CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_APIH01000001	Listeria monocytogenes SHL008 contig1, whole genome shotgun sequence	1 crisprs	cas6,cas8b2,cas7,cas5,cas3,cas2	1	14	1	0
NZ_APIH01000017	Listeria monocytogenes SHL008 contig18, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIH01000002	Listeria monocytogenes SHL008 contig2, whole genome shotgun sequence	0 crisprs	cas3,DEDDh	0	0	1	0
NZ_APIH01000005	Listeria monocytogenes SHL008 contig5, whole genome shotgun sequence	0 crisprs	DinG	0	0	0	0
NZ_APIH01000007	Listeria monocytogenes SHL008 contig7, whole genome shotgun sequence	0 crisprs	WYL,csa3	0	0	1	0
NZ_APIH01000023	Listeria monocytogenes SHL008 contig25, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIH01000003	Listeria monocytogenes SHL008 contig3, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIH01000015	Listeria monocytogenes SHL008 contig15, whole genome shotgun sequence	1 crisprs	NA	0	0	0	0
NZ_APIH01000011	Listeria monocytogenes SHL008 contig11, whole genome shotgun sequence	0 crisprs	NA	0	0	1	3
NZ_APIH01000020	Listeria monocytogenes SHL008 contig22, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIH01000014	Listeria monocytogenes SHL008 contig14, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIH01000016	Listeria monocytogenes SHL008 contig16, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIH01000019	Listeria monocytogenes SHL008 contig20, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIH01000012	Listeria monocytogenes SHL008 contig12, whole genome shotgun sequence	0 crisprs	csa3	0	0	0	0
NZ_APIH01000018	Listeria monocytogenes SHL008 contig19, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIH01000013	Listeria monocytogenes SHL008 contig13, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIH01000009	Listeria monocytogenes SHL008 contig9, whole genome shotgun sequence	0 crisprs	casR,WYL	0	0	0	0
NZ_APIH01000021	Listeria monocytogenes SHL008 contig23, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIH01000008	Listeria monocytogenes SHL008 contig8, whole genome shotgun sequence	0 crisprs	NA	0	0	2	0
NZ_APIH01000024	Listeria monocytogenes SHL008 contig26, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIH01000006	Listeria monocytogenes SHL008 contig6, whole genome shotgun sequence	1 crisprs	cas9,cas1,cas2,csn2	0	8	0	0
NZ_APIH01000022	Listeria monocytogenes SHL008 contig24, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIH01000004	Listeria monocytogenes SHL008 contig4, whole genome shotgun sequence	1 crisprs	csa3,DinG,cas3	0	0	1	0
NZ_APIH01000010	Listeria monocytogenes SHL008 contig10, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_APIH01000001_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_APIH01000001_1

50265-51602

Unclear

I-A

Consensus_repeat	Method
GTTTTAACTACTTATTATGAAATGTAAATATTA	PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	CRISPRCasFinder
GTTTTAANNNCTACTTATTATGAAATGTAAAT	CRT
GTTTTAACTACTTATTATGAAATGTAAAT	PILER-CR

20 spacers

cas2,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NZ_APIH01000001_1

>merge|NZ_APIH01000001|1|50265-51602|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTTAACTACTTATTATGAAATGTAAATCAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGCGTTTTAACTACTTATTATGAAATGTAAATATTACAGTACAAGCAAGGGTTATTGAGTTAAATATTGTTTTAACTACTTATTATGAAATGTAAATATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGGGTTTTAACTACTTATTATGAAATGTAAATTCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAGGTTTTAACTACTACTTATTATGAAATGTAAATTCGTTTATGACCTTATGAAAGAGTTAACACCTCGACGTTTTAACTACTTATTATGAAATGTAAATCTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTGGTTTTAACTACTTATTATGAAATGAAAAAAAAAATAAATAAGTTCAAAACCTCCCACACCCGCTATGAATAAATTGTTTTAACTACTTATTATGAAATGTAAATTTCGTAATTTTACGATTATACTTTTTAGTCAAATTACGTTTTAACTACTTATTATGAAATGTAAATGTAACAAGTAGTGTTATACCTGCAACAATACCAGTGTTTTAACTACTTATTATGAAATGTAAATTGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAGGTTTTAACTACTTATTATGAAATGTAAATGTCCACATCGACAATAAAAAACACATTGTATCACTTGTTTTAACTACTTATTATGAAATGTAAATCTGGTTACTCAACTGGCGACAGTAATACACCTCAATGTTTTAACTACTTATTATGAAATGTAAATTTTGGATAGGTTGTTTCTGATAAATAGGTTCACGGTTTTAACTACTTATTATGAAATGTAAATAGAAAAAAAACATCTTTCCAATTTGTTGTTTTGCGTTTTAACTACTTATTATGAAATGTAAATACAAGTGCTAGAACAGAAGTTATAATTTGAACATTACGTTTTAACTACTTATTATGAAATGTAAATAGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTAGTTTTAACTACTTATTATGAAATGTAAATTATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGAGTTTTAACTACTTATTATGAAATGTAAATAAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGGGTTTTAACTACTTATTATGAAATGTAAATGTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTTGTTTTAACTACTTATTATGAAATGTAAATTTTTGAAATATGAGGACTTAGAAAATGAAAAAAATGTTTTAACTACTTATTATGAAATCATAAA

>NZ_APIH01000001|1|1|50265-50429|PILER-CR
GTTTTAACTACTTATTATGAAATGTAAATCAATG	CTTAAACCGAGAGCATCAAATTGTTCCCATGCGTTTT
AACTACTTATTATGAAATGTAAATATTACAGTAC	AAGCAAGGGTTATTGAGTTAAATATTGTTTTA
ACTACTTATTATGAAATGTAAATATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGGGTTTTAACTACTTATTATGAAATGTAAATTCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAGGTTTTAACTACTACTTATTATGAAATGTAAATTCGTTTATGACCTTATGAAAGAGTTAACACCTCGACGTTTTAACTACTTATTATGAAATGTAAATCTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTGGTTTTAACTACTTATTATGAAATGAAAAAAAAAATAAATAAGTTCAAAACCTCCCACACCCGCTATGAATAAATTGTTTTAACTACTTATTATGAAATGTAAAT	TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC
GTTTTAACTACTTATTATGAAATGTAAAT	GTAACAAGTAGTGTTATACCTGCAACAATACCAGT
GTTTTAACTACTTATTATGAAATGTAAAT	TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT


>NZ_APIH01000001|1|1|50265-51602|CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC
GTTTTAACTACTTATTATGAAATGTAAAT	ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT
GTTTTAACTACTTATTATGAAATGTAAAT	ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG
GTTTTAACTACTTATTATGAAATGTAAAT	TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAGGTT
TTAACTACTACTTATTATGAAATGTAAAT	TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC
GTTTTAACTACTTATTATGAAATGTAAAT	CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG
GTTTTAACTACTTATTATGAAATGAAAAA	AAAAATAAATAAGTTCAAAACCTCCCACACCCGCTATGAATAAATT
GTTTTAACTACTTATTATGAAATGTAAAT	TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC
GTTTTAACTACTTATTATGAAATGTAAAT	GTAACAAGTAGTGTTATACCTGCAACAATACCAGT
GTTTTAACTACTTATTATGAAATGTAAAT	TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATCATAAA

>NZ_APIH01000001|1|1|50265-51602|CRT
GTTTTAACTACTTATTATGAAATGTAAAT	CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC
GTTTTAACTACTTATTATGAAATGTAAAT	ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT
GTTTTAACTACTTATTATGAAATGTAAAT	ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG
GTTTTAACTACTTATTATGAAATGTAAAT	TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG
GTTTTAACTACTACTTATTATGAAATGTA	AATTCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC
GTTTTAACTACTTATTATGAAATGTAAAT	CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG
GTTTTAACTACTTATTATGAAATGAAAAA	AAAAATAAATAAGTTCAAAACCTCCCACACCCGCTATGAATAAATT
GTTTTAACTACTTATTATGAAATGTAAAT	TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC
GTTTTAACTACTTATTATGAAATGTAAAT	GTAACAAGTAGTGTTATACCTGCAACAATACCAGT
GTTTTAACTACTTATTATGAAATGTAAAT	TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATCATAAA

>NZ_APIH01000001|1|2|50734-51538|PILER-CR
	CTTAAACCGAGAGCATCAAATTGTTCCCATGCGTTTT
AACTACTTATTATGAAATGTAAATATTACAGTAC	AAGCAAGGGTTATTGAGTTAAATATTGTTTTA
ACTACTTATTATGAAATGTAAATATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGGGTTTTAACTACTTATTATGAAATGTAAATTCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAGGTTTTAACTACTACTTATTATGAAATGTAAATTCGTTTATGACCTTATGAAAGAGTTAACACCTCGACGTTTTAACTACTTATTATGAAATGTAAATCTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTGGTTTTAACTACTTATTATGAAATGAAAAAAAAAATAAATAAGTTCAAAACCTCCCACACCCGCTATGAATAAATTGTTTTAACTACTTATTATGAAATGTAAAT	TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC
GTTTTAACTACTTATTATGAAATGTAAAT	GTAACAAGTAGTGTTATACCTGCAACAATACCAGT
GTTTTAACTACTTATTATGAAATGTAAAT	TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCCACATCGACAATAAAAAACACATTGTATCACTT
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT
GTTTTAACTACTTATTATGAAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_APIH01000001.1\|WP_003731269.1\|60409_61885_+\|hypothetical-protein	unknown	unknown	unknown
NZ_APIH01000001.1\|WP_072217746.1\|53735_54740_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_APIH01000001.1\|WP_003731261.1\|45599_46469_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NZ_APIH01000001.1\|WP_003726690.1\|56290_57043_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_APIH01000001.1\|WP_003731267.1\|57638_59300_-\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_APIH01000001.1\|WP_003726689.1\|54772_56089_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NZ_APIH01000001.1\|WP_003721310.1\|49788_50067_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_APIH01000001.1\|WP_003731259.1\|43183_43906_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_APIH01000001.1\|WP_003731270.1\|61877_63374_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227617
NZ_APIH01000001.1\|WP_003731263.1\|47296_49486_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_APIH01000001.1\|WP_003727298.1\|40464_41895_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_APIH01000001.1\|WP_003727295.1\|52188_53604_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_APIH01000001.1\|WP_003731268.1\|59439_60180_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_APIH01000001.1\|WP_003731262.1\|46446_47229_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NZ_APIH01000001.1\|WP_003727299.1\|38056_39886_+\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NZ_APIH01000001.1\|WP_003721301.1\|39986_40418_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_APIH01000001.1\|WP_003731264.1\|51674_52043_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NZ_APIH01000001.1\|WP_003727297.1\|42015_42831_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_APIH01000001.1\|WP_003731260.1\|43921_45610_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NZ_APIH01000001.1\|WP_003731266.1\|57149_57593_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_APIH01000001.1\|WP_072217746.1\|53735_54740_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	5.54874e-21
NZ_APIH01000001.1\|WP_003731261.1\|45599_46469_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	3.68641e-55
NZ_APIH01000001.1\|WP_003726690.1\|56290_57043_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	7.01666e-64
NZ_APIH01000001.1\|WP_003731267.1\|57638_59300_-\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	7.67986e-148
NZ_APIH01000001.1\|WP_003726689.1\|54772_56089_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_APIH01000001.1\|WP_003721310.1\|49788_50067_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.1393e-30
NZ_APIH01000001.1\|WP_003731259.1\|43183_43906_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.25848e-32
NZ_APIH01000001.1\|WP_003731270.1\|61877_63374_+\|hypothetical-protein	gnl\|CDD\|227617	COG5298, COG5298, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_APIH01000001.1\|WP_003731263.1\|47296_49486_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	9.60751e-60
NZ_APIH01000001.1\|WP_003727298.1\|40464_41895_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	2.66378e-99
NZ_APIH01000001.1\|WP_003727295.1\|52188_53604_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.97112e-80
NZ_APIH01000001.1\|WP_003731268.1\|59439_60180_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	9.74e-52
NZ_APIH01000001.1\|WP_003731262.1\|46446_47229_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	3.98256e-24
NZ_APIH01000001.1\|WP_003727299.1\|38056_39886_+\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	2.70695e-122
NZ_APIH01000001.1\|WP_003721301.1\|39986_40418_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NZ_APIH01000001.1\|WP_003731264.1\|51674_52043_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	1.68051e-41
NZ_APIH01000001.1\|WP_003727297.1\|42015_42831_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	4.22926e-50
NZ_APIH01000001.1\|WP_003731260.1\|43921_45610_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	3.08159e-26

>NZ_APIH01000001.1|WP_003721310.1|49788_50067_+|CRISPR-associated-endonuclease-Cas2
MYVILIYDISIENGGAKVWRNVFKICKKYLTHVQKSVFEGEITPALLVKLRMELDKYIRDDQDSVIVFSSRQQRWLEKEFWGLTDEKTSNFF
>NZ_APIH01000001.1|WP_003731263.1|47296_49486_+|CRISPR-associated-helicase/endonuclease-Cas3
MQKYLAKSNPEETIQEHTDNLLKNYQRLKKLYPAVEIDWYLLELVCLLHDLGKMNLLFQTKLGNASGKGKEIPHGYLSVAFVPDSKLEEMGYSEDEIKVVYQAIARHHERKYDFSDSEWKKEIIKLEEQWAGFIYSQLGENAEYSSEVEMLYFYPGSRIFEGNSAADAETFKKYVLLKGLLNRIDFAASGGIDVELENDFLMDSMEVQLAHFKAENPEADWNALQKYMMQHQNENIVVIAETGMGKTEAGLLWLGNNKGFFTLPLRAAINAIYERITKNIVTTNQAERVGLLHSETYSQYLLHEGNAEMDIDEYYTRTRQMSLPITICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLILGLSYIDKFGGKFCIMTATLPGIVTDLLLENGVDFVQPEEKFVSSRIRHSMEMVHTEVESEFIKPFFNNNRILVICNTISKAKKIYSELKEHFQGEEIHLIHSQFIKRDRSAKEKAIFEDGQKDSTKKCIWVATQVVEASLDIDFDLLFTELSDVNGLFQRMGRCYRNRRLDVDTNVYVFDGGAKVCSGVGIDNFIDKLIFENSKTILNEHAGVLTEEKKMELVEQVYSTEALSGSKFYKELIRTINYVKAFESYLMNKADVRRRFRNINSVSVIPEEVWQDNAEEINSYFVTLRKTSKEISTKEKIIARTNLAEFMVSIPDYLYKKGESVVREINRYESVIEFKCGYSSDVGVFMR
>NZ_APIH01000001.1|WP_003731262.1|46446_47229_+|type-I-B-CRISPR-associated-protein-Cas5
MLIMKAIRVKLWQDLVNFKKPTSFQLKETYPLPPYSTVIGMVHTLCGFTSYHEMKISIQGKYFSKVNDLATRYEFKNGMTYDASRHQIKVDKYGVSRGVSTVELLVDLELLLHIIPEDPSLVPIIEKAFREPIEFPSLGRREDIATIQKVEVVDVEKRQPKKSTEISDGYNAYVPISLTENNSVHFKSHESSVGRDKLLGTRYLLTEKYERVNHGTEKAPKFFRKWRKKDVIYSSRIFVSKKDVFFFDEDDYLVFIEEEE
>NZ_APIH01000001.1|WP_003731261.1|45599_46469_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIIFQAESANYGESLGNISSLKKISRNNGDQYTYISRQAIRYNLMDQIGEKEAPVKAEGGGDKKVIQFLSEATITDFPELDFFGYLKTEKGSGGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKLNENMNIAQAEIHKSYYRYTMTIDLDQIGIDGEIALENKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNVVDVADNNIVIKNIKDLLTYEDIKENTRVGIIDGQFANSDEVKAELKAESVPAFFNDIKGKIDAYYESN
>NZ_APIH01000001.1|WP_003731260.1|43921_45610_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MRTEIEVRANDWLINAGLIGFLNIVGKENVRIDGQSIYFTADLLEDFETKYFNFFIQEFKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKVNYIKVFPLIDPSANVTKWLENLNTINLTKKQRWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLFKQTKFIDPYLDYKTTFVDSVLDYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTSHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILSFNQDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKGLIRCGYKEGNLNVNLYKEVLQHLMNNENLFTLIHKLIYYKQTSVNGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLAMPIPDVFIKMFSDNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK
>NZ_APIH01000001.1|WP_003731259.1|43183_43906_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIIPKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKGAEIQLNEANCIINFSTGDAETGIIFYNALISLRGSKILFGAGNNITIKNIQIVPEKKIIGNRTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLIDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGLGTMTGSGFGMIEQL
>NZ_APIH01000001.1|WP_003727297.1|42015_42831_-|histidine-phosphatase-family-protein
MKKNIFKLMMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGISPKDFADSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_APIH01000001.1|WP_003727298.1|40464_41895_-|CapA-family-protein
MKRRTYVIITGLVLIFVAGAFWITNSTNQSDQKATQTEPLKKTSPANVKTISSEAKKTLNSLASSGADKASISDLNQLIKELKSYPVEKNDSGAYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKENTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_APIH01000001.1|WP_003721301.1|39986_40418_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_APIH01000001.1|WP_003727299.1|38056_39886_+|lmo0514-family-class-1-internalin
MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSISGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSARLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMNSYTISSGTYDQYFDISHTLDLTADESFDYNQYDATSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITADSQISYKKESTKSVDEFLQEIHSSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDGGHVNPVPPTPEVKPTPQEETDPTIIPEPQSENSEDPVKENNAKTEEKANKTSLTTKENKVEKADKAEKTNQPKTKALPQTGDTNKSTLPIAGVMLSLAALLIFRKSKS
>NZ_APIH01000001.1|WP_003731264.1|51674_52043_-|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTNLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGMAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVVVLLV
>NZ_APIH01000001.1|WP_003727295.1|52188_53604_+|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK
>NZ_APIH01000001.1|WP_072217746.1|53735_54740_+|ROK-family-transcriptional-regulator
MAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKLIRDLVENDEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLLGEPEFVEDMSGEDLDITALKRNTKDLVCAFPKISCVVIGVPGIEIGGKLRAMDFPLLLNVQLRETLEAEVNLPVLVETDTNAAILGYKNRPVKEENIVGLYYPERFPPGAGLLMNGEILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMVLLTMSFYDPETIVLYTNFYFGQKDFTEELTEELKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI
>NZ_APIH01000001.1|WP_003726689.1|54772_56089_-|6-phospho-beta-glucosidase
MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAGREKLEIVGNLAKRMVEKAGVDMEVHLTLDREEALKDADFVTTQLRVGLLDARVKDERIPNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVLRYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTKDVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAEHGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQIVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAEAAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK
>NZ_APIH01000001.1|WP_003726690.1|56290_57043_+|MurR/RpiR-family-transcriptional-regulator
MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVSTTTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQIQNAVEILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLSDKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEMYQEANITSQLPALYTIENIAREIRTQIDKEKM
>NZ_APIH01000001.1|WP_003731266.1|57149_57593_+|hypothetical-protein
MYSNRKEKVVFTLIMCSLMILCMSSYNIFLENGIGANSFMIILKAFVPFLFIGFLLDFFVVGKIVYRLHAHLVSEDASKFKKIIMMQLLMVTFMCVLMSTLSLIVNQGEWSHLGILILRNYFVALFLQIFIVSPFVRLISPRIFALL
>NZ_APIH01000001.1|WP_003731267.1|57638_59300_-|SulP-family-inorganic-anion-transporter
MFKHILLSLNGYKISYLRNDVISGVGVAALTIPVAMGYAQVAGLPPIYGLYASFLPVIAYVIFASSPQLVFGIDATASAITGSIILGTAGLAAGSKEAIALAPILAFFCAIFLVLFSVLKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGDSFFSSLGIIFGQFFQSNWISFAMGVVTVIIVITCKKVIPKIPMSLVVLILGTMAAYFFKLDQYNVDIVGKIPVGFPSLALPDFGASSWALAIGGGLVCAIATFAGSLLPSESFAMRNKYTIDDNRELFAYGISNFVAAFSGCSPASASVSRTAANEQFRGKTQMVSIVAATIIALIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKVSRREATVWIVAALGTLLVGVIFGVLLGIFLSFINVVSRSMKSPIAILGVIEGRHGYFDLKRKPEAKPIPNVVIYRYSASLFFGNFNKFADGLKEAVQDDTKLVIFEASAIINIDTTATESMKDLLKWLDDKGIEYYFADLIDHLKTSFRKHDLGYIIDNGYTKKTVEDALEAYYAEHK
>NZ_APIH01000001.1|WP_003731268.1|59439_60180_-|MerR-family-transcriptional-regulator
MQIKELAELTGVSVRTLHHYDKIGLLVPQKDDRNGYRIYSENDVDKLQQILFFKELDFPLKKIKQILDDPFFDKNVALDLQRHLLIEKKQRIETMLATLDQTIRNEKGEITMTNKEKFTGFDFSTNPYEEEAKKRWGDKVVEKANEKVNNMNEKEKLTLKESFDAEFRHLASVRELSPESEEAQLAIDHFFHYLNDTHGNIYSLEAFADLGEMYVADERFTKNIDQFGDGLSHFLKEAMNIYAKNK
>NZ_APIH01000001.1|WP_003731269.1|60409_61885_+|hypothetical-protein
MIGKVKSISMWLWHHLTPQIFAVICVFIITLIALFMPPYIGMADNGDFFRIFSSNGLFVNNTNYDALQFGHFVKEFGIYQYFNENQVAIYSSQSIFIQMALLLNKLFWSTTVFDVRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYVVAALTVFIFADTAYTAYFNSFFSEGLILIMMLYISAGFLLLYQHKYNDYAMLGLIFVASLILITAKQQNAPIAVVIAVCGILVFFIRKNRAFRISAAATFFVIFLSGVVMYAFIPGEFVTINQYQTMTRGVLLDSENPEKSLEEMGMNSEFALLKGTNFYQKYKMIDLDSKLMEKEFYPNYNFVTVLSYYLENPKQFGKMLDLSAQNSFSIRPFEMGNFEKATGYKFKEKTHFFSIYSDVKEKLAPAKFTFLILWALVFLICYGVSAFKHFREKNIRGMLLFDLVVLLIGSGFAVILVTIVGDGEADLTKHNFLFNVCFDLTMLIGAASLLEVYMKKRGERNA
>NZ_APIH01000001.1|WP_003731270.1|61877_63374_+|hypothetical-protein
MRKKLIVSILLAFMIFVVGGHSAIAKSDDGVVVFYDSLATGTENEGNMDALLRMLNSLGKRVTIYSWEENPDLSQTSEIIVLQNKKDGLSNKWTNKLAKSKAKIAYIGGNPPTFLTDKLQLKTKAITEASITIQTQAGLSGKPQLVNETNLITSYKGTSFGEMDAAENGQAAYGVQAGNYAYAPLFQADNTSEFALMDVLKALFDIKTTTNQYAFITGVNPFIDFDLLKKTADTFYEKGIPFIVSAGPVFYNQDFQAARNYAEILRYVQAKNGTIMMNVPAVTYGDSPAGELEKIMQKSVHFFAENDVAPLGVTAELYWNFDKVYGVEGFAPFNTGILLPNQKIIHTTKVNNGSAFEKSPYSVANDFYATTTEGRNFPIDIAITYSFFDNEKELKAAAEELATDNISDFRFQDHGVKTNKDTIESSAGSLYINNQSVTLDGDLNYIKTKNKTVKQAGSLEGFFGYQNTFFTIVIVLSLGIIGVLFVFGYRLYMKKYMK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_APIH01000001_1	1.14\|51023\|36\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	51023-51058	36	NZ_APIH01000011.1	36294-36329	1	0.972

1. spacer 1.14|51023|36|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to position: 36294-36329, mismatch: 1, identity: 0.972

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggtgacagtaatacacctcaat	Protospacer
****************.*******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_APIH01000001_1	1.2\|50370\|32\|NZ_APIH01000001\|PILER-CR	50370-50401	32	DQ003642	Listeria phage A006, complete genome	16676-16707	0	1.0
NZ_APIH01000001_1	1.4\|50360\|36\|NZ_APIH01000001\|CRISPRCasFinder,CRT	50360-50395	36	DQ003642	Listeria phage A006, complete genome	16672-16707	0	1.0
NZ_APIH01000001_1	1.5\|50425\|35\|NZ_APIH01000001\|CRISPRCasFinder,CRT	50425-50459	35	MH341453	Listeria phage PSU-VKH-LP041, complete genome	31167-31201	0	1.0
NZ_APIH01000001_1	1.14\|51023\|36\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	51023-51058	36	NC_003216	Listeria phage A118, complete genome	18563-18598	0	1.0
NZ_APIH01000001_1	1.14\|51023\|36\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	51023-51058	36	AJ242593	Bacteriophage A118 complete genome	18563-18598	0	1.0
NZ_APIH01000001_1	1.18\|51280\|34\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	51280-51313	34	NC_003216	Listeria phage A118, complete genome	19172-19205	0	1.0
NZ_APIH01000001_1	1.18\|51280\|34\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	51280-51313	34	AJ242593	Bacteriophage A118 complete genome	19172-19205	0	1.0
NZ_APIH01000001_1	1.1\|50299\|37\|NZ_APIH01000001\|PILER-CR	50299-50335	37	KJ094023	Listeria phage LP-101, complete genome	9186-9222	1	0.973
NZ_APIH01000001_1	1.3\|50294\|37\|NZ_APIH01000001\|CRISPRCasFinder,CRT	50294-50330	37	KJ094023	Listeria phage LP-101, complete genome	9186-9222	1	0.973
NZ_APIH01000001_1	1.8\|50623\|36\|NZ_APIH01000001\|CRISPRCasFinder,CRT	50623-50658	36	KJ094023	Listeria phage LP-101, complete genome	17910-17945	1	0.972
NZ_APIH01000001_1	1.1\|50299\|37\|NZ_APIH01000001\|PILER-CR	50299-50335	37	MT500540	Listeria phage LP-HM00113468, complete genome	35729-35765	2	0.946
NZ_APIH01000001_1	1.3\|50294\|37\|NZ_APIH01000001\|CRISPRCasFinder,CRT	50294-50330	37	MT500540	Listeria phage LP-HM00113468, complete genome	35729-35765	2	0.946
NZ_APIH01000001_1	1.13\|50958\|36\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	50958-50993	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	26132-26167	2	0.944
NZ_APIH01000001_1	1.19\|51343\|36\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	51343-51378	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	41996-42031	3	0.917
NZ_APIH01000001_1	1.8\|50623\|36\|NZ_APIH01000001\|CRISPRCasFinder,CRT	50623-50658	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	227438-227473	4	0.889
NZ_APIH01000001_1	1.21\|51474\|36\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	51474-51509	36	FW590615	JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME	3844-3879	4	0.889
NZ_APIH01000001_1	1.21\|51474\|36\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	51474-51509	36	HI504184	Sequence 26 from Patent EP2147092	3844-3879	4	0.889
NZ_APIH01000001_1	1.21\|51474\|36\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	51474-51509	36	AJ417489	bacteriophage U153 int gene for U153 integrase	3844-3879	4	0.889
NZ_APIH01000001_1	1.19\|51343\|36\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	51343-51378	36	KJ094023	Listeria phage LP-101, complete genome	32760-32795	5	0.861
NZ_APIH01000001_1	1.16\|51151\|34\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	51151-51184	34	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1764851-1764884	6	0.824
NZ_APIH01000001_1	1.22\|51539\|35\|NZ_APIH01000001\|CRISPRCasFinder,CRT	51539-51573	35	MN694189	Marine virus AFVG_250M578, complete genome	47879-47913	6	0.829
NZ_APIH01000001_1	1.9\|50688\|46\|NZ_APIH01000001\|CRISPRCasFinder,CRT	50688-50733	46	KJ094023	Listeria phage LP-101, complete genome	18341-18386	8	0.826
NZ_APIH01000001_1	1.21\|51474\|36\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	51474-51509	36	NC_019743	Microcoleus sp. PCC 7113 plasmid pMIC7113.08, complete sequence	4997-5032	8	0.778
NZ_APIH01000001_1	1.5\|50425\|35\|NZ_APIH01000001\|CRISPRCasFinder,CRT	50425-50459	35	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	176358-176392	9	0.743
NZ_APIH01000001_1	1.16\|51151\|34\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	51151-51184	34	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	39302-39335	9	0.735
NZ_APIH01000001_1	1.22\|51539\|35\|NZ_APIH01000001\|CRISPRCasFinder,CRT	51539-51573	35	MK448625	Streptococcus satellite phage Javan738, complete genome	5960-5994	9	0.743
NZ_APIH01000001_1	1.22\|51539\|35\|NZ_APIH01000001\|CRISPRCasFinder,CRT	51539-51573	35	MK448449	Streptococcus satellite phage Javan356, complete genome	4490-4524	9	0.743
NZ_APIH01000001_1	1.22\|51539\|35\|NZ_APIH01000001\|CRISPRCasFinder,CRT	51539-51573	35	MK448636	Streptococcus satellite phage Javan749, complete genome	6112-6146	9	0.743
NZ_APIH01000001_1	1.22\|51539\|35\|NZ_APIH01000001\|CRISPRCasFinder,CRT	51539-51573	35	NZ_CP045037	Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence	34734-34768	9	0.743
NZ_APIH01000001_1	1.22\|51539\|35\|NZ_APIH01000001\|CRISPRCasFinder,CRT	51539-51573	35	NZ_CP018177	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence	11325-11359	9	0.743
NZ_APIH01000001_1	1.22\|51539\|35\|NZ_APIH01000001\|CRISPRCasFinder,CRT	51539-51573	35	NZ_CP018181	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence	63608-63642	9	0.743

1. spacer 1.2|50370|32|NZ_APIH01000001|PILER-CR matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

cagtacaagcaagggttattgagttaaatatt	CRISPR spacer
cagtacaagcaagggttattgagttaaatatt	Protospacer
********************************

2. spacer 1.4|50360|36|NZ_APIH01000001|CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

attacagtacaagcaagggttattgagttaaatatt	CRISPR spacer
attacagtacaagcaagggttattgagttaaatatt	Protospacer
************************************

3. spacer 1.5|50425|35|NZ_APIH01000001|CRISPRCasFinder,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 0, identity: 1.0

attaatgataagagcggaaagaaaactttcaaggg	CRISPR spacer
attaatgataagagcggaaagaaaactttcaaggg	Protospacer
***********************************

4. spacer 1.14|51023|36|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

5. spacer 1.14|51023|36|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

6. spacer 1.18|51280|34|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

7. spacer 1.18|51280|34|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

agaagcgttagcggcattgttcgaaagtaattta	CRISPR spacer
agaagcgttagcggcattgttcgaaagtaattta	Protospacer
**********************************

8. spacer 1.1|50299|37|NZ_APIH01000001|PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.973

caatgcttaaaccgagagcatcaaattgttcccatgc	CRISPR spacer
caatgcttaaacctagagcatcaaattgttcccatgc	Protospacer
************* ***********************

9. spacer 1.3|50294|37|NZ_APIH01000001|CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.973

caatgcttaaaccgagagcatcaaattgttcccatgc	CRISPR spacer
caatgcttaaacctagagcatcaaattgttcccatgc	Protospacer
************* ***********************

10. spacer 1.8|50623|36|NZ_APIH01000001|CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.972

cttcctactttttgacataaaaaataagccgagttg	CRISPR spacer
cttcctactttttgacataaaaaataagccgaattg	Protospacer
********************************.***

11. spacer 1.1|50299|37|NZ_APIH01000001|PILER-CR matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 2, identity: 0.946

caatgcttaaaccgagagcatcaaattgttcccatgc	CRISPR spacer
caatgcttaacccaagagcatcaaattgttcccatgc	Protospacer
********** **.***********************

12. spacer 1.3|50294|37|NZ_APIH01000001|CRISPRCasFinder,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 2, identity: 0.946

caatgcttaaaccgagagcatcaaattgttcccatgc	CRISPR spacer
caatgcttaacccaagagcatcaaattgttcccatgc	Protospacer
********** **.***********************

13. spacer 1.13|50958|36|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 2, identity: 0.944

gtccacatcgacaataaaaaacacattgtatcactt	CRISPR spacer
gtccacattgacaacaaaaaacacattgtatcactt	Protospacer
********.*****.*********************

14. spacer 1.19|51343|36|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 3, identity: 0.917

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
tataaaatattgtccaatgtgtggaaggagtttggg	Protospacer
************.********.*************.

15. spacer 1.8|50623|36|NZ_APIH01000001|CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 4, identity: 0.889

cttcctactttttgacataaaaaataagccgagttg	CRISPR spacer
cttcctactttttgacataaaaaataagccttgctc	Protospacer
******************************  *.*

16. spacer 1.21|51474|36|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to FW590615 (JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME) position: , mismatch: 4, identity: 0.889

gtgtaattcttaattccgtattgattcgctagtttt	CRISPR spacer
ttataatccttaattccgtattgatttgctagtttt	Protospacer
 *.****.******************.*********

17. spacer 1.21|51474|36|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to HI504184 (Sequence 26 from Patent EP2147092) position: , mismatch: 4, identity: 0.889

gtgtaattcttaattccgtattgattcgctagtttt	CRISPR spacer
ttataatccttaattccgtattgatttgctagtttt	Protospacer
 *.****.******************.*********

18. spacer 1.21|51474|36|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to AJ417489 (bacteriophage U153 int gene for U153 integrase) position: , mismatch: 4, identity: 0.889

gtgtaattcttaattccgtattgattcgctagtttt	CRISPR spacer
ttataatccttaattccgtattgatttgctagtttt	Protospacer
 *.****.******************.*********

19. spacer 1.19|51343|36|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 5, identity: 0.861

tataaaatattgcccaatgtgcggaaggagtttgga	CRISPR spacer
cattgaattttgcccaatgtgcggaaggagcttgga	Protospacer
.** .*** *********************.*****

20. spacer 1.16|51151|34|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.824

agaaaaaaaacatctttccaatttgttgttttgc	CRISPR spacer
agcaaaaaaacatctttcctatttgttttatcac	Protospacer
** **************** ******* * *..*

21. spacer 1.22|51539|35|NZ_APIH01000001|CRISPRCasFinder,CRT matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 6, identity: 0.829

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
taataaaaaatgagggcttagaaaatgaaaaaatt	Protospacer
*  *.*** ******.***************** *

22. spacer 1.9|50688|46|NZ_APIH01000001|CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 8, identity: 0.826

aaaaataaataagttcaaaacctcccacacccgctatgaataaatt	CRISPR spacer
tcagcttccaaagttcaaaacctcccacacccgctatgaataaatt	Protospacer
  *. *    ************************************

23. spacer 1.21|51474|36|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to NC_019743 (Microcoleus sp. PCC 7113 plasmid pMIC7113.08, complete sequence) position: , mismatch: 8, identity: 0.778

gtgtaattcttaattccgtattgattcgctagtttt---	CRISPR spacer
gtgtaattcttactgccgtattgatt---taactctgaa	Protospacer
************ * ***********   **..*.*

24. spacer 1.5|50425|35|NZ_APIH01000001|CRISPRCasFinder,CRT matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 9, identity: 0.743

attaatgataagagcggaaagaaaactttcaaggg	CRISPR spacer
gaaattaaaaagagagcaaagaaaactttcaagga	Protospacer
.  * *.* ***** * *****************.

25. spacer 1.16|51151|34|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

agaaaaaaaacatctttccaatttgttgttttgc-----	CRISPR spacer
aagaaaaaaacatatttccaatt-----ttttccaaaaa	Protospacer
*..********** *********     **** *

26. spacer 1.22|51539|35|NZ_APIH01000001|CRISPRCasFinder,CRT matches to MK448625 (Streptococcus satellite phage Javan738, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

27. spacer 1.22|51539|35|NZ_APIH01000001|CRISPRCasFinder,CRT matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

28. spacer 1.22|51539|35|NZ_APIH01000001|CRISPRCasFinder,CRT matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtctgaactatgaggacttagaaagtgaagacctg	Protospacer
 *.**** ****************.****.*

29. spacer 1.22|51539|35|NZ_APIH01000001|CRISPRCasFinder,CRT matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

30. spacer 1.22|51539|35|NZ_APIH01000001|CRISPRCasFinder,CRT matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

31. spacer 1.22|51539|35|NZ_APIH01000001|CRISPRCasFinder,CRT matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

614910 : 622332

Hokovirus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003730941.1\|614910_615294_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
WP_003727002.1\|615315_616299_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	2.0e-11	33.8
WP_003727001.1\|616313_617327_+	glycosyltransferase	A0A1V0SAH6	Catovirus	1.8e-10	31.2
WP_003721509.1\|617535_619026_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_003727000.1\|619037_619862_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	9.7e-68	52.6
WP_003724634.1\|619874_620183_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003724635.1\|620242_620647_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_012681222.1\|620775_622332_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.3e-17	28.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_APIH01000008

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2445 : 10731

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003729814.1\|2445_3738_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0
WP_003731571.1\|3818_4532_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	3.9e-41	38.3
WP_003722248.1\|4543_4789_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003726212.1\|4792_5476_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003731570.1\|5468_7688_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.5e-159	40.8
WP_003722245.1\|7672_9100_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_003726210.1\|9118_10168_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.2e-63	44.4
WP_003731569.1\|10164_10731_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	2.8e-26	38.5

DBSCAN-SWA_2

91830 : 122750

Erysipelothrix_phage(70.37%)

terminase,protease,tail,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010821424.1\|91830_92145_+	hypothetical protein	A0A2K5B2A7	Erysipelothrix_phage	6.6e-09	41.5
WP_003731108.1\|92145_93288_+	DUF2800 domain-containing protein	M1Q218	Streptococcus_phage	1.5e-122	57.8
WP_003731109.1\|93289_93832_+	DUF2815 family protein	A0A2K5B2A9	Erysipelothrix_phage	8.9e-78	77.2
WP_003731110.1\|93892_95830_+	DNA polymerase	A0A2K5B2B0	Erysipelothrix_phage	7.7e-265	68.6
WP_014929981.1\|96040_96811_+	phage antirepressor KilAC domain-containing protein	A0A1Q1PVU2	Staphylococcus_phage	2.7e-64	50.8
WP_014929980.1\|96803_97148_+	hypothetical protein	A0A2K5B270	Erysipelothrix_phage	4.1e-28	51.4
WP_003731113.1\|97140_99384_+	primase C-terminal domain-containing protein	A0A1B0RXC5	Streptococcus_phage	4.8e-210	49.7
WP_003731114.1\|99521_99731_+	hypothetical protein	NA	NA	NA	NA
WP_003731115.1\|99727_100012_+	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	3.5e-25	60.2
WP_014929979.1\|100011_101364_+	DEAD/DEAH box helicase	A0A2K5B273	Erysipelothrix_phage	6.8e-159	69.0
WP_003731117.1\|101360_101789_+	DUF1492 domain-containing protein	NA	NA	NA	NA
WP_031641526.1\|101956_102322_+	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	1.4e-31	56.9
WP_031641527.1\|102454_103033_+\|terminase	terminase	A0A2K5B277	Erysipelothrix_phage	1.2e-53	52.8
WP_014929977.1\|103037_103820_+	S-adenosylmethionine synthetase	NA	NA	NA	NA
WP_100066220.1\|104044_104422_+	HNH endonuclease	A0A0B5HE03	Vibrio_phage	4.5e-12	38.8
WP_003731123.1\|104411_105662_+	site-specific DNA-methyltransferase	A0A2I4R670	Erysipelothrix_phage	7.4e-144	62.0
WP_003731124.1\|105750_106140_+	DUF4314 domain-containing protein	E4ZFL7	Streptococcus_phage	3.1e-16	71.0
WP_003731125.1\|106142_106337_+	hypothetical protein	NA	NA	NA	NA
WP_003731126.1\|106311_106509_+	DUF5049 domain-containing protein	NA	NA	NA	NA
WP_003731127.1\|106498_106723_+	hypothetical protein	A0A2K5B284	Erysipelothrix_phage	2.0e-15	48.6
WP_088518322.1\|106783_108376_+\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	7.2e-269	84.8
WP_100066221.1\|108507_108768_+	hypothetical protein	NA	NA	NA	NA
WP_003731131.1\|110072_110846_+\|protease	Clp protease ClpP	M1PLE5	Streptococcus_phage	2.0e-62	55.7
WP_003731132.1\|110849_112067_+\|capsid	phage major capsid protein	A0A2I4R671	Erysipelothrix_phage	1.1e-102	48.0
WP_003731133.1\|112077_112389_+\|head,tail	phage gp6-like head-tail connector protein	A0A2K5B290	Erysipelothrix_phage	2.2e-36	74.0
WP_003731134.1\|112385_112724_+\|head,tail	head-tail adaptor protein	A0A2K5B291	Erysipelothrix_phage	1.7e-23	54.7
WP_003731135.1\|112716_113148_+	HK97 gp10 family phage protein	A0A2K5B292	Erysipelothrix_phage	7.6e-40	59.4
WP_029645088.1\|113174_113483_+	hypothetical protein	A0A2K5B293	Erysipelothrix_phage	1.5e-26	52.0
WP_003731136.1\|113484_114075_+\|tail	phage tail protein	A0A2K5B294	Erysipelothrix_phage	4.1e-76	72.2
WP_003731137.1\|114084_114468_+	hypothetical protein	A0A2K5B295	Erysipelothrix_phage	5.4e-37	64.2
WP_003731138.1\|114719_115364_+	DUF1643 domain-containing protein	NA	NA	NA	NA
WP_003731139.1\|115431_117993_+	hypothetical protein	A0A2K5B297	Erysipelothrix_phage	3.9e-83	74.1
WP_003731140.1\|118008_118701_+	hypothetical protein	A0A1B1P761	Bacillus_phage	5.4e-27	33.2
WP_003731141.1\|118685_122750_+\|tail	phage tail protein	A0A1B1P770	Bacillus_phage	8.7e-85	41.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_APIH01000006

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_APIH01000006_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_APIH01000006_1

237389-238283

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	CRISPRCasFinder
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	CRT
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	PILER-CR

13 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_APIH01000006_1

>merge|NZ_APIH01000006|1|237389-238283|CRISPRCasFinder,CRT,PILER-CR
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAACGCAATAGACCAGTTAGGTGTCACAGGTGCGGTTTTAGAGCTATGTTATTTTGAATGCTACCAAAACGATAGTAGTATAATAACTGTGCTAATATGGGTTTTAGAGCTATGTTATTTTGAATGCTACCAAAACTTCGTACCATAGTATACACATGCAGGGGCGGTTTTAGAGCTATGTTATTTTGAATGCTACCAAAACCATATAGATGTTTCCTTTCTACTCGTATATGTTTTAGAGCTATGTTATTTTGAATGCTACCAAAACAAATATTATTCAATGCTGTAACTGTAAAAGGTTTTAGAGCTATGTTATTTTGAATGCTACCAAAACTACTTTTATTGTCTGCTAAGAATACTACTAGTTTTAGAGCTATGTTATTTTGAATGCTACCAAAACATTGTACAAATTCCAAGTAACTCATCATTAGTTTTAGAGCTATGTTATTTTGAATGCTACCAAAACTTTTTCACGTTTGTACTGTCTCTCCTCGTAGTTTTAGAGCTATGTTATTTTGAATGCTACCAAAACTACGATGTTAAGCGGTGGAGTAGATCAGTAGTTTTAGAGCTATGTTATTTTGAATGCTACCAAAACTATAGTCTGTTTTTTCGTAAGTGAGCAGCGCGTTTTAGAGCTATGTTATTTTGAATGCTACCAAAACTTGGGCAAAATGACCGTAATAAATCCATTCGTTTTAGAGCTATGTTATTTTGAATGCTACCAAAACTTAGCACTTATATAGAAGCCCCGCCCCTACGTTTTAGAGCTATGTTATTTTGAATGCTACCAAAACAGTGATGGGGAAGAGATTGAACTTATGTTTGTTTTAGAGCTATATTATTCTGAATATCAACACACA

>NZ_APIH01000006|1|1|237389-238283|CRISPRCasFinder
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	GCAATAGACCAGTTAGGTGTCACAGGTGCG
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	GATAGTAGTATAATAACTGTGCTAATATGG
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TTCGTACCATAGTATACACATGCAGGGGCG
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	CATATAGATGTTTCCTTTCTACTCGTATAT
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	AAATATTATTCAATGCTGTAACTGTAAAAG
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TACTTTTATTGTCTGCTAAGAATACTACTA
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	ATTGTACAAATTCCAAGTAACTCATCATTA
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TTTTTCACGTTTGTACTGTCTCTCCTCGTA
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TACGATGTTAAGCGGTGGAGTAGATCAGTA
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TTGGGCAAAATGACCGTAATAAATCCATTC
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TTAGCACTTATATAGAAGCCCCGCCCCTAC
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	AGTGATGGGGAAGAGATTGAACTTATGTTT
GTTTTAGAGCTATATTATTCTGAATATCAACACACA

>NZ_APIH01000006|1|1|237389-238283|CRT
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	GCAATAGACCAGTTAGGTGTCACAGGTGCG
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	GATAGTAGTATAATAACTGTGCTAATATGG
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TTCGTACCATAGTATACACATGCAGGGGCG
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	CATATAGATGTTTCCTTTCTACTCGTATAT
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	AAATATTATTCAATGCTGTAACTGTAAAAG
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TACTTTTATTGTCTGCTAAGAATACTACTA
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	ATTGTACAAATTCCAAGTAACTCATCATTA
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TTTTTCACGTTTGTACTGTCTCTCCTCGTA
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TACGATGTTAAGCGGTGGAGTAGATCAGTA
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TTGGGCAAAATGACCGTAATAAATCCATTC
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TTAGCACTTATATAGAAGCCCCGCCCCTAC
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	AGTGATGGGGAAGAGATTGAACTTATGTTT
GTTTTAGAGCTATATTATTCTGAATATCAACACACA

>NZ_APIH01000006|1|1|237587-238018|PILER-CR
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	CATATAGATGTTTCCTTTCTACTCGTATAT
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	AAATATTATTCAATGCTGTAACTGTAAAAG
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TACTTTTATTGTCTGCTAAGAATACTACTA
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	ATTGTACAAATTCCAAGTAACTCATCATTA
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TTTTTCACGTTTGTACTGTCTCTCCTCGTA
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC	TACGATGTTAAGCGGTGGAGTAGATCAGTA
GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_APIH01000006.1\|WP_003730783.1\|228393_229140_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_APIH01000006.1\|WP_003730786.1\|235403_236270_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_APIH01000006.1\|WP_003730793.1\|240625_242152_-\|GW-domain-containing-glycosaminoglycan-binding-protein	unknown	unknown	gnl\|CDD\|224619
NZ_APIH01000006.1\|WP_003730785.1\|231398_235403_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_APIH01000006.1\|WP_003733614.1\|227590_228388_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_APIH01000006.1\|WP_003723648.1\|236266_236608_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_APIH01000006.1\|WP_003730787.1\|236597_237260_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_APIH01000006.1\|WP_003727703.1\|229334_229772_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_APIH01000006.1\|WP_003726075.1\|229793_230186_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_APIH01000006.1\|WP_003730784.1\|230409_230889_+\|hypothetical-protein	unknown	unknown	unknown
NZ_APIH01000006.1\|WP_003726061.1\|239292_239715_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NZ_APIH01000006.1\|WP_003728531.1\|226721_227588_+\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237454
NZ_APIH01000006.1\|WP_003730794.1\|242420_243449_+\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_APIH01000006.1\|WP_003730791.1\|238808_239171_+\|hypothetical-protein	unknown	unknown	unknown
NZ_APIH01000006.1\|WP_003730792.1\|239736_240588_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381359

Protein	Function_ID	Function_description	E-value
NZ_APIH01000006.1\|WP_003730792.1\|239736_240588_+\|aldo/keto-reductase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	7.09169e-171
NZ_APIH01000006.1\|WP_003730786.1\|235403_236270_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.30636e-135
NZ_APIH01000006.1\|WP_003730793.1\|240625_242152_-\|GW-domain-containing-glycosaminoglycan-binding-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	9.48061e-69
NZ_APIH01000006.1\|WP_003730785.1\|231398_235403_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_APIH01000006.1\|WP_003730783.1\|228393_229140_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	3.89524e-129
NZ_APIH01000006.1\|WP_003733614.1\|227590_228388_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	4.31169e-53
NZ_APIH01000006.1\|WP_003723648.1\|236266_236608_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.60762e-45
NZ_APIH01000006.1\|WP_003730787.1\|236597_237260_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	5.80993e-114
NZ_APIH01000006.1\|WP_003727703.1\|229334_229772_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.08607e-102
NZ_APIH01000006.1\|WP_003726075.1\|229793_230186_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	3.78102e-86
NZ_APIH01000006.1\|WP_003726061.1\|239292_239715_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.55324e-42
NZ_APIH01000006.1\|WP_003728531.1\|226721_227588_+\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237454	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
NZ_APIH01000006.1\|WP_003730794.1\|242420_243449_+\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	2.79554e-114

>NZ_APIH01000006.1|WP_003730787.1|236597_237260_+|type-II-A-CRISPR-associated-protein-Csn2
MNFNFKLLDDPIQIEDSTIFVIEDVRVFANVTKFFYQYEETEELTIFDAKHQPLKSSELMLITDVLGHDINSAATLKLIYADLEQQLNEKPEVKSMIDKLTATISELIGYELLEHELDLEEDEITVIELFKALGIKIETKSDTVFEKLIEIVQVYKYLSKKKLLVLINVCSYLTEEELLELRQYISLYQVKVLFIEPRKIKGSPQVTLDSDYFLHVENSV
>NZ_APIH01000006.1|WP_003723648.1|236266_236608_+|CRISPR-associated-endonuclease-Cas2
MSYRYMRMLLMFDMPTDTAKERKAYRQFRRFILSEGFIMHQYSVYSKILLNGTASKAMLARLKQQNPKKGLITLLTVTEKQFARMVYLSGEQNKSIGNSDARLVFLGDDADEF
>NZ_APIH01000006.1|WP_003730786.1|235403_236270_+|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVVVNSHSKLSYKNQHLVFKSTYQQEMIHLSEIDVLILETTDITLTTMLINCLVAENILILFCDDKRLPIGKVLPFYGRHDSSLQLTKQLEWDAELKAAVWTEIISQKILNQSTYLSMLNYDEKASSLINLHEALAVFDPTNREGHAARIYFNQLFGNDFTREQENDINSGLNYGYTLLLSIFARELVKSGCMTQFGLKHANQFNDFNLASDLMEPFRPLVDQIVYEKRNEDFQVIKRSLFELFTKQFDYNDQHMFLTNIASDYTKKIVKVLNEEREGVPEFRI
>NZ_APIH01000006.1|WP_003730785.1|231398_235403_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKNPYTIGLDIGTNSVGWAVLTDQYDLVKRKMKVAGNSDKKQIKKNFWGVRLFDDGQTAVDRRMNRTARRRIERRRNRISYLQEIFAVEMANIDANFFCRLNDSFYVDSEKRNSRHPFFATIEEEVAYHKNYRTIYHLREELVNSSEKADLRLVYLALAHIIKYRGNFLIEGALDTKNTSVDEVYKQFIQTYNQVFMSNIEEGALAKVEENTEVASILAGKFTRREKFERILRLYPGEKSTGMFAQFISLIVGNKGNFQKVFNLVEKTDIECAKDSYEEDLEALLAIIGDEYAELFVAAKNTYNAVVLSSIITVTATETNAKLSASMIERFDAHEKELGELKAFIKLHLPKQYQEIFNNAEIDGYAGYIDGKTKQVDFYKYLKTTLENVEGADYFITKIEEENFLRKQRTFDNGVIPHQLHLEELEAILHQQAKYYPFLREGYDKIKSLVTFRIPYFVGPLANGQSEFAWLTRKDDGEIRPWNIEEKVDFGKSAVDFIEKMTNKDTYLPKENVLPKHSLCYQKYMVYNELTKIRYIDDQGKTNYFSGREKQQIFNDLFKQKRKVKKKDLELFLRNINHIESPTIEGLEDSFNASYATYHDLLKVGLKQEILDNPLNTEILEDIVKILTVFEDKRMIKEQLEQFSDVLDGVVLKKLERRHYTGWGRLSAKLLVGIRDKQSHLTILDYLMNDDGLNRNLMQLINDSNLSFKSIIEKEQVSTTDKDLQSIVADLAGSPAIKKGILQSLKIVDELVSIMGYPPQTIVVEMARENQTTGKGKNNSKPRYKSLEKAIKDFGSQILKEHPTDNQELKNNRLYLYYLQNGKDIYTGQELDIHNLSNYDIDHIVPQSFITDNSIDNLVLTSSAGNREKGGDVPPLEIVRKRKVFWEKLYQGNLMSKRKFDYLTKAERGGLTEADKARFIHRQLVETRQITKNVANILHQRFNKETDNHGNTMEQVRIVTLKSALVSQFRKQFQLYKVREVNDYHHAHDAYLNGVVANTLLKVYPQLEPEFVYGEYHQFDWFKANKATAKKQFYTNIMLFFAQKERIIDENGEILWDKKYLETIKKVLDYRQINIVKKTEIQKGEFSKATIKPKGNSSKLIPRKENWDPVKYGGLDSPNMAYAVIIEHAKGKKKIVIEKKLIQINIMERKMFEKDEEAFLEEKGYHQPKVLTKLPKYTLYECEKGRRRMLSSANEAQKGNQLVLSNHLVSLLYHAKNCEASDGKSLKYIEAHRETFSELLAQVSEFATKYTLADANLSKINNLFEQNKEGDIKAIAQSFVDLMAFNAMGAPASFKFFEATIDRKRYTNLKELLSSTIIYQSITGLYESRKRLDD
>NZ_APIH01000006.1|WP_003730784.1|230409_230889_+|hypothetical-protein
MKGLIINKMHSGYFTNMSEVFNLLPEEELNCMWLVSSYECNIYPFEQIPFEKEYVWMKGTELKEILNQEEVMFIWGNFTSYPSNTKLKDILKYPIPFADGNSDLWKKDVHLSNPLSNTELISWDGSIFLTLSKNTTLIEGLKDDYPDSEDLSTYNSDID
>NZ_APIH01000006.1|WP_003726075.1|229793_230186_+|30S-ribosomal-protein-S9
MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDPRMKERKKYGLKGARRAPQFSKR
>NZ_APIH01000006.1|WP_003727703.1|229334_229772_+|50S-ribosomal-protein-L13
MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQQPEVYELRG
>NZ_APIH01000006.1|WP_003730783.1|228393_229140_+|tRNA-pseudouridine(38-40)-synthase-TruA
MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQAMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQGLYLWRVDYE
>NZ_APIH01000006.1|WP_003733614.1|227590_228388_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFAYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLTNGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLLRWRFADTLLLISLVVLSGLLFWLRS
>NZ_APIH01000006.1|WP_003728531.1|226721_227588_+|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MEIKLEQLGYCYQKNSPFEKRALLDVNVSFDSGSYSAIIGHTGSGKSTLLQHLNALLMPTEGKITVGDREIVAGVKQKKLRDLRKKVGIVFQFPEAQLFEETVEKDICFGPMNFGVSEEDAKLRAKKVIYEVGLTEEILSRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPHGREEIMEMFYNLHKEKGLTTVLVTHSMEDAARYAEKIVLMKAGTVLQIGTPREIFAKPDELVDLGLSVPDVVRFQGLFERKFDVKLTKTCLTIDELTTEMAPYLAKGGA
>NZ_APIH01000006.1|WP_003730791.1|238808_239171_+|hypothetical-protein
MKKTSIIFIFCALLLTACSTTTKEIPRQTTEATGTIEQVETESILIKNFKIKNDNNTPELSVRFHISEKYHDETGNKIKRTELNKNDNIKIILTKDFPIQETSPAQIDPKYIQKIILLNK
>NZ_APIH01000006.1|WP_003726061.1|239292_239715_+|MerR-family-transcriptional-regulator
MNIKQAADMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDLNWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKKVRELLVYKIDSYDSHIAQFKAGELNADNVEKLWKRDKF
>NZ_APIH01000006.1|WP_003730792.1|239736_240588_+|aldo/keto-reductase
MKTVKLNNGVEVPILGFGTYQITDAAEAEQAVKDAIKTGYRHIDTAQSYMNEEAVGRGIVASGVDRKELFITTKIWVENVSYKGVMSSFDRSLKRLGLDYIDLLLIHQPFNDVYGAWIAMEELQASGKIRAIGVSNFSPDRVIDLAAFNEVTPQVNQIEVNPFQQQAANLAVLRKEGVAIEAWAPFAEGKNDIFNNPVLTKIGAKYGKSAAQVILRWLVEQDIIVLAKSVKPERMAQNLAIFDFELTEADKGEIASLDQGESQFFSHADPEMVKWMASRKLNV
>NZ_APIH01000006.1|WP_003730793.1|240625_242152_-|GW-domain-containing-glycosaminoglycan-binding-protein
MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTGQVNLTTSQQAFIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSNNLFGIKGTYKGESVSMGTMEASGSTTANFRVYPSWKESIEDHTALITENARYQDAVGETNYRKALQAIKDGGYATDPDYVSKLVAIIERYNLDKYDVIYDKIESNQSLAAIGTVAENKEQEVIWSAPYNTENANKIGTLENYLGRNLEISWEAKTEKGLWYFIRENNKDIGWINSNALKISYHQKEDENVHLTKYVDDLSAHVYRLPSPEKQFDNGTIAKYDRKALEVDKKITRGGYAWFRISEGEKVIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATDNVWTAPFNTKNAEKLAPLADYDNEKLELVTRAKAGNTLWYQFKVDGKLVGWASEKDLNVFYTPAKEEPVKQVAYVKDPTAKLYNKPVESTSTNPKAVGFYYGKLLAVDKTATILGEDWLHLKDRQNSLGWIKAIDINS
>NZ_APIH01000006.1|WP_003730794.1|242420_243449_+|Mrp/NBP35-family-ATP-binding-protein
MLNEQQITRLLYRLQDPVLEASLEETEGVLEVQVLEETANIKIALADPAVETDHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSEASETKFLAIASGKGGVGKSTVSANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPRKENGQIIPVETHGIQMISMDFFVEQGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGTGDVALDIHTLIPKCNELIVTTPHYAAASVASRAGYMAAKNNHKIIGVIENMSYLTLADGQVLKVFGQGGGEKVAADLETQLLIQLPIEQPEPNGNGYVSAIFNSSSTSGKAYKTLAEKIIPYLS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_APIH01000006_1	1.2\|237491\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	237491-237520	30	MH299806	Listeria phage LP-KV022, complete genome	52817-52846	0	1.0
NZ_APIH01000006_1	1.2\|237491\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	237491-237520	30	MN114083	Listeria phage LP-013, complete genome	48513-48542	0	1.0
NZ_APIH01000006_1	1.2\|237491\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	237491-237520	30	NC_021785	Listeria phage LP-110, complete genome	10535-10564	0	1.0
NZ_APIH01000006_1	1.2\|237491\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	237491-237520	30	KJ094026	Listeria phage LP-032 contig 3, partial genome	10007-10036	0	1.0
NZ_APIH01000006_1	1.2\|237491\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	237491-237520	30	MN128593	Listeria phage LP-031, complete genome	47633-47662	0	1.0
NZ_APIH01000006_1	1.2\|237491\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	237491-237520	30	NC_021787	Listeria phage LP-037, complete genome	5014-5043	0	1.0
NZ_APIH01000006_1	1.2\|237491\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	237491-237520	30	JX442241	Listeria phage P70, complete genome	54951-54980	0	1.0
NZ_APIH01000006_1	1.2\|237491\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	237491-237520	30	KJ094020	Listeria phage LP-026, complete genome	31166-31195	0	1.0
NZ_APIH01000006_1	1.2\|237491\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	237491-237520	30	KJ094021	Listeria phage LP-114, complete genome	38339-38368	0	1.0
NZ_APIH01000006_1	1.2\|237491\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	237491-237520	30	MN114082	Listeria phage LP-010, complete genome	47798-47827	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	MT438761	Listeria virus P61, complete genome	7010-7039	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	131100-131129	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	KJ668718	Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds	1258-1287	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	MT178766	Listeria virus P100plus, complete genome	96120-96149	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	NC_047872	Listeria phage LMTA-94, complete genome	2498-2527	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	MT178767	Listeria virus P200, complete genome	96121-96150	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	KJ591605	Listeria phage LMTA-57, complete genome	12879-12908	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	MN128594	Listeria phage LP-066, complete genome	131590-131619	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	NC_042048	Listeria phage LMTA-34, complete genome	8562-8591	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	6613-6642	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	NC_041862	Listeria phage LP-064, complete genome	3914-3943	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	KJ094030	Listeria phage LP-083-2, complete genome	981-1010	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	JX126918	Listeria phage LP-125, complete genome	3914-3943	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	NC_024360	Listeria phage LMSP-25, complete genome	8562-8591	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	129717-129746	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	KJ094031	Listeria phage LP-124, complete genome	98866-98895	0	1.0
NZ_APIH01000006_1	1.7\|237821\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237821-237850	30	DQ003638	Listeria phage A511, complete genome	129539-129568	0	1.0
NZ_APIH01000006_1	1.11\|238086\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	238086-238115	30	KJ094023	Listeria phage LP-101, complete genome	13151-13180	0	1.0
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	MN172529	Listeria phage LP-039, complete genome	129892-129921	1	0.967
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	NC_025440	Listeria phage WIL-1, complete genome	38247-38276	1	0.967
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	DQ003638	Listeria phage A511, complete genome	129021-129050	1	0.967
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	KJ591604	Listeria phage LMTA-148, complete genome	6287-6316	1	0.967
NZ_APIH01000006_1	1.6\|237755\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237755-237784	30	KJ094033	Listeria phage LP-048, complete genome	132349-132378	1	0.967
NZ_APIH01000006_1	1.11\|238086\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	238086-238115	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	222678-222707	1	0.967
NZ_APIH01000006_1	1.2\|237491\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	237491-237520	30	MN904502	Listeria phage LP-018, complete genome	47792-47821	2	0.933
NZ_APIH01000006_1	1.7\|237821\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237821-237850	30	KJ668718	Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds	1776-1805	2	0.933
NZ_APIH01000006_1	1.7\|237821\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237821-237850	30	MT178766	Listeria virus P100plus, complete genome	96638-96667	2	0.933
NZ_APIH01000006_1	1.7\|237821\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237821-237850	30	NC_025440	Listeria phage WIL-1, complete genome	37729-37758	2	0.933
NZ_APIH01000006_1	1.7\|237821\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237821-237850	30	MT178767	Listeria virus P200, complete genome	96639-96668	2	0.933
NZ_APIH01000006_1	1.7\|237821\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237821-237850	30	KJ591605	Listeria phage LMTA-57, complete genome	12361-12390	2	0.933
NZ_APIH01000006_1	1.2\|237491\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	237491-237520	30	JB137888	Sequence 7 from Patent WO2012159774	340-369	3	0.9
NZ_APIH01000006_1	1.7\|237821\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237821-237850	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	6095-6124	3	0.9
NZ_APIH01000006_1	1.7\|237821\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237821-237850	30	NC_047872	Listeria phage LMTA-94, complete genome	1980-2009	3	0.9
NZ_APIH01000006_1	1.7\|237821\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237821-237850	30	NC_042048	Listeria phage LMTA-34, complete genome	9080-9109	3	0.9
NZ_APIH01000006_1	1.7\|237821\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237821-237850	30	NC_024360	Listeria phage LMSP-25, complete genome	9080-9109	3	0.9
NZ_APIH01000006_1	1.7\|237821\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237821-237850	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	131618-131647	4	0.867
NZ_APIH01000006_1	1.7\|237821\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237821-237850	30	MN128594	Listeria phage LP-066, complete genome	132108-132137	4	0.867
NZ_APIH01000006_1	1.7\|237821\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237821-237850	30	NC_041862	Listeria phage LP-064, complete genome	4432-4461	4	0.867
NZ_APIH01000006_1	1.7\|237821\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237821-237850	30	KJ094030	Listeria phage LP-083-2, complete genome	1499-1528	4	0.867
NZ_APIH01000006_1	1.7\|237821\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237821-237850	30	JX126918	Listeria phage LP-125, complete genome	4432-4461	4	0.867
NZ_APIH01000006_1	1.7\|237821\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237821-237850	30	KJ094031	Listeria phage LP-124, complete genome	99384-99413	4	0.867
NZ_APIH01000006_1	1.1\|237425\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	237425-237454	30	NZ_CP040765	Paracoccus sp. 2251 plasmid unnamed1, complete sequence	223230-223259	8	0.733
NZ_APIH01000006_1	1.5\|237689\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237689-237718	30	NC_012970	Methylovorus glucosetrophus SIP3-4 plasmid pMsip01, complete sequence	63330-63359	8	0.733
NZ_APIH01000006_1	1.5\|237689\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237689-237718	30	MN552143	Lactococcus phage P1046, complete genome	19997-20026	8	0.733
NZ_APIH01000006_1	1.5\|237689\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237689-237718	30	NC_010576	Lactococcus phage 1706, complete genome	21200-21229	8	0.733
NZ_APIH01000006_1	1.5\|237689\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237689-237718	30	MK779875	Lactococcus phage CHPC971, complete genome	20962-20991	8	0.733
NZ_APIH01000006_1	1.8\|237887\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT,PILER-CR	237887-237916	30	MN035989	Leviviridae sp. isolate H3_Bulk_41_scaffold_462 RNA-dependent RNA polymerase (H3Bulk41462_000001), hypothetical protein (H3Bulk41462_000002), hypothetical protein (H3Bulk41462_000003), and hypothetical protein (H3Bulk41462_000004) genes, complete cds	382-411	8	0.733
NZ_APIH01000006_1	1.13\|238218\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	238218-238247	30	MN855765	Myoviridae sp. isolate 14, complete genome	24949-24978	8	0.733
NZ_APIH01000006_1	1.11\|238086\|30\|NZ_APIH01000006\|CRISPRCasFinder,CRT	238086-238115	30	NZ_LR136959	Alteromonas sp. 76-1 plasmid pAlt76, complete sequence	31734-31763	9	0.7

1. spacer 1.2|237491|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 0, identity: 1.0

gatagtagtataataactgtgctaatatgg	CRISPR spacer
gatagtagtataataactgtgctaatatgg	Protospacer
******************************

2. spacer 1.2|237491|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 0, identity: 1.0

gatagtagtataataactgtgctaatatgg	CRISPR spacer
gatagtagtataataactgtgctaatatgg	Protospacer
******************************

3. spacer 1.2|237491|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 0, identity: 1.0

gatagtagtataataactgtgctaatatgg	CRISPR spacer
gatagtagtataataactgtgctaatatgg	Protospacer
******************************

4. spacer 1.2|237491|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to KJ094026 (Listeria phage LP-032 contig 3, partial genome) position: , mismatch: 0, identity: 1.0

gatagtagtataataactgtgctaatatgg	CRISPR spacer
gatagtagtataataactgtgctaatatgg	Protospacer
******************************

5. spacer 1.2|237491|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 0, identity: 1.0

gatagtagtataataactgtgctaatatgg	CRISPR spacer
gatagtagtataataactgtgctaatatgg	Protospacer
******************************

6. spacer 1.2|237491|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 0, identity: 1.0

gatagtagtataataactgtgctaatatgg	CRISPR spacer
gatagtagtataataactgtgctaatatgg	Protospacer
******************************

7. spacer 1.2|237491|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 0, identity: 1.0

gatagtagtataataactgtgctaatatgg	CRISPR spacer
gatagtagtataataactgtgctaatatgg	Protospacer
******************************

8. spacer 1.2|237491|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 0, identity: 1.0

gatagtagtataataactgtgctaatatgg	CRISPR spacer
gatagtagtataataactgtgctaatatgg	Protospacer
******************************

9. spacer 1.2|237491|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 0, identity: 1.0

gatagtagtataataactgtgctaatatgg	CRISPR spacer
gatagtagtataataactgtgctaatatgg	Protospacer
******************************

10. spacer 1.2|237491|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 0, identity: 1.0

gatagtagtataataactgtgctaatatgg	CRISPR spacer
gatagtagtataataactgtgctaatatgg	Protospacer
******************************

11. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 0, identity: 1.0

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttattgtctgctaagaatactacta	Protospacer
******************************

12. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 0, identity: 1.0

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttattgtctgctaagaatactacta	Protospacer
******************************

13. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to KJ668718 (Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds) position: , mismatch: 0, identity: 1.0

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttattgtctgctaagaatactacta	Protospacer
******************************

14. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 0, identity: 1.0

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttattgtctgctaagaatactacta	Protospacer
******************************

15. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 0, identity: 1.0

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttattgtctgctaagaatactacta	Protospacer
******************************

16. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 0, identity: 1.0

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttattgtctgctaagaatactacta	Protospacer
******************************

17. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 0, identity: 1.0

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttattgtctgctaagaatactacta	Protospacer
******************************

18. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 0, identity: 1.0

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttattgtctgctaagaatactacta	Protospacer
******************************

19. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 0, identity: 1.0

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttattgtctgctaagaatactacta	Protospacer
******************************

20. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 0, identity: 1.0

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttattgtctgctaagaatactacta	Protospacer
******************************

21. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 0, identity: 1.0

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttattgtctgctaagaatactacta	Protospacer
******************************

22. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 0, identity: 1.0

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttattgtctgctaagaatactacta	Protospacer
******************************

23. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 0, identity: 1.0

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttattgtctgctaagaatactacta	Protospacer
******************************

24. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 0, identity: 1.0

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttattgtctgctaagaatactacta	Protospacer
******************************

25. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 0, identity: 1.0

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttattgtctgctaagaatactacta	Protospacer
******************************

26. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 0, identity: 1.0

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttattgtctgctaagaatactacta	Protospacer
******************************

27. spacer 1.7|237821|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 0, identity: 1.0

attgtacaaattccaagtaactcatcatta	CRISPR spacer
attgtacaaattccaagtaactcatcatta	Protospacer
******************************

28. spacer 1.11|238086|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

ttgggcaaaatgaccgtaataaatccattc	CRISPR spacer
ttgggcaaaatgaccgtaataaatccattc	Protospacer
******************************

29. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 1, identity: 0.967

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttgttgtctgctaagaatactacta	Protospacer
*******.**********************

30. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 1, identity: 0.967

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttgttgtctgctaagaatactacta	Protospacer
*******.**********************

31. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 1, identity: 0.967

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttgttgtctgctaagaatactacta	Protospacer
*******.**********************

32. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 1, identity: 0.967

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttgttgtctgctaagaatactacta	Protospacer
*******.**********************

33. spacer 1.6|237755|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 1, identity: 0.967

tacttttattgtctgctaagaatactacta	CRISPR spacer
tacttttgttgtctgctaagaatactacta	Protospacer
*******.**********************

34. spacer 1.11|238086|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.967

ttgggcaaaatgaccgtaataaatccattc	CRISPR spacer
ttgagcaaaatgaccgtaataaatccattc	Protospacer
***.**************************

35. spacer 1.2|237491|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 2, identity: 0.933

gatagtagtataataactgtgctaatatgg	CRISPR spacer
gatagtagtataataactgtgctaaaatag	Protospacer
************************* **.*

36. spacer 1.7|237821|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to KJ668718 (Listeria phage LMTA-34 hypothetical proteins and DNA modification protein genes, complete cds) position: , mismatch: 2, identity: 0.933

attgtacaaattccaagtaactcatcatta	CRISPR spacer
attgtacaaattccaagtaactcatcctca	Protospacer
************************** *.*

37. spacer 1.7|237821|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 2, identity: 0.933

attgtacaaattccaagtaactcatcatta	CRISPR spacer
attgtacaaatcccaagtaactcatcatca	Protospacer
***********.****************.*

38. spacer 1.7|237821|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 2, identity: 0.933

attgtacaaattccaagtaactcatcatta	CRISPR spacer
attgtacaaatcccaagtaactcatcatca	Protospacer
***********.****************.*

39. spacer 1.7|237821|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 2, identity: 0.933

attgtacaaattccaagtaactcatcatta	CRISPR spacer
attgtacaaatcccaagtaactcatcatca	Protospacer
***********.****************.*

40. spacer 1.7|237821|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 2, identity: 0.933

attgtacaaattccaagtaactcatcatta	CRISPR spacer
attgtacaaatcccaagtaactcatcatca	Protospacer
***********.****************.*

41. spacer 1.2|237491|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 3, identity: 0.9

gatagtagtataataactgtgctaatatgg	CRISPR spacer
gatagtagtataataacagtactaatatag	Protospacer
***************** **.*******.*

42. spacer 1.7|237821|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 3, identity: 0.9

attgtacaaattccaagtaactcatcatta	CRISPR spacer
attgtacaaatcccaagtaactcatcacca	Protospacer
***********.***************..*

43. spacer 1.7|237821|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 3, identity: 0.9

attgtacaaattccaagtaactcatcatta	CRISPR spacer
attgtacaaatcccaagtaactcgtcatca	Protospacer
***********.***********.****.*

44. spacer 1.7|237821|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 3, identity: 0.9

attgtacaaattccaagtaactcatcatta	CRISPR spacer
attgtacaaatcccaagtaactcgtcatca	Protospacer
***********.***********.****.*

45. spacer 1.7|237821|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 3, identity: 0.9

attgtacaaattccaagtaactcatcatta	CRISPR spacer
attgtacaaatcccaagtaactcgtcatca	Protospacer
***********.***********.****.*

46. spacer 1.7|237821|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 4, identity: 0.867

attgtacaaattccaagtaactcatcatta	CRISPR spacer
attgtacaaatcccaagtaactcattgtca	Protospacer
***********.*************..*.*

47. spacer 1.7|237821|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 4, identity: 0.867

attgtacaaattccaagtaactcatcatta	CRISPR spacer
attgtacaaatcccaagtaactcattgtca	Protospacer
***********.*************..*.*

48. spacer 1.7|237821|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 4, identity: 0.867

attgtacaaattccaagtaactcatcatta	CRISPR spacer
attgtacaaatcccaagtaactcattgtca	Protospacer
***********.*************..*.*

49. spacer 1.7|237821|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 4, identity: 0.867

attgtacaaattccaagtaactcatcatta	CRISPR spacer
attgtacaaatcccaagtaactcattgtca	Protospacer
***********.*************..*.*

50. spacer 1.7|237821|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 4, identity: 0.867

attgtacaaattccaagtaactcatcatta	CRISPR spacer
attgtacaaatcccaagtaactcattgtca	Protospacer
***********.*************..*.*

51. spacer 1.7|237821|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 4, identity: 0.867

attgtacaaattccaagtaactcatcatta	CRISPR spacer
attgtacaaatcccaagtaactcattgtca	Protospacer
***********.*************..*.*

52. spacer 1.1|237425|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to NZ_CP040765 (Paracoccus sp. 2251 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gcaatagaccagttaggtgtcacaggtgcg	CRISPR spacer
gccatagaccagttcggtgtcactcagccc	Protospacer
** *********** ********  .  *

53. spacer 1.5|237689|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to NC_012970 (Methylovorus glucosetrophus SIP3-4 plasmid pMsip01, complete sequence) position: , mismatch: 8, identity: 0.733

aaatattattcaatgctgtaactgtaaaag	CRISPR spacer
taatatttttcaatgctgcaactgctgtcg	Protospacer
 ****** **********.*****. .  *

54. spacer 1.5|237689|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to MN552143 (Lactococcus phage P1046, complete genome) position: , mismatch: 8, identity: 0.733

aaatattattcaatgctgtaactgtaaaag	CRISPR spacer
ctaatctattcaatgcagtaactgtaactg	Protospacer
  *  .********** **********  *

55. spacer 1.5|237689|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to NC_010576 (Lactococcus phage 1706, complete genome) position: , mismatch: 8, identity: 0.733

aaatattattcaatgctgtaactgtaaaag	CRISPR spacer
ctaatctattcaatgcagtaactgtaactg	Protospacer
  *  .********** **********  *

56. spacer 1.5|237689|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to MK779875 (Lactococcus phage CHPC971, complete genome) position: , mismatch: 8, identity: 0.733

aaatattattcaatgctgtaactgtaaaag	CRISPR spacer
ctaatctattcaatgcagtaactgtaactg	Protospacer
  *  .********** **********  *

57. spacer 1.8|237887|30|NZ_APIH01000006|CRISPRCasFinder,CRT,PILER-CR matches to MN035989 (Leviviridae sp. isolate H3_Bulk_41_scaffold_462 RNA-dependent RNA polymerase (H3Bulk41462_000001), hypothetical protein (H3Bulk41462_000002), hypothetical protein (H3Bulk41462_000003), and hypothetical protein (H3Bulk41462_000004) genes, complete cds) position: , mismatch: 8, identity: 0.733

------tttttcacgtttgtactgtctctcctcgta	CRISPR spacer
gggaaat------cgtttctactgtctctcttcgta	Protospacer
      *      ***** ***********.*****

58. spacer 1.13|238218|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to MN855765 (Myoviridae sp. isolate 14, complete genome) position: , mismatch: 8, identity: 0.733

agtgatggggaagagattgaacttatgttt	CRISPR spacer
gctgatgggaaagaggttgaacttaaaggt	Protospacer
. *******.*****.********* .  *

59. spacer 1.11|238086|30|NZ_APIH01000006|CRISPRCasFinder,CRT matches to NZ_LR136959 (Alteromonas sp. 76-1 plasmid pAlt76, complete sequence) position: , mismatch: 9, identity: 0.7

ttgggcaaaatgaccgtaataaatccattc	CRISPR spacer
gctttcaaaatgatcgtaataaatcaatag	Protospacer
 .   ********.*********** **

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_APIH01000002

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

20747 : 77598

Bacillus_virus(15.0%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003727526.1\|20747_21887_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003723563.1\|21966_22362_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|22512_22728_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003727523.1\|22851_23385_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003731300.1\|23400_24066_+	hypothetical protein	NA	NA	NA	NA
WP_003727521.1\|24327_25266_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|25380_26664_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|26848_28108_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_003726393.1\|28226_28793_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_003731301.1\|28827_29397_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003727520.1\|29498_30041_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003726396.1\|30050_30914_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003727519.1\|30910_31696_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	6.7e-26	37.6
WP_003727518.1\|31829_32690_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	3.1e-40	47.2
WP_003727517.1\|32962_35041_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	5.4e-107	37.5
WP_003731302.1\|35103_36408_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_003731303.1\|36690_37593_+	tyrosine recombinase XerC	A0A1B1IQT7	uncultured_Mediterranean_phage	1.6e-23	28.0
WP_003724001.1\|37613_38153_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_003727514.1\|38166_39576_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IBU3	Erwinia_phage	4.0e-29	26.0
WP_003726695.1\|39596_40376_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_003727513.1\|40478_40898_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003724130.1\|40920_41232_+	hypothetical protein	NA	NA	NA	NA
WP_003726697.1\|41234_42107_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003726698.1\|42148_42745_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003731304.1\|42902_43310_+	CoA-binding protein	NA	NA	NA	NA
WP_003727510.1\|43490_45458_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	5.1e-123	42.5
WP_003727509.1\|45454_47914_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	1.1e-101	31.8
WP_003726814.1\|47996_48464_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_003731305.1\|49091_50912_+	class 1 internalin InlK	NA	NA	NA	NA
WP_003727507.1\|50944_52831_-	peptidoglycan O-acetyltransferase OatA	B5WZU0	Pseudomonas_phage	3.8e-43	32.2
WP_003726657.1\|53043_53742_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	6.4e-12	31.9
WP_039378162.1\|53974_55651_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_003726658.1\|55777_56695_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003719566.1\|56816_57050_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_012681271.1\|57160_58384_+	GTPase HflX	NA	NA	NA	NA
WP_003727505.1\|58376_59603_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_003719570.1\|59804_60173_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003723435.1\|60243_61578_+	type I glutamate--ammonia ligase	M1NM71	Moumouvirus	4.2e-12	23.8
WP_003731338.1\|61721_63017_+	arsenic transporter	A0A2H4PQU3	Staphylococcus_phage	1.3e-146	62.1
WP_003726565.1\|63050_63575_-	GNAT family N-acetyltransferase	G9BWD5	Planktothrix_phage	1.0e-06	31.1
WP_003723438.1\|63605_64220_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	9.3e-15	62.1
WP_003727502.1\|64375_64705_+	cell division suppressor protein YneA	NA	NA	NA	NA
WP_003727501.1\|64798_65026_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_003731337.1\|65172_67167_+	transketolase	NA	NA	NA	NA
WP_003726667.1\|67387_67627_+	YneF family protein	NA	NA	NA	NA
WP_003726668.1\|67675_68407_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	2.3e-81	58.0
WP_003726669.1\|68428_68935_-	ParB-like nuclease domain-containing protein	A0A220GKT8	Streptococcus_phage	1.4e-56	66.7
WP_003731336.1\|68944_70249_-	DUF3440 domain-containing protein	A0A220GKF8	Streptococcus_phage	1.2e-133	52.1
WP_012681273.1\|70238_71444_-	helicase SNF2	L0P6E9	Lactobacillus_phage	7.0e-91	46.6
WP_003727498.1\|71421_71796_-	hypothetical protein	NA	NA	NA	NA
WP_003723449.1\|72088_72817_+	UMP kinase	NA	NA	NA	NA
WP_003723450.1\|72816_73374_+	ribosome recycling factor	NA	NA	NA	NA
WP_003727497.1\|73604_74363_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	4.4e-22	42.1
WP_003727496.1\|74376_75165_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_003731335.1\|75179_76322_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_003726415.1\|76335_77598_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_APIH01000015

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_APIH01000015_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_APIH01000015_1

4471-5055

Orphan

Consensus_repeat	Method
GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	CRT

7 spacers

The CRISPR arrays of NZ_APIH01000015_1

>merge|NZ_APIH01000015|1|4471-5055|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATGTGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTGGATGTAAGTCATTTTGATACGAGTTCAGTAACTAATATGTCTTACATGTTTTATGATAATAGAAACCTTGAGGTGCTGGATGTAAGCAACCTTGATACCGGTTCAGTAACTAATATGTATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTGGATGTAAGTAATTTTGATACGAGTTCAGTAACTGATATGTATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTAGATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATGGTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTGGATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATGCGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTAGATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATGGCTGCCATGTTTTCTGATAATGAAAAACTGGAGAAGCTTGATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

>NZ_APIH01000015|1|1|4471-5055|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATG	TGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTG
GATGTAAGTCATTTTGATACGAGTTCAGTAACTAATATG	TCTTACATGTTTTATGATAATAGAAACCTTGAGGTGCTG
GATGTAAGCAACCTTGATACCGGTTCAGTAACTAATATG	TATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTG
GATGTAAGTAATTTTGATACGAGTTCAGTAACTGATATG	TATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTA
GATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATG	GTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTG
GATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATG	CGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGCGTTA
GATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATG	GCTGCCATGTTTTCTGATAATGAAAAACTGGAGAAGCTT
GATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

>NZ_APIH01000015.1|WP_014929914.1|1596_3678_+|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIALGNANVSIAQERDTTNKLPEEELGSLDTSNLIAEEVAQEKPAEVENLEEIPTTDELMQNPEVREQPVADSDDPDLTAVSSGDYWTIYYNSANDEYSLRMFGNVPSSKPSAWNSYLKYIKHIEIEEATLTGDFSSYFRSNVFTVLESVRIERSNLSGVTSFARAFEGDSESESPLEKVIIRDNYYPETPSLTNISRMFTLCRKLSELDVSGLNTSSVTKMDTIFSNANSLKELDVSHFDTSSVTDMSSMFAACNSLEELDVSNFDTSSVTNMKYMLSGLHLKKLDVSNFDTSSVTNMYGMFAYCYNLEELDVSNFDTSSVNNMLHMFYVCNNLEELDLSNFDTSSVTNMFAMFAYCTSLKEIDVSNFDTSSVTTMSAMFFECSSLEALDLSNFDTSSVTTMASMFENSTALKSLYLDNFTDAASMTDMFKGTTSLTYLFVSHNLSTFNRLENTSWYDEKNWVQFSNLSQLQTYHRKQSEPTGYRKGAFLSLTMDAMGGEFEDAEEQKVQNKVSGEYWEEIVPVKEDYYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVIIPASISLNEATELKVEGINRGSKALSVGLNRLATSVSESNELTLANTADTTVQCSAPLSWDGSENNPEKAILTLAPGSEITEGDAVMAIEAPENIQAGKYTGNLVFSINYE
>NZ_APIH01000015.1|WP_039381749.1|0_1333_+|helix-turn-helix-domain-containing-protein
NLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLSSFPNLQALAKKVHVSYSGIKKEIKELNEELRERNLYISTGNQVEITGDEFSLRIFYAFLFLVAYSGDRWPFSFVRYDEITDLLESCPKEIYRANSIDKAMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKKVAKQVPNRSYKEMTYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASEQVNDNLSIPFSEKEMELLRYSFASINYRYFLLDNLINKFNNIVPGYTDLDRNIRKIHKVNHLEPLISQLVNLKEMDPLKPFEERLTSDYLIILDKRIDFSIHTLPIKVTILSTISNETAVFDFMRYFSSYYNLEIINQVDPVVDLYISDFSVSPEVLTSLRINQPIIYVNTRWLESDYVKINDNLAKIARKKFIANKKN
>NZ_APIH01000015.1|WP_039379048.1|6017_7775_+|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIAFGSANVSIAQERDTTNKLPEEELGSLDTSNIIAEEVAQEKPAEVEQLEEIPITDELMQNPDVLEQPVADSDDTDLTVVSSGDFWTIYRNTVNNEYSLCMFGNVPSSRPTAWNSYLKSIKHIEIEEATLTGSFEAYFRGTVFTVLESVRIEQCNLSGVTSFDMAFYNSGIEKVIIRDNDYPTAPSLLATTYMFSLCRNLSELDLSGLDTSAVTNIYGMFQNCIRLEELDLSNFDTSSVTNMYSTFSGCRSLEKLDVSNFDTSSVTTMWAMFFECSSLEELDLSNFDTSSVTTMSYMFQLCPALKSLYLDNFTDAAIMTGMFGGTTSLTYLFVSHNLSTFNNLENTSWYDEKNWVQFSNLSQLQTYHRQQSEPTGYRKGAFLSLTMDAMGGQFEDAEEQKVQNKVSGEYWDEIVPVKEGHYFDGWYLNQDCTNKFDFSLPADASITIYAKWIENYTVIIPASISLNETSELKVEGINRGDKNLSVGLNRTAMSVSESNKLTLANTADTTVQCLAPLSWDGSETNPEKAILTLAPGSEITEGDAVMAIEAPENIQAGKYTGNLVFSIKYE
>NZ_APIH01000015.1|WP_039381752.1|7840_8160_+|hypothetical-protein
MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDHSAVDWNGKKQKDTSGEENTIAIPGFEKVTLYANETTQAVNFHNPEINDCYFKISLIHPDGSVLWISDL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_APIH01000011

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3398 : 71508

Listeria_phage(83.87%)

integrase,portal,protease,tRNA,plate,terminase,holin,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728400.1\|3398_5069_-\|tRNA	arginine--tRNA ligase	H2EDE2	Moumouvirus	1.3e-10	24.0
WP_003723610.1\|5065_5515_-	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_003726106.1\|5592_6246_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_071661788.1\|6280_6505_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_003731604.1\|6539_7862_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.9e-28	32.4
WP_003726109.1\|7876_8713_-	lipoyl-[GcvH]:protein N-lipoyltransferase	NA	NA	NA	NA
WP_003723615.1\|9030_9231_-	hypothetical protein	NA	NA	NA	NA
WP_003723616.1\|9253_9577_-	YxeA family protein	NA	NA	NA	NA
WP_014930032.1\|9730_11392_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003726112.1\|11526_12141_-	SdpI family protein	NA	NA	NA	NA
WP_003726113.1\|12164_12797_-	nicotinamidase	NA	NA	NA	NA
WP_039381646.1\|12797_13322_-	dihydrofolate reductase	NA	NA	NA	NA
WP_003731606.1\|13324_14323_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_003731607.1\|14419_14692_-	hypothetical protein	NA	NA	NA	NA
WP_003726117.1\|14740_15652_-	cation transporter	NA	NA	NA	NA
WP_003731608.1\|16029_16857_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_003731609.1\|16971_17847_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003728392.1\|17857_18151_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003733660.1\|18100_18307_-	hypothetical protein	NA	NA	NA	NA
WP_003728390.1\|18375_19044_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.5e-38	41.6
WP_003726476.1\|19043_20132_-	ABC transporter permease	NA	NA	NA	NA
WP_003731610.1\|20210_21590_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.5e-57	44.3
WP_003731611.1\|21586_22264_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.4e-58	48.6
WP_003726479.1\|22310_23096_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_003731613.1\|23157_23634_-	DUF1641 domain-containing protein	NA	NA	NA	NA
WP_003728388.1\|23633_26621_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_003728387.1\|27118_27961_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA
WP_003728386.1\|28010_29492_-	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_003728385.1\|29592_30480_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_014931683.1\|31049_31283_-	hypothetical protein	A0A059T6E1	Listeria_phage	5.2e-35	94.8
WP_003731277.1\|31584_31818_+	hypothetical protein	A8ATW9	Listeria_phage	4.3e-13	100.0
WP_003731276.1\|31849_32101_+	hypothetical protein	A8ATW8	Listeria_phage	2.0e-40	100.0
WP_003722518.1\|32101_32551_+	anti-CRISPR protein AcrIIA1	A8ATW7	Listeria_phage	2.4e-76	100.0
WP_039381651.1\|32575_33073_+	AP2 domain-containing protein	A8ATW6	Listeria_phage	1.9e-90	99.4
WP_031645777.1\|33165_33705_-	GNAT family N-acetyltransferase	A0A0B5CYP1	Listeria_phage	1.5e-77	79.2
WP_031645776.1\|33704_33884_-	hypothetical protein	A0A0B5CU31	Listeria_phage	3.5e-23	96.6
WP_039381656.1\|34122_34830_-	M15 family metallopeptidase	A8ATW4	Listeria_phage	6.1e-127	96.6
WP_003722522.1\|34829_35111_-\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
WP_014601069.1\|35123_35489_-	hypothetical protein	Q9T1A0	Listeria_phage	3.7e-11	97.9
WP_003722524.1\|35517_35676_-	hypothetical protein	Q9T1A1	Listeria_phage	6.0e-19	100.0
WP_003722525.1\|35680_35998_-	hypothetical protein	Q9T1A2	Listeria_phage	6.2e-55	100.0
WP_039381660.1\|36009_37083_-\|plate	BppU family phage baseplate upper protein	Q9T1A3	Listeria_phage	1.1e-175	88.0
WP_003722527.1\|37082_38111_-	hypothetical protein	Q9T1A4	Listeria_phage	4.6e-192	100.0
WP_003722528.1\|38111_39137_-\|tail	phage tail protein	Q9T1A5	Listeria_phage	4.3e-198	98.2
WP_031644600.1\|39145_39964_-\|tail	phage tail family protein	Q9T1A6	Listeria_phage	3.6e-147	92.3
WP_039381664.1\|39965_45329_-	tape measure protein	A0A059T7P2	Listeria_phage	0.0e+00	88.1
WP_031644596.1\|45344_45944_-	bacteriophage Gp15 family protein	A0A0B5CTW0	Listeria_phage	8.1e-72	68.0
WP_031644594.1\|45949_46372_-\|tail	phage tail assembly chaperone	Q9T1A9	Listeria_phage	2.0e-69	99.3
WP_031644591.1\|46426_46759_-	Ig-like domain-containing protein	Q9T1B0	Listeria_phage	4.1e-49	98.2
WP_031644589.1\|46688_47126_-	hypothetical protein	A0A0B5CYN3	Listeria_phage	1.2e-77	99.3
WP_010679811.1\|47128_47536_-	hypothetical protein	A0A0B5CU21	Listeria_phage	1.2e-66	98.5
WP_029508830.1\|47535_47874_-\|capsid	minor capsid protein	A0A0B5CTV8	Listeria_phage	5.4e-57	95.5
WP_039381670.1\|47873_48236_-	hypothetical protein	A0A059T658	Listeria_phage	3.3e-60	94.2
WP_009925044.1\|48235_48631_-	hypothetical protein	A0A059T5E3	Listeria_phage	2.2e-54	82.4
WP_009925045.1\|48632_48791_-	hypothetical protein	A8ASJ7	Listeria_phage	9.6e-17	92.3
WP_031645714.1\|48790_49690_-\|capsid	phage major capsid protein	Q9T1B7	Listeria_phage	1.0e-166	99.7
WP_009925047.1\|49713_50283_-	phage scaffolding protein	A0A0B5CTV7	Listeria_phage	1.2e-80	97.9
WP_039381673.1\|50361_51501_-\|capsid	phage minor capsid protein	A8ASJ4	Listeria_phage	1.3e-200	96.0
WP_009925050.1\|51501_53271_-\|portal	phage portal protein	A8ASJ3	Listeria_phage	5.0e-263	91.0
WP_010989956.1\|53283_54615_-\|terminase	PBSX family phage terminase large subunit	Q9T1C1	Listeria_phage	1.1e-259	98.0
WP_039381677.1\|54583_55126_-\|terminase	terminase small subunit	A8ASJ1	Listeria_phage	5.6e-88	96.7
WP_039177508.1\|55172_55355_-	hypothetical protein	NA	NA	NA	NA
WP_025370640.1\|55615_56050_-	hypothetical protein	A8ASQ1	Listeria_phage	3.1e-57	76.4
WP_003733720.1\|56114_56612_-	Holliday junction resolvase RecU	A0A1L2JY30	Aeribacillus_phage	1.8e-32	49.3
WP_003733721.1\|56601_56784_-	hypothetical protein	A8ASP6	Listeria_phage	1.1e-16	79.4
WP_014601507.1\|56802_57285_-	single-stranded DNA-binding protein	A0A059T5E0	Listeria_phage	1.1e-52	66.9
WP_014601508.1\|57353_57512_-	hypothetical protein	NA	NA	NA	NA
WP_014601509.1\|57512_57722_-	hypothetical protein	A8ATE0	Listeria_phage	1.7e-32	100.0
WP_014601510.1\|57718_58120_-	hypothetical protein	A8ATD9	Listeria_phage	2.6e-74	100.0
WP_014601511.1\|58178_58739_-	DUF1642 domain-containing protein	A8ATY9	Listeria_phage	9.4e-107	100.0
WP_014601512.1\|58735_59200_-	class I SAM-dependent methyltransferase	A0A059T693	Listeria_phage	6.9e-87	96.8
WP_003731837.1\|59264_59873_-	hypothetical protein	A8ATU1	Listeria_phage	1.4e-55	49.5
WP_039381680.1\|60000_60579_-	pentapeptide repeat-containing protein	A8ATE4	Listeria_phage	1.3e-42	90.4
WP_003731843.1\|60657_60873_-	hypothetical protein	NA	NA	NA	NA
WP_003731842.1\|60884_61052_-	hypothetical protein	A8ASN5	Listeria_phage	9.2e-18	80.0
WP_039381706.1\|61064_61595_-	hypothetical protein	A0A059T5F9	Listeria_phage	1.1e-91	90.3
WP_039379273.1\|61642_62554_-	DnaD domain-containing protein	A0A0B5D175	Listeria_phage	1.7e-134	88.2
WP_039379276.1\|62591_63503_-	recombinase RecT	A0A2H4JA23	uncultured_Caudovirales_phage	1.2e-37	40.5
WP_031670337.1\|63495_65007_-	ATPase	A0A2I7SC81	Paenibacillus_phage	7.5e-74	35.6
WP_031643418.1\|65238_65427_-	hypothetical protein	A0A059T7X9	Listeria_phage	3.8e-28	98.4
WP_020830690.1\|65529_65736_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039381685.1\|65725_66256_-	hypothetical protein	A8ATY1	Listeria_phage	1.4e-75	85.0
WP_003733633.1\|66378_67158_-	phage antirepressor Ant	A0A059T6E7	Listeria_phage	2.1e-141	98.1
WP_003725092.1\|67221_67425_+	KTSC domain-containing protein	A0A1S5S8T9	Streptococcus_phage	2.0e-14	56.7
WP_003725093.1\|67425_67593_-	hypothetical protein	NA	NA	NA	NA
WP_039381688.1\|67624_67906_-	hypothetical protein	Q9T180	Listeria_phage	2.2e-40	98.9
WP_039381690.1\|67902_68139_-	hypothetical protein	A0A059T5E9	Listeria_phage	2.8e-36	97.4
WP_026747215.1\|68159_68363_-	helix-turn-helix transcriptional regulator	A0A0B5D0D3	Listeria_phage	2.8e-08	50.0
WP_039381694.1\|68538_68844_+	helix-turn-helix transcriptional regulator	A0A059T669	Listeria_phage	4.0e-27	64.3
WP_031658243.1\|68875_69367_+	hypothetical protein	A8ATX4	Listeria_phage	1.8e-90	98.8
WP_039381698.1\|69393_70074_+	hypothetical protein	NA	NA	NA	NA
WP_039381701.1\|70138_70345_+	hypothetical protein	NA	NA	NA	NA
WP_039381704.1\|70344_71508_+\|integrase	site-specific integrase	S5MNZ2	Brevibacillus_phage	1.8e-51	31.7

Anti-CRISPR protein detection

Acr_ID: NZ_APIH01000011.1|WP_003731276.1|31849_32101_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_APIH01000011.1|WP_039381688.1|67624_67906_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_APIH01000011.1|WP_039381690.1|67902_68139_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_APIH01000011.1|WP_003731276.1|31849_32101_+|hypothetical-protein

31849_32101_+

83 aa aa

AcrIIA12

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3641\|WP_003731276.1\|AcrIIA12\|II-A\|Verified\|Listeria-monocytogenes	1.0	1	1.0

3398-71508

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_APIH01000001_1	Unclear	1.14\|51023\|36\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	51023-51058	36	36329-36294	1

1. spacer 1.14|51023|36|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_APIH01000011 position: 36329-36294, mismatch: 1

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggtgacagtaatacacctcaat	Protospacer
****************.*******************

NZ_APIH01000011.1|WP_039381688.1|67624_67906_-|hypothetical-protein

67624_67906_-

93 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.4827586206896552	1.0

3398-71508

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_APIH01000001_1	Unclear	1.14\|51023\|36\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	51023-51058	36	36329-36294	1

1. spacer 1.14|51023|36|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_APIH01000011 position: 36329-36294, mismatch: 1

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggtgacagtaatacacctcaat	Protospacer
****************.*******************

NZ_APIH01000011.1|WP_039381690.1|67902_68139_-|hypothetical-protein

67902_68139_-

78 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.4827586206896552	1.0

3398-71508

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_APIH01000001_1	Unclear	1.14\|51023\|36\|NZ_APIH01000001\|CRISPRCasFinder,CRT,PILER-CR	51023-51058	36	36329-36294	1

1. spacer 1.14|51023|36|NZ_APIH01000001|CRISPRCasFinder,CRT,PILER-CR matches to NZ_APIH01000011 position: 36329-36294, mismatch: 1

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggtgacagtaatacacctcaat	Protospacer
****************.*******************

7. NZ_APIH01000004

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_APIH01000004_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_APIH01000004_1

245463-245617

Unclear

Consensus_repeat	Method
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_APIH01000004_1

>merge|NZ_APIH01000004|1|245463-245617|CRISPRCasFinder
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGACACCGATGCTTCTTGGTTTTAATGCTCCTGCTACATCGGAACCGAGCTCATTCGAATTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC

>NZ_APIH01000004|1|1|245463-245617|CRISPRCasFinder
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	ACCGATGCTTCTTGGTTTTAATGCTCCTGCTACATCGGAACCGAGCTCATTCGAA
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_APIH01000004.1\|WP_003728173.1\|242938_244471_+\|zinc-metalloproteinase-Mpl	unknown	unknown	gnl\|CDD\|225768
NZ_APIH01000004.1\|WP_003722728.1\|237832_238789_+\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_APIH01000004.1\|WP_003728175.1\|236408_237782_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184643
NZ_APIH01000004.1\|WP_003722729.1\|238832_239546_-\|listeriolysin-O-transcriptional-regulator-PrfA	unknown	unknown	gnl\|CDD\|223736
NZ_APIH01000004.1\|WP_003725737.1\|251635_252220_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_APIH01000004.1\|WP_003726703.1\|239818_240772_-\|phosphatidylinositol-specific-phospholipase-C	unknown	unknown	gnl\|CDD\|176497
NZ_APIH01000004.1\|WP_003725734.1\|248022_248484_+\|YehR-family-lipoprotein	unknown	unknown	gnl\|CDD\|227145
NZ_APIH01000004.1\|WP_003725507.1\|233394_234603_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528
NZ_APIH01000004.1\|WP_003731748.1\|246625_247495_+\|phosphatidylcholine-phospholipase-C	unknown	unknown	gnl\|CDD\|214813
NZ_APIH01000004.1\|WP_003722726.1\|235713_236022_+\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NZ_APIH01000004.1\|WP_003725738.1\|252326_252887_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_APIH01000004.1\|WP_172381192.1\|248935_249655_-\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|378033
NZ_APIH01000004.1\|WP_003725735.1\|248536_248869_-\|putative-heavy-metal-binding-protein	unknown	unknown	gnl\|CDD\|179228
NZ_APIH01000004.1\|WP_003728167.1\|253000_256540_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NZ_APIH01000004.1\|WP_003728174.1\|241014_242604_+\|cholesterol-dependent-cytolysin-listeriolysin-O	unknown	unknown	gnl\|CDD\|366559
NZ_APIH01000004.1\|WP_003722725.1\|235286_235595_+\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NZ_APIH01000004.1\|WP_003731749.1\|247566_247890_+\|DUF5502-family-protein	unknown	unknown	gnl\|CDD\|340321
NZ_APIH01000004.1\|WP_003722739.1\|249687_250629_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
NZ_APIH01000004.1\|WP_003722740.1\|250922_251546_+\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	unknown	unknown	gnl\|CDD\|235534
NZ_APIH01000004.1\|WP_003722723.1\|232705_233398_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222

Protein	Function_ID	Function_description	E-value
NZ_APIH01000004.1\|WP_003728173.1\|242938_244471_+\|zinc-metalloproteinase-Mpl	gnl\|CDD\|225768	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism].	8.72102e-140
NZ_APIH01000004.1\|WP_003722728.1\|237832_238789_+\|ribose-phosphate-diphosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_APIH01000004.1\|WP_003728175.1\|236408_237782_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184643	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NZ_APIH01000004.1\|WP_003722729.1\|238832_239546_-\|listeriolysin-O-transcriptional-regulator-PrfA	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	9.59942e-12
NZ_APIH01000004.1\|WP_003725737.1\|251635_252220_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.9401e-09
NZ_APIH01000004.1\|WP_003726703.1\|239818_240772_-\|phosphatidylinositol-specific-phospholipase-C	gnl\|CDD\|176497	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated PI-analogues, PIP2 and PIP, to generate two important second messengers, InsP3 and DAG. InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. In contrast, bacterial PI-PLCs contain a single catalytic domain. Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. They participate in Ca2+-independent PI metabolism. They are characterized as phosphatidylinositol-specific phospholipase C (EC 4.6.1.13) that selectively hydrolyze PI, not PIP or PIP2. The TIM-barrel type catalytic domain in bacterial PI-PLCs is very similar to the one in eukaryotic PI-PLCs, in which the catalytic domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. The catalytic mechanism of both prokaryotic and eukaryotic PI-PLCs is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This superfamily also includes a distinctly different type of eukaryotic PLC, glycosylphosphatidylinositol-specific phospholipase C (GPI-PLC), an integral membrane protein characterized in the protozoan parasite Trypanosoma brucei. T. brucei GPI-PLC hydrolyzes the GPI-anchor on the variant specific glycoprotein (VSG), releasing dimyristyl glycerol (DMG), which may facilitate the evasion of the protozoan to the host#s immune system. It does not require Ca2+ for its activity and is more closely related to bacterial PI-PLCs, but not mammalian PI-PLCs.	1.53279e-112
NZ_APIH01000004.1\|WP_003725734.1\|248022_248484_+\|YehR-family-lipoprotein	gnl\|CDD\|227145	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown].	1.52192e-59
NZ_APIH01000004.1\|WP_003725507.1\|233394_234603_+\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	5.06393e-62
NZ_APIH01000004.1\|WP_003731748.1\|246625_247495_+\|phosphatidylcholine-phospholipase-C	gnl\|CDD\|214813	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.	4.429e-86
NZ_APIH01000004.1\|WP_003722726.1\|235713_236022_+\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	5.03804e-54
NZ_APIH01000004.1\|WP_003725738.1\|252326_252887_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	1.72721e-108
NZ_APIH01000004.1\|WP_172381192.1\|248935_249655_-\|DNA-alkylation-repair-protein	gnl\|CDD\|378033	pfam08713, DNA_alkylation, DNA alkylation repair enzyme. Proteins in this family are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein in this family shows it to adopt a supercoiled alpha helical structure.	3.05419e-22
NZ_APIH01000004.1\|WP_003725735.1\|248536_248869_-\|putative-heavy-metal-binding-protein	gnl\|CDD\|179228	PRK01119, PRK01119, putative heavy metal-binding protein.	8.98192e-61
NZ_APIH01000004.1\|WP_003728167.1\|253000_256540_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_APIH01000004.1\|WP_003728174.1\|241014_242604_+\|cholesterol-dependent-cytolysin-listeriolysin-O	gnl\|CDD\|366559	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin.	7.22171e-179
NZ_APIH01000004.1\|WP_003722725.1\|235286_235595_+\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	2.92652e-53
NZ_APIH01000004.1\|WP_003731749.1\|247566_247890_+\|DUF5502-family-protein	gnl\|CDD\|340321	pfam17606, DUF5502, Family of unknown function (DUF5502). This is a family of unknown function found in Listeria.	1.35733e-43
NZ_APIH01000004.1\|WP_003722739.1\|249687_250629_-\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	0
NZ_APIH01000004.1\|WP_003722740.1\|250922_251546_+\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	2.38585e-63
NZ_APIH01000004.1\|WP_003722723.1\|232705_233398_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	7.27113e-121

>NZ_APIH01000004.1|WP_003728173.1|242938_244471_+|zinc-metalloproteinase-Mpl
MKSKLICIIMVIAFQAHFNMAVKADSVGEERLRNNIQAKRNPADLKALPDSCEAKDFYKNFKILDMTKDKLGVTHYTLALSSDGYLTDNDEIKVHVTPDNKITFINGDLQQGQLRITNQIKITEKNAIEKAFEAIGQSEAHVKSYIGNPVKEKEIIINSRTKRLVYNIKLIFAEPEVASWIIQVDAETGAILKKQNMLSEVERADTHKDFQALGKGANRLLQRPLHVMKINDLFYLVDRTHKGLIRTFDLNHKTDASFGKVVSNKTNMFTDPEFSSAVDAHFYASEVYDYYKNVHQLESLDGKGGEIDSFVHYGLNCNNAFWDGREILYGDGDKKNFKPFSCAKTIVGHELTHAVIQYSAGLEYEGQSGALNESFADVFGYFIAPNHWLIGEDVCVRGLRDGRIRSIKDPDKYNQAAHMKDYESLPITEEGDWGGVHFNSGIPNKAAYNTITKLGKEKTEQLYFRALKYYLTKKAQFTDAKKALQQAAKDLYGEDASKKVAEAWEAVGVN
>NZ_APIH01000004.1|WP_003728174.1|241014_242604_+|cholesterol-dependent-cytolysin-listeriolysin-O
MKKIMLVFITLILVSLPIAQQTEAKDASAFNKENLISSMAPPASPPASPKTPIEKKHADEIDKYIQGLDYNKNNVLVYHGDAVTNVPPRKGYKDGNEYIVVEKKKKSINQNNADIQVVNAISSLTYPGALVKANSELVENQPDVLPVKRDSLTLSIDLPGMTNQDNKIVVKNATKSNVNNAVNTLVERWNEKYAQAYPNVSAKIDYDDEMAYSESQLIAKFGTAFKAVNNSLNVNFGAISEGKMQEEVISFKQIYYNVNVNEPTRPSRFFGKAVTKEQLQALGVNAENPPAYISSVAYGRQVYLKLSTNSHSTKVKAAFDAAVSGKSVSGDVELTNIIKNSSFKAVIYGGSAKDEVQIIDGNLGDLRDILKKGATFNRETPGVPIAYTTNFLKDNELAVIKNNSEYIETTSKAYTDGKINIDHSGGYVAQFNISWDEINYDPEGNEIVQHKNWSENNKSKLAHFTSSIYLPGNARNINVYAKECTGLAWEWWRTVIDDRNLPLVKNRNISIWGTTLYPKYSNSVDNPIE
>NZ_APIH01000004.1|WP_003726703.1|239818_240772_-|phosphatidylinositol-specific-phospholipase-C
MYKNYLQRTLVLVLCFILCFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTSLAALSIPGTHDTMSYNGDMTWTLTKPLAQTQTMSLYQQLEAGIRYIDIRAKDNLKIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSHKFGMQFGASNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN
>NZ_APIH01000004.1|WP_003722729.1|238832_239546_-|listeriolysin-O-transcriptional-regulator-PrfA
MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
>NZ_APIH01000004.1|WP_003722728.1|237832_238789_+|ribose-phosphate-diphosphokinase
MSNEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNPVNQNLMELLIMIDALKRASAATINIVMPYYGYARQDRKARSREPITAKLVANLIETAGATRMITLDMHAPQIQGFFDIPIDHLNAVRLLSDYFSERHLGDDLVVVSPDHGGVTRARKMADRLKAPIAIIDKRRPRPNVAEVMNIVGNVEGKVCIIIDDIIDTAGTITLAAKALREAGATKVYACCSHPVLSGPAMKRIEESPIEKLVVTNSIALPEEKWIDKMEQLSVAALLGEAIVRVHENASVSSLFE
>NZ_APIH01000004.1|WP_003728175.1|236408_237782_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MSKRYAVVLAAGQGTRMKSKLYKVLHPVCGKPMVEHVVDQISTLNVDKVVTIVGHGAEKVQEHLAGKSEFVKQEEQLGTAHAVLQAKAELAGKDGVTLVVCGDTPLIEASTMEALLKYHHEKRAKATILTTVIEDPTGYGRIIRDDLGIVEKIVEHKDATEKEQRISEINTGTYCFDNKALFEALENVSNDNVQGEYYLPDVIKILKDSDEVVAAYRMESFEESLGVNDRIALAEASRLMQRRINENHMRNGVTLVNPENTYIDIDVKIGQDTVIEPGVMLRGETVIGDDCVVTSGSEIVNSVIGERVHVRTSSIFESKVGDDVQIGPYAHLRPESDIHDHVKIGNYVETKKAVVGEGTKLPHFIYMGDAEIGKNVNVGCGSIAVNYDGKNKAKTIIGDNVFVGCNSNLIAPVKVGDRAFIAAGSTITKDVPDDALGIARAKQDNKLGYAKHLNHGK
>NZ_APIH01000004.1|WP_003722726.1|235713_236022_+|septation-regulator-SpoVG
MQVTDVRLRRVETDGRMRAIASITLDEEFVVHDIRVIDGNNGLFVAMPSKRGVDGEFRDIAHPINSDTRAKIQEVVLAEYERVGEEEATAVTEEESESVSAE
>NZ_APIH01000004.1|WP_003722725.1|235286_235595_+|septation-regulator-SpoVG
MEITDVRLRRVETDGRMKAISSITIDGEFVIHDIRVIDGNEGLFVAMPSKRTPDGEFRDIAHPINSGTRAKIQEAVLAAYEVADEPAVNEESSADESIVEEN
>NZ_APIH01000004.1|WP_003725507.1|233394_234603_+|ABC-transporter-permease
MNVLQSMKMAWKQLKASKLRSFLTMLGIIIGVASVILLVSLGNGVTQEVDDQMGDLGSNLITVVNSSVNPNDKYTYDEVMKYQNIDGVKSVSPELSGQVNATFDYKNSSNKVIGTNDQYKAARSLEMKEGRFLLPIDTEYGQKVAVIGSTVASDLFGFGDPIGETIRLNGMPYKVVGVLKEKGASMMGSSDDQIFIPISSAQRLLKDTNVRTIYVETKSAEDVDFVVNTLESRLAIKFGDEKEQEKNASSAQMGPSYQVINQQEILNAFNTISTTLTTALGAIAAISLVVGGIGIMNIMLVSVSERTREIGIRKALGAKKRAILLQFLIESIVISVCGGIIGIIIGVSGALIFGSVAGISSGITAGTIIFSFVFSLCIGVIFGIAPANKASKLRPIDALRSE
>NZ_APIH01000004.1|WP_003722723.1|232705_233398_+|ABC-transporter-ATP-binding-protein
MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPSGSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNKLSEIRNKKIGFIFQQFNLLPKLSAFENVELPLIYAGLSVSAREKAAIECLEKVGLLEKRRNLPTQLSGGQQQRVAIARALAGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQDGKLFHEEATQA
>NZ_APIH01000004.1|WP_003731748.1|246625_247495_+|phosphatidylcholine-phospholipase-C
MKFKKVVLGMCLTASVLVFPVTIKASACCDEYLKPPAAPHDIDSKLPHKLSWSADNPTNTDVNTHYWLFKQAEKILAKDVDHMRANLMNELKNFDKQIAQGIYDADHKNPYYDTSTFLSHFYNPDKDNTYLPGFANAKITGAKYFNQSVADYREGKFDTAFYKLGLAIHYYTDISQPMHANNFTAISYPPGYHCAYENYVDTIKHNYQATEDMVVKRFCSDDVKEWLYENAKRAKADYPKIVNAKTKKSYLVGNSEWKKDTVEPTGARLRDSQQTLAGFLEFWSKKTNE
>NZ_APIH01000004.1|WP_003731749.1|247566_247890_+|DUF5502-family-protein
MYIKGRLIFFFVMFVIALCSVLILLIIKMSVWKEEPFNLSDAKEIECLGSCKIKNTNQKIHFFSIKKNLFEEEGNMAGILNEHERKGADKSIFIVILDDEKGIANEE
>NZ_APIH01000004.1|WP_003725734.1|248022_248484_+|YehR-family-lipoprotein
MKMLKKGTTVLFVMIMAVMLVACGDKEETKTYSLSQNGVDSKLTYTYKGDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKAIETLEVDYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQGYKEVSK
>NZ_APIH01000004.1|WP_003725735.1|248536_248869_-|putative-heavy-metal-binding-protein
MIVTTSPNIEGKQIIEYKKIVFGEVITGVNFMKDIGAGLRNFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDYEVLGADNGMLMVTASGTAVVIEAQDY
>NZ_APIH01000004.1|WP_172381192.1|248935_249655_-|DNA-alkylation-repair-protein
MLFLLYLIYSRGVTRTITFDQLNTELQALENPNTIKIFRNHGCPDSLDLYGLKIGDLKKIIRREKLTKNHELAVELIESNNSDLIYLGLLAINPDKITTEQIEKWNIIFHETWSQLTFGLASIVSKRDDALLFAKTWIESDYDLTKSMGWQIYSEHINNLPEAEALLQRAKETLQTETNRTRYSMNGFIITCGIYKDDLHEKAMEAAKSVGKVHVNLGNTACKVPDAISYIEKARNRTK
>NZ_APIH01000004.1|WP_003722739.1|249687_250629_-|L-lactate-dehydrogenase
MKDHQKIILVGDGAVGSSYAFACVNLSIGQEFGIIDIDKDRTIGDAMDLSHAVPFSTPKKIYSANYSDCHDADLVVVTAGTAQKPGETRLDLVNRNIKIMKGIVDEVMASGFDGIFLIASNPVDILTYATWKFSGLPKERVIGSGTSLDTARFRMSIADYLKVDARNVHGYILGEHGDTEFPAWSHTTVGGLPITEWISEDEQGAMDTIFVSVRDAAYEIINKKGATFYGVAAALARITKAILNNENAILPLSVYLDGHYGMNDIYIGAPAVVNRQGVRHIVEMNLNDKEKEQMKNSADTLKKVLDDAMKQID
>NZ_APIH01000004.1|WP_003722740.1|250922_251546_+|50S-ribosomal-protein-L25/general-stress-protein-Ctc
MATTLEVQKRETTQHSEVTRLRSEGKVPGIIYGYKSENVPVSVDSLELIKAVRDNGRNAVFSVTVDGKKLNVLLHEYQVDPLKDVLVHVDLLAVDMNEEVETDVRVVLVGDAPGVKAGGVLQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLPENKDYVVQAEEEETVVTVSAPRAEEEPTTTEAPEPEAVHGKDEEPVE
>NZ_APIH01000004.1|WP_003725737.1|251635_252220_+|GNAT-family-N-acetyltransferase
MLDKSVPHISAIMVNHDATNYPEFHLPEGYSFCFYKDGLEEDWCRLQLETGQVLSMDSIRARFETEFGNEKEKLAKRCVFVEAPNGEIIGTAMLWDGNTFGEMASRIHWVAVLDSHGGKGIAKALLSKILGLNKSSFVYLTTQTGSYQAIYLYQKFGFEKYVGKTPENWKTVNFQEEKEAAWQIIENKIAEHQA
>NZ_APIH01000004.1|WP_003725738.1|252326_252887_+|aminoacyl-tRNA-hydrolase
MKLIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKSKFNGMTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRLRQKGSAGGHNGMKSIIQHVKTQEFNRIRVGVSRPLKGEVIHYVLGDFPKAEQPDIIAAIQKSADAIEDFAQTPFIEVMNKYNQK
>NZ_APIH01000004.1|WP_003728167.1|253000_256540_+|transcription-repair-coupling-factor
MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGIIDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIVKRLEKKMTHTLNELKENEDKQALVENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDYFPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLEANHSPKIYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKIKKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGEDKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREFEEAFPYQETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVPVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGTQLKITINVQNKPLKEWLYQVKSLAEKLRGAMKERASAEN

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

164615 : 175344

Listeria_phage(40.0%)

holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728215.1\|164615_165068_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|165073_165409_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003724946.1\|165625_166054_+	hypothetical protein	A8ATZ8	Listeria_phage	3.9e-12	45.7
WP_003731177.1\|166065_166482_+	hypothetical protein	NA	NA	NA	NA
WP_003728212.1\|166761_167151_+	DUF5072 family protein	NA	NA	NA	NA
WP_003721744.1\|167163_167676_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003721745.1\|167723_168026_+	hypothetical protein	NA	NA	NA	NA
WP_003740367.1\|168067_168472_+	hypothetical protein	A0A097PAX1	Streptococcus_pyogenes_phage	8.2e-20	43.7
WP_003731178.1\|168458_170327_+	membrane protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_003731179.1\|170323_171142_+\|tail	phage tail family protein	Q9T1A6	Listeria_phage	2.2e-43	35.5
WP_003728209.1\|171151_172288_+\|tail	phage tail protein	A0A0B5D0G3	Listeria_phage	2.2e-46	33.8
WP_003721751.1\|172277_172577_+	hypothetical protein	NA	NA	NA	NA
WP_003731180.1\|172591_173167_+	hypothetical protein	NA	NA	NA	NA
WP_003728207.1\|173181_173661_+	hypothetical protein	NA	NA	NA	NA
WP_003728206.1\|173657_174194_+	hypothetical protein	NA	NA	NA	NA
WP_003728205.1\|174212_174635_+\|holin	holin family protein	Q2I8E7	Bacillus_phage	8.6e-28	46.3
WP_003724957.1\|174615_175344_+	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGH1	Paenibacillus_phage	1.3e-34	42.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

8. NZ_APIH01000007

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

74888 : 82730

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003725407.1\|74888_75860_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003731212.1\|75867_76836_-	YvcK family protein	A1IMD5	Streptococcus_phage	1.8e-68	43.6
WP_003722606.1\|76837_77713_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_003731211.1\|77820_79551_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	2.8e-173	53.0
WP_003741152.1\|79592_80654_-	galactose mutarotase	NA	NA	NA	NA
WP_003731209.1\|80670_81654_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.5e-51	38.1
WP_003722610.1\|81770_82730_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage