CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT985476	Listeria monocytogenes isolate LMNC088 complete genome chromosome 1	2 crisprs	DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csa3	3	21	6	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT985476_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT985476_1

546480-546960

Unclear

I-A

Consensus_repeat	Method
GTTTTAGTTACTTATTGTGAAATGTAAAT	CRT
TTTTAGTTACTTATTGTGAAATGTAAAT	CRISPRCasFinder
TATAAGTTTTAGTTACTTATTGTGAAATGTAAATTTT	PILER-CR
TGTTTTAGTTACTTATTGTGAAATGTAAAT	PILER-CR

7 spacers

cas6,cas8b2

The CRISPR arrays of NZ_LT985476_1

>merge|NZ_LT985476|1|546480-546960|CRT,CRISPRCasFinder,PILER-CR,PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAATTAAAAAGGTTTATTGTTATCACCAGCTTTCATTAAGTTTTAGTTACTTATTGTGAAATGTAAATTTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAAGTTTTAGTTACTTATTGTGAAATGTAAATTTTTCTACTCCTGCTTCTAAAATGTCGTTTATAAGTTTTAGTTACTTATTGTGAAATGTAAATCTAAAACATCCTTCACTGTATCAACTCCTTTCTATATTTTAGTTACTTATTGTGAAATGTAAATAAAATAGGAGGAAATAAATTATGACTATCAAATTAAGTTTTAGTTACTTATTGTGAAATGTAAATCAACTTGAAACCTAGTCTGATAACATAATCAACAATGTTTTAGTTACTTATTGTGAAATGTAAATACAATAATAGGATATTTTGGATTTGTCTGCGTTCCTGTTTTAGTTACTTATTATGAAATGTAAAT

>NZ_LT985476|1|1|546480-546960|CRT
GTTTTAGTTACTTATTGTGAAATGTAAAT	TAAAAAGGTTTATTGTTATCACCAGCTTTCATTAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT
ATTTTAGTTACTTATTGTGAAATGTAAAT	AAAATAGGAGGAAATAAATTATGACTATCAAATTAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	CAACTTGAAACCTAGTCTGATAACATAATCAACAAT
GTTTTAGTTACTTATTGTGAAATGTAAAT	ACAATAATAGGATATTTTGGATTTGTCTGCGTTCCT
GTTTTAGTTACTTATTATGAAATGTAAAT

>NZ_LT985476|1|1|546481-546960|CRISPRCasFinder
TTTTAGTTACTTATTGTGAAATGTAAAT	TAAAAAGGTTTATTGTTATCACCAGCTTTCATTAAG
TTTTAGTTACTTATTGTGAAATGTAAAT	TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAAG
TTTTAGTTACTTATTGTGAAATGTAAAT	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAAG
TTTTAGTTACTTATTGTGAAATGTAAAT	CTAAAACATCCTTCACTGTATCAACTCCTTTCTATA
TTTTAGTTACTTATTGTGAAATGTAAAT	AAAATAGGAGGAAATAAATTATGACTATCAAATTAAG
TTTTAGTTACTTATTGTGAAATGTAAAT	CAACTTGAAACCTAGTCTGATAACATAATCAACAATG
TTTTAGTTACTTATTGTGAAATGTAAAT	ACAATAATAGGATATTTTGGATTTGTCTGCGTTCCTG
TTTTAGTTACTTATTATGAAATGTAAAT

>NZ_LT985476|1|1|546540-546701|PILER-CR
TTAAGTTTTAGTTACTTATTGTGAAATGTAAATTTTATTTCTCCT	ACGCTTTTCTTATTTCTGTAA
ATAAGTTTTAGTTACTTATTGTGAAATGTAAATTTTTCTACTCCT	GCTTCTAAAATGTCGTTTATAAGTTT
TAGTTACTTATTGTGAAATGTAAATCTAAAACATCCTTCACTGTATCAACTCCTTTCTATATTTTAGTTACTTATTGTGAAATGTAAATAAAATAGGAGGAAATAAATTATGACTATCAAATTAAGTTTTAGTTACTTATTGTGAAATGTAAATC	AACTTGAAACCTAGTCTGATAACATAATCAACAAT
GTTTTAGTTACTTATTGTGAAATGTAAATA	CAATAATAGGATATTTTGGATTTGTCTGCGTTCCT


>NZ_LT985476|1|2|546802-546960|PILER-CR
	ACGCTTTTCTTATTTCTGTAA
ATAAGTTTTAGTTACTTATTGTGAAATGTAAATTTTTCTACTCCT	GCTTCTAAAATGTCGTTTATAAGTTT
TAGTTACTTATTGTGAAATGTAAATCTAAAACATCCTTCACTGTATCAACTCCTTTCTATATTTTAGTTACTTATTGTGAAATGTAAATAAAATAGGAGGAAATAAATTATGACTATCAAATTAAGTTTTAGTTACTTATTGTGAAATGTAAATC	AACTTGAAACCTAGTCTGATAACATAATCAACAAT
GTTTTAGTTACTTATTGTGAAATGTAAATA	CAATAATAGGATATTTTGGATTTGTCTGCGTTCCT
GTTTTAGTTACTTATTATGAAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT985476.1\|WP_003733192.1\|540356_540959_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
NZ_LT985476.1\|WP_003721293.1\|543588_543882_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_LT985476.1\|WP_009930754.1\|547351_547930_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT985476.1\|WP_003721295.1\|545307_546243_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_LT985476.1\|WP_061110904.1\|555819_557508_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NZ_LT985476.1\|WP_061110903.1\|555081_555804_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_LT985476.1\|WP_039175714.1\|552362_553793_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_LT985476.1\|WP_003721292.1\|542526_543573_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_LT985476.1\|WP_003733191.1\|540986_541454_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_LT985476.1\|WP_061110902.1\|549948_551784_+\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NZ_LT985476.1\|WP_003721286.1\|537533_538184_+\|transaldolase	unknown	unknown	gnl\|CDD\|223254
NZ_LT985476.1\|WP_010989499.1\|548037_548718_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_LT985476.1\|WP_003721287.1\|538292_540353_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_LT985476.1\|WP_003721303.1\|553913_554729_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_LT985476.1\|WP_003721294.1\|543896_545168_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_LT985476.1\|WP_003721301.1\|551884_552316_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_LT985476.1\|WP_003721290.1\|541470_541869_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT985476.1\|WP_003721298.1\|548742_549102_-\|Lin0512-family-protein	unknown	unknown	gnl\|CDD\|131113
NZ_LT985476.1\|WP_003721291.1\|541879_542530_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_LT985476.1\|WP_009932856.1\|549108_549567_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956

Protein	Function_ID	Function_description	E-value
NZ_LT985476.1\|WP_003733192.1\|540356_540959_+\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	1.15952e-75
NZ_LT985476.1\|WP_003721293.1\|543588_543882_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
NZ_LT985476.1\|WP_061110904.1\|555819_557508_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	6.06959e-26
NZ_LT985476.1\|WP_003721295.1\|545307_546243_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	2.38027e-153
NZ_LT985476.1\|WP_061110903.1\|555081_555804_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.87822e-32
NZ_LT985476.1\|WP_039175714.1\|552362_553793_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	4.84493e-100
NZ_LT985476.1\|WP_003721292.1\|542526_543573_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
NZ_LT985476.1\|WP_003733191.1\|540986_541454_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	2.76446e-37
NZ_LT985476.1\|WP_061110902.1\|549948_551784_+\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	1.97521e-119
NZ_LT985476.1\|WP_003721286.1\|537533_538184_+\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	1.40072e-62
NZ_LT985476.1\|WP_003721298.1\|548742_549102_-\|Lin0512-family-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	5.62162e-67
NZ_LT985476.1\|WP_003721287.1\|538292_540353_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	2.1337e-80
NZ_LT985476.1\|WP_003721303.1\|553913_554729_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NZ_LT985476.1\|WP_003721294.1\|543896_545168_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
NZ_LT985476.1\|WP_003721301.1\|551884_552316_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NZ_LT985476.1\|WP_010989499.1\|548037_548718_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	9.06055e-60
NZ_LT985476.1\|WP_003721291.1\|541879_542530_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	4.74405e-108
NZ_LT985476.1\|WP_009932856.1\|549108_549567_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	9.15558e-13

>NZ_LT985476.1|WP_003721295.1|545307_546243_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSSIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NZ_LT985476.1|WP_003721294.1|543896_545168_+|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>NZ_LT985476.1|WP_003721293.1|543588_543882_+|PTS-sugar-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>NZ_LT985476.1|WP_003721292.1|542526_543573_+|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>NZ_LT985476.1|WP_003721291.1|541879_542530_+|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
>NZ_LT985476.1|WP_003721290.1|541470_541869_+|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>NZ_LT985476.1|WP_003733191.1|540986_541454_+|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQNKEKLLAEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>NZ_LT985476.1|WP_003733192.1|540356_540959_+|SIS-domain-containing-protein
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>NZ_LT985476.1|WP_003721287.1|538292_540353_+|BglG-family-transcription-antiterminator
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADINDSNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>NZ_LT985476.1|WP_003721286.1|537533_538184_+|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPSILVKEKCNRQTAINRILELTDKQVFVQTVGFTYEEILADARMLLTMFGKDKIAIKIPAHEAGTNVIDTLKKEDKTIQILGTAIYSADQAITAALAGADFVAPYVNRMSAANIDPFKEISQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK
>NZ_LT985476.1|WP_009930754.1|547351_547930_+|hypothetical-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTITIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>NZ_LT985476.1|WP_010989499.1|548037_548718_+|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLFFPKSLNVFHWHQDTFALPTGSTRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
>NZ_LT985476.1|WP_003721298.1|548742_549102_-|Lin0512-family-protein
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>NZ_LT985476.1|WP_009932856.1|549108_549567_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTSAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NZ_LT985476.1|WP_061110902.1|549948_551784_+|lmo0514-family-class-1-internalin
MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSSRLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDATSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVDPVPPTPEIKPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>NZ_LT985476.1|WP_003721301.1|551884_552316_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_LT985476.1|WP_039175714.1|552362_553793_-|CapA-family-protein
MKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNADAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_LT985476.1|WP_003721303.1|553913_554729_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_LT985476.1|WP_061110903.1|555081_555804_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIIPKDFQSKVVSLFKAGIMKSSPERYDNLFGGNKHKQYTFSVYLPKPQNKVAEIQLNEANCIINFSTGDAETGIIFYNALMCLRGSKVLFGAGNHITVKNIQIVPEKKIIGKRTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLMDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGIGTMTGSGFGMIEQF
>NZ_LT985476.1|WP_061110904.1|555819_557508_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MQTEIEVRADDWLINTGLTGFLNIVGKENVRIDGQSIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKGNYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQIDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLFKQTKFIDPYLDYKTTFVDPVLEYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK

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Crispr_ID: NZ_LT985476_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT985476_2

562157-563481

Unclear

I-A

Consensus_repeat	Method
GTTTTAACTACTTATTATGAAATGTAAAT	PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	CRT

20 spacers

cas2,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NZ_LT985476_2

>merge|NZ_LT985476|2|562157-563481|PILER-CR,CRISPRCasFinder,CRT
GTTTTAACTACTTATTATGAAATGTAAATTTCATTACAATACGGATAATATTCATGTTCATATTGGTTTTAACTACTTATTATGAAATGTAAATTCGCTTGTGTATAAACACAAGTCTACCGCAACACCGTTTTAACTACTTATTATGAAATGTAAATTAACTTAAATAAGCATAAGGAAATGCCGCGCATGGTTTTAACTACTTATTATGAAATGTAAATGAAGGATAAAATATTTTAAGAGTAGGTGAACTCCTGTTTTAACTACTTATTATGAAATGTAAATCTATTTTTATACGTTTTAAAATGCCAGTTATCAGTGTTTTAACTACTTATTATGAAATGTAAATTTGCTTCCCAACGAGCTAAATTTGCGTTAAATCGGGTTTTAACTACTTATTATGAAATGTAAATCTCACTTCCACCACCTCGCATTCTGTGTTTGTTTCGTTTTAACTACTTATTATGAAATGTAAATCATGGGATAAAGAAATCATCATTGCTCCCCCACGCATGTTTTAACTACTTATTATGAAATGTAAATAAATAATATTCGAAGGCAACAAACTAAATCTTTTTAGTTTTAACTACTTATTATGAAATGTAAATTCGTTTGCAAATGAATCGCTCTTCTGGCTCGTATCCGTTTTAACTACTTATTATGAAATGTAAATCGGGGAATATCTCTTTAAAGCTTAAATACGAATGCGTTTTAACTACTTATTATGAAATGTAAATTTATCAAAAACTTCAGCTAAGGTTGCGGGTAGTAATTGTTTTAACTACTTATTATGAAATGTAAATTCAACAAGCGAACCACTAACGCCCGGAGCGTCTAAAGTTTTAACTACTTATTATGAAATGTAAATCCGGAAAATTGTGATTTAATGATTAGCAATCCACCGTTTTAACTACTTATTATGAAATGTAAATAGAAGTGGAATACGTTGGAGTGGTTAAATATGACACGGTTTTAACTACTTATTATGAAATGTAAATATTTAAGTATTAATGTTTTTAAAAAGTCTGATTTATGTTTTAACTACTTATTATGAAATGTAAATAGTCCCATATCGTGATAGTATGCTACGCGATCAAATTCGTTTTAACTACTTATTATGAAATGTAAATCAAGTAACAGGAAAAGGACAAGTATATCTATTAAAGTTTTAACTACTTATTATGAAATGTAAATTACAACATGAGCTGGCTATTCTCTTCTGCTGAAACAGGTTTTAACTACTTATTATGAAATGTAAATCCTAATACACCTAAACTACTCTTATATATAAAAACAGTTTTAACTACTTATTATGAAATCATAAA

>NZ_LT985476|2|3|562157-563416|PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	TTCATTACAATACGGATAATATTCATGTTCATATTG
GTTTTAACTACTTATTATGAAATGTAAAT	TCGCTTGTGTATAAACACAAGTCTACCGCAACACC
GTTTTAACTACTTATTATGAAATGTAAAT	TAACTTAAATAAGCATAAGGAAATGCCGCGCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GAAGGATAAAATATTTTAAGAGTAGGTGAACTCCT
GTTTTAACTACTTATTATGAAATGTAAAT	CTATTTTTATACGTTTTAAAATGCCAGTTATCAGT
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCTTCCCAACGAGCTAAATTTGCGTTAAATCGG
GTTTTAACTACTTATTATGAAATGTAAAT	CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	CATGGGATAAAGAAATCATCATTGCTCCCCCACGCAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAATAATATTCGAAGGCAACAAACTAAATCTTTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TCGTTTGCAAATGAATCGCTCTTCTGGCTCGTATCC
GTTTTAACTACTTATTATGAAATGTAAAT	CGGGGAATATCTCTTTAAAGCTTAAATACGAATGC
GTTTTAACTACTTATTATGAAATGTAAAT	TTATCAAAAACTTCAGCTAAGGTTGCGGGTAGTAATT
GTTTTAACTACTTATTATGAAATGTAAAT	TCAACAAGCGAACCACTAACGCCCGGAGCGTCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	CCGGAAAATTGTGATTTAATGATTAGCAATCCACC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGTGGAATACGTTGGAGTGGTTAAATATGACACG
GTTTTAACTACTTATTATGAAATGTAAAT	ATTTAAGTATTAATGTTTTTAAAAAGTCTGATTTAT
GTTTTAACTACTTATTATGAAATGTAAAT	AGTCCCATATCGTGATAGTATGCTACGCGATCAAATTC
GTTTTAACTACTTATTATGAAATGTAAAT	CAAGTAACAGGAAAAGGACAAGTATATCTATTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	TACAACATGAGCTGGCTATTCTCTTCTGCTGAAACAG
GTTTTAACTACTTATTATGAAATGTAAAT

>NZ_LT985476|2|2|562157-563481|CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	TTCATTACAATACGGATAATATTCATGTTCATATTG
GTTTTAACTACTTATTATGAAATGTAAAT	TCGCTTGTGTATAAACACAAGTCTACCGCAACACC
GTTTTAACTACTTATTATGAAATGTAAAT	TAACTTAAATAAGCATAAGGAAATGCCGCGCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GAAGGATAAAATATTTTAAGAGTAGGTGAACTCCT
GTTTTAACTACTTATTATGAAATGTAAAT	CTATTTTTATACGTTTTAAAATGCCAGTTATCAGT
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCTTCCCAACGAGCTAAATTTGCGTTAAATCGG
GTTTTAACTACTTATTATGAAATGTAAAT	CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	CATGGGATAAAGAAATCATCATTGCTCCCCCACGCAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAATAATATTCGAAGGCAACAAACTAAATCTTTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TCGTTTGCAAATGAATCGCTCTTCTGGCTCGTATCC
GTTTTAACTACTTATTATGAAATGTAAAT	CGGGGAATATCTCTTTAAAGCTTAAATACGAATGC
GTTTTAACTACTTATTATGAAATGTAAAT	TTATCAAAAACTTCAGCTAAGGTTGCGGGTAGTAATT
GTTTTAACTACTTATTATGAAATGTAAAT	TCAACAAGCGAACCACTAACGCCCGGAGCGTCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	CCGGAAAATTGTGATTTAATGATTAGCAATCCACC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGTGGAATACGTTGGAGTGGTTAAATATGACACG
GTTTTAACTACTTATTATGAAATGTAAAT	ATTTAAGTATTAATGTTTTTAAAAAGTCTGATTTAT
GTTTTAACTACTTATTATGAAATGTAAAT	AGTCCCATATCGTGATAGTATGCTACGCGATCAAATTC
GTTTTAACTACTTATTATGAAATGTAAAT	CAAGTAACAGGAAAAGGACAAGTATATCTATTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	TACAACATGAGCTGGCTATTCTCTTCTGCTGAAACAG
GTTTTAACTACTTATTATGAAATGTAAAT	CCTAATACACCTAAACTACTCTTATATATAAAAACA
GTTTTAACTACTTATTATGAAATCATAAA

>NZ_LT985476|2|2|562157-563481|CRT
GTTTTAACTACTTATTATGAAATGTAAAT	TTCATTACAATACGGATAATATTCATGTTCATATTG
GTTTTAACTACTTATTATGAAATGTAAAT	TCGCTTGTGTATAAACACAAGTCTACCGCAACACC
GTTTTAACTACTTATTATGAAATGTAAAT	TAACTTAAATAAGCATAAGGAAATGCCGCGCATG
GTTTTAACTACTTATTATGAAATGTAAAT	GAAGGATAAAATATTTTAAGAGTAGGTGAACTCCT
GTTTTAACTACTTATTATGAAATGTAAAT	CTATTTTTATACGTTTTAAAATGCCAGTTATCAGT
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCTTCCCAACGAGCTAAATTTGCGTTAAATCGG
GTTTTAACTACTTATTATGAAATGTAAAT	CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	CATGGGATAAAGAAATCATCATTGCTCCCCCACGCAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAATAATATTCGAAGGCAACAAACTAAATCTTTTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TCGTTTGCAAATGAATCGCTCTTCTGGCTCGTATCC
GTTTTAACTACTTATTATGAAATGTAAAT	CGGGGAATATCTCTTTAAAGCTTAAATACGAATGC
GTTTTAACTACTTATTATGAAATGTAAAT	TTATCAAAAACTTCAGCTAAGGTTGCGGGTAGTAATT
GTTTTAACTACTTATTATGAAATGTAAAT	TCAACAAGCGAACCACTAACGCCCGGAGCGTCTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	CCGGAAAATTGTGATTTAATGATTAGCAATCCACC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGTGGAATACGTTGGAGTGGTTAAATATGACACG
GTTTTAACTACTTATTATGAAATGTAAAT	ATTTAAGTATTAATGTTTTTAAAAAGTCTGATTTAT
GTTTTAACTACTTATTATGAAATGTAAAT	AGTCCCATATCGTGATAGTATGCTACGCGATCAAATTC
GTTTTAACTACTTATTATGAAATGTAAAT	CAAGTAACAGGAAAAGGACAAGTATATCTATTAAA
GTTTTAACTACTTATTATGAAATGTAAAT	TACAACATGAGCTGGCTATTCTCTTCTGCTGAAACAG
GTTTTAACTACTTATTATGAAATGTAAAT	CCTAATACACCTAAACTACTCTTATATATAAAAACA
GTTTTAACTACTTATTATGAAATCATAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT985476.1\|WP_061110906.1\|559194_561417_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_LT985476.1\|WP_031665225.1\|573779_575255_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT985476.1\|WP_003721306.1\|557497_558367_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NZ_LT985476.1\|WP_014600555.1\|569026_569470_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT985476.1\|WP_014600556.1\|571432_572764_+\|DUF1254-domain-containing-protein	unknown	unknown	gnl\|CDD\|227659
NZ_LT985476.1\|WP_061110908.1\|568167_568920_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_LT985476.1\|WP_003721311.1\|563553_563922_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NZ_LT985476.1\|WP_061110905.1\|558344_559127_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NZ_LT985476.1\|WP_061110904.1\|555819_557508_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NZ_LT985476.1\|WP_003721320.1\|572809_573550_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_LT985476.1\|WP_061110902.1\|549948_551784_+\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NZ_LT985476.1\|WP_061110903.1\|555081_555804_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_LT985476.1\|WP_003721303.1\|553913_554729_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_LT985476.1\|WP_014931196.1\|565614_566619_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_LT985476.1\|WP_039175718.1\|561680_561959_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_LT985476.1\|WP_003721301.1\|551884_552316_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_LT985476.1\|WP_105179998.1\|564068_565484_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_LT985476.1\|WP_026749764.1\|566650_567967_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NZ_LT985476.1\|WP_039175714.1\|552362_553793_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_LT985476.1\|WP_061110909.1\|569515_571177_-\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732

Protein	Function_ID	Function_description	E-value
NZ_LT985476.1\|WP_061110906.1\|559194_561417_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.49047e-60
NZ_LT985476.1\|WP_003721306.1\|557497_558367_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.33672e-55
NZ_LT985476.1\|WP_014600556.1\|571432_572764_+\|DUF1254-domain-containing-protein	gnl\|CDD\|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	3.61206e-72
NZ_LT985476.1\|WP_061110908.1\|568167_568920_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.2897e-63
NZ_LT985476.1\|WP_003721311.1\|563553_563922_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	1.10012e-41
NZ_LT985476.1\|WP_061110905.1\|558344_559127_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	9.24359e-23
NZ_LT985476.1\|WP_061110904.1\|555819_557508_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	6.06959e-26
NZ_LT985476.1\|WP_003721320.1\|572809_573550_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	2.56491e-51
NZ_LT985476.1\|WP_061110902.1\|549948_551784_+\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	1.97521e-119
NZ_LT985476.1\|WP_061110903.1\|555081_555804_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.87822e-32
NZ_LT985476.1\|WP_003721303.1\|553913_554729_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NZ_LT985476.1\|WP_014931196.1\|565614_566619_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.06536e-20
NZ_LT985476.1\|WP_039175718.1\|561680_561959_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.22425e-27
NZ_LT985476.1\|WP_003721301.1\|551884_552316_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NZ_LT985476.1\|WP_105179998.1\|564068_565484_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.7068e-79
NZ_LT985476.1\|WP_026749764.1\|566650_567967_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_LT985476.1\|WP_039175714.1\|552362_553793_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	4.84493e-100
NZ_LT985476.1\|WP_061110909.1\|569515_571177_-\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	7.11104e-147

>NZ_LT985476.1|WP_039175718.1|561680_561959_+|CRISPR-associated-endonuclease-Cas2
MYVNLIYDISIENGGAKVWRNVFKICKKYLTHVQKSVFEGEITPVLLVKLRMELDKYIRDDKDSVIVFSSRQQRWLEKEFWGLTYEKTSNFF
>NZ_LT985476.1|WP_061110906.1|559194_561417_+|CRISPR-associated-helicase/endonuclease-Cas3
MHKYLAKSNPEETIQEHTDNLLKNYQRLKKLYSAVEIDWYLLELVCLLHDLGKMNLLFQTKLGNASGKGKEIPHGYLSVAFVPDSKLEEMGYSEDEIKVVYQAIARHHERKYDFSDSEWKKEIIKLEEQWAGFIYSQLGENAEYSSEVEMLYFYPGSRIFEGNSAADAETFKKYVLLKGLLNRIDFAASGGIDVELENDFLMDSMEVQLGHFKAENPEADWNALQKYMMQHQNENIVVIAETGMGKTEAGLLWLGNNKGFFTLPLRAAINAIYERITKNIVTTNQAERVGLLHSETYSQYLLHEGNAEMDIDEYYTRTRQMSLPITICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLILGLSYIDKFGGKFCIMTATLPGIVTDLLLENGVDFVQPEDKFVSSRIRHSMEMVHTEIESEFIKPFFNNNRILVICNTISKAKKIYSELKEHFQGEEIHLIHSQFIKKDRSAKEDAIFKDGQKDSTKKCIWVATQVVEASLDIDFDLLFTELSDVNGLFQRMGRCYRNRALDVDTNVYVFDGGAKVCSGIGTFIDKLIFENSKTILNEHAGVLTEEKKMELVERVYSTEALRGSEFYNDLRKTINYVKAFDSYELDKADVRRRFRNINSVSVIPEEVWQDNAEEINSYFVTLRKTSKEISTKEKMIARTNLAEFMVSIPDYLYKKGESVVREINRYESVIEFKCGYSSDVGVFMRGVLYNRDFQTSNC
>NZ_LT985476.1|WP_061110905.1|558344_559127_+|type-I-B-CRISPR-associated-protein-Cas5
MLIMKAIRVRLWQDLVNFKKPTSFQLKETYPLPPYSTVIGMVHTLCGFTSYHEMKISIQGKYFSKVNDLATRYEFKNGMTYDASRHQIKVDKYGVSRGVSTFELLVDLELLLHIIPEDPSLVPIIEKAFREPIEFPSLGRREDIATIQKVEVVDVEKRQPKKSTEISDGYNAYVPISLTENNSVHFKSHESSVGRDKLLGTRYLLTEKYERVNHGTEKAPKFFRKWRKKDVIYSSRIFVSKKDVFFFDEDDYLVFIEEEE
>NZ_LT985476.1|WP_003721306.1|557497_558367_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIIFQAESANYGESLGNISSLKKISRNNGDQYTYISRQAIRYNLMDQIGEKEAPVKAEGGGDKKVIQFLSEATITDFPELDFFGYLKTEKGSGGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKLNENMNIAQAEIHKSYYRYTITIDLDQIGIDGEIALDNKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNIVDVADNNIVIKNIKDLLTYEDIKENTRVGIIDGQFANSDEVKVELKAESVPAFFNDIKGKIDAYYESN
>NZ_LT985476.1|WP_061110904.1|555819_557508_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MQTEIEVRADDWLINTGLTGFLNIVGKENVRIDGQSIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKGNYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQIDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLFKQTKFIDPYLDYKTTFVDPVLEYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK
>NZ_LT985476.1|WP_061110903.1|555081_555804_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIIPKDFQSKVVSLFKAGIMKSSPERYDNLFGGNKHKQYTFSVYLPKPQNKVAEIQLNEANCIINFSTGDAETGIIFYNALMCLRGSKVLFGAGNHITVKNIQIVPEKKIIGKRTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLMDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGIGTMTGSGFGMIEQF
>NZ_LT985476.1|WP_003721303.1|553913_554729_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_LT985476.1|WP_039175714.1|552362_553793_-|CapA-family-protein
MKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNADAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_LT985476.1|WP_003721301.1|551884_552316_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_LT985476.1|WP_061110902.1|549948_551784_+|lmo0514-family-class-1-internalin
MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSSRLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDATSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVDPVPPTPEIKPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>NZ_LT985476.1|WP_003721311.1|563553_563922_-|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGMAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVVVLLV
>NZ_LT985476.1|WP_105179998.1|564068_565484_+|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGIALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMLPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK
>NZ_LT985476.1|WP_014931196.1|565614_566619_+|ROK-family-transcriptional-regulator
MAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKLIRDLVENEEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLLGEPEFVEDMSGEDLDITALKRNTKDIICAFPKISCVVIGVPGIEIGGKLRAMDFPLLLNVQLRETLEAEVNLPVLVETDTNAAILGYKNRPVKEENIVGLYYPERFPPGAGLLMNGEILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMVLLTMSFYDPETIVLYTNFYFGQKDFTEELTEELKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI
>NZ_LT985476.1|WP_026749764.1|566650_567967_-|6-phospho-beta-glucosidase
MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAGREKLEIVGNLAKRMVKKAGVNMEIHLTLDREEALKDADFVTTQLRVGLLDARVKDERIPNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVLRYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTKDVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAEHGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQIVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAEAAVTGDYDKALFAMTINPLTPSESVAREILDEMLEAHKEYLPNFFK
>NZ_LT985476.1|WP_061110908.1|568167_568920_+|MurR/RpiR-family-transcriptional-regulator
MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVSTTTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQIQNAVKILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLSDKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEMYQEANITSQLPALYTIENIAREIRTQIDKEKM
>NZ_LT985476.1|WP_014600555.1|569026_569470_+|hypothetical-protein
MYSNMKEKVVFTLIMCSLMILCMSSYNILLENGIGTDSLMIILKAFVPFLFIGFLLDFFVVGKIANRLHALLVSEDASKFKKIIMMQLLMVTFMCVLMSTLSLIVNQGEWSHLGILILRNYFVALFLQIFIVSPFVRLISPRIFALL
>NZ_LT985476.1|WP_061110909.1|569515_571177_-|SulP-family-inorganic-anion-transporter
MFKHILLSLNGYKISYLRNDVISGVGVAALTIPVAMGYAQVAGLPPIYGLYASFLPVIAYVIFASSPQLIFGIDATASAITGSIILGTAGLAAGSKEAIALAPILAFFCAIFLVLFSVLKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGDSFFSSLGIIFGQFFQSNWISFAMGVVTVIIVITCKKVIPKIPMSLVVLVLGTMAAYFFKLDQYNVDIVGKIPVGFPSLALPDFGASSWALAIGGGLVCAIATFAGSLLPSESFAMRNKYTIDDNRELFAYGVSNFVAAFSGCSPASASVSRTAANEQFRGKTQMVSIVAATIIALIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKVSRREATVWIVAALGTLLVGVIFGVLLGIFLSFINVVSRSMKTPIAILGVIEGRHGYFDLKRKSEAKPIPNVVIYRYSASLFFGNFNKFADGLKEAVQDDTKLVIFEASAIINIDTTATESMKDLLKWLDDKGIEYYFADLIDHLKTSFRKHDLGYIIDNGYTKKTVEDALDAYYAEHK
>NZ_LT985476.1|WP_014600556.1|571432_572764_+|DUF1254-domain-containing-protein
MATQKNLVDLATKAYIYGFPFIFNTQQIERYVTVGIGGTKQVPFNNFTHASRLAEPSDKFVSVNNDTIYSNAPIDVSAGPVVLSVPDTSGRYYVLQFVDAWSNNFAYVGKRATGTSAGKFLLTPPNWNGDVPADMIEIKFPTNIGIIIGRLACDGEADLPTVRELQEQLKITPLNEGKEVDGFPEYDRSLGKELAFFEQLRVYMAQFPPAERDLVKQESFAPIGLMEKGVSPYSNPSEELKNALIEGAKAGLANIKKATTNFKSENGWGLTQHLFDYNADFFEIGTKKSLDWVIEDREEAYIIRAVSAITALWGNHGYEAVYLMTWTDTDGNALNGKNKYTLELNPIPPVDSFWSITMYDLPEYFLCENLINRYSIGDRTPGIQYNDDGGIAIVVSKDEPTDPKERANWLPAPDAEFRPMFRLYNPQQPLVDGSYHFPGFEKK
>NZ_LT985476.1|WP_003721320.1|572809_573550_-|MerR-family-transcriptional-regulator
MQIKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSSNPYEEEARKLWGDKVVEKANEKVNNMSEKEQLTLKESFDAEFRHLASVRKLTPESEEAQLEIDHFFHYLNDTHGNIYSLEAFASLGEMYVNDERFTKNIDQFGDGLSQFLQEAMTIYAKNK
>NZ_LT985476.1|WP_031665225.1|573779_575255_+|hypothetical-protein
MIRKVKSISMWLWHHLTPQIFAVICVFIITIIALFMPPYIGMADNGDFFRIFSSNGLFVNNTNYDALQFGHFVKEFGIYQYFNENQVAIYSSQSIFIQMALLLNKLFWSTTVFDVRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYVVAALTVFIFADTAYTAYFNSFFSEGLILIMMLYISAGFLLLYQHKYNDYAMLGLIFVASLILITAKQQNAPIAVVIAVCGILVFFIRKNRAFRISAAATFLVIFLSGVVMYVFIPGEFVTINQYQTMTRGVLLDSENPEKSLEEMGMNSEFALLKGTNFYQKYKMIDLDSKLMEKEFYPNYNFVTVLSYYLENPKQFGKMLDLSAQNSFSIRPFEMGNFEKATGYKFKEKTHFFSAYSDVKEKFAPAKFTFLILWALVFLICYGVSAFKHFREKNIRGTLLFDLIVLLIGSGFAVILVTIVGDGEADLTKHNFLFNVCFDLTMLIGAASLLEVYLKKRGERNA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LT985476_2	2.7\|562570\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562570-562604	35	NZ_LT985476.1	2649448-2649482	0	1.0
NZ_LT985476_2	2.18\|563287\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	563287-563321	35	NZ_LT985476.1	2661104-2661138	0	1.0
NZ_LT985476_1	1.1\|546509\|35\|NZ_LT985476\|CRT	546509-546543	35	NZ_LT985476.1	2632459-2632493	1	0.971

1. spacer 2.7|562570|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to position: 2649448-2649482, mismatch: 0, identity: 1.0

ctcacttccaccacctcgcattctgtgtttgtttc	CRISPR spacer
ctcacttccaccacctcgcattctgtgtttgtttc	Protospacer
***********************************

2. spacer 2.18|563287|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to position: 2661104-2661138, mismatch: 0, identity: 1.0

caagtaacaggaaaaggacaagtatatctattaaa	CRISPR spacer
caagtaacaggaaaaggacaagtatatctattaaa	Protospacer
***********************************

3. spacer 1.1|546509|35|NZ_LT985476|CRT matches to position: 2632459-2632493, mismatch: 1, identity: 0.971

taaaaaggtttattgttatcaccagctttcattaa	CRISPR spacer
taaaaaggcttattgttatcaccagctttcattaa	Protospacer
********.**************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT985476_1	1.1\|546509\|35\|NZ_LT985476\|CRT	546509-546543	35	DQ003642	Listeria phage A006, complete genome	16993-17027	0	1.0
NZ_LT985476_1	1.5\|546766\|36\|NZ_LT985476\|CRT	546766-546801	36	MT500540	Listeria phage LP-HM00113468, complete genome	683-718	0	1.0
NZ_LT985476_1	1.5\|546766\|36\|NZ_LT985476\|CRT	546766-546801	36	NC_009812	Listeria phage B025, complete genome	3896-3931	0	1.0
NZ_LT985476_1	1.5\|546766\|36\|NZ_LT985476\|CRT	546766-546801	36	KJ094023	Listeria phage LP-101, complete genome	3936-3971	0	1.0
NZ_LT985476_2	2.4\|562378\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562378-562412	35	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	216847-216881	0	1.0
NZ_LT985476_2	2.4\|562378\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562378-562412	35	KJ094023	Listeria phage LP-101, complete genome	7320-7354	0	1.0
NZ_LT985476_2	2.11\|562830\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562830-562864	35	KJ094022	Listeria phage LP-030-3, complete genome	24941-24975	0	1.0
NZ_LT985476_2	2.11\|562830\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562830-562864	35	KP399678	Listeria phage vB_LmoS_293, complete genome	16544-16578	0	1.0
NZ_LT985476_2	2.16\|563155\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	563155-563190	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	225937-225972	0	1.0
NZ_LT985476_2	2.16\|563155\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	563155-563190	36	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	577-612	0	1.0
NZ_LT985476_2	2.16\|563155\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	563155-563190	36	KJ094023	Listeria phage LP-101, complete genome	16410-16445	0	1.0
NZ_LT985476_2	2.18\|563287\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	563287-563321	35	KP399678	Listeria phage vB_LmoS_293, complete genome	29515-29549	0	1.0
NZ_LT985476_1	1.4\|546702\|35\|NZ_LT985476\|CRT	546702-546736	35	NC_021539	Listeria phage LP-030-2, complete genome	18926-18960	1	0.971
NZ_LT985476_1	1.4\|546702\|35\|NZ_LT985476\|CRT	546702-546736	35	KJ094023	Listeria phage LP-101, complete genome	22882-22916	1	0.971
NZ_LT985476_1	1.5\|546766\|36\|NZ_LT985476\|CRT	546766-546801	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	213463-213498	1	0.972
NZ_LT985476_1	1.8\|546509\|36\|NZ_LT985476\|CRISPRCasFinder	546509-546544	36	DQ003642	Listeria phage A006, complete genome	16992-17027	1	0.972
NZ_LT985476_1	1.11\|546702\|36\|NZ_LT985476\|CRISPRCasFinder	546702-546737	36	NC_021539	Listeria phage LP-030-2, complete genome	18926-18961	1	0.972
NZ_LT985476_1	1.11\|546702\|36\|NZ_LT985476\|CRISPRCasFinder	546702-546737	36	KJ094023	Listeria phage LP-101, complete genome	22882-22917	1	0.972
NZ_LT985476_1	1.12\|546766\|37\|NZ_LT985476\|CRISPRCasFinder	546766-546802	37	MT500540	Listeria phage LP-HM00113468, complete genome	682-718	1	0.973
NZ_LT985476_1	1.12\|546766\|37\|NZ_LT985476\|CRISPRCasFinder	546766-546802	37	NC_009812	Listeria phage B025, complete genome	3896-3932	1	0.973
NZ_LT985476_1	1.12\|546766\|37\|NZ_LT985476\|CRISPRCasFinder	546766-546802	37	KJ094023	Listeria phage LP-101, complete genome	3936-3972	1	0.973
NZ_LT985476_1	1.15\|546585\|21\|NZ_LT985476\|PILER-CR	546585-546605	21	NC_009812	Listeria phage B025, complete genome	30718-30738	1	0.952
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP030151	Bacillus velezensis strain DSYZ plasmid pDSYZ, complete sequence	39679-39714	1	0.972
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP026611	Bacillus velezensis strain CGMCC 11640 plasmid unnamed, complete sequence	16086-16121	1	0.972
NZ_LT985476_2	2.2\|562251\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562251-562285	35	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	2953-2987	1	0.971
NZ_LT985476_2	2.2\|562251\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562251-562285	35	DQ003642	Listeria phage A006, complete genome	18730-18764	1	0.971
NZ_LT985476_2	2.4\|562378\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562378-562412	35	MT500540	Listeria phage LP-HM00113468, complete genome	37597-37631	1	0.971
NZ_LT985476_2	2.10\|562765\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562765-562800	36	MH341451	Listeria phage PSU-VKH-LP019, complete genome	36216-36251	1	0.972
NZ_LT985476_1	1.2\|546573\|37\|NZ_LT985476\|CRT	546573-546609	37	NC_009812	Listeria phage B025, complete genome	30705-30741	2	0.946
NZ_LT985476_1	1.4\|546702\|35\|NZ_LT985476\|CRT	546702-546736	35	NC_009812	Listeria phage B025, complete genome	23381-23415	2	0.943
NZ_LT985476_1	1.11\|546702\|36\|NZ_LT985476\|CRISPRCasFinder	546702-546737	36	NC_009812	Listeria phage B025, complete genome	23381-23416	2	0.944
NZ_LT985476_1	1.12\|546766\|37\|NZ_LT985476\|CRISPRCasFinder	546766-546802	37	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	213463-213499	2	0.946
NZ_LT985476_2	2.4\|562378\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562378-562412	35	NC_009812	Listeria phage B025, complete genome	7281-7315	2	0.943
NZ_LT985476_2	2.11\|562830\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562830-562864	35	MH341452	Listeria phage PSU-VKH-LP040, complete genome	16559-16593	2	0.943
NZ_LT985476_2	2.11\|562830\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562830-562864	35	DQ003637	Listeria phage A500, complete genome	16524-16558	2	0.943
NZ_LT985476_2	2.18\|563287\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	563287-563321	35	KP399677	Listeria phage vB_LmoS_188, complete genome	28146-28180	2	0.943
NZ_LT985476_1	1.9\|546573\|38\|NZ_LT985476\|CRISPRCasFinder	546573-546610	38	NC_009812	Listeria phage B025, complete genome	30704-30741	3	0.921
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NC_003042	Clostridium perfringens str. 13 plasmid pCP13, complete sequence	28660-28695	3	0.917
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	83802-83837	3	0.917
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP020748	Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence	62164-62199	3	0.917
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP014851	Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence	19291-19326	3	0.917
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP035233	Bacillus glycinifermentans strain SRCM103574 plasmid unnamed1, complete sequence	20469-20504	3	0.917
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NC_023917	Clostridium perfringens plasmid pCP-OS1 DNA, complete sequence, strain: OS1	28872-28907	3	0.917
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NC_023918	Clostridium perfringens plasmid pCP-TS1 DNA, complete sequence, strain: TS1	28854-28889	3	0.917
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_MK275619	Clostridium perfringens strain JXJA17 plasmid p1, complete sequence	3604-3639	3	0.917
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	87536-87571	3	0.917
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP013043	Clostridium perfringens strain JP55 plasmid pJFP55H, complete sequence	7431-7466	3	0.917
NZ_LT985476_2	2.6\|562506\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562506-562540	35	MH341453	Listeria phage PSU-VKH-LP041, complete genome	21004-21038	3	0.914
NZ_LT985476_2	2.10\|562765\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562765-562800	36	NC_003216	Listeria phage A118, complete genome	38027-38062	3	0.917
NZ_LT985476_2	2.10\|562765\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562765-562800	36	AJ242593	Bacteriophage A118 complete genome	38027-38062	3	0.917
NZ_LT985476_2	2.10\|562765\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562765-562800	36	MH341452	Listeria phage PSU-VKH-LP040, complete genome	36777-36812	3	0.917
NZ_LT985476_2	2.10\|562765\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562765-562800	36	DQ003642	Listeria phage A006, complete genome	35322-35357	3	0.917
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP040897	Enterococcus faecalis strain HA-1 plasmid punnamed	68086-68121	4	0.889
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP046109	Enterococcus faecalis strain 133170041-3 plasmid pAD1, complete sequence	34880-34915	4	0.889
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP028837	Enterococcus faecalis strain FC plasmid unnamed2, complete sequence	39714-39749	4	0.889
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NC_011642	Enterococcus faecalis plasmid pMG2200, complete sequence	45173-45208	4	0.889
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP028284	Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed2, complete sequence	49153-49188	4	0.889
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP042215	Enterococcus faecalis strain L15 plasmid pL15-A, complete sequence	65062-65097	4	0.889
NZ_LT985476_1	1.5\|546766\|36\|NZ_LT985476\|CRT	546766-546801	36	JN700520	Staphylococcus phage StB12, complete genome	6832-6867	5	0.861
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	MK798156	Enterococcus hirae strain fas4 plasmid pfas4-2, complete sequence	78823-78858	5	0.861
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP054832	Staphylococcus saprophyticus strain UTI-045 plasmid pUTI-045-1, complete sequence	63563-63598	5	0.861
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP025497	Staphylococcus aureus subsp. aureus strain 3020.C01 plasmid p3020.C01b, complete sequence	11361-11396	5	0.861
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP016860	Staphylococcus aureus subsp. aureus strain 1969.N plasmid p1969.Nb, complete sequence	11361-11396	5	0.861
NZ_LT985476_2	2.1\|562186\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562186-562221	36	NZ_CP012121	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 plasmid pC02, complete sequence	11362-11397	5	0.861
NZ_LT985476_2	2.18\|563287\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	563287-563321	35	DQ003637	Listeria phage A500, complete genome	28494-28528	5	0.857
NZ_LT985476_1	1.12\|546766\|37\|NZ_LT985476\|CRISPRCasFinder	546766-546802	37	JN700520	Staphylococcus phage StB12, complete genome	6832-6868	6	0.838
NZ_LT985476_2	2.19\|563351\|37\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	563351-563387	37	CP011103	Listeria phage LWP01, complete genome	9320-9356	6	0.838
NZ_LT985476_2	2.20\|563417\|36\|NZ_LT985476\|CRISPRCasFinder,CRT	563417-563452	36	CP011103	Listeria phage LWP01, complete genome	18684-18719	6	0.833
NZ_LT985476_2	2.7\|562570\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562570-562604	35	DQ003642	Listeria phage A006, complete genome	1-28	7	0.8
NZ_LT985476_1	1.5\|546766\|36\|NZ_LT985476\|CRT	546766-546801	36	MW084976	Bacillus phage Kirov, complete genome	27565-27600	8	0.778
NZ_LT985476_2	2.9\|562700\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562700-562735	36	NC_003216	Listeria phage A118, complete genome	20894-20929	8	0.778
NZ_LT985476_2	2.9\|562700\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562700-562735	36	AJ242593	Bacteriophage A118 complete genome	20894-20929	8	0.778
NZ_LT985476_2	2.9\|562700\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562700-562735	36	X85008	Bacteriophage A118 hol118 and ply118 genes	1142-1177	8	0.778
NZ_LT985476_2	2.9\|562700\|36\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562700-562735	36	KJ094023	Listeria phage LP-101, complete genome	19918-19953	8	0.778
NZ_LT985476_1	1.12\|546766\|37\|NZ_LT985476\|CRISPRCasFinder	546766-546802	37	MW084976	Bacillus phage Kirov, complete genome	27565-27601	9	0.757
NZ_LT985476_2	2.7\|562570\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562570-562604	35	MH341451	Listeria phage PSU-VKH-LP019, complete genome	1-25	10	0.714
NZ_LT985476_2	2.7\|562570\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562570-562604	35	KP399677	Listeria phage vB_LmoS_188, complete genome	1-25	10	0.714

1. spacer 1.1|546509|35|NZ_LT985476|CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

taaaaaggtttattgttatcaccagctttcattaa	CRISPR spacer
taaaaaggtttattgttatcaccagctttcattaa	Protospacer
***********************************

2. spacer 1.5|546766|36|NZ_LT985476|CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaa	Protospacer
************************************

3. spacer 1.5|546766|36|NZ_LT985476|CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 0, identity: 1.0

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaa	Protospacer
************************************

4. spacer 1.5|546766|36|NZ_LT985476|CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaa	Protospacer
************************************

5. spacer 2.4|562378|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 0, identity: 1.0

gaaggataaaatattttaagagtaggtgaactcct	CRISPR spacer
gaaggataaaatattttaagagtaggtgaactcct	Protospacer
***********************************

6. spacer 2.4|562378|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

gaaggataaaatattttaagagtaggtgaactcct	CRISPR spacer
gaaggataaaatattttaagagtaggtgaactcct	Protospacer
***********************************

7. spacer 2.11|562830|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 0, identity: 1.0

cggggaatatctctttaaagcttaaatacgaatgc	CRISPR spacer
cggggaatatctctttaaagcttaaatacgaatgc	Protospacer
***********************************

8. spacer 2.11|562830|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

cggggaatatctctttaaagcttaaatacgaatgc	CRISPR spacer
cggggaatatctctttaaagcttaaatacgaatgc	Protospacer
***********************************

9. spacer 2.16|563155|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 0, identity: 1.0

atttaagtattaatgtttttaaaaagtctgatttat	CRISPR spacer
atttaagtattaatgtttttaaaaagtctgatttat	Protospacer
************************************

10. spacer 2.16|563155|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 0, identity: 1.0

atttaagtattaatgtttttaaaaagtctgatttat	CRISPR spacer
atttaagtattaatgtttttaaaaagtctgatttat	Protospacer
************************************

11. spacer 2.16|563155|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

atttaagtattaatgtttttaaaaagtctgatttat	CRISPR spacer
atttaagtattaatgtttttaaaaagtctgatttat	Protospacer
************************************

12. spacer 2.18|563287|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

caagtaacaggaaaaggacaagtatatctattaaa	CRISPR spacer
caagtaacaggaaaaggacaagtatatctattaaa	Protospacer
***********************************

13. spacer 1.4|546702|35|NZ_LT985476|CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.971

ctaaaacatccttcactgtatcaactcctttctat	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctat	Protospacer
******************* ***************

14. spacer 1.4|546702|35|NZ_LT985476|CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.971

ctaaaacatccttcactgtatcaactcctttctat	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctat	Protospacer
******************* ***************

15. spacer 1.5|546766|36|NZ_LT985476|CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.972

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaatagattatgactatcaaattaa	Protospacer
****************.*******************

16. spacer 1.8|546509|36|NZ_LT985476|CRISPRCasFinder matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.972

taaaaaggtttattgttatcaccagctttcattaag	CRISPR spacer
taaaaaggtttattgttatcaccagctttcattaac	Protospacer
***********************************

17. spacer 1.11|546702|36|NZ_LT985476|CRISPRCasFinder matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.972

ctaaaacatccttcactgtatcaactcctttctata	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctata	Protospacer
******************* ****************

18. spacer 1.11|546702|36|NZ_LT985476|CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.972

ctaaaacatccttcactgtatcaactcctttctata	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctata	Protospacer
******************* ****************

19. spacer 1.12|546766|37|NZ_LT985476|CRISPRCasFinder matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 1, identity: 0.973

aaaataggaggaaataaattatgactatcaaattaag	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaaa	Protospacer
************************************.

20. spacer 1.12|546766|37|NZ_LT985476|CRISPRCasFinder matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.973

aaaataggaggaaataaattatgactatcaaattaag	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaaa	Protospacer
************************************.

21. spacer 1.12|546766|37|NZ_LT985476|CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.973

aaaataggaggaaataaattatgactatcaaattaag	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaaa	Protospacer
************************************.

22. spacer 1.15|546585|21|NZ_LT985476|PILER-CR matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.952

atttctcctacgcttttctta	CRISPR spacer
atttctcctgcgcttttctta	Protospacer
*********.***********

23. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030151 (Bacillus velezensis strain DSYZ plasmid pDSYZ, complete sequence) position: , mismatch: 1, identity: 0.972

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
ttcattacaatactgataatattcatgttcatattg	Protospacer
************* **********************

24. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026611 (Bacillus velezensis strain CGMCC 11640 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.972

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
ttcattacaatactgataatattcatgttcatattg	Protospacer
************* **********************

25. spacer 2.2|562251|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 1, identity: 0.971

tcgcttgtgtataaacacaagtctaccgcaacacc	CRISPR spacer
tcgcttgtgtataaacacaagtctaccgctacacc	Protospacer
***************************** *****

26. spacer 2.2|562251|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.971

tcgcttgtgtataaacacaagtctaccgcaacacc	CRISPR spacer
tcgcttgtgtataaacacaagtctaccgctacacc	Protospacer
***************************** *****

27. spacer 2.4|562378|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 1, identity: 0.971

gaaggataaaatattttaagagtaggtgaactcct	CRISPR spacer
gaaggataaaatattttaagagtaggtgaaatcct	Protospacer
****************************** ****

28. spacer 2.10|562765|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 1, identity: 0.972

tcgtttgcaaatgaatcgctcttctggctcgtatcc	CRISPR spacer
tcgtttgcaaatgaatcactcttctggctcgtatcc	Protospacer
*****************.******************

29. spacer 1.2|546573|37|NZ_LT985476|CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.946

tttatttctcctacgcttttcttatttctgtaaataa	CRISPR spacer
tttatttctcctgcgcttttcttatttttgtaaataa	Protospacer
************.**************.*********

30. spacer 1.4|546702|35|NZ_LT985476|CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.943

ctaaaacatccttcactgtatcaactcctttctat	CRISPR spacer
ctaaaacatccttcactatctcaactcctttctat	Protospacer
*****************.* ***************

31. spacer 1.11|546702|36|NZ_LT985476|CRISPRCasFinder matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.944

ctaaaacatccttcactgtatcaactcctttctata	CRISPR spacer
ctaaaacatccttcactatctcaactcctttctata	Protospacer
*****************.* ****************

32. spacer 1.12|546766|37|NZ_LT985476|CRISPRCasFinder matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 2, identity: 0.946

aaaataggaggaaataaattatgactatcaaattaag	CRISPR spacer
aaaataggaggaaatagattatgactatcaaattaaa	Protospacer
****************.*******************.

33. spacer 2.4|562378|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.943

gaaggataaaatattttaagagtaggtgaactcct	CRISPR spacer
gaaggataaaaaattttaagagtaggtgaaatcct	Protospacer
*********** ****************** ****

34. spacer 2.11|562830|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 2, identity: 0.943

cggggaatatctctttaaagcttaaatacgaatgc	CRISPR spacer
ctggaaatatctctttaaagcttaaatacgaatgc	Protospacer
* **.******************************

35. spacer 2.11|562830|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 2, identity: 0.943

cggggaatatctctttaaagcttaaatacgaatgc	CRISPR spacer
ctggaaatatctctttaaagcttaaatacgaatgc	Protospacer
* **.******************************

36. spacer 2.18|563287|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 2, identity: 0.943

caagtaacaggaaaaggacaagtatatctattaaa	CRISPR spacer
caaataacaggcaaaggacaagtatatctattaaa	Protospacer
***.******* ***********************

37. spacer 1.9|546573|38|NZ_LT985476|CRISPRCasFinder matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 3, identity: 0.921

tttatttctcctacgcttttcttatttctgtaaataag	CRISPR spacer
tttatttctcctgcgcttttcttatttttgtaaataaa	Protospacer
************.**************.*********.

38. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NC_003042 (Clostridium perfringens str. 13 plasmid pCP13, complete sequence) position: , mismatch: 3, identity: 0.917

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
tacactacaatacagataatattcatgttcatattg	Protospacer
* **.********.**********************

39. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 3, identity: 0.917

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
ttcattataatacggataatattcatattcatatcg	Protospacer
*******.******************.*******.*

40. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020748 (Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence) position: , mismatch: 3, identity: 0.917

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
ttcattataatacggataatattcatgttcatgtcg	Protospacer
*******.************************.*.*

41. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014851 (Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence) position: , mismatch: 3, identity: 0.917

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
ttcattataatacggataatattcatgttcatgtcg	Protospacer
*******.************************.*.*

42. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035233 (Bacillus glycinifermentans strain SRCM103574 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.917

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
ttcattataataccgataatattcatgttcatatcg	Protospacer
*******.***** ********************.*

43. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NC_023917 (Clostridium perfringens plasmid pCP-OS1 DNA, complete sequence, strain: OS1) position: , mismatch: 3, identity: 0.917

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
tacactacaatacagataatattcatgttcatattg	Protospacer
* **.********.**********************

44. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NC_023918 (Clostridium perfringens plasmid pCP-TS1 DNA, complete sequence, strain: TS1) position: , mismatch: 3, identity: 0.917

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
tacactacaatacagataatattcatgttcatattg	Protospacer
* **.********.**********************

45. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK275619 (Clostridium perfringens strain JXJA17 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.917

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
tacactacaatacagataatattcatgttcatattg	Protospacer
* **.********.**********************

46. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 3, identity: 0.917

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
ttcattataatacggataatattcatattcatatcg	Protospacer
*******.******************.*******.*

47. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013043 (Clostridium perfringens strain JP55 plasmid pJFP55H, complete sequence) position: , mismatch: 3, identity: 0.917

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
tacattataatactgataatattcatgttcatattg	Protospacer
* *****.***** **********************

48. spacer 2.6|562506|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 3, identity: 0.914

ttgcttcccaacgagctaaatttgcgttaaatcgg	CRISPR spacer
ttgcttcccaacgagctaaatttgcattaaaacgt	Protospacer
*************************.***** **

49. spacer 2.10|562765|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 3, identity: 0.917

tcgtttgcaaatgaatcgctcttctggctcgtatcc	CRISPR spacer
tcacttgcaaatgaatcgctcttctgactcgtatcc	Protospacer
**..**********************.*********

50. spacer 2.10|562765|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 3, identity: 0.917

tcgtttgcaaatgaatcgctcttctggctcgtatcc	CRISPR spacer
tcacttgcaaatgaatcgctcttctgactcgtatcc	Protospacer
**..**********************.*********

51. spacer 2.10|562765|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 3, identity: 0.917

tcgtttgcaaatgaatcgctcttctggctcgtatcc	CRISPR spacer
tcacttgcaaatgaatcactcttctggctcgtatcc	Protospacer
**..*************.******************

52. spacer 2.10|562765|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 3, identity: 0.917

tcgtttgcaaatgaatcgctcttctggctcgtatcc	CRISPR spacer
tcacttgcaaatgaatcgctcttctgactcgtatcc	Protospacer
**..**********************.*********

53. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040897 (Enterococcus faecalis strain HA-1 plasmid punnamed) position: , mismatch: 4, identity: 0.889

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
tccactacaatacggataatattcatgttcatgtcg	Protospacer
*.**.***************************.*.*

54. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046109 (Enterococcus faecalis strain 133170041-3 plasmid pAD1, complete sequence) position: , mismatch: 4, identity: 0.889

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
tccactacaatacggataatattcatgttcatgtcg	Protospacer
*.**.***************************.*.*

55. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028837 (Enterococcus faecalis strain FC plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.889

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
tccactacaatacggataatattcatgttcatgtcg	Protospacer
*.**.***************************.*.*

56. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NC_011642 (Enterococcus faecalis plasmid pMG2200, complete sequence) position: , mismatch: 4, identity: 0.889

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
tccactacaatacggataatattcatgttcatgtcg	Protospacer
*.**.***************************.*.*

57. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028284 (Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.889

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
tccactacaatacggataatattcatgttcatgtcg	Protospacer
*.**.***************************.*.*

58. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042215 (Enterococcus faecalis strain L15 plasmid pL15-A, complete sequence) position: , mismatch: 4, identity: 0.889

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
tccactacaatacggataatattcatgttcatgtcg	Protospacer
*.**.***************************.*.*

59. spacer 1.5|546766|36|NZ_LT985476|CRT matches to JN700520 (Staphylococcus phage StB12, complete genome) position: , mismatch: 5, identity: 0.861

aaaataggaggaaataaattatgact-atcaaattaa	CRISPR spacer
taaataggaggaagtaaataatgactaatcaaacta-	Protospacer
 ************.***** ****** ******.**

60. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to MK798156 (Enterococcus hirae strain fas4 plasmid pfas4-2, complete sequence) position: , mismatch: 5, identity: 0.861

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
tccattataatacagataatattcatgttcatgtcg	Protospacer
*.*****.*****.******************.*.*

61. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054832 (Staphylococcus saprophyticus strain UTI-045 plasmid pUTI-045-1, complete sequence) position: , mismatch: 5, identity: 0.861

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
tacattacaatactgataatatacatgttcatgtag	Protospacer
* *********** ******** *********.* *

62. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025497 (Staphylococcus aureus subsp. aureus strain 3020.C01 plasmid p3020.C01b, complete sequence) position: , mismatch: 5, identity: 0.861

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
tacattacaatactgataatatacatgttcatgtag	Protospacer
* *********** ******** *********.* *

63. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016860 (Staphylococcus aureus subsp. aureus strain 1969.N plasmid p1969.Nb, complete sequence) position: , mismatch: 5, identity: 0.861

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
tacattacaatactgataatatacatgttcatgtag	Protospacer
* *********** ******** *********.* *

64. spacer 2.1|562186|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012121 (Staphylococcus aureus subsp. aureus strain USA300_2014.C02 plasmid pC02, complete sequence) position: , mismatch: 5, identity: 0.861

ttcattacaatacggataatattcatgttcatattg	CRISPR spacer
tacattacaatactgataatatacatgttcatgtag	Protospacer
* *********** ******** *********.* *

65. spacer 2.18|563287|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 5, identity: 0.857

caagtaacaggaaaaggacaagtatatctattaaa	CRISPR spacer
agaataacaggcaaagggcaagtatatctattaaa	Protospacer
 .*.******* *****.*****************

66. spacer 1.12|546766|37|NZ_LT985476|CRISPRCasFinder matches to JN700520 (Staphylococcus phage StB12, complete genome) position: , mismatch: 6, identity: 0.838

aaaataggaggaaataaattatgact-atcaaattaag	CRISPR spacer
taaataggaggaagtaaataatgactaatcaaactat-	Protospacer
 ************.***** ****** ******.**

67. spacer 2.19|563351|37|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to CP011103 (Listeria phage LWP01, complete genome) position: , mismatch: 6, identity: 0.838

tacaacatgagctggctattctcttctgctgaaacag	CRISPR spacer
tacagcatgagctggctattctcctctgcgaagactg	Protospacer
****.******************.***** .*.** *

68. spacer 2.20|563417|36|NZ_LT985476|CRISPRCasFinder,CRT matches to CP011103 (Listeria phage LWP01, complete genome) position: , mismatch: 6, identity: 0.833

cctaatacacctaaactactcttatatataaaaaca	CRISPR spacer
ataaatacacctaaactactcttatatatagatata	Protospacer
 . ***************************.* *.*

69. spacer 2.7|562570|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 7, identity: 0.8

ctcacttccaccacctcgcattctgtgtttgtttc	CRISPR spacer
ctcacttccaccacctcgcattctgtgt-------	Protospacer
****************************

70. spacer 1.5|546766|36|NZ_LT985476|CRT matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 8, identity: 0.778

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
ttaataggaggaaataaataatggctatcgtaagaa	Protospacer
  ***************** ***.*****. *  **

71. spacer 2.9|562700|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 8, identity: 0.778

-----aaataatattcgaaggcaacaaactaaatcttttta	CRISPR spacer
cccacaaacg-----cgagggcaacaaactaaatcttttta	Protospacer
     ***..     ***.**********************

72. spacer 2.9|562700|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 8, identity: 0.778

-----aaataatattcgaaggcaacaaactaaatcttttta	CRISPR spacer
cccacaaacg-----cgagggcaacaaactaaatcttttta	Protospacer
     ***..     ***.**********************

73. spacer 2.9|562700|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 8, identity: 0.778

-----aaataatattcgaaggcaacaaactaaatcttttta	CRISPR spacer
cccacaaacg-----cgagggcaacaaactaaatcttttta	Protospacer
     ***..     ***.**********************

74. spacer 2.9|562700|36|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 8, identity: 0.778

aaataatattcgaaggcaacaaactaaatcttttta	CRISPR spacer
ccgcaagaagcgagggcaacaaactaaatcttttta	Protospacer
  ..** *  ***.**********************

75. spacer 1.12|546766|37|NZ_LT985476|CRISPRCasFinder matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 9, identity: 0.757

aaaataggaggaaataaattatgactatcaaattaag	CRISPR spacer
ttaataggaggaaataaataatggctatcgtaagaaa	Protospacer
  ***************** ***.*****. *  **.

76. spacer 2.7|562570|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 10, identity: 0.714

ctcacttccaccacctcgcattctgtgtttgtttc	CRISPR spacer
ctcacttccaccacctcgcattctg----------	Protospacer
*************************

77. spacer 2.7|562570|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 10, identity: 0.714

ctcacttccaccacctcgcattctgtgtttgtttc	CRISPR spacer
ctcacttccaccacctcgcattctg----------	Protospacer
*************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1135568 : 1142990

Hokovirus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721506.1\|1135568_1135952_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
WP_003732709.1\|1135973_1136957_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.1e-12	34.6
WP_061111004.1\|1136971_1137985_+	glycosyltransferase	A0A1V0SAH6	Catovirus	6.0e-11	32.0
WP_003721509.1\|1138193_1139684_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_003727000.1\|1139695_1140520_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	9.7e-68	52.6
WP_061111005.1\|1140532_1140841_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003730540.1\|1140900_1141305_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_010989661.1\|1141433_1142990_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.3e-17	28.1

DBSCAN-SWA_2

1285637 : 1345080

Bacillus_virus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003732792.1\|1285637_1286777_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003723563.1\|1286857_1287253_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|1287403_1287619_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010989719.1\|1287737_1288271_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003732795.1\|1288288_1288954_+	hypothetical protein	NA	NA	NA	NA
WP_003732796.1\|1289215_1290154_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|1290268_1291552_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|1291738_1292998_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_014601954.1\|1293116_1293683_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_009924619.1\|1293717_1294287_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003723889.1\|1294388_1294931_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003723890.1\|1294940_1295804_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003723891.1\|1295800_1296586_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	3.0e-26	39.2
WP_003723892.1\|1296719_1297580_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_003732799.1\|1297851_1299930_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	3.2e-107	37.5
WP_003723999.1\|1299992_1301297_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_009911635.1\|1301579_1302482_+	tyrosine recombinase XerC	A0A097EYL9	Mycobacterium_phage	1.2e-13	28.6
WP_061111028.1\|1302502_1303042_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_010989722.1\|1303055_1304465_+\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	4.9e-43	27.7
WP_003726695.1\|1304485_1305265_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_012951573.1\|1305367_1305787_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003724130.1\|1305809_1306121_+	hypothetical protein	NA	NA	NA	NA
WP_009932949.1\|1306123_1306996_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003724132.1\|1307037_1307634_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003732802.1\|1307791_1308199_+	CoA-binding protein	NA	NA	NA	NA
WP_003723731.1\|1308379_1310347_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	6.7e-123	42.5
WP_010989723.1\|1310343_1312803_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	4.7e-102	31.6
WP_009913867.1\|1312885_1313353_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_033920303.1\|1313679_1315413_+	LapB repeat-containing protein	NA	NA	NA	NA
WP_061111029.1\|1315744_1317541_+	class 1 internalin InlK	NA	NA	NA	NA
WP_012951576.1\|1317574_1319443_-	peptidoglycan O-acetyltransferase OatA	B5WZU0	Pseudomonas_phage	6.5e-43	31.9
WP_003723737.1\|1319655_1320354_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	1.3e-12	32.4
WP_003723738.1\|1320586_1322263_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_061111030.1\|1322388_1323306_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003719566.1\|1323428_1323662_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_022741839.1\|1323772_1324996_+	GTPase HflX	NA	NA	NA	NA
WP_061111031.1\|1324988_1326215_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_003719570.1\|1326418_1326787_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003723435.1\|1326857_1328192_+	type I glutamate--ammonia ligase	A0A1V0SJ53	Klosneuvirus	2.0e-06	26.4
WP_003723436.1\|1328335_1329631_+	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	1.8e-145	61.6
WP_003723437.1\|1329674_1330196_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003723438.1\|1330225_1330840_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	9.3e-15	62.1
WP_003723439.1\|1330997_1331327_+	cell division suppressor protein YneA	NA	NA	NA	NA
WP_003723440.1\|1331418_1331646_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_003732809.1\|1331792_1333787_+	transketolase	NA	NA	NA	NA
WP_003723442.1\|1334007_1334247_+	YneF family protein	NA	NA	NA	NA
WP_003723443.1\|1334297_1335140_-	DUF2785 domain-containing protein	NA	NA	NA	NA
WP_003723444.1\|1335158_1335890_-	methyltransferase domain-containing protein	A0A1X9I6N4	Streptococcus_phage	1.2e-80	59.1
WP_003723445.1\|1335911_1336418_-	ParB-like nuclease domain-containing protein	A0A220GKT8	Streptococcus_phage	4.0e-56	66.7
WP_014931398.1\|1336427_1337732_-	DUF3440 domain-containing protein	A0A220GKF8	Streptococcus_phage	9.5e-134	52.1
WP_077906794.1\|1337721_1338927_-	helicase SNF2	L0P6E9	Lactobacillus_phage	4.9e-92	47.1
WP_003723448.1\|1338904_1339279_-	hypothetical protein	NA	NA	NA	NA
WP_003723449.1\|1339571_1340300_+	UMP kinase	NA	NA	NA	NA
WP_003723450.1\|1340299_1340857_+	ribosome recycling factor	NA	NA	NA	NA
WP_039385819.1\|1341086_1341845_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	7.4e-22	41.4
WP_003727496.1\|1341858_1342647_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_014601969.1\|1342661_1343804_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_003723454.1\|1343817_1345080_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

DBSCAN-SWA_3

1832265 : 1840551

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722243.1\|1832265_1832832_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9
WP_014602075.1\|1832828_1833878_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.0e-61	43.2
WP_003722245.1\|1833896_1835324_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_039384720.1\|1835308_1837528_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.5e-159	41.1
WP_003733240.1\|1837520_1838204_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_015454911.1\|1838207_1838453_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_054314363.1\|1838464_1839178_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	5.1e-41	37.8
WP_003729814.1\|1839258_1840551_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0

DBSCAN-SWA_4

2499353 : 2507197

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061110775.1\|2499353_2500325_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	1.5e-51	39.4
WP_003722605.1\|2500332_2501301_-	YvcK family protein	A1IMD5	Streptococcus_phage	6.7e-68	43.3
WP_010990001.1\|2501302_2502178_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	3.2e-08	29.7
WP_031645160.1\|2502285_2504016_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	3.3e-174	53.3
WP_003734087.1\|2504057_2505119_-	galactose mutarotase	NA	NA	NA	NA
WP_009924988.1\|2505135_2506119_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	2.6e-51	37.2
WP_003732496.1\|2506237_2507197_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.9e-87	53.4

DBSCAN-SWA_5

2593657 : 2665681

Listeria_phage(86.79%)

holin,protease,tail,terminase,tRNA,integrase

attL 2595241:2595256|attR 2672357:2672372

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003723609.1\|2593657_2595328_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
2595241:2595256	attL	NA	NA	NA	NA
WP_003723610.1\|2595324_2595774_-	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_003723611.1\|2595851_2596505_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_003723612.1\|2596579_2596765_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_009924630.1\|2596799_2598122_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	2.6e-30	33.2
WP_061105209.1\|2598136_2598973_-	lipoyl-[GcvH]:protein N-lipoyltransferase	NA	NA	NA	NA
WP_003723615.1\|2599290_2599491_-	hypothetical protein	NA	NA	NA	NA
WP_003723616.1\|2599512_2599836_-	YxeA family protein	NA	NA	NA	NA
WP_023548342.1\|2599990_2601652_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003726112.1\|2601786_2602401_-	SdpI family protein	NA	NA	NA	NA
WP_003733267.1\|2602424_2603057_-	nicotinamidase	NA	NA	NA	NA
WP_003723621.1\|2603057_2603582_-	dihydrofolate reductase	NA	NA	NA	NA
WP_012952036.1\|2603584_2604583_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_003723623.1\|2604679_2604952_-	hypothetical protein	NA	NA	NA	NA
WP_003723624.1\|2605000_2605912_-	cation transporter	NA	NA	NA	NA
WP_061110779.1\|2606038_2610631_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_039176749.1\|2610851_2611679_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_003733263.1\|2611793_2612669_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003723278.1\|2612679_2612973_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003733262.1\|2613005_2613167_-	hypothetical protein	NA	NA	NA	NA
WP_014601161.1\|2613235_2613904_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.8e-38	42.0
WP_003733261.1\|2613903_2614992_-	ABC transporter permease	NA	NA	NA	NA
WP_061110780.1\|2615070_2616450_-	HAMP domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	1.4e-55	43.7
WP_012952041.1\|2616446_2617124_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.4e-58	48.0
WP_031645144.1\|2617170_2617956_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_003723285.1\|2618017_2618494_-	DUF1641 domain-containing protein	NA	NA	NA	NA
WP_061110781.1\|2618493_2621481_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_039120529.1\|2621978_2622821_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA
WP_003733258.1\|2622868_2624350_-	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_061110782.1\|2624450_2625338_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_061110783.1\|2625436_2626084_-	hypothetical protein	NA	NA	NA	NA
WP_061110784.1\|2626099_2626636_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003731277.1\|2627515_2627749_+	hypothetical protein	A8ATW9	Listeria_phage	4.3e-13	100.0
WP_003731276.1\|2627780_2628032_+	hypothetical protein	A8ATW8	Listeria_phage	2.0e-40	100.0
WP_003722518.1\|2628032_2628482_+	anti-CRISPR protein AcrIIA1	A8ATW7	Listeria_phage	2.4e-76	100.0
WP_003733661.1\|2628506_2629004_+	AP2 domain-containing protein	A8ATW6	Listeria_phage	3.8e-91	100.0
WP_003722520.1\|2629278_2630052_+	DUF3825 domain-containing protein	A8ATW5	Listeria_phage	9.5e-150	100.0
WP_003733663.1\|2630092_2630938_-	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	2.7e-137	94.7
WP_003722522.1\|2630937_2631219_-\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
WP_003722523.1\|2631231_2631597_-	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
WP_105180009.1\|2631635_2633801_-\|tail	phage tail protein	A8ATW1	Listeria_phage	0.0e+00	94.5
WP_023552439.1\|2633813_2635382_-\|tail	phage tail family protein	A8ATW0	Listeria_phage	1.5e-303	99.2
WP_105180010.1\|2635378_2640169_-\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	94.9
WP_072218650.1\|2640173_2640485_-	hypothetical protein	A0A0B5D116	Listeria_phage	1.2e-42	98.9
WP_061128873.1\|2640481_2640913_-	hypothetical protein	A8ATV7	Listeria_phage	1.1e-70	95.8
WP_060595907.1\|2640968_2641655_-	Ig domain-containing protein	A8ATV6	Listeria_phage	3.4e-114	97.4
WP_069015707.1\|2641659_2642031_-	hypothetical protein	A0A0B5CTY4	Listeria_phage	3.6e-62	97.6
WP_039154123.1\|2642027_2642345_-	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	1.9e-51	98.1
WP_069015705.1\|2642334_2642700_-	hypothetical protein	A8ATV3	Listeria_phage	2.4e-63	97.5
WP_012951937.1\|2642699_2643053_-	hypothetical protein	A8ATV2	Listeria_phage	7.6e-62	100.0
WP_173677881.1\|2643053_2643221_-	hypothetical protein	A8ATV1	Listeria_phage	1.7e-11	100.0
WP_031659979.1\|2643240_2644113_-	hypothetical protein	A8ATV0	Listeria_phage	3.6e-161	99.3
WP_031672306.1\|2644135_2644690_-	hypothetical protein	A8ATU9	Listeria_phage	1.5e-85	97.3
WP_046670972.1\|2644785_2645829_-	hypothetical protein	A0A0B5D111	Listeria_phage	2.6e-198	98.6
WP_069015704.1\|2645833_2647390_-	hypothetical protein	A8ATU7	Listeria_phage	5.0e-299	99.0
WP_069015703.1\|2647404_2648733_-\|terminase	PBSX family phage terminase large subunit	A8ATU6	Listeria_phage	2.4e-233	87.5
WP_069015702.1\|2648662_2649448_-	TerS	A0A0B5CTX0	Listeria_phage	3.2e-129	96.7
WP_012951944.1\|2649487_2649715_-	hypothetical protein	A8AU06	Listeria_phage	1.5e-34	100.0
WP_031670269.1\|2649795_2650428_-	hypothetical protein	A8AU05	Listeria_phage	4.0e-114	99.0
WP_003727777.1\|2650609_2651044_-	hypothetical protein	A8ASQ1	Listeria_phage	8.1e-74	97.9
WP_061665002.1\|2651062_2651227_-	hypothetical protein	A8ASQ0	Listeria_phage	5.7e-20	92.6
WP_009924217.1\|2651355_2651739_-	DUF2481 family protein	A0A0B5CYS3	Listeria_phage	2.0e-63	97.6
WP_069015700.1\|2651742_2652147_-	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	2.1e-60	88.8
WP_031645649.1\|2652091_2652274_-	hypothetical protein	A8ASP6	Listeria_phage	1.5e-18	82.5
WP_069015698.1\|2652292_2652775_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	6.7e-77	92.5
WP_069015696.1\|2652771_2653095_-	hypothetical protein	A8ATZ5	Listeria_phage	2.0e-08	89.7
WP_061684869.1\|2653094_2653283_-	hypothetical protein	NA	NA	NA	NA
WP_158667497.1\|2653482_2653641_-	hypothetical protein	A0A059T654	Listeria_phage	1.7e-21	92.3
WP_069001126.1\|2653667_2653958_-	hypothetical protein	Q8W5X0	Listeria_phage	1.1e-42	88.5
WP_069015693.1\|2654016_2654385_-	hypothetical protein	A8ASN9	Listeria_phage	1.1e-60	91.8
WP_069015691.1\|2654381_2654945_-	DUF1642 domain-containing protein	A8ATY9	Listeria_phage	3.7e-42	50.8
WP_070004445.1\|2654941_2656255_-	DNA (cytosine-5-)-methyltransferase	A0A141E1L1	Streptococcus_phage	1.1e-129	57.1
WP_058876466.1\|2656251_2657166_-	DnaD domain-containing protein	A0A0B5D175	Listeria_phage	8.1e-140	90.5
WP_058876465.1\|2657203_2658115_-	recombinase RecT	NA	NA	NA	NA
WP_069015687.1\|2658107_2659619_-	ATPase	A0A2I7SC81	Paenibacillus_phage	2.7e-76	36.2
WP_003722564.1\|2659925_2660114_-	hypothetical protein	Q9T175	Listeria_phage	1.8e-22	82.3
WP_003733681.1\|2660216_2660423_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_069015683.1\|2660412_2660943_-	hypothetical protein	A0A0B5D173	Listeria_phage	6.7e-78	88.4
WP_069015681.1\|2661066_2661846_-	phage antirepressor KilAC domain-containing protein	A0A0B5CTU1	Listeria_phage	5.8e-139	96.5
WP_069015680.1\|2661858_2662134_-	hypothetical protein	A8ASM5	Listeria_phage	4.9e-40	85.1
WP_069015679.1\|2662130_2662367_-	hypothetical protein	A0A059T5E9	Listeria_phage	8.1e-36	96.2
WP_026747215.1\|2662387_2662591_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_039381694.1\|2662766_2663072_+	helix-turn-helix transcriptional regulator	A0A059T669	Listeria_phage	4.0e-27	64.3
WP_012951966.1\|2663102_2663594_+	hypothetical protein	A8ATX4	Listeria_phage	2.9e-91	99.4
WP_003724017.1\|2663849_2664455_+	hypothetical protein	NA	NA	NA	NA
WP_003724018.1\|2664517_2665681_+\|integrase	site-specific integrase	S5MNZ2	Brevibacillus_phage	4.4e-50	31.2
2672357:2672372	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2828639 : 2838671

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045131647.1\|2828639_2830793_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	1.7e-42	34.1
WP_003732117.1\|2830816_2832589_-	DNA helicase RecQ	A0A2K9L3P7	Tupanvirus	6.3e-80	37.1
WP_003722118.1\|2832749_2834216_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.0e-97	40.0
WP_003728635.1\|2834503_2835034_-	ADP-ribose-binding protein	A0A0K1L687	Scale_drop_disease_virus	1.7e-28	49.3
WP_046335726.1\|2835091_2836702_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.3e-47	29.7
WP_072215787.1\|2836880_2837189_+	hypothetical protein	NA	NA	NA	NA
WP_061110792.1\|2837216_2838671_+	glycoside hydrolase family 1 protein	A0A0B5JD41	Pandoravirus	7.3e-50	30.1

Anti-CRISPR protein detection

Acr_ID: NZ_LT985476.1|WP_003731276.1|2627780_2628032_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_LT985476.1|WP_069015680.1|2661858_2662134_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_LT985476.1|WP_069015679.1|2662130_2662367_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_LT985476.1|WP_003731276.1|2627780_2628032_+|hypothetical-protein

2627780_2628032_+

83 aa aa

AcrIIA12

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3641\|WP_003731276.1\|AcrIIA12\|II-A\|Verified\|Listeria-monocytogenes	1.0	1	1.0

2593657-2665681

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_LT985476_1	Unclear	1.1\|546509\|35\|NZ_LT985476\|CRT	546509-546543	35	2632459-2632493	1
NZ_LT985476_2	Unclear	2.7\|562570\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562570-562604	35	2649448-2649482	0
NZ_LT985476_2	Unclear	2.18\|563287\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	563287-563321	35	2661138-2661104	0

1. spacer 1.1|546509|35|NZ_LT985476|CRT matches to NZ_LT985476 position: 2632459-2632493, mismatch: 1

taaaaaggtttattgttatcaccagctttcattaa	CRISPR spacer
taaaaaggcttattgttatcaccagctttcattaa	Protospacer
********.**************************

2. spacer 2.7|562570|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT985476 position: 2649448-2649482, mismatch: 0

ctcacttccaccacctcgcattctgtgtttgtttc	CRISPR spacer
ctcacttccaccacctcgcattctgtgtttgtttc	Protospacer
***********************************

3. spacer 2.18|563287|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT985476 position: 2661138-2661104, mismatch: 0

caagtaacaggaaaaggacaagtatatctattaaa	CRISPR spacer
caagtaacaggaaaaggacaagtatatctattaaa	Protospacer
***********************************

NZ_LT985476.1|WP_069015680.1|2661858_2662134_-|hypothetical-protein

2661858_2662134_-

91 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.4827586206896552	1.0

2593657-2665681

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_LT985476_1	Unclear	1.1\|546509\|35\|NZ_LT985476\|CRT	546509-546543	35	2632459-2632493	1
NZ_LT985476_2	Unclear	2.7\|562570\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562570-562604	35	2649448-2649482	0
NZ_LT985476_2	Unclear	2.18\|563287\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	563287-563321	35	2661138-2661104	0

1. spacer 1.1|546509|35|NZ_LT985476|CRT matches to NZ_LT985476 position: 2632459-2632493, mismatch: 1

taaaaaggtttattgttatcaccagctttcattaa	CRISPR spacer
taaaaaggcttattgttatcaccagctttcattaa	Protospacer
********.**************************

2. spacer 2.7|562570|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT985476 position: 2649448-2649482, mismatch: 0

ctcacttccaccacctcgcattctgtgtttgtttc	CRISPR spacer
ctcacttccaccacctcgcattctgtgtttgtttc	Protospacer
***********************************

3. spacer 2.18|563287|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT985476 position: 2661138-2661104, mismatch: 0

caagtaacaggaaaaggacaagtatatctattaaa	CRISPR spacer
caagtaacaggaaaaggacaagtatatctattaaa	Protospacer
***********************************

NZ_LT985476.1|WP_069015679.1|2662130_2662367_-|hypothetical-protein

2662130_2662367_-

78 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.4827586206896552	1.0

2593657-2665681

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_LT985476_1	Unclear	1.1\|546509\|35\|NZ_LT985476\|CRT	546509-546543	35	2632459-2632493	1
NZ_LT985476_2	Unclear	2.7\|562570\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	562570-562604	35	2649448-2649482	0
NZ_LT985476_2	Unclear	2.18\|563287\|35\|NZ_LT985476\|PILER-CR,CRISPRCasFinder,CRT	563287-563321	35	2661138-2661104	0

1. spacer 1.1|546509|35|NZ_LT985476|CRT matches to NZ_LT985476 position: 2632459-2632493, mismatch: 1

taaaaaggtttattgttatcaccagctttcattaa	CRISPR spacer
taaaaaggcttattgttatcaccagctttcattaa	Protospacer
********.**************************

2. spacer 2.7|562570|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT985476 position: 2649448-2649482, mismatch: 0

ctcacttccaccacctcgcattctgtgtttgtttc	CRISPR spacer
ctcacttccaccacctcgcattctgtgtttgtttc	Protospacer
***********************************

3. spacer 2.18|563287|35|NZ_LT985476|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT985476 position: 2661138-2661104, mismatch: 0

caagtaacaggaaaaggacaagtatatctattaaa	CRISPR spacer
caagtaacaggaaaaggacaagtatatctattaaa	Protospacer
***********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT985476

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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