2258195_+	HNH endonuclease	Q8HA82	Salmonella_phage	2.0e-62	94.8
AKK38552.2\|2258311_2258815_+\|terminase	phage terminase small subunit P27 family	U5P067	Shigella_phage	1.4e-88	100.0
AKK38553.1\|2258811_2260545_+\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	0.0e+00	98.8
AKK38554.1\|2260556_2260739_+	hypothetical protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
AKK38555.1\|2260738_2261980_+\|portal	phage portal protein	U5P411	Shigella_phage	2.0e-242	99.8
AXF91960.1\|2261921_2262608_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	1.1e-125	100.0
AKK38556.1\|2262622_2263828_+\|capsid	phage major capsid protein	U5P0G9	Shigella_phage	9.1e-224	99.5
AKK38557.1\|2263876_2264077_+	hypothetical protein	S5FNU1	Shigella_phage	3.2e-25	95.5
AKK38558.1\|2264079_2264403_+\|head,tail	phage gp6-like head-tail connector protein	S5FKK6	Shigella_phage	5.1e-57	100.0
AKK38559.1\|2264399_2264810_+\|head,tail	head-tail adaptor protein	M1FJ87	Enterobacteria_phage	3.1e-75	100.0
AKK38560.1\|2264784_2265291_+	hypothetical protein	M1FPE2	Enterobacteria_phage	3.2e-90	99.4
AKK38561.1\|2265287_2265848_+	hypothetical protein	Q8SBH4	Shigella_phage	1.8e-105	99.5
AKK38562.1\|2265856_2266027_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	2.7e-25	98.2
AKK38563.1\|2266010_2267507_+\|tail	phage tail protein	M1FN90	Enterobacteria_phage	7.0e-274	99.4
AKK38564.1\|2267506_2267863_+\|tail	phage tail protein	U5P076	Shigella_phage	9.0e-63	99.2
AKK38565.1\|2267862_2268132_+\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	3.5e-43	100.0
AXF91961.1\|2268098_2268281_+	hypothetical protein	NA	NA	NA	NA
AKK38566.1\|2268273_2270109_+\|tail	phage tail tape measure protein	Q8SBG9	Shigella_phage	1.9e-305	99.0
AKK38567.2\|2270127_2271498_+	DNA circularization protein	S5FUX4	Shigella_phage	9.0e-252	97.8
AKK38568.1\|2271494_2272574_+\|plate	baseplate protein	U5P0H6	Shigella_phage	2.5e-204	98.6
AKK38569.1\|2272573_2273122_+\|plate	phage baseplate assembly protein V	U5P081	Shigella_phage	5.1e-97	98.9
AKK38570.2\|2273118_2273547_+\|tail	phage tail protein	U5P0R9	Shigella_phage	2.6e-80	99.3
AKK38571.1\|2273533_2274592_+\|plate	baseplate J/gp47 family protein	M1FQW3	Enterobacteria_phage	4.7e-200	98.6
AKK38572.1\|2274582_2275167_+	DUF2313 domain-containing protein	O22003	Shigella_phage	1.7e-111	97.9
AKK38573.1\|2275170_2276094_+	hypothetical protein	U5P0I1	Shigella_phage	4.2e-51	98.1
AXF91962.1\|2276068_2276272_+	hypothetical protein	NA	NA	NA	NA
AKK38574.1\|2276237_2276846_-\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	7.6e-94	87.3
AKK38575.1\|2276845_2277343_-\|tail	phage tail protein	Q9MCR6	Enterobacteria_phage	1.5e-55	68.9
AXF91963.1\|2277373_2277565_+	DNA invertase	A0A1S6L009	Salmonella_phage	1.9e-14	83.3
AKK38576.1\|2277598_2279488_-	DUF262 domain-containing protein	NA	NA	NA	NA
AKK38577.2\|2280303_2280495_+	isocitrate dehydrogenase	Q77Z09	Phage_21	4.4e-24	100.0
AKK38578.1\|2280595_2280919_-	anti-adapter protein IraM	Q20GJ2	Phage_258-320	3.0e-41	65.4
AXF91964.1\|2281389_2281596_+	hypothetical protein	NA	NA	NA	NA
AKK38579.1\|2281501_2282011_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	3.2e-13	32.3
AKK38580.1\|2282329_2282734_-	DUF1398 domain-containing protein	NA	NA	NA	NA
AKK38581.1\|2282954_2283686_-	helix-turn-helix-type transcriptional regulator	Q9EYF2	Enterobacteria_phage	3.5e-53	50.5

DBSCAN-SWA_4

2483246 : 2587882

106

Escherichia_phage(38.18%)

tail,transposase,lysis,coat,protease,terminase,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKK38758.2\|2483246_2484479_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
AKK38759.1\|2484733_2485717_+	zinc transporter ZntB	NA	NA	NA	NA
AXF91982.1\|2485991_2486165_+	hypothetical protein	NA	NA	NA	NA
AKK38760.1\|2486194_2487568_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.1e-53	33.4
AKK38761.1\|2487696_2488632_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.9e-146	98.8
AKK38762.1\|2488683_2489919_-	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	5.5e-240	98.8
AKK38763.2\|2489920_2490136_-	hypothetical protein	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
AKK38764.2\|2490214_2490424_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	6.1e-27	98.4
AXF92179.1\|2490416_2490611_-	restriction alleviation and modification enhancement protein	A0A0U2QQP4	Escherichia_phage	5.8e-32	96.9
AXF91983.1\|2490667_2491477_-	DNA recombination protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
AKK38765.1\|2491469_2494070_-	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	3.0e-248	63.5
AKK38766.2\|2494171_2494447_-	protein RacC	A0A0U2QW85	Escherichia_phage	1.4e-42	96.7
AKK38767.2\|2494521_2494692_-	hypothetical protein	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
AKK38768.1\|2494691_2494913_-	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	2.0e-36	98.6
AKK38769.2\|2495353_2495842_+	superinfection exclusion protein B	NA	NA	NA	NA
AKK38770.1\|2495838_2495994_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.1e-08	55.3
AKK38771.1\|2496004_2496184_-	hypothetical protein	NA	NA	NA	NA
AKK38772.1\|2496393_2496813_-	hypothetical protein	K7PK07	Enterobacteria_phage	8.8e-25	65.1
AKK38773.1\|2496913_2497195_+	Cro/Cl family transcriptional regulator	K7PHA1	Enterobacteria_phage	1.9e-23	71.2
AKK38774.1\|2497178_2497604_+	Rha family transcriptional regulator	NA	NA	NA	NA
AKK38775.1\|2497675_2498746_+	phage replisome organizer	A0A088CD36	Shigella_phage	4.7e-62	64.6
AKK38776.1\|2498786_2499209_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.8e-63	88.5
AKK38777.1\|2499543_2501547_+\|holin	high-affinity choline transporter BetT	A0A2I7QNT1	Vibrio_phage	3.4e-21	26.2
AKK38778.1\|2501610_2502888_+	DUF2254 domain-containing protein	NA	NA	NA	NA
AKK38779.1\|2503018_2503900_-	LysR family transcriptional regulator	NA	NA	NA	NA
AKK38780.1\|2503896_2504589_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
AKK38781.1\|2504600_2505800_-	MFS transporter	NA	NA	NA	NA
AXF91984.1\|2506161_2506305_+	hypothetical protein	NA	NA	NA	NA
AKK38782.1\|2506463_2506676_+	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	3.0e-21	75.7
AXF91985.1\|2507026_2507242_+	hypothetical protein	NA	NA	NA	NA
AKK38783.1\|2507144_2507744_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.1e-105	92.0
AKK38784.1\|2507743_2508034_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.7e-46	87.5
AKK38785.1\|2508030_2508573_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.9e-76	75.7
AXF91986.1\|2509892_2511166_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.8e-170	95.7
AKK38786.2\|2511553_2511928_+	tolA family protein	NA	NA	NA	NA
AKK38787.1\|2512179_2512395_+\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	1.3e-32	94.4
AKK38788.1\|2512394_2512892_+	lysozyme	M1FJA0	Enterobacteria_phage	3.2e-90	97.0
AXF91987.1\|2513108_2513294_+	hypothetical protein	K7PHU6	Enterobacteria_phage	3.6e-15	96.5
AKK38790.1\|2513490_2514948_+	Trk system potassium uptake protein TrkG	NA	NA	NA	NA
AXF91988.1\|2514886_2515168_+	hypothetical protein	NA	NA	NA	NA
AKK38791.1\|2515085_2515877_+	transcriptional regulator	R4TG31	Halovirus	2.8e-48	40.2
AKK38792.2\|2515869_2516802_+	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	2.2e-84	55.2
AKK41746.1\|2516779_2516989_+	hypothetical protein	NA	NA	NA	NA
AKK38793.1\|2516992_2518087_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	5.9e-113	80.5
AKK38794.2\|2518067_2519369_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	59.6
AKK38795.1\|2519371_2520778_+	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	3.0e-186	69.0
AKK38796.2\|2520761_2521874_+	hypothetical protein	I6PD76	Cronobacter_phage	4.2e-114	54.5
AKK38797.2\|2521978_2522743_+	hypothetical protein	G8C7P6	Escherichia_phage	2.0e-83	63.8
AKK38798.2\|2522841_2523981_+\|coat	P22 coat - protein 5 family protein	G8C7P7	Escherichia_phage	7.4e-159	75.0
AKK38800.1\|2524203_2524599_+	protein singed	NA	NA	NA	NA
AKK38801.1\|2524598_2524982_+	glutamate 5-kinase	A0A0P0I456	Acinetobacter_phage	2.2e-14	39.4
AKK38802.1\|2524982_2525363_+	HK97 gp10 family phage protein	A0A059VF88	Pseudomonas_phage	1.1e-18	44.4
AKK38803.1\|2525359_2525752_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
AKK38804.1\|2525778_2526741_+	hypothetical protein	A0A059VG08	Pseudomonas_phage	5.8e-56	39.2
AKK38805.1\|2526801_2527353_+	hypothetical protein	NA	NA	NA	NA
AKK38806.2\|2527358_2527559_+	hypothetical protein	NA	NA	NA	NA
AKK38807.1\|2527724_2530958_+\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	1.3e-104	33.3
AKK38808.1\|2530950_2531289_+\|tail	phage tail protein	H6WZM2	Escherichia_phage	4.0e-28	50.0
AKK38809.1\|2531288_2531987_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	9.6e-125	93.1
AKK38810.1\|2531992_2532736_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	8.0e-146	96.7
AKK41747.2\|2532633_2533281_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.4e-109	94.9
AKK38811.1\|2533341_2536755_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	98.0
AKK38812.1\|2536824_2537424_+	Ail/Lom family protein	A0A291AWV3	Escherichia_phage	5.7e-110	98.5
AXF92180.1\|2537488_2540887_+	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	8.2e-12	36.4
AKK38813.1\|2540886_2541462_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.5e-102	94.8
AKK38814.1\|2541559_2542150_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	9.5e-25	38.8
AKK38815.2\|2542466_2542700_-	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
AKK38817.2\|2543659_2544094_-	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.4e-28	52.8
AKK38818.1\|2544234_2545368_-	porin OmpS2	Q1MVN1	Enterobacteria_phage	1.5e-103	54.1
AKK38819.1\|2545733_2549258_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
AKK38820.1\|2549531_2549798_+	DUF333 domain-containing protein	NA	NA	NA	NA
AKK38821.1\|2549794_2550217_-	heat shock protein HslJ	NA	NA	NA	NA
AKK38822.1\|2550327_2551317_-	2-hydroxyacid dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	2.5e-70	44.0
AKK38823.1\|2551524_2554164_+	YdbH family protein	NA	NA	NA	NA
AKK38824.1\|2554160_2554346_+	YnbE family lipoprotein	NA	NA	NA	NA
AKK38825.2\|2554353_2554680_+	DUF1318 domain-containing protein	NA	NA	NA	NA
AXF92181.1\|2554851_2555064_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AXF92182.1\|2555028_2555211_+	phenylacetic acid degradation protein PaaX	NA	NA	NA	NA
AKK38827.1\|2555192_2555783_+	phenylacetic acid degradation protein PaaY	NA	NA	NA	NA
AKK38828.1\|2556013_2556874_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA
AKK38829.1\|2558471_2559077_+	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
AKK38830.1\|2559076_2559973_+	hypothetical protein	NA	NA	NA	NA
AKK38831.1\|2559988_2561746_+	alpha/beta fold hydrolase	NA	NA	NA	NA
AKK38832.2\|2561759_2563052_+	hypothetical protein	NA	NA	NA	NA
AKK38833.1\|2563105_2563711_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
AKK38834.1\|2563911_2567814_+	ATP-dependent RNA helicase HrpA	A0A1V0SIV3	Klosneuvirus	1.3e-53	29.7
AKK38835.1\|2568085_2568886_+	YdcF family protein	NA	NA	NA	NA
AKK38836.1\|2569082_2570522_+	aldehyde dehydrogenase	NA	NA	NA	NA
AKK38837.1\|2570562_2571564_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
AKK38838.2\|2571752_2572283_+	cytochrome b561	A0A0U2QLA7	Escherichia_phage	4.1e-19	44.9
AKK38839.1\|2572527_2572701_+	hypothetical protein	A0A0R6PI25	Moraxella_phage	2.6e-07	59.6
AKK38840.1\|2572772_2572922_-	type I toxin-antitoxin system hok family toxin	NA	NA	NA	NA
AKK38841.1\|2573320_2574961_+	HAMP domain-containing protein	NA	NA	NA	NA
AKK38842.2\|2574998_2575922_-	LysR family transcriptional regulator	NA	NA	NA	NA
AKK38843.1\|2576138_2577482_+	VOC family protein	NA	NA	NA	NA
AKK38844.1\|2577706_2579362_+	glucan biosynthesis protein D	NA	NA	NA	NA
AXF91989.1\|2579282_2579486_-	hypothetical protein	NA	NA	NA	NA
AKK38845.1\|2579501_2579726_+	DUF465 domain-containing protein	NA	NA	NA	NA
AKK38846.1\|2579788_2580328_+	50S ribosomal protein L7/L12-serine acetyltransferase	NA	NA	NA	NA
AKK38847.1\|2580319_2581300_-	hypothetical protein	NA	NA	NA	NA
AKK38848.1\|2581423_2582416_+	TDT family transporter	NA	NA	NA	NA
AKK38849.1\|2582412_2583006_+	tellurite resistance methyltransferase TehB	NA	NA	NA	NA
AKK38850.1\|2583344_2584013_+	DUF3313 domain-containing protein	NA	NA	NA	NA
AKK38851.2\|2584047_2585259_-	benzoate transporter BenE	NA	NA	NA	NA
AKK38852.1\|2585311_2585848_+	XRE family transcriptional regulator	NA	NA	NA	NA
AKK38853.1\|2585920_2587882_+\|protease	collagenase-like protease	Q6DW11	Phage_TP	1.6e-23	27.9

DBSCAN-SWA_5

2710280 : 2743114

Enterobacteria_phage(58.06%)

tail,portal,lysis,protease,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKK38952.1\|2710280_2710862_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.0e-100	91.7
AKK38953.2\|2710861_2714260_-	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	9.1e-11	35.5
AKK38954.1\|2714324_2714924_-	Ail/Lom family protein	H6WZM8	Escherichia_phage	2.5e-105	93.5
AXF92001.1\|2714991_2718471_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	89.9
AKK41748.2\|2718531_2719173_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.5e-95	86.0
AKK38955.1\|2719070_2719814_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.7e-146	96.4
AKK38956.1\|2719819_2720518_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	5.6e-133	98.7
AKK38957.1\|2720527_2720857_-\|tail	phage tail protein	A0A291AWW9	Escherichia_phage	1.7e-60	100.0
AKK38958.1\|2723893_2724223_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
AKK38959.2\|2724231_2724618_-\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	3.6e-65	99.2
AKK38960.2\|2724678_2725422_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	7.8e-133	100.0
AKK38961.2\|2725433_2725835_-\|tail	phage tail protein	A0A291AWY2	Escherichia_phage	8.3e-73	100.0
AKK38962.1\|2725831_2726410_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.2e-102	99.5
AKK38963.1\|2726421_2726697_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
AKK38964.1\|2726689_2727058_-	DUF2190 family protein	A0A291AWX2	Escherichia_phage	6.3e-51	99.1
AKK38965.2\|2727099_2729127_-\|protease	Clp protease ClpP	A5LH30	Enterobacteria_phage	0.0e+00	99.1
AKK38966.2\|2729071_2730580_-\|portal	phage portal protein	A5LH29	Enterobacteria_phage	1.1e-287	99.4
AXF92002.1\|2730579_2730792_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
AKK38967.1\|2730788_2732888_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	0.0e+00	98.9
AKK38968.1\|2732896_2733436_-	DUF1441 family protein	A5LH26	Enterobacteria_phage	1.8e-94	100.0
AKK38969.1\|2733985_2734192_-	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	3.4e-22	79.4
AKK38970.2\|2734487_2734661_-	protein GnsB	NA	NA	NA	NA
AXF92185.1\|2734833_2734989_-	hypothetical protein	NA	NA	NA	NA
AXF92186.1\|2735135_2735324_-	cold-shock protein	NA	NA	NA	NA
AKK38971.1\|2735334_2735547_-	cold-shock protein CspI	A0A1W6JNX5	Morganella_phage	1.6e-22	74.3
AKK38972.1\|2735910_2736408_-	DUF2514 domain-containing protein	NA	NA	NA	NA
AKK38973.1\|2736404_2736938_-	lysozyme	K7PLY1	Enterobacteria_phage	8.4e-97	93.2
AKK38974.1\|2736934_2737246_-	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	5.0e-25	62.6
AKK38975.1\|2737250_2737466_-\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	1.3e-32	94.4
AKK38976.2\|2737717_2738092_-	tolA family protein	NA	NA	NA	NA
AKK38977.1\|2738263_2738692_-	cell envelope integrity protein TolA	NA	NA	NA	NA
AKK38978.2\|2739058_2739187_-	DUF3927 domain-containing protein	H6WZJ7	Escherichia_phage	4.7e-06	96.4
AKK38979.2\|2739225_2739552_-	hypothetical protein	NA	NA	NA	NA
AKK38980.1\|2739908_2740730_-	antitermination protein	K7P7B9	Enterobacteria_phage	1.8e-77	58.6
AKK38981.1\|2740726_2741101_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	8.4e-35	62.7
AKK38982.1\|2741113_2742163_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	2.7e-107	54.0
AXF92187.1\|2742164_2742443_-	hypothetical protein	I6PCV7	Cronobacter_phage	4.3e-12	48.4
AKK38983.1\|2742901_2743114_-	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	1.7e-29	97.1

DBSCAN-SWA_6

2748311 : 2762949

Escherichia_phage(30.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKK38989.1\|2748311_2748566_-	DNA-binding protein	A0A2I6PIE5	Escherichia_phage	2.8e-18	60.3
AKK38990.1\|2748645_2749065_+	helix-turn-helix domain-containing protein	A0A2I6PIE7	Escherichia_phage	4.2e-19	47.5
AKK38991.2\|2749362_2749518_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	3.4e-06	51.1
AKK38992.2\|2749477_2750095_+	hypothetical protein	NA	NA	NA	NA
AKK38993.1\|2750581_2750770_+	division inhibition protein DicB	NA	NA	NA	NA
AKK38994.1\|2750766_2750958_+	DUF1482 family protein	NA	NA	NA	NA
AKK38995.1\|2751051_2753523_+	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	56.7
AXF92004.1\|2753595_2753847_+	DNA-binding protein	S4TND0	Salmonella_phage	2.2e-15	50.0
AKK38996.2\|2753866_2755162_+	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	6.7e-156	62.3
AXF92005.1\|2755163_2755292_-	transporter	NA	NA	NA	NA
AKK38997.1\|2755349_2756369_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	3.3e-17	26.2
AKK38998.1\|2756380_2757595_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
AXF92006.1\|2757575_2757764_-	hypothetical protein	NA	NA	NA	NA
AKK38999.1\|2757800_2758127_-	YnfA family protein	A0A218MNG8	uncultured_virus	7.6e-24	55.6
AKK39000.1\|2758261_2758603_+	DUF1283 family protein	NA	NA	NA	NA
AKK39001.1\|2758637_2759198_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
AKK39002.2\|2759200_2759911_-	YnfC family lipoprotein	NA	NA	NA	NA
AKK39003.2\|2760018_2760324_+	DUF1161 domain-containing protein	NA	NA	NA	NA
AKK39004.1\|2760522_2762949_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	3.8e-213	49.1

DBSCAN-SWA_7

3245466 : 3253200

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKK39444.1\|3245466_3246573_-	DegT/DnrJ/EryC1/StrS family aminotransferase	E5ES42	Bathycoccus_sp._RCC1105_virus	6.5e-43	32.5
AKK39445.1\|3246565_3247033_-	N-acetyltransferase	NA	NA	NA	NA
AKK39446.2\|3247019_3247430_-	WxcM-like domain-containing protein	NA	NA	NA	NA
AKK39447.1\|3247447_3248323_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.5
AKK39448.1\|3248380_3249280_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	8.2e-28	34.5
AKK39449.1\|3249279_3250365_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.0e-102	54.5
AXF92050.1\|3250437_3250701_+	hypothetical protein	NA	NA	NA	NA
AKK39451.1\|3250737_3251631_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	2.3e-46	42.4
AKK39452.1\|3251805_3253200_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.7e-19	31.9

DBSCAN-SWA_8

3344517 : 3353960

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKK39521.1\|3344517_3345654_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	5.9e-164	98.4
AKK39522.1\|3345650_3347651_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.4
AKK39523.1\|3347775_3348237_+	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
AKK39524.2\|3348278_3348749_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
AKK39525.2\|3348795_3349515_-	DNA-binding response regulator	NA	NA	NA	NA
AKK39526.1\|3349511_3351197_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	7.3e-304	99.5
AKK39527.1\|3351418_3352150_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	2.2e-111	99.0
AKK39528.1\|3352209_3352317_+	hypothetical protein	NA	NA	NA	NA
AKK39529.1\|3352297_3353029_-	ABC transporter permease	NA	NA	NA	NA
AKK39530.1\|3353033_3353960_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-23	30.8

DBSCAN-SWA_9

3567567 : 3642587

Enterobacteria_phage(54.55%)

head,tail,portal,lysis,terminase,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKK39719.1\|3567567_3568380_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
AKK39720.1\|3568379_3569393_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
AKK39721.1\|3569458_3570595_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	8.5e-22	29.1
AKK39722.1\|3570693_3571689_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA
AKK39723.1\|3571685_3572864_-	MFS transporter	NA	NA	NA	NA
AXF92064.1\|3572805_3573027_+	hypothetical protein	NA	NA	NA	NA
AKK39724.1\|3573128_3574349_-	3-oxoacyl-ACP synthase I	NA	NA	NA	NA
AKK39725.1\|3574507_3576514_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
AKK39726.1\|3576634_3576913_-	YfcL family protein	NA	NA	NA	NA
AKK39727.1\|3576946_3577495_-	elongation factor P hydroxylase	NA	NA	NA	NA
AKK39728.1\|3577494_3578304_-	hypothetical protein	NA	NA	NA	NA
AKK39729.1\|3578303_3579128_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
AKK39730.1\|3579130_3580216_-	chorismate synthase	A0A291AU41	Pandoravirus	7.0e-90	47.8
AKK39731.1\|3580250_3581183_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
AKK39732.1\|3581348_3581900_+	endonuclease SmrB	NA	NA	NA	NA
AKK39733.1\|3582015_3582858_-	DUF2544 domain-containing protein	NA	NA	NA	NA
AKK39734.1\|3582859_3583384_-	fimbrial protein	NA	NA	NA	NA
AKK39735.1\|3583380_3583851_-	fimbrial protein	NA	NA	NA	NA
AKK39736.2\|3583847_3584462_-	fimbrial protein	NA	NA	NA	NA
AKK39737.1\|3584370_3585120_-	fimbrial protein	NA	NA	NA	NA
AKK39738.1\|3587864_3588431_-	type 1 fimbrial protein	NA	NA	NA	NA
AKK39739.1\|3589091_3589577_-	phosphohistidine phosphatase	NA	NA	NA	NA
AKK39740.1\|3589779_3591924_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
AKK39741.1\|3591923_3593234_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
AKK39742.2\|3593415_3593700_-	DUF406 family protein	NA	NA	NA	NA
AXF92065.1\|3593784_3594036_-	hypothetical protein	NA	NA	NA	NA
AKK39743.2\|3594071_3595412_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
AKK39744.1\|3595473_3596229_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
AXF92066.1\|3596254_3596425_-	hypothetical protein	NA	NA	NA	NA
AKK39745.1\|3596522_3597455_+	transporter	E7DYY8	Enterobacteria_phage	1.2e-167	100.0
AKK39746.1\|3597766_3598924_+	DUF4102 domain-containing protein	A5VW56	Enterobacteria_phage	2.8e-222	99.7
AKK41755.1\|3599002_3601165_-	hypothetical protein	A5VW57	Enterobacteria_phage	7.2e-62	77.5
AXF92201.1\|3601265_3602156_-	phage antirepressor Ant	I6R977	Salmonella_phage	1.3e-166	98.6
AKK41756.1\|3602218_3602488_-	hypothetical protein	NA	NA	NA	NA
AKK39747.1\|3602484_3602643_-	Arc family DNA-binding protein	I6S1K8	Salmonella_phage	9.3e-20	92.3
AKK39748.1\|3602733_3602991_+	Arc family DNA-binding protein	A0A2H4FVY6	Salmonella_phage	2.0e-40	97.6
AKK39749.1\|3602983_3603253_+	hypothetical protein	A0A2H4FNC7	Salmonella_phage	2.9e-45	100.0
AKK39750.2\|3603421_3603706_+	hypothetical protein	A0A2H4FNB7	Salmonella_phage	5.9e-41	98.9
AKK39751.2\|3603796_3604165_+	hypothetical protein	I6S5X4	Salmonella_phage	5.5e-63	97.5
AKK39752.1\|3604189_3606028_-	DNA transfer protein	A0A192Y934	Salmonella_phage	1.4e-247	74.5
AKK39753.1\|3606027_3607443_-	acyltransferase	I6RSG0	Salmonella_phage	1.3e-200	80.7
AKK39754.1\|3607452_3608145_-	DNA transfer protein	A0A2H4FUQ9	Salmonella_phage	1.3e-113	96.1
AKK39755.1\|3608147_3608603_-	DUF2824 family protein	A5VW67	Enterobacteria_phage	6.7e-87	98.7
AKK39756.1\|3608602_3609304_-\|tail	phage tail protein	A0A2H4FWI9	Salmonella_phage	1.6e-79	98.3
AKK39757.1\|3609303_3610722_-	hypothetical protein	Q716G7	Shigella_phage	1.2e-275	99.2
AKK39758.1\|3610731_3611193_-\|head	head DNA stabilization protein	A5VW70	Enterobacteria_phage	7.1e-84	100.0
AKK39759.2\|3611173_3611362_-	hypothetical protein	A0A088CPR7	Enterobacteria_phage	2.9e-28	100.0
AKK39760.1\|3612676_3613570_-	scaffolding protein	A0A088CPT0	Enterobacteria_phage	4.3e-130	99.0
AKK39761.1\|3613660_3615859_-\|portal	portal protein	A5VW74	Enterobacteria_phage	0.0e+00	97.1
AKK39762.1\|3615860_3617276_-\|terminase	PBSX family phage terminase large subunit	A5VW75	Enterobacteria_phage	7.5e-278	99.6
AKK39763.2\|3617272_3617695_-	ubiquitin carboxyl-hydrolase	Q716H4	Shigella_phage	7.2e-75	100.0
AKK39764.1\|3617718_3617898_-	hypothetical protein	A0A088CPS9	Enterobacteria_phage	5.4e-24	96.6
AKK39765.1\|3617899_3618142_-	DUF2560 family protein	A0A0M4R322	Salmonella_phage	7.5e-37	100.0
AKK39766.1\|3618245_3618626_-	hypothetical protein	Q716B1	Shigella_phage	1.4e-66	99.2
AKK39767.2\|3618909_3619428_-	Rha family transcriptional regulator	A0A2D1GLJ3	Escherichia_phage	7.2e-93	99.4
AKK39768.2\|3619630_3619783_-	hypothetical protein	Q716B2	Shigella_phage	6.2e-21	98.0
AKK39769.1\|3619770_3620238_-\|lysis	lysis protein	Q9AZ06	Salmonella_phage	2.8e-72	93.5
AKK39770.1\|3620234_3620711_-	lysozyme	K7PKV2	Enterobacteria_phage	1.7e-88	100.0
AKK39771.1\|3620694_3621018_-\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.3e-52	100.0
AKK39772.1\|3621684_3622308_-	antitermination protein	K7PM87	Enterobacteria_phage	3.0e-114	100.0
AKK39773.1\|3622304_3622493_-	protein ninH	K7PH29	Enterobacteria_phage	1.9e-27	100.0
AKK39774.1\|3622489_3622852_-	RusA family crossover junction endodeoxyribonuclease	A5VW85	Enterobacteria_phage	9.2e-63	100.0
AKK39775.1\|3622848_3623139_-	DUF1364 domain-containing protein	Q9MCN9	Enterobacteria_phage	4.2e-50	97.9
AKK39776.1\|3623138_3623408_-	hypothetical protein	K7PHK7	Enterobacteria_phage	7.1e-44	100.0
AKK39777.1\|3623400_3623577_-	protein ninF	A0A220NRM2	Escherichia_phage	1.9e-26	100.0
AKK39778.2\|3623569_3624520_-	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	8.2e-95	47.0
AKK39779.1\|3624516_3624693_-	NinE family protein	K7PHE6	Enterobacteria_phage	2.7e-28	100.0
AKK39780.1\|3624689_3625217_-	phage N-6-adenine-methyltransferase	Q8H9Z7	Enterobacteria_phage	3.6e-100	99.4
AKK39781.2\|3625213_3625672_-	recombination protein NinB	A0A220NRM1	Escherichia_phage	7.3e-81	100.0
AKK39783.1\|3625727_3627104_-	replicative DNA helicase	A0A0P0ZC27	Stx2-converting_phage	5.7e-254	100.0
AKK39784.2\|3627100_3627988_-	replication protein	A5VW95	Enterobacteria_phage	4.0e-144	91.5
AKK39785.1\|3628050_3628323_-	hypothetical protein	G9L679	Escherichia_phage	2.7e-43	100.0
AKK39786.1\|3628345_3628642_-	hypothetical protein	A5VW96	Enterobacteria_phage	2.1e-44	96.9
AKK39787.1\|3628760_3628961_-	hypothetical protein	A4KWT7	Enterobacteria_phage	4.3e-30	100.0
AKK39788.1\|3629061_3629775_+	LexA family transcriptional regulator	A4KWV9	Enterobacteria_phage	3.5e-130	99.2
AKK39789.2\|3629941_3630760_+	NYN domain-containing protein	A4JWQ6	Burkholderia_virus	3.3e-36	46.2
AKK39790.2\|3631241_3631565_+	antitermination protein	K7P718	Enterobacteria_phage	1.0e-52	100.0
AKK39791.2\|3631557_3632052_-	hypothetical protein	K7P861	Enterobacteria_phage	1.4e-85	99.4
AKK39792.1\|3632308_3632677_+	lambda prophage-derived protein ea10	M1FPD2	Enterobacteria_phage	2.0e-65	100.0
AKK39793.2\|3632752_3632887_+	hypothetical protein	K7PHK2	Enterobacteria_phage	3.1e-16	100.0
AKK39794.1\|3632871_3633024_+	host cell division inhibitory peptide Kil	A5VWA5	Enterobacteria_phage	4.7e-21	100.0
AKK39796.1\|3633108_3633417_+	hypothetical protein	K7PJM4	Enterobacteria_phage	1.1e-53	100.0
AKK39797.1\|3633413_3634325_+	DNA recombinase	K7PKG9	Enterobacteria_phage	2.2e-169	99.7
AKK39798.1\|3634308_3634791_+	hypothetical protein	K7P6T5	Enterobacteria_phage	8.4e-80	99.4
AKK39799.1\|3634802_3635117_+	hypothetical protein	K7PLT4	Enterobacteria_phage	1.2e-50	100.0
AKK39800.1\|3635133_3635301_+	DUF2737 family protein	K7PJY9	Enterobacterial_phage	1.3e-24	100.0
AKK39801.1\|3635297_3635843_+	hypothetical protein	J9Q748	Salmonella_phage	4.9e-84	83.8
AKK39802.1\|3635839_3636139_+	hypothetical protein	A5VWB2	Enterobacteria_phage	5.3e-56	96.0
AXF92067.1\|3636140_3636548_+	ead/Ea22-like family protein	A0A125RPT9	Escherichia_phage	6.3e-68	97.0
AKK39803.1\|3636549_3636741_+	hypothetical protein	A0A2I6TD51	Escherichia_phage	2.1e-26	100.0
AKK39804.1\|3636743_3637394_+	DUF550 domain-containing protein	K7P7E3	Enterobacteria_phage	1.3e-54	57.9
AKK39805.1\|3637555_3637867_+	hypothetical protein	Q9G076	Enterobacteria_phage	1.9e-53	97.1
AKK39806.1\|3637975_3638176_+	transcriptional regulator	K7P7V0	Enterobacteria_phage	2.4e-33	100.0
AXF92202.1\|3638472_3638625_+	hypothetical protein	NA	NA	NA	NA
AKK39808.1\|3638704_3639952_-	MFS transporter	NA	NA	NA	NA
AKK39809.1\|3640023_3640938_-	aminoimidazole riboside kinase	NA	NA	NA	NA
AKK39810.1\|3641153_3642587_+	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	9.1e-29	25.0

DBSCAN-SWA_10

3979924 : 3987064

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKK40111.1\|3979924_3982486_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	7.8e-31	20.7
AKK40112.1\|3982591_3983248_+	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	4.3e-50	46.1
AKK40113.2\|3983298_3984066_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	7.4e-70	57.4
AKK40114.1\|3984261_3985170_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.5e-117	76.5
AKK40115.1\|3985166_3986429_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
AKK40116.1\|3986425_3987064_+	class II aldolase	A0A077SK32	Escherichia_phage	1.8e-82	74.5

DBSCAN-SWA_11

4040994 : 4109757

uncultured_marine_virus(16.67%)

transposase,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKK40168.1\|4040994_4042203_+\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
AKK40170.1\|4043393_4046150_+	signal transduction histidine kinase	A0A1V0SGX0	Hokovirus	6.4e-55	30.6
AKK40171.1\|4046380_4047721_-	glucarate dehydratase	NA	NA	NA	NA
AKK40172.1\|4047741_4049082_-	glucarate dehydratase	NA	NA	NA	NA
AKK40173.1\|4049083_4050436_-	MFS transporter	NA	NA	NA	NA
AKK40174.1\|4050870_4051320_-	flavodoxin	NA	NA	NA	NA
AKK40175.1\|4051337_4052120_-\|tRNA	tRNA pseudouridine(65) synthase TruC	NA	NA	NA	NA
AKK40176.1\|4052119_4052449_-	YqcC family protein	NA	NA	NA	NA
AKK40178.1\|4053070_4053616_-	protein Syd	NA	NA	NA	NA
AKK40179.1\|4053683_4054532_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A2I7SAX1	Vibrio_phage	3.6e-41	37.5
AKK40180.1\|4054643_4056008_+	LOG family protein YgdH	NA	NA	NA	NA
AKK40181.1\|4056563_4057853_+	HAAAP family serine/threonine permease	NA	NA	NA	NA
AKK40182.1\|4057910_4059278_+	L-serine ammonia-lyase	NA	NA	NA	NA
AKK40183.2\|4059388_4060144_+	flap endonuclease Xni	F8WQ40	Bacillus_phage	8.5e-10	33.5
AKK40184.2\|4060198_4061347_-	lactaldehyde reductase	NA	NA	NA	NA
AKK40185.1\|4061374_4062022_-	L-fuculose-phosphate aldolase	NA	NA	NA	NA
AKK40186.1\|4062568_4063885_+	L-fucose:H+ symporter permease	NA	NA	NA	NA
AKK40187.1\|4063917_4065693_+	L-fucose isomerase	NA	NA	NA	NA
AKK40188.2\|4065801_4067220_+	L-fuculokinase	NA	NA	NA	NA
AKK40189.1\|4067221_4067644_+	L-fucose mutarotase	NA	NA	NA	NA
AKK40190.1\|4067701_4068433_+	l-fucose operon activator	NA	NA	NA	NA
AKK40191.1\|4068476_4069577_-	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	NA	NA	NA	NA
AKK40192.1\|4069569_4069965_-	DUF423 domain-containing protein	NA	NA	NA	NA
AKK40193.1\|4069983_4070901_-	glycine cleavage system transcriptional activator	NA	NA	NA	NA
AKK40194.2\|4071251_4071479_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA
AKK40195.1\|4071670_4072876_+	cysteine desulfurase CsdA	Q2XUY6	environmental_halophage	1.7e-73	36.8
AKK40196.1\|4072875_4073319_+	cysteine desulfurase sulfur acceptor subunit CsdE	NA	NA	NA	NA
AKK40197.1\|4073369_4074176_-\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	1.7e-16	33.3
AKK40199.2\|4074602_4075700_-	murein transglycosylase A	NA	NA	NA	NA
AKK40200.2\|4076836_4077337_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AKK40201.2\|4077395_4078934_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AKK40202.1\|4078953_4080291_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AKK40203.1\|4080287_4080953_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
AXF92081.1\|4080965_4082618_+	OmpA family protein	NA	NA	NA	NA
AKK40205.1\|4082675_4083167_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
AKK40206.1\|4083358_4085995_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.6e-98	30.9
AKK40207.1\|4086006_4088487_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.4e-07	38.8
AKK40208.1\|4088519_4089254_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
AKK40209.1\|4089243_4089633_+	hypothetical protein	NA	NA	NA	NA
AKK40210.1\|4089738_4090953_+	hypothetical protein	NA	NA	NA	NA
AKK40211.2\|4091009_4094336_+	type VI secretion protein VasK	NA	NA	NA	NA
AKK40212.2\|4094328_4095939_+	type VI secretion system protein TssA	NA	NA	NA	NA
AKK40213.2\|4095944_4097351_+	PAAR domain-containing protein	NA	NA	NA	NA
AKK40214.1\|4097979_4099740_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AKK40215.1\|4099703_4100783_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AKK40216.1\|4100763_4101300_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AKK40217.1\|4101303_4101732_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AKK40218.1\|4101731_4103108_+	type VI secretion system protein VasL	NA	NA	NA	NA
AKK41790.1\|4103406_4104354_-	phosphoglycerate dehydrogenase	M1I1Q8	Acanthocystis_turfacea_Chlorella_virus	1.4e-14	27.3
AXF92082.1\|4104424_4105021_-	SIS domain-containing protein	A0A2P0VNK5	Tetraselmis_virus	2.4e-23	33.5
AKK40219.1\|4105023_4106199_-	putative C-S lyase	NA	NA	NA	NA
AKK40220.1\|4106198_4107779_-	PTS glucose transporter subunit IIBC	A0A2I7SAJ6	Vibrio_phage	2.0e-05	35.7
AKK40221.1\|4107810_4108476_-	PRD domain-containing protein	NA	NA	NA	NA
AKK40222.1\|4108548_4109757_+\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0

DBSCAN-SWA_12

4332708 : 4341634

Stx2-converting_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AKK40415.2\|4332708_4336206_-	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	7.0e-99	34.9
AKK40418.1\|4338418_4338844_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
AKK40419.1\|4338840_4339191_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	1.2e-40	66.4
AKK40420.1\|4339221_4340814_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.9e-181	63.4
AKK40421.1\|4340909_4341257_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	4.8e-61	99.1
AKK40422.2\|4341253_4341634_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2

DBSCAN-SWA_13

4837166 : 4873260

Escherichia_phage(35.0%)

head,plate,tail,portal,lysis,terminase,holin,integrase,capsid

attL 4837009:4837055|attR 4870472:4870518

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4837009:4837055	attL	NA	NA	NA	NA
AKK40857.1\|4837166_4837421_-	DNA-binding transcriptional regulator	M1SNR2	Escherichia_phage	1.3e-44	100.0
AKK40858.1\|4837466_4838630_-	phage late control D family protein	U5N3V4	Enterobacteria_phage	2.0e-204	99.0
AKK40859.1\|4838629_4839109_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	3.3e-84	99.4
AKK40860.1\|4839123_4841571_-\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	0.0e+00	95.3
AKK40861.2\|4841563_4841683_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
AKK40862.1\|4841715_4841991_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
AKK40863.1\|4842047_4842566_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	3.2e-93	99.4
AKK40864.1\|4842578_4843769_-\|tail	phage tail protein	A0A0F7LBW9	Escherichia_phage	1.8e-224	99.5
AKK40865.1\|4844027_4845371_-	hypothetical protein	NA	NA	NA	NA
AKK40866.1\|4845652_4846180_-\|tail	tail assembly chaperone	U5N0T1	Enterobacteria_phage	6.4e-89	93.7
AKK40867.1\|4846183_4848433_-\|tail	phage tail protein	U5N099	Enterobacteria_phage	2.1e-136	55.7
AKK40868.1\|4848443_4848974_-\|tail	phage tail protein I	U5N0U8	Enterobacteria_phage	2.3e-102	100.0
AKK40869.1\|4848966_4849875_-\|plate	baseplate assembly protein	A0A0F7LCJ3	Escherichia_phage	3.4e-162	99.3
AKK40870.1\|4849879_4850227_-\|plate	baseplate assembly protein	A0A0F7L9X3	Escherichia_phage	1.7e-58	100.0
AKK40871.1\|4850223_4850859_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	2.9e-112	98.1
AKK40872.1\|4850942_4851728_+	hypothetical protein	NA	NA	NA	NA
AKK40873.1\|4851799_4852252_-	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	2.4e-76	99.3
AKK40874.1\|4852244_4852712_-\|tail	phage tail protein	Q7Y4E0	Escherichia_virus	3.0e-82	100.0
AKK40875.2\|4852674_4852848_-\|lysis	phage lysis protein	Q7Y4E1	Escherichia_virus	2.3e-24	96.5
AKK40876.1\|4852819_4853245_-\|lysis	LysB family phage lysis regulatory protein	Q7Y4E2	Escherichia_virus	1.6e-66	96.5
AKK40877.1\|4853232_4853658_-	protein lysA	U5N096	Enterobacteria_phage	7.2e-59	96.5
AKK40878.1\|4853672_4854170_-	lysozyme	A0A0F7LBS0	Escherichia_phage	1.2e-92	99.4
AKK40879.1\|4854169_4854451_-\|holin	holin	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
AKK40880.1\|4854454_4854658_-\|tail	phage tail protein	U5N3E7	Enterobacteria_phage	4.0e-31	100.0
AKK40881.2\|4854657_4855167_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
AKK40882.1\|4855266_4856010_-\|terminase	terminase	Q94MH3	Enterobacteria_phage	1.4e-121	99.2
AKK40883.1\|4856013_4857087_-\|capsid	phage major capsid protein, P2 family	Q83VT1	Escherichia_phage	1.9e-201	99.7
AKK40884.1\|4857145_4858000_-\|capsid	capsid scaffolding protein	Q94MB7	Escherichia_virus	1.7e-139	89.4
AKK40885.1\|4858173_4859946_+	oxidoreductase	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.8
AKK40886.1\|4859945_4860980_+\|portal	phage portal protein	Q858W8	Yersinia_virus	1.2e-200	99.1
AKK40887.1\|4861411_4863370_+	ATP-binding protein	NA	NA	NA	NA
AKK40888.2\|4863410_4864460_-	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	7.4e-105	56.2
AKK40889.1\|4864571_4866842_-	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	97.2
AKK40890.1\|4866831_4867107_-	hypothetical protein	S4TP00	Salmonella_phage	8.6e-45	98.9
AKK40891.1\|4867103_4867328_-	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	2.9e-35	100.0
AKK40892.1\|4867330_4867630_-	hypothetical protein	S4TUD1	Salmonella_phage	3.2e-45	99.0
AKK40893.2\|4867629_4867854_-	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
AKK40894.1\|4867917_4868418_-	replication protein B	A0A0F7LBQ6	Escherichia_phage	4.5e-92	100.0
AKK40896.1\|4868587_4868860_-	hypothetical protein	Q1JS44	Enterobacteria_phage	1.5e-46	100.0
AKK40897.1\|4869012_4869306_+	helix-turn-helix domain-containing protein	Q1JS45	Enterobacteria_phage	1.0e-48	100.0
AKK40898.1\|4869375_4870356_+\|integrase	integrase	U5N0A8	Enterobacteria_phage	4.7e-186	100.0
AKK40899.2\|4870541_4871042_-	periplasmic protein CpxP	NA	NA	NA	NA
4870472:4870518	attR	NA	NA	NA	NA
AKK40900.1\|4871191_4871890_+	DNA-binding transcriptional regulator CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
AKK40901.1\|4871886_4873260_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	3.8e-16	25.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP030791

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5197 : 69012

Shigella_phage(11.76%)

transposase,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXF92226.1\|5197_6151_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
AXF92227.1\|6254_6644_+	GlcNAc transferase	NA	NA	NA	NA
AXF92228.1\|7422_7839_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.3e-16	33.6
AXF92229.1\|9553_10741_+	efflux RND transporter periplasmic adaptor subunit	A0A140XAI1	Dickeya_phage	6.0e-10	55.7
AXF92230.1\|10737_12678_+	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	1.8e-35	39.0
AXF92231.1\|12681_14052_+	TolC family protein	NA	NA	NA	NA
AXF92382.1\|16447_17224_+	hypothetical protein	NA	NA	NA	NA
AXF92232.1\|17225_19490_+	DNA helicase UvrD	NA	NA	NA	NA
AXF92233.1\|21831_22203_-	hypothetical protein	NA	NA	NA	NA
AXF92234.1\|22245_22713_-	hypothetical protein	NA	NA	NA	NA
AXF92235.1\|22712_22982_-	hypothetical protein	NA	NA	NA	NA
AXF92236.1\|25245_26439_-	cobalamin biosynthesis protein CobW	NA	NA	NA	NA
AXF92237.1\|26893_28122_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	3.7e-172	97.0
AXF92238.1\|28828_29122_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
AXF92239.1\|29636_29819_-	hypothetical protein	NA	NA	NA	NA
AXF92383.1\|31804_32068_+	hypothetical protein	NA	NA	NA	NA
AXF92240.1\|32266_33382_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA
AXF92241.1\|33395_37181_+	salmochelin/enterobactin export ABC transporter IroC	W8CYL7	Bacillus_phage	1.3e-45	30.0
AXF92242.1\|37284_38514_+	catecholate siderophore esterase IroD	NA	NA	NA	NA
AXF92243.1\|38598_39555_+	catecholate siderophore esterase IroE	NA	NA	NA	NA
AXF92244.1\|39599_41777_-	siderophore salmochelin receptor IroN	A0A0P0I887	Acinetobacter_phage	9.6e-06	31.8
AXF92245.1\|42064_42292_+	hypothetical protein	NA	NA	NA	NA
AXF92246.1\|42515_42701_-	phospho-2-dehydro-3-deoxyheptonate aldolase	NA	NA	NA	NA
AXF92247.1\|42621_43656_-	3-deoxy-7-phosphoheptulonate synthase	A0A0B6VT43	Edwardsiella_phage	1.1e-73	42.6
AXF92248.1\|43673_43865_-	hypothetical protein	NA	NA	NA	NA
AXF92249.1\|44215_44524_-	hypothetical protein	NA	NA	NA	NA
AXF92250.1\|44622_44805_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AXF92251.1\|44801_44999_-	toxin-antitoxin system protein	NA	NA	NA	NA
AXF92384.1\|45713_46955_+	colicin V secretion protein CvaA	NA	NA	NA	NA
AXF92252.1\|46929_49044_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	3.6e-34	26.5
AXF92253.1\|49213_49525_-	colicin V	NA	NA	NA	NA
AXF92254.1\|49620_49827_+	hypothetical protein	NA	NA	NA	NA
AXF92255.1\|50678_50948_+	hypothetical protein	NA	NA	NA	NA
AXF92256.1\|50944_51925_+	FAD-binding protein	A0A2H4J2Q2	uncultured_Caudovirales_phage	3.3e-06	41.5
AXF92385.1\|52000_52381_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
AXF92257.1\|52377_52725_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
AXF92258.1\|59673_60042_+\|transposase	transposase	Q716C1	Shigella_phage	1.9e-39	98.9
AXF92259.1\|59998_61150_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	3.4e-42	35.6
AXF92260.1\|61271_61637_+\|transposase	transposase	NA	NA	NA	NA
AXF92261.1\|62103_63114_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	1.1e-20	28.8
AXF92262.1\|63691_64282_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	6.2e-24	38.3
AXF92263.1\|64636_65635_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AXF92264.1\|65634_66672_+	iron ABC transporter permease	NA	NA	NA	NA
AXF92265.1\|66671_67433_+	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	8.8e-15	30.2
AXF92266.1\|67444_68677_+	MFS transporter	NA	NA	NA	NA
AXF92267.1\|68754_69012_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP006834

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP030791

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection