CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_APIG01000012	Listeria monocytogenes SHL007 contig12, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000026	Listeria monocytogenes SHL007 contig27, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000027	Listeria monocytogenes SHL007 contig28, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000041	Listeria monocytogenes SHL007 contig43, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000022	Listeria monocytogenes SHL007 contig23, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000031	Listeria monocytogenes SHL007 contig33, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000001	Listeria monocytogenes SHL007 contig1, whole genome shotgun sequence	0 crisprs	NA	0	0	2	0
NZ_APIG01000039	Listeria monocytogenes SHL007 contig41, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000033	Listeria monocytogenes SHL007 contig35, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000017	Listeria monocytogenes SHL007 contig17, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000040	Listeria monocytogenes SHL007 contig42, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000038	Listeria monocytogenes SHL007 contig40, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000036	Listeria monocytogenes SHL007 contig38, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000008	Listeria monocytogenes SHL007 contig8, whole genome shotgun sequence	0 crisprs	csa3	0	0	1	0
NZ_APIG01000023	Listeria monocytogenes SHL007 contig24, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000003	Listeria monocytogenes SHL007 contig3, whole genome shotgun sequence	1 crisprs	csn2,cas2,cas1,cas9	2	29	0	0
NZ_APIG01000030	Listeria monocytogenes SHL007 contig32, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000028	Listeria monocytogenes SHL007 contig29, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000011	Listeria monocytogenes SHL007 contig11, whole genome shotgun sequence	0 crisprs	NA	0	0	1	2
NZ_APIG01000014	Listeria monocytogenes SHL007 contig14, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000035	Listeria monocytogenes SHL007 contig37, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000020	Listeria monocytogenes SHL007 contig20, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000025	Listeria monocytogenes SHL007 contig26, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000024	Listeria monocytogenes SHL007 contig25, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000016	Listeria monocytogenes SHL007 contig16, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000021	Listeria monocytogenes SHL007 contig21, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000032	Listeria monocytogenes SHL007 contig34, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000013	Listeria monocytogenes SHL007 contig13, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000037	Listeria monocytogenes SHL007 contig39, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000034	Listeria monocytogenes SHL007 contig36, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000010	Listeria monocytogenes SHL007 contig10, whole genome shotgun sequence	0 crisprs	NA	0	0	1	0
NZ_APIG01000006	Listeria monocytogenes SHL007 contig6, whole genome shotgun sequence	1 crisprs	csa3,DinG,cas3	0	0	1	0
NZ_APIG01000007	Listeria monocytogenes SHL007 contig7, whole genome shotgun sequence	0 crisprs	casR,WYL	0	0	0	0
NZ_APIG01000009	Listeria monocytogenes SHL007 contig9, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000004	Listeria monocytogenes SHL007 contig4, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000015	Listeria monocytogenes SHL007 contig15, whole genome shotgun sequence	1 crisprs	NA	0	0	0	0
NZ_APIG01000005	Listeria monocytogenes SHL007 contig5, whole genome shotgun sequence	0 crisprs	DinG	0	0	0	0
NZ_APIG01000019	Listeria monocytogenes SHL007 contig19, whole genome shotgun sequence	0 crisprs	NA	0	0	0	1
NZ_APIG01000018	Listeria monocytogenes SHL007 contig18, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0
NZ_APIG01000002	Listeria monocytogenes SHL007 contig2, whole genome shotgun sequence	0 crisprs	cas3,DEDDh	0	0	1	0
NZ_APIG01000029	Listeria monocytogenes SHL007 contig31, whole genome shotgun sequence	0 crisprs	NA	0	0	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2443 : 10729

Prochlorococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003726215.1\|2443_3736_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0
WP_003734637.1\|3816_4530_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	6.7e-41	38.3
WP_003722248.1\|4541_4787_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003726212.1\|4790_5474_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_009918191.1\|5466_7686_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.5e-159	40.8
WP_003722245.1\|7670_9098_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_003726210.1\|9116_10166_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.2e-63	44.4
WP_003731569.1\|10162_10729_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	2.8e-26	38.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_APIG01000006

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_APIG01000006_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_APIG01000006_1

130245-130399

Unclear

Consensus_repeat	Method
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_APIG01000006_1

>merge|NZ_APIG01000006|1|130245-130399|CRISPRCasFinder
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGACACCGATGCTTCTTGGTTTTAATGCTCCTGCTACATCGGAACCGAGCTCATTCGAATTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC

>NZ_APIG01000006|1|1|130245-130399|CRISPRCasFinder
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	ACCGATGCTTCTTGGTTTTAATGCTCCTGCTACATCGGAACCGAGCTCATTCGAA
TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_APIG01000006.1\|WP_003722739.1\|134469_135411_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
NZ_APIG01000006.1\|WP_003722726.1\|120495_120804_+\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NZ_APIG01000006.1\|WP_003722729.1\|123614_124328_-\|listeriolysin-O-transcriptional-regulator-PrfA	unknown	unknown	gnl\|CDD\|223736
NZ_APIG01000006.1\|WP_003725733.1\|132348_132672_+\|DUF5502-family-protein	unknown	unknown	gnl\|CDD\|340321
NZ_APIG01000006.1\|WP_003722728.1\|122614_123571_+\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_APIG01000006.1\|WP_003725737.1\|136427_137012_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_APIG01000006.1\|WP_003722725.1\|120068_120377_+\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NZ_APIG01000006.1\|WP_003740377.1\|133717_134437_-\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|378033
NZ_APIG01000006.1\|WP_003722723.1\|117486_118179_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_APIG01000006.1\|WP_003728174.1\|125796_127386_+\|cholesterol-dependent-cytolysin-listeriolysin-O	unknown	unknown	gnl\|CDD\|366559
NZ_APIG01000006.1\|WP_003740379.1\|141362_142952_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_APIG01000006.1\|WP_003725734.1\|132804_133266_+\|YehR-family-lipoprotein	unknown	unknown	gnl\|CDD\|227145
NZ_APIG01000006.1\|WP_009917654.1\|127720_129253_+\|zinc-metalloproteinase-Mpl	unknown	unknown	gnl\|CDD\|225768
NZ_APIG01000006.1\|WP_003725738.1\|137118_137679_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_APIG01000006.1\|WP_003725735.1\|133318_133651_-\|putative-heavy-metal-binding-protein	unknown	unknown	gnl\|CDD\|179228
NZ_APIG01000006.1\|WP_009917651.1\|137792_141332_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NZ_APIG01000006.1\|WP_031647994.1\|124600_125554_-\|phosphatidylinositol-specific-phospholipase-C	unknown	unknown	gnl\|CDD\|176497
NZ_APIG01000006.1\|WP_003740374.1\|121190_122564_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184643
NZ_APIG01000006.1\|WP_003734712.1\|131407_132277_+\|phosphatidylcholine-phospholipase-C	unknown	unknown	gnl\|CDD\|214813
NZ_APIG01000006.1\|WP_003725507.1\|118175_119384_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528

Protein	Function_ID	Function_description	E-value
NZ_APIG01000006.1\|WP_003722739.1\|134469_135411_-\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	0
NZ_APIG01000006.1\|WP_003722726.1\|120495_120804_+\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	5.03804e-54
NZ_APIG01000006.1\|WP_003722729.1\|123614_124328_-\|listeriolysin-O-transcriptional-regulator-PrfA	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	9.59942e-12
NZ_APIG01000006.1\|WP_003725733.1\|132348_132672_+\|DUF5502-family-protein	gnl\|CDD\|340321	pfam17606, DUF5502, Family of unknown function (DUF5502). This is a family of unknown function found in Listeria.	2.43993e-44
NZ_APIG01000006.1\|WP_003722728.1\|122614_123571_+\|ribose-phosphate-diphosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_APIG01000006.1\|WP_003725737.1\|136427_137012_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.9401e-09
NZ_APIG01000006.1\|WP_003722725.1\|120068_120377_+\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	2.92652e-53
NZ_APIG01000006.1\|WP_003740377.1\|133717_134437_-\|DNA-alkylation-repair-protein	gnl\|CDD\|378033	pfam08713, DNA_alkylation, DNA alkylation repair enzyme. Proteins in this family are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein in this family shows it to adopt a supercoiled alpha helical structure.	9.75553e-22
NZ_APIG01000006.1\|WP_003722723.1\|117486_118179_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	7.27113e-121
NZ_APIG01000006.1\|WP_003728174.1\|125796_127386_+\|cholesterol-dependent-cytolysin-listeriolysin-O	gnl\|CDD\|366559	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin.	7.22171e-179
NZ_APIG01000006.1\|WP_003740379.1\|141362_142952_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	2.53346e-131
NZ_APIG01000006.1\|WP_003725734.1\|132804_133266_+\|YehR-family-lipoprotein	gnl\|CDD\|227145	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown].	1.52192e-59
NZ_APIG01000006.1\|WP_009917654.1\|127720_129253_+\|zinc-metalloproteinase-Mpl	gnl\|CDD\|225768	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism].	1.15116e-139
NZ_APIG01000006.1\|WP_003725738.1\|137118_137679_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	1.72721e-108
NZ_APIG01000006.1\|WP_003725735.1\|133318_133651_-\|putative-heavy-metal-binding-protein	gnl\|CDD\|179228	PRK01119, PRK01119, putative heavy metal-binding protein.	8.98192e-61
NZ_APIG01000006.1\|WP_009917651.1\|137792_141332_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_APIG01000006.1\|WP_031647994.1\|124600_125554_-\|phosphatidylinositol-specific-phospholipase-C	gnl\|CDD\|176497	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated PI-analogues, PIP2 and PIP, to generate two important second messengers, InsP3 and DAG. InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. In contrast, bacterial PI-PLCs contain a single catalytic domain. Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. They participate in Ca2+-independent PI metabolism. They are characterized as phosphatidylinositol-specific phospholipase C (EC 4.6.1.13) that selectively hydrolyze PI, not PIP or PIP2. The TIM-barrel type catalytic domain in bacterial PI-PLCs is very similar to the one in eukaryotic PI-PLCs, in which the catalytic domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. The catalytic mechanism of both prokaryotic and eukaryotic PI-PLCs is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This superfamily also includes a distinctly different type of eukaryotic PLC, glycosylphosphatidylinositol-specific phospholipase C (GPI-PLC), an integral membrane protein characterized in the protozoan parasite Trypanosoma brucei. T. brucei GPI-PLC hydrolyzes the GPI-anchor on the variant specific glycoprotein (VSG), releasing dimyristyl glycerol (DMG), which may facilitate the evasion of the protozoan to the host#s immune system. It does not require Ca2+ for its activity and is more closely related to bacterial PI-PLCs, but not mammalian PI-PLCs.	1.59851e-111
NZ_APIG01000006.1\|WP_003740374.1\|121190_122564_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184643	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NZ_APIG01000006.1\|WP_003734712.1\|131407_132277_+\|phosphatidylcholine-phospholipase-C	gnl\|CDD\|214813	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.	6.38793e-86
NZ_APIG01000006.1\|WP_003725507.1\|118175_119384_+\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	5.06393e-62

>NZ_APIG01000006.1|WP_009917654.1|127720_129253_+|zinc-metalloproteinase-Mpl
MKSKLICIIMVIAFQAHFNMAVKADSVGEERLRNNIQAKRNPADLKALPDSCEAKDFYKNFKILDMTKDKLGVTHYTLALSSEGYLTDNDEIKVHVTPDNKITFINGDLQQGQLRITNQIKITEKNAIEKAFEAIGQSEAHVKSYIGNPVKEKEIIINSRTKRLVYNIKLIFAEPEVASWIIQVDAETGAILKKQNMLSEVERADTHKDFQALGKGANRLLQRPLHVMKINDLFYLVDRTHKGLIRTFDLNHKTDASFGKVVSNKTNMFTDPEFSSAVDAHFYASEVYDYYKNVHQLESLDGKGGEIDSFVHYGLNCNNAFWDGREILYGDGDKKNFKPFSCAKTIVGHELTHAVIQYSAGLEYEGQSGALNESFADVFGYFIAPNHWLIGEDVCVRGLRDGRIRSIKDPDKYNQAAHMKDYESLPITEEGDWGGVHFNSGIPNKAAYNTITKLGKEKTEQLYFRALKYYLTKKAQFTDAKKALQQAAKDLYGEDASKKVAEAWEAVGVN
>NZ_APIG01000006.1|WP_003728174.1|125796_127386_+|cholesterol-dependent-cytolysin-listeriolysin-O
MKKIMLVFITLILVSLPIAQQTEAKDASAFNKENLISSMAPPASPPASPKTPIEKKHADEIDKYIQGLDYNKNNVLVYHGDAVTNVPPRKGYKDGNEYIVVEKKKKSINQNNADIQVVNAISSLTYPGALVKANSELVENQPDVLPVKRDSLTLSIDLPGMTNQDNKIVVKNATKSNVNNAVNTLVERWNEKYAQAYPNVSAKIDYDDEMAYSESQLIAKFGTAFKAVNNSLNVNFGAISEGKMQEEVISFKQIYYNVNVNEPTRPSRFFGKAVTKEQLQALGVNAENPPAYISSVAYGRQVYLKLSTNSHSTKVKAAFDAAVSGKSVSGDVELTNIIKNSSFKAVIYGGSAKDEVQIIDGNLGDLRDILKKGATFNRETPGVPIAYTTNFLKDNELAVIKNNSEYIETTSKAYTDGKINIDHSGGYVAQFNISWDEINYDPEGNEIVQHKNWSENNKSKLAHFTSSIYLPGNARNINVYAKECTGLAWEWWRTVIDDRNLPLVKNRNISIWGTTLYPKYSNSVDNPIE
>NZ_APIG01000006.1|WP_031647994.1|124600_125554_-|phosphatidylinositol-specific-phospholipase-C
MYKNYLQRTLVLVLCFILCFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTSLAALSIPGTHDTMSYNGDMTWTLTKPLAQTQTMSLYQQLEAGIRYIDIRAKDNLKIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKNVRGKILLLSENHTKKPLVINSHKFGMQFGASNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN
>NZ_APIG01000006.1|WP_003722729.1|123614_124328_-|listeriolysin-O-transcriptional-regulator-PrfA
MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
>NZ_APIG01000006.1|WP_003722728.1|122614_123571_+|ribose-phosphate-diphosphokinase
MSNEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNPVNQNLMELLIMIDALKRASAATINIVMPYYGYARQDRKARSREPITAKLVANLIETAGATRMITLDMHAPQIQGFFDIPIDHLNAVRLLSDYFSERHLGDDLVVVSPDHGGVTRARKMADRLKAPIAIIDKRRPRPNVAEVMNIVGNVEGKVCIIIDDIIDTAGTITLAAKALREAGATKVYACCSHPVLSGPAMKRIEESPIEKLVVTNSIALPEEKWIDKMEQLSVAALLGEAIVRVHENASVSSLFE
>NZ_APIG01000006.1|WP_003740374.1|121190_122564_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MSKRYAVVLAAGQGTRMKSKLYKVLHPVCGKPMVEHVVDQISTLNVDKVVTIVGHGAEKVQEHLAGKSEFVKQEEQLGTAHAVLQAKAELAGKDGVTLVVCGDTPLIEASTMEALLKYHHEKRAKATILTTVIEDPTGYGRIIRDDLGIVEKIVEHKDATEKEQRISEINTGTYCFDNKALFEALENVSNDNVQGEYYLPDVIKILKDSDEVVAAYRMESFEESLGVNDRIALAEASRLMQRRINENHMRNGVTLVNPENTYIDIDVKIGQDTVIEPGVMLHGETVIGDDCVVTSGSEIVNSVIGERVHVRTSSIFESKVGDDVQIGPYAHLRPESDIHDHVKIGNYVETKKAVVGEGTKLPHFIYMGDAEIGKNVNVGCGSIAVNYDGKNKAKTIIGDNVFVGCNSNLIAPVKVGDRAFIAAGSTITKDVPDDALGIARAKQDNKLGYAKHLNHGK
>NZ_APIG01000006.1|WP_003722726.1|120495_120804_+|septation-regulator-SpoVG
MQVTDVRLRRVETDGRMRAIASITLDEEFVVHDIRVIDGNNGLFVAMPSKRGVDGEFRDIAHPINSDTRAKIQEVVLAEYERVGEEEATAVTEEESESVSAE
>NZ_APIG01000006.1|WP_003722725.1|120068_120377_+|septation-regulator-SpoVG
MEITDVRLRRVETDGRMKAISSITIDGEFVIHDIRVIDGNEGLFVAMPSKRTPDGEFRDIAHPINSGTRAKIQEAVLAAYEVADEPAVNEESSADESIVEEN
>NZ_APIG01000006.1|WP_003725507.1|118175_119384_+|ABC-transporter-permease
MNVLQSMKMAWKQLKASKLRSFLTMLGIIIGVASVILLVSLGNGVTQEVDDQMGDLGSNLITVVNSSVNPNDKYTYDEVMKYQNIDGVKSVSPELSGQVNATFDYKNSSNKVIGTNDQYKAARSLEMKEGRFLLPIDTEYGQKVAVIGSTVASDLFGFGDPIGETIRLNGMPYKVVGVLKEKGASMMGSSDDQIFIPISSAQRLLKDTNVRTIYVETKSAEDVDFVVNTLESRLAIKFGDEKEQEKNASSAQMGPSYQVINQQEILNAFNTISTTLTTALGAIAAISLVVGGIGIMNIMLVSVSERTREIGIRKALGAKKRAILLQFLIESIVISVCGGIIGIIIGVSGALIFGSVAGISSGITAGTIIFSFVFSLCIGVIFGIAPANKASKLRPIDALRSE
>NZ_APIG01000006.1|WP_003722723.1|117486_118179_+|ABC-transporter-ATP-binding-protein
MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPSGSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNKLSEIRNKKIGFIFQQFNLLPKLSAFENVELPLIYAGLSVSAREKAAIECLEKVGLLEKRRNLPTQLSGGQQQRVAIARALAGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQDGKLFHEEATQA
>NZ_APIG01000006.1|WP_003734712.1|131407_132277_+|phosphatidylcholine-phospholipase-C
MKFKKVVLGMCLTASVLVFPVTIKASACCDEYLKPPAAPHDIDSKLPHKLSWSADNPTNTDVNTHYWLFKQAEKILAKDVDHMRANLMNELKNFDKQIAQGIYDADHKNPYYDTSTFLSHFYNPDKDNTYLPGFANAKITGAKYFNQSVADYREGKFDTAFYKLGLAIHYYTDISQPMHANNFTAISYPPGYHCAYENYVDTIKHNYQATEDMVVKRFCSNDVKEWLYENAKRAKADYPKIVNAKTKKSYLVGNSEWKKDTVEPTGARLRDSQQTLAGFLEFWSKKTNE
>NZ_APIG01000006.1|WP_003725733.1|132348_132672_+|DUF5502-family-protein
MYIKGRLIFFFVMFVIALCSVLILLIIKMSVWKEEPFNLSDAKEIECLGSCKIKNTNQKIHFFSIKKNLFEEKGNMAGILNEHERKGADKSIFIVILDDEKGIANEE
>NZ_APIG01000006.1|WP_003725734.1|132804_133266_+|YehR-family-lipoprotein
MKMLKKGTTVLFVMIMAVMLVACGDKEETKTYSLSQNGVDSKLTYTYKGDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKAIETLEVDYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQGYKEVSK
>NZ_APIG01000006.1|WP_003725735.1|133318_133651_-|putative-heavy-metal-binding-protein
MIVTTSPNIEGKQIIEYKKIVFGEVITGVNFMKDIGAGLRNFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDYEVLGADNGMLMVTASGTAVVIEAQDY
>NZ_APIG01000006.1|WP_003740377.1|133717_134437_-|DNA-alkylation-repair-protein
MLFLLYLIYSRGVTRTITFDQLNTELQALENPNTIKIFRNHGCPDSLDLYGLKIGDLKKIIRREKLTKNHELAVELIESNNSDLIYLGLLAINPDKITTEQIEKWNIIFRETWSQLTFGLASIVSKRDDALLFAKTWIESDYDLTKSMGWQIYSEHINNLPEAEALLQRAKETLQTETNRTRYSMNGFIITCGIYKDDLHEKAMEAAKSVGKVHVNLGNTACKVPDAISYIEKARNRTK
>NZ_APIG01000006.1|WP_003722739.1|134469_135411_-|L-lactate-dehydrogenase
MKDHQKIILVGDGAVGSSYAFACVNLSIGQEFGIIDIDKDRTIGDAMDLSHAVPFSTPKKIYSANYSDCHDADLVVVTAGTAQKPGETRLDLVNRNIKIMKGIVDEVMASGFDGIFLIASNPVDILTYATWKFSGLPKERVIGSGTSLDTARFRMSIADYLKVDARNVHGYILGEHGDTEFPAWSHTTVGGLPITEWISEDEQGAMDTIFVSVRDAAYEIINKKGATFYGVAAALARITKAILNNENAILPLSVYLDGHYGMNDIYIGAPAVVNRQGVRHIVEMNLNDKEKEQMKNSADTLKKVLDDAMKQID
>NZ_APIG01000006.1|WP_003725737.1|136427_137012_+|GNAT-family-N-acetyltransferase
MLDKSVPHISAIMVNHDATNYPEFHLPEGYSFCFYKDGLEEDWCRLQLETGQVLSMDSIRARFETEFGNEKEKLAKRCVFVEAPNGEIIGTAMLWDGNTFGEMASRIHWVAVLDSHGGKGIAKALLSKILGLNKSSFVYLTTQTGSYQAIYLYQKFGFEKYVGKTPENWKTVNFQEEKEAAWQIIENKIAEHQA
>NZ_APIG01000006.1|WP_003725738.1|137118_137679_+|aminoacyl-tRNA-hydrolase
MKLIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKSKFNGMTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRLRQKGSAGGHNGMKSIIQHVKTQEFNRIRVGVSRPLKGEVIHYVLGDFPKAEQPDIIAAIQKSADAIEDFAQTPFIEVMNKYNQK
>NZ_APIG01000006.1|WP_009917651.1|137792_141332_+|transcription-repair-coupling-factor
MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGIIDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIVKRLEKKMTHTLNELKENEDKQALVENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDYFPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLEANHSPKIYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKIKKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGEDKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREFEEAFPYQETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIESKKPKEEQKQIVPVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVHALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGTQLKITINVQNKPLKEWLYQVKSLAEKLRGAMKERASAEN
>NZ_APIG01000006.1|WP_003740379.1|141362_142952_+|polysaccharide-biosynthesis-protein
MPERSMKRLMKGAAWLTAASLISKILSAVYRVPFQNMVGDVGFYIFQQVYPIYGIAMTLALGGFPVVISKMLAEAEGDVRRQQIIMRAVSRMLRIVSIVIFAFLFLFANPIAIMMGDPALSELIRVISFVFLLMPQLAFMRGFFQGEGDMIPTAISQTVEQIIRVAIILIGAGLALHFNFDLYDAGSMAMSGAFFGGVSGIFILRHFYNKKVRLGEGIQPAVFTNKEEKVGIGRTFLRQSVAICVVSSMLILFQLVDSFQVYRLMSDSGIPDFIAKSLKGVYDRGQPILQLGLVISTGLALALVPMITAARVQDQQKELKRSVLLAIKITLILAGAETIGLIVIMRPLNQMLFQTPDGTFVLQLFMPAVFLSSLIIMLSSILQGFGKITVPAVGVGIGLIVKWVTGGILIPRLATVGASVSTCVGLLVILLICYVSLKQTIRVPFVEKTMLFRLIAALALMAVFPCLFEWLAPLNTRLGSAFQAIVSALVGGGIFLVFSLRYKLLGPKDFVFLPFGSKLLALSKLVARK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

47563 : 58292

Listeria_phage(40.0%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003728215.1\|47563_48016_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|48021_48357_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003724946.1\|48573_49002_+	hypothetical protein	A8ATZ8	Listeria_phage	3.9e-12	45.7
WP_003728213.1\|49013_49430_+	hypothetical protein	NA	NA	NA	NA
WP_003728212.1\|49709_50099_+	DUF5072 family protein	NA	NA	NA	NA
WP_003721744.1\|50111_50624_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003721745.1\|50671_50974_+	hypothetical protein	NA	NA	NA	NA
WP_003740367.1\|51015_51420_+	hypothetical protein	A0A097PAX1	Streptococcus_pyogenes_phage	8.2e-20	43.7
WP_003728211.1\|51406_53275_+	hypothetical protein	A0A097PAU2	Streptococcus_pyogenes_phage	4.5e-20	45.8
WP_003728210.1\|53271_54090_+\|tail	phage tail family protein	Q9T1A6	Listeria_phage	4.4e-44	35.5
WP_003728209.1\|54099_55236_+\|tail	phage tail protein	A0A0B5D0G3	Listeria_phage	2.2e-46	33.8
WP_003721751.1\|55225_55525_+	hypothetical protein	NA	NA	NA	NA
WP_003728208.1\|55539_56115_+	hypothetical protein	NA	NA	NA	NA
WP_003728207.1\|56129_56609_+	hypothetical protein	NA	NA	NA	NA
WP_003728206.1\|56605_57142_+	hypothetical protein	NA	NA	NA	NA
WP_003728205.1\|57160_57583_+\|holin	holin family protein	Q2I8E7	Bacillus_phage	8.6e-28	46.3
WP_003724957.1\|57563_58292_+	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGH1	Paenibacillus_phage	1.3e-34	42.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_APIG01000015

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_APIG01000015_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_APIG01000015_1

3675-4259

Orphan

Consensus_repeat	Method
CATATNAGTTACTGAACTNGTATCAAAATTACTTACATC	CRT

7 spacers

The CRISPR arrays of NZ_APIG01000015_1

>merge|NZ_APIG01000015|1|3675-4259|CRT
CATGTTAGTCACTGAACTGGTATCAAAGGTACTTAAATCAAGCTTCTCCAGTTTTTCATTATCAGAAAACATGGCAGCCATATTAGTTACTGAACTCGTATCAAAATTACTTACATCTAACGCTTCAAGACTAGTACAACCAGCAAACATGGCACGCATATCAGTTACTAAGCTCGTATTAAAATTACTTACATCCAACTTCTCAAGGGCGCTACAATTTCTAAACATTTGAACCATTGCAGTAGCGGAACTGGTATCGAAATTACTTACATCTAGTTTCTTCAGTTTTTCACAGCCATTAAACACTCTATACATATCAGTTACTGAACTCGTATCAAAATTACTTACATCCAGCTCTTCAAGACTAGTACAATCTTCAAACATGGCATACATATTAGTTACTGAACCGGTATCAAGGTTGCTTACATCCAGCACCTCAAGGTTTCTATTATCATAAAACATGTAAGACATATTAGTTACTGAACTCGTATCAAAATGACTTACATCCAGTTCCTCAAGTGCCCTACAGCTGTTAAACATATCCCACATAGTAGTTACCGCACTAGTATCAAGACCACTCAAATC

>NZ_APIG01000015|1|1|3675-4259|CRT
CATGTTAGTCACTGAACTGGTATCAAAGGTACTTAAATC	AAGCTTCTCCAGTTTTTCATTATCAGAAAACATGGCAGC
CATATTAGTTACTGAACTCGTATCAAAATTACTTACATC	TAACGCTTCAAGACTAGTACAACCAGCAAACATGGCACG
CATATCAGTTACTAAGCTCGTATTAAAATTACTTACATC	CAACTTCTCAAGGGCGCTACAATTTCTAAACATTTGAAC
CATTGCAGTAGCGGAACTGGTATCGAAATTACTTACATC	TAGTTTCTTCAGTTTTTCACAGCCATTAAACACTCTATA
CATATCAGTTACTGAACTCGTATCAAAATTACTTACATC	CAGCTCTTCAAGACTAGTACAATCTTCAAACATGGCATA
CATATTAGTTACTGAACCGGTATCAAGGTTGCTTACATC	CAGCACCTCAAGGTTTCTATTATCATAAAACATGTAAGA
CATATTAGTTACTGAACTCGTATCAAAATGACTTACATC	CAGTTCCTCAAGTGCCCTACAGCTGTTAAACATATCCCA
CATAGTAGTTACCGCACTAGTATCAAGACCACTCAAATC

>NZ_APIG01000015.1|WP_012681107.1|951_2712_-|BspA-family-leucine-rich-repeat-surface-protein
MKKFSMRVVLIISVLFIAFGSANVSIAQERDTTNKLPEEELGSLDTSNIIAEEVAQEKPAEVEQLEEIPTTDELMQNPDVLEKSVADSDDPDLTVVSSGDFWTIYRNTVNNEYNLRMFGNVPSSRPTAWNSYLKSIKHIEIEEATLTGSFASYFRGTDFPVLESVRIEQCNLSGVTSFEMAFYNSGIEKVIIRDNDYPKAPSLLTATQYMFSLCRNLSELDLSGLDTSAVTNMYAMFQNCTSLEELDLSNFDTSSATNMYSMFSGCRSLEKLDVSNFDTSSVAHMQFMFEKCSILEELDLSNFDTSSVTNMSYMFQLCPALKSLYLDNFTDAAIMTGMFAGTTSLTYLFVSHNLSTFNNLENTSWYDEKNWVQFSNLSQLQTYHRQQSEPIGYRKGAFLSLTMDAMGGEFEDAEEQKVQNKISGEYWEEVIPVKEGHYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVIIPASISLNEASELKVQGINRGSKTLSVGLNYEETTISESNKLTLSNTADTTVRCLAPMSWDGSETNPEKAILTLAPGSEITEGDAVMEIKSPENIQAGKYTGNVVFSIKYE
>NZ_APIG01000015.1|WP_003728455.1|412_886_-|hypothetical-protein
MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDHSAVEWNGKKQKDTSGEENTIAIPGFEKVTLYANETTQAVNFHNPEINDCYFKISLIHPDGSVLWISDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NZ_APIG01000015.1|WP_039382768.1|0_393_-|hypothetical-protein
MNKLVLSTLSVAAMGMVFFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELQRVGATSDVITSSFKSNNSVVPMANPVIGSFSGYAMEET

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_APIG01000019

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr_ID: NZ_APIG01000019.1|WP_003731276.1|4258_4510_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_APIG01000019.1|WP_003731276.1|4258_4510_+|hypothetical-protein

4258_4510_+

83 aa aa

AcrIIA12

hit_Aca_id	identity	query_coverage	hit_coverage
anti_CRISPR3641\|WP_003731276.1\|AcrIIA12\|II-A\|Verified\|Listeria-monocytogenes	1.0	1	1.0

5. NZ_APIG01000003

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_APIG01000003_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_APIG01000003_1

5203-7813

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR

39 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_APIG01000003_1

>merge|NZ_APIG01000003|1|5203-7813|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAACCCCTGTTAGCGATGGGGGGGAAGAATATTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACTCAATCAAAACAGGTATAAACTCTTTGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCATCGATAGATTAATTCCATCGTATTTAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACTTGTCATTGGAGAAATACTTTCATCAGTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAAGACCTAAGTTATATTCCAAGTTTAGACGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCATTTATGCCCCGCAAGTATTCTTTATAAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTGATGGAGCAATTGAATTAGAGAGTTTTGTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTACCGCGCTTCATGAACTGGGGTACGATGCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACATCTGTTTTATAATATTTAACGTTTCCCACGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTGCTTCACTCGAAAAGTATCAATTCGATGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTCACCCATTTATTACCATCTTTGACAACAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCGGTTAAGTACCTGTATAGATTCTCATCAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTGCTGACGTGAACACAGCACCTGCAGGTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAATCCGGAAATCCTTGCAGTCTCCAACACTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAATCGACCGTTTTACCTTTCGCCATGACAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTACACCCTCTGCGGGGTTAATTGGGATTACGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCACAATACAAATCACTGTAGTGGATAGTGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGATTCATGAAGTAATATTTCTTGTTTATTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAACTGTGGTAATCAATGTTGTTCAGTAAGTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCTAAGCCATTCTGAAATGTTGTGTGTTTCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGAGCAAGAAATACAGTCATCTATTGACCAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTAAAAGATGTGTACGCTAAATATTGCACTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAACGTTCGATCGCATCGTGAAAAAGAAAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGCCTACCACCAACGGGTGACGGCACAACCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTACTTGATGTCAAACATGTAACGCGGAAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAATACGTCTCTCTTGATTTTTATACGAGTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGAGGTCATCAAAGAAGACGATCATACGTGCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTGTTTTCAATTGTTTCTAGTTCTTCATTAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGTTTAAAGATGCGGAAGAATTCGACCAAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCTAAGTGCGTCTGTAGTCTCGTTGCCTCTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCGCAAGCCGGGATTACCCCCACGAACCTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCATATCTAAAATTTGACCTTGACAACGTGAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGGAAATACCGACTTGGACTATCGTGTACACGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTTCTGATTGGGTTTGATGAATTGACTCGCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGGGCTTTTATTGTGGATATAGAAGTCTGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAACAGAAATGAAGGATGGTGAAGAAGTTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCATCCACAACATCCCGCAACATGAATTTAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCATAGTTTTAAGTTCTTGGTCTGACGTGGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAGTTTCGTTGCAGTTTCAACAGAATCGCCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_APIG01000003|1|1|5203-7813|CRISPRCasFinder
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAAC	CCCTGTTAGCGATGGGGGGGAAGAATATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTCAATCAAAACAGGTATAAACTCTTTGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCATCGATAGATTAATTCCATCGTATTTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTTGTCATTGGAGAAATACTTTCATCAGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGACCTAAGTTATATTCCAAGTTTAGAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CATTTATGCCCCGCAAGTATTCTTTATAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGATGGAGCAATTGAATTAGAGAGTTTTGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACCGCGCTTCATGAACTGGGGTACGATGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATCTGTTTTATAATATTTAACGTTTCCCAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGCTTCACTCGAAAAGTATCAATTCGATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTCACCCATTTATTACCATCTTTGACAACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGGTTAAGTACCTGTATAGATTCTCATCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGCTGACGTGAACACAGCACCTGCAGGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATCCGGAAATCCTTGCAGTCTCCAACACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAATCGACCGTTTTACCTTTCGCCATGACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACACCCTCTGCGGGGTTAATTGGGATTAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCACAATACAAATCACTGTAGTGGATAGTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GATTCATGAAGTAATATTTCTTGTTTATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACTGTGGTAATCAATGTTGTTCAGTAAGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTAAGCCATTCTGAAATGTTGTGTGTTTCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAGCAAGAAATACAGTCATCTATTGACCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTAAAAGATGTGTACGCTAAATATTGCACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAACGTTCGATCGCATCGTGAAAAAGAAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCCTACCACCAACGGGTGACGGCACAACC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTACTTGATGTCAAACATGTAACGCGGAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATACGTCTCTCTTGATTTTTATACGAGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAGGTCATCAAAGAAGACGATCATACGTGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGTTTTCAATTGTTTCTAGTTCTTCATTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTTTAAAGATGCGGAAGAATTCGACCAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCTAAGTGCGTCTGTAGTCTCGTTGCCTCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGCAAGCCGGGATTACCCCCACGAACCTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CATATCTAAAATTTGACCTTGACAACGTGAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGAAATACCGACTTGGACTATCGTGTACAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTTCTGATTGGGTTTGATGAATTGACTCGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGGGCTTTTATTGTGGATATAGAAGTCTGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAACAGAAATGAAGGATGGTGAAGAAGTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CATCCACAACATCCCGCAACATGAATTTAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCATAGTTTTAAGTTCTTGGTCTGACGTGG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAGTTTCGTTGCAGTTTCAACAGAATCGCC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_APIG01000003|1|1|5203-7813|CRT
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAAC	CCCTGTTAGCGATGGGGGGGAAGAATATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTCAATCAAAACAGGTATAAACTCTTTGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCATCGATAGATTAATTCCATCGTATTTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTTGTCATTGGAGAAATACTTTCATCAGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGACCTAAGTTATATTCCAAGTTTAGAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CATTTATGCCCCGCAAGTATTCTTTATAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGATGGAGCAATTGAATTAGAGAGTTTTGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACCGCGCTTCATGAACTGGGGTACGATGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATCTGTTTTATAATATTTAACGTTTCCCAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGCTTCACTCGAAAAGTATCAATTCGATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTCACCCATTTATTACCATCTTTGACAACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGGTTAAGTACCTGTATAGATTCTCATCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGCTGACGTGAACACAGCACCTGCAGGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATCCGGAAATCCTTGCAGTCTCCAACACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAATCGACCGTTTTACCTTTCGCCATGACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACACCCTCTGCGGGGTTAATTGGGATTAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCACAATACAAATCACTGTAGTGGATAGTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GATTCATGAAGTAATATTTCTTGTTTATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACTGTGGTAATCAATGTTGTTCAGTAAGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTAAGCCATTCTGAAATGTTGTGTGTTTCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAGCAAGAAATACAGTCATCTATTGACCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTAAAAGATGTGTACGCTAAATATTGCACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAACGTTCGATCGCATCGTGAAAAAGAAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCCTACCACCAACGGGTGACGGCACAACC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTACTTGATGTCAAACATGTAACGCGGAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATACGTCTCTCTTGATTTTTATACGAGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAGGTCATCAAAGAAGACGATCATACGTGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGTTTTCAATTGTTTCTAGTTCTTCATTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTTTAAAGATGCGGAAGAATTCGACCAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCTAAGTGCGTCTGTAGTCTCGTTGCCTCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGCAAGCCGGGATTACCCCCACGAACCTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CATATCTAAAATTTGACCTTGACAACGTGAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGAAATACCGACTTGGACTATCGTGTACAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTTCTGATTGGGTTTGATGAATTGACTCGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGGGCTTTTATTGTGGATATAGAAGTCTGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAACAGAAATGAAGGATGGTGAAGAAGTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CATCCACAACATCCCGCAACATGAATTTAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCATAGTTTTAAGTTCTTGGTCTGACGTGG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAGTTTCGTTGCAGTTTCAACAGAATCGCC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_APIG01000003|1|1|5401-7813|PILER-CR
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACTTGTCATTGGAGAAATACTTTCATCAGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGACCTAAGTTATATTCCAAGTTTAGAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CATTTATGCCCCGCAAGTATTCTTTATAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGATGGAGCAATTGAATTAGAGAGTTTTGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACCGCGCTTCATGAACTGGGGTACGATGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATCTGTTTTATAATATTTAACGTTTCCCAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGCTTCACTCGAAAAGTATCAATTCGATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTCACCCATTTATTACCATCTTTGACAACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGGTTAAGTACCTGTATAGATTCTCATCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGCTGACGTGAACACAGCACCTGCAGGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATCCGGAAATCCTTGCAGTCTCCAACACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAATCGACCGTTTTACCTTTCGCCATGACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACACCCTCTGCGGGGTTAATTGGGATTAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCACAATACAAATCACTGTAGTGGATAGTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GATTCATGAAGTAATATTTCTTGTTTATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACTGTGGTAATCAATGTTGTTCAGTAAGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTAAGCCATTCTGAAATGTTGTGTGTTTCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAGCAAGAAATACAGTCATCTATTGACCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTAAAAGATGTGTACGCTAAATATTGCACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAACGTTCGATCGCATCGTGAAAAAGAAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCCTACCACCAACGGGTGACGGCACAACC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTACTTGATGTCAAACATGTAACGCGGAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATACGTCTCTCTTGATTTTTATACGAGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAGGTCATCAAAGAAGACGATCATACGTGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGTTTTCAATTGTTTCTAGTTCTTCATTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTTTAAAGATGCGGAAGAATTCGACCAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCTAAGTGCGTCTGTAGTCTCGTTGCCTCTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCGCAAGCCGGGATTACCCCCACGAACCTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCATATCTAAAATTTGACCTTGACAACGTGAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGGAAATACCGACTTGGACTATCGTGTACACGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTTCTGATTGGGTTTGATGAATTGACTCGCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGGGCTTTTATTGTGGATATAGAAGTCTGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAACAGAAATGAAGGATGGTGAAGAAGTTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCATCCACAACATCCCGCAACATGAATTTAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCATAGTTTTAAGTTCTTGGTCTGACGTGGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAGTTTCGTTGCAGTTTCAACAGAATCGCC
	TCGCAAGCCGGGATTACCCCCACGAACCTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CATATCTAAAATTTGACCTTGACAACGTGAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGAAATACCGACTTGGACTATCGTGTACAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTTCTGATTGGGTTTGATGAATTGACTCGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGGGCTTTTATTGTGGATATAGAAGTCTGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAACAGAAATGAAGGATGGTGAAGAAGTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CATCCACAACATCCCGCAACATGAATTTAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCATAGTTTTAAGTTCTTGGTCTGACGTGG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAGTTTCGTTGCAGTTTCAACAGAATCGCC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_APIG01000003|1|2|7183-7813|PILER-CR
	ACTTGTCATTGGAGAAATACTTTCATCAGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAGACCTAAGTTATATTCCAAGTTTAGAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CATTTATGCCCCGCAAGTATTCTTTATAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGATGGAGCAATTGAATTAGAGAGTTTTGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACCGCGCTTCATGAACTGGGGTACGATGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATCTGTTTTATAATATTTAACGTTTCCCAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGCTTCACTCGAAAAGTATCAATTCGATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTCACCCATTTATTACCATCTTTGACAACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CGGTTAAGTACCTGTATAGATTCTCATCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGCTGACGTGAACACAGCACCTGCAGGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATCCGGAAATCCTTGCAGTCTCCAACACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAATCGACCGTTTTACCTTTCGCCATGACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TACACCCTCTGCGGGGTTAATTGGGATTAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCACAATACAAATCACTGTAGTGGATAGTG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GATTCATGAAGTAATATTTCTTGTTTATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACTGTGGTAATCAATGTTGTTCAGTAAGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTAAGCCATTCTGAAATGTTGTGTGTTTCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAGCAAGAAATACAGTCATCTATTGACCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTAAAAGATGTGTACGCTAAATATTGCACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAACGTTCGATCGCATCGTGAAAAAGAAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCCTACCACCAACGGGTGACGGCACAACC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTACTTGATGTCAAACATGTAACGCGGAAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATACGTCTCTCTTGATTTTTATACGAGTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAGGTCATCAAAGAAGACGATCATACGTGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGTTTTCAATTGTTTCTAGTTCTTCATTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTTTAAAGATGCGGAAGAATTCGACCAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCTAAGTGCGTCTGTAGTCTCGTTGCCTCTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCGCAAGCCGGGATTACCCCCACGAACCTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCATATCTAAAATTTGACCTTGACAACGTGAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGGAAATACCGACTTGGACTATCGTGTACACGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTTCTGATTGGGTTTGATGAATTGACTCGCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGGGCTTTTATTGTGGATATAGAAGTCTGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAACAGAAATGAAGGATGGTGAAGAAGTTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCATCCACAACATCCCGCAACATGAATTTAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCATAGTTTTAAGTTCTTGGTCTGACGTGGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAAGTTTCGTTGCAGTTTCAACAGAATCGCC
	TCGCAAGCCGGGATTACCCCCACGAACCTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CATATCTAAAATTTGACCTTGACAACGTGAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGAAATACCGACTTGGACTATCGTGTACAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTTCTGATTGGGTTTGATGAATTGACTCGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGGGCTTTTATTGTGGATATAGAAGTCTGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAACAGAAATGAAGGATGGTGAAGAAGTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CATCCACAACATCCCGCAACATGAATTTAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCATAGTTTTAAGTTCTTGGTCTGACGTGG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AAGTTTCGTTGCAGTTTCAACAGAATCGCC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_APIG01000003.1\|WP_003727710.1\|2898_3750_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381359
NZ_APIG01000003.1\|WP_003727703.1\|15429_15867_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_APIG01000003.1\|WP_003727709.1\|4315_4678_-\|hypothetical-protein	unknown	unknown	unknown
NZ_APIG01000003.1\|WP_003726075.1\|15015_15408_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_APIG01000003.1\|WP_003727712.1\|34_1063_-\|P-loop-NTPase	unknown	unknown	gnl\|CDD\|378455
NZ_APIG01000003.1\|WP_003728530.1\|16813_17611_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_APIG01000003.1\|WP_003727711.1\|1331_2858_+\|GW-domain-containing-glycosaminoglycan-binding-protein	unknown	unknown	gnl\|CDD\|224619
NZ_APIG01000003.1\|WP_003727704.1\|14312_14792_-\|hypothetical-protein	unknown	unknown	unknown
NZ_APIG01000003.1\|WP_003727705.1\|9798_13803_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_APIG01000003.1\|WP_003726076.1\|16061_16808_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_APIG01000003.1\|WP_003727707.1\|7941_8604_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_APIG01000003.1\|WP_003726061.1\|3771_4194_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NZ_APIG01000003.1\|WP_003723648.1\|8593_8935_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_APIG01000003.1\|WP_003727706.1\|8931_9798_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_APIG01000003.1\|WP_009917684.1\|17613_18480_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237454

Protein	Function_ID	Function_description	E-value
NZ_APIG01000003.1\|WP_003727710.1\|2898_3750_-\|aldo/keto-reductase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	2.69962e-170
NZ_APIG01000003.1\|WP_003727703.1\|15429_15867_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.08607e-102
NZ_APIG01000003.1\|WP_003726075.1\|15015_15408_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	3.78102e-86
NZ_APIG01000003.1\|WP_003727712.1\|34_1063_-\|P-loop-NTPase	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	1.70792e-114
NZ_APIG01000003.1\|WP_003728530.1\|16813_17611_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	6.0076e-53
NZ_APIG01000003.1\|WP_003727711.1\|1331_2858_+\|GW-domain-containing-glycosaminoglycan-binding-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	1.89046e-69
NZ_APIG01000003.1\|WP_009917684.1\|17613_18480_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237454	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
NZ_APIG01000003.1\|WP_003727705.1\|9798_13803_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_APIG01000003.1\|WP_003726076.1\|16061_16808_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	3.28185e-128
NZ_APIG01000003.1\|WP_003727707.1\|7941_8604_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.92136e-112
NZ_APIG01000003.1\|WP_003726061.1\|3771_4194_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.55324e-42
NZ_APIG01000003.1\|WP_003723648.1\|8593_8935_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.60762e-45
NZ_APIG01000003.1\|WP_003727706.1\|8931_9798_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.3879e-135

>NZ_APIG01000003.1|WP_003727709.1|4315_4678_-|hypothetical-protein
MKKTSIIFTFCALLLTACSTTTKETPRQTTEATGTIEQVETESILIKNFKIKNDNNTPELSVRFHISEKYHDETGNKIKRTELNKNDNIKIILTKDFPIQETSPAQIDPKYIQKIILLNK
>NZ_APIG01000003.1|WP_003726061.1|3771_4194_-|MerR-family-transcriptional-regulator
MNIKQAADMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDLNWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKKVRELLVYKIDSYDSHIAQFKAGELNADNVEKLWKRDKF
>NZ_APIG01000003.1|WP_003727710.1|2898_3750_-|aldo/keto-reductase
MKTVKLNNGVEVPILGFGTYQITDAAEAEQAVKDAIKTGYRHIDTAQSYMNEEAVGRGIVASGVDRKELFITTKIWVENVSYKGVMSSFDRSLKRLGLDYIDLLLIHQPFNDVYGAWIAMEELQASGKIRAIGVSNFSPDRVIDLAAFNEVTPQVNQIEVNPFQQQAANLAVLRKEGVTIEAWAPFAEGKNDIFNNPVLTKIGAKYGKSAAQVILRWLVEQDIIVLAKSVKPERMAQNLAIFDFELTEADKGEIASLDQGESQFFSHADPEMVKWMASRKLNV
>NZ_APIG01000003.1|WP_003727711.1|1331_2858_+|GW-domain-containing-glycosaminoglycan-binding-protein
MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTAQVNLTTSQQAFIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSNNLFGIKGTYKGKSVSMGTMEASGSTTANFRVYPSWKESIEDHTALITENARYQDAVGETNYRKALQAIKDGGYATDPDYVSKLVAIIERYNLDKYDVIYDKIESNQSLAAIGTVAENKEQEVIWSAPYNTENANKIGTLENYLGRNLEISWEAKTEKGLWYFIRENNKDIGWINSNALKISYHQKEDENVHLTKYVDDLSAHVYRLPSPEKQFDNGTIAKYDRKALEVDKKTTRGGYAWFRISEGEKVIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATDNVWTAPFNTKNAEKLAPLADYDNEKLELVTRAKAGNTLWYQFKVDGKLVGWASEKDLNVFYTPAKEEPVKQVAYVKDPTAKLYNKPVESTSTNPKAVGFYYGKLLAVDKTATILGEDWLHLKDRQNSLGWIKAIDINS
>NZ_APIG01000003.1|WP_003727712.1|34_1063_-|P-loop-NTPase
MLNEQQITRLLYRLQDPVLEASLEETEGVLEVQVLKETANIKIALADPAVETDHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSEASETKFLAIASGKGGVGKSTVSANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPRKENGQIIPVETHGIQMISMDFFVEQGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGTGDVALDIHTLIPKCNELIVTTPHYAAASVASRAGYMAAKNNHKIIGVIENMSYLTLADGQVLKVFGQGGGEKVAADLETQLLIQLPIEQPEPNGNGYVSALFNSSSTSGKAYKTLAEKIIPYLS
>NZ_APIG01000003.1|WP_003727707.1|7941_8604_-|type-II-A-CRISPR-associated-protein-Csn2
MNFNFKLLDDPIQIEDSTIFVIEDVRVFANVTKFFYQYEETEELTIFDAKHQPLKSSELMLITDVLGHDINSAATLKLIYVDLEQQLNEKPEVKSMIDKLTATISELIGYELLEHELDLEEDEITVIELFKALGIKIETKSDTVFEKLIEIVQVYKYLSKKKLLVLINVCSYLTEEELLELRRYITLYQVKVLFIEPRKIKGSPQVTLDSDYFLHVENSV
>NZ_APIG01000003.1|WP_003723648.1|8593_8935_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMLLMFDMPTDTAKERKAYRQFRRFILSEGFIMHQYSVYSKILLNGTASKAMLARLKQQNPKKGLITLLTVTEKQFARMVYLSGEQNKSIGNSDARLVFLGDDADEF
>NZ_APIG01000003.1|WP_003727706.1|8931_9798_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVVVNSHSKLSYKNQHLVFKSAYQQEMIHLSEIDVLILETTDITLTTMLINCLVAENILILFCDDKRLPIGKVLPFYGRHDSSLQLTKQLEWDAELKAAVWTEIISQKILNQSTYLSMLNYDEKASSLINLHEALAVFDPTNREGHAARIYFNQLFGNDFTREQENDINSGLNYGYTLLLSIFARELVKSGCMTQFGLKHANQFNDFNLASDLMEPFRPLVDQIVYEKRNEDFQVIKRSLFELFTKQFDYNDQHMFLTNIASDYTKKIVKVLNEEREGVPEFRI
>NZ_APIG01000003.1|WP_003727705.1|9798_13803_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKNPYTIGLDIGTNSVGWAVLTDQYDLVKRKMKVAGNSDKKQIKKNFWGVRLFDDGQTAVDRRMNRTARRRIERRRNRISYLQEIFAVEMANIDANFFCRLNDSFYVDSEKRNSRHPFFATIEEEVAYHKNYRTIYHLREELVNSSEKADLRLVYLALAHIIKYRGNFLIEGALDTKNTSVDEVYKQFIQTYNQVFMSNIEEGALAKVEENTEVASILAGKFTRREKFERILRLYPGEKSTGMFAQFISLIVGNKGNFQKVFNLVEKTDIECAKDSYEEDLEALLAIIGDEYAELFVAAKNTYNAVVLSSIITVTATETNAKLSASMIERFDAHEKELGELKAFIKLHLPKQYQEIFNNAEIDGYAGYIDGKTKQVDFYKYLKTTLENVEGADYFITKIEEENFLRKQRTFDNGVIPHQLHLEELEAILHQQAKYYPFLREGYDKIKSLVTFRIPYFVGPLANGQSEFAWLTRKDDGEIRPWNIEEKVDFGKSAVDFIEKMTNKDTYLPKENVLPKHSLCYQKYMVYNELTKIRYIDDQGKTNYFSGREKQQIFNDLFKQKRKVKKKDLELFLRNINHIESPTIEGLEDSFNASYATYHDLLKVGLKQEILDNPLNTEILEDIVKILTVFEDKRMIKEQLEQFSDVLDGVVLKKLERRHYTGWGRLSAKLLVGIRDKQSHLTILDYLMNDDGLNRNLMQLINDSNLSFKSIIEKEQVSTTDKDLQSIVADLAGSPAIKKGILQSLKIVDELVSIMGYPPQTIVVEMARENQTTGKGKNNSKPRYKSLEKAIKDFGSQILKEHPTDNQELKNNRLYLYYLQNGKDIYTGQELDIHNLSNYDIDHIVPQSFITDNSIDNLVLTSSAGNREKGGDVPPLEIVRKRKVFWEKLYQGNLMSKRKFDYLTKAERGGLTEADKARFIHRQLVETRQITKNVANILHQRFNKETDNHGNTMEQVRIVTLKSALVSQFRKQFQLYKVREVNDYHHAHDAYLNGVVANTLLKVYPQLEPEFVYGEYHQFDWFKANKATAKKQFYTNIMLFFAQKERIIDENGEILWDKKYLETIKKVLDYRQINIVKKTEIQKGEFSKATIKPKGNSSKLIPRKENWDPMKYGGLDSPNMAYAVIIEHAKGKKKIVIEKKLIQINIMERKMFEKDEEAFLEEKGYHQPKVLTKLPKYTLYECEKGRRRMLSSANEAQKGNQLVLSNHLVSLLYHAKNCEASDGKSLKYIEAHRETFSELLAQVSEFATKYTLADANLSKINNLFEQNKEGDIKAIAQSFVDLMAFNAMGAPASFKFFEATIDRKRYTNLKELLSSTIIYQSITGLYESRKRLDD
>NZ_APIG01000003.1|WP_003727704.1|14312_14792_-|hypothetical-protein
MKGLIINKMHSGYFTNMSEVFNLLPEEELNCMWLVSSYECNIYPFEQIPFEKEYVWMKGTELKEILNQEEVMFIWGNFTSYPSNTKLKDILKYPIPFADGNSDLWKKDVHLSNPLSNTELISWDGSIFLTLSKNTTLIEGLKDNYPDSEDLSTYNSDID
>NZ_APIG01000003.1|WP_003726075.1|15015_15408_-|30S-ribosomal-protein-S9
MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDPRMKERKKYGLKGARRAPQFSKR
>NZ_APIG01000003.1|WP_003727703.1|15429_15867_-|50S-ribosomal-protein-L13
MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQQPEVYELRG
>NZ_APIG01000003.1|WP_003726076.1|16061_16808_-|tRNA-pseudouridine(38-40)-synthase-TruA
MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQGLYLWRVDYE
>NZ_APIG01000003.1|WP_003728530.1|16813_17611_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFAYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLTNGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRILRWRFADTFLLISLAVLSGLLFWLRS
>NZ_APIG01000003.1|WP_009917684.1|17613_18480_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MEIKLEQLGYCYQKNSPFEKRALLDVNVSFDSGSYSAIIGHTGSGKSTLLQHLNALLMPTEGKITVGDREIIAGVKQKKLRDLRKKVGIVFQFPEAQLFEETVEKDICFGPMNFGVSEEDAKLRAKKVIYEVGLTEEILSRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPHGREEIMEMFYNLHKEKGLTTVLVTHSMEDAARYAEKIVLMKAGTVLQIGTPREVFAKPAELVDLGLSVPDVVRFQGLFERKFDVKLTKTCLTIDELTTEMAPYLAKGGA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_APIG01000003_1	1.8\|5701\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5701-5730	30	NZ_APIG01000001.1	731466-731495	0	1.0
NZ_APIG01000003_1	1.12\|5965\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5965-5994	30	NZ_APIG01000011.1	53955-53984	0	1.0

1. spacer 1.8|5701|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to position: 731466-731495, mismatch: 0, identity: 1.0

taccgcgcttcatgaactggggtacgatgc	CRISPR spacer
taccgcgcttcatgaactggggtacgatgc	Protospacer
******************************

2. spacer 1.12|5965|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to position: 53955-53984, mismatch: 0, identity: 1.0

cggttaagtacctgtatagattctcatcaa	CRISPR spacer
cggttaagtacctgtatagattctcatcaa	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_APIG01000003_1	1.6\|5569\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5569-5598	30	MH341452	Listeria phage PSU-VKH-LP040, complete genome	22018-22047	0	1.0
NZ_APIG01000003_1	1.6\|5569\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5569-5598	30	DQ003637	Listeria phage A500, complete genome	23980-24009	0	1.0
NZ_APIG01000003_1	1.6\|5569\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5569-5598	30	KJ094022	Listeria phage LP-030-3, complete genome	30956-30985	0	1.0
NZ_APIG01000003_1	1.6\|5569\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5569-5598	30	KP399678	Listeria phage vB_LmoS_293, complete genome	22519-22548	0	1.0
NZ_APIG01000003_1	1.10\|5833\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5833-5862	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	204429-204458	0	1.0
NZ_APIG01000003_1	1.10\|5833\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5833-5862	30	AJ312240	Bacteriophage PSA complete genome	32354-32383	0	1.0
NZ_APIG01000003_1	1.10\|5833\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5833-5862	30	KJ094023	Listeria phage LP-101, complete genome	38672-38701	0	1.0
NZ_APIG01000003_1	1.15\|6163\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6163-6192	30	KJ094023	Listeria phage LP-101, complete genome	19300-19329	0	1.0
NZ_APIG01000003_1	1.16\|6229\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6229-6258	30	MH341452	Listeria phage PSU-VKH-LP040, complete genome	22961-22990	0	1.0
NZ_APIG01000003_1	1.16\|6229\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6229-6258	30	KJ094022	Listeria phage LP-030-3, complete genome	31899-31928	0	1.0
NZ_APIG01000003_1	1.16\|6229\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6229-6258	30	KP399678	Listeria phage vB_LmoS_293, complete genome	23462-23491	0	1.0
NZ_APIG01000003_1	1.18\|6361\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6361-6390	30	MH341453	Listeria phage PSU-VKH-LP041, complete genome	4756-4785	0	1.0
NZ_APIG01000003_1	1.23\|6691\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6691-6720	30	KP399678	Listeria phage vB_LmoS_293, complete genome	38991-39020	0	1.0
NZ_APIG01000003_1	1.27\|6955\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6955-6984	30	KP399678	Listeria phage vB_LmoS_293, complete genome	1775-1804	0	1.0
NZ_APIG01000003_1	1.13\|6031\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6031-6060	30	KJ094027	Listeria phage LP-083-1 contig 1, partial genome	8889-8918	1	0.967
NZ_APIG01000003_1	1.13\|6031\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6031-6060	30	DQ003641	Listeria phage P35, complete genome	8612-8641	1	0.967
NZ_APIG01000003_1	1.15\|6163\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6163-6192	30	NC_003216	Listeria phage A118, complete genome	20282-20311	1	0.967
NZ_APIG01000003_1	1.15\|6163\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6163-6192	30	AJ242593	Bacteriophage A118 complete genome	20282-20311	1	0.967
NZ_APIG01000003_1	1.15\|6163\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6163-6192	30	X85008	Bacteriophage A118 hol118 and ply118 genes	530-559	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	MN172529	Listeria phage LP-039, complete genome	107224-107253	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	MT438761	Listeria virus P61, complete genome	118427-118456	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	108544-108573	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	MT178766	Listeria virus P100plus, complete genome	73608-73637	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	NC_025440	Listeria phage WIL-1, complete genome	59508-59537	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	NC_047872	Listeria phage LMTA-94, complete genome	26323-26352	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	DQ003638	Listeria phage A511, complete genome	107189-107218	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	MT178767	Listeria virus P200, complete genome	73609-73638	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	DQ004855	Listeria bacteriophage P100, complete genome	73604-73633	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	KJ591604	Listeria phage LMTA-148, complete genome	117422-117451	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	KJ591605	Listeria phage LMTA-57, complete genome	36087-36116	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	KJ094033	Listeria phage LP-048, complete genome	109681-109710	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	KJ668715	Listeria phage LMTA-34, partial genome	12423-12452	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	MN128594	Listeria phage LP-066, complete genome	108130-108159	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	NC_042048	Listeria phage LMTA-34, complete genome	121603-121632	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	28060-28089	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	KJ094030	Listeria phage LP-083-2, complete genome	113296-113325	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	NC_024360	Listeria phage LMSP-25, complete genome	121603-121632	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	106528-106557	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	KJ535721	Listeria phage List-36, complete genome	21275-21304	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	KJ094031	Listeria phage LP-124, complete genome	75411-75440	1	0.967
NZ_APIG01000003_1	1.23\|6691\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6691-6720	30	DQ003637	Listeria phage A500, complete genome	36675-36704	1	0.967
NZ_APIG01000003_1	1.23\|6691\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6691-6720	30	KP399677	Listeria phage vB_LmoS_188, complete genome	36707-36736	1	0.967
NZ_APIG01000003_1	1.23\|6691\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6691-6720	30	KJ094022	Listeria phage LP-030-3, complete genome	6230-6259	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	MN172529	Listeria phage LP-039, complete genome	36996-37025	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	MT438761	Listeria virus P61, complete genome	48737-48766	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	MT178766	Listeria virus P100plus, complete genome	3982-4011	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	NC_025440	Listeria phage WIL-1, complete genome	128854-128883	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	NC_047872	Listeria phage LMTA-94, complete genome	94435-94464	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	DQ003638	Listeria phage A511, complete genome	37493-37522	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	MT178767	Listeria virus P200, complete genome	3982-4011	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	DQ004855	Listeria bacteriophage P100, complete genome	3982-4011	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	KJ591604	Listeria phage LMTA-148, complete genome	44926-44955	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	KJ591605	Listeria phage LMTA-57, complete genome	105204-105233	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	KJ094033	Listeria phage LP-048, complete genome	39453-39482	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	KJ668715	Listeria phage LMTA-34, partial genome	81312-81341	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	NC_042048	Listeria phage LMTA-34, complete genome	52488-52517	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	MK792752	UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome	102697-102726	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	FJ147488	Listeria phage 20422-1 terminase large subunit (terL) gene, partial cds; and unknown gene	1438-1467	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	NC_024360	Listeria phage LMSP-25, complete genome	52488-52517	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	36840-36869	1	0.967
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	KJ535721	Listeria phage List-36, complete genome	91531-91560	1	0.967
NZ_APIG01000003_1	1.27\|6955\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6955-6984	30	MH341452	Listeria phage PSU-VKH-LP040, complete genome	1822-1851	1	0.967
NZ_APIG01000003_1	1.27\|6955\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6955-6984	30	DQ003637	Listeria phage A500, complete genome	1779-1808	1	0.967
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	NC_041862	Listeria phage LP-064, complete genome	116590-116619	2	0.933
NZ_APIG01000003_1	1.17\|6295\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6295-6324	30	JX126918	Listeria phage LP-125, complete genome	116592-116621	2	0.933
NZ_APIG01000003_1	1.18\|6361\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6361-6390	30	NC_009813	Listeria phage B054, complete genome	4756-4785	2	0.933
NZ_APIG01000003_1	1.25\|6823\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6823-6852	30	KJ094028	Listeria phage LP-083-1 contig 2, partial genome	4152-4181	2	0.933
NZ_APIG01000003_1	1.25\|6823\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6823-6852	30	DQ003641	Listeria phage P35, complete genome	20293-20322	2	0.933
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	MT668624	Listeria phage LP-Mix_6.2, complete genome	38343-38372	2	0.933
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	MN128594	Listeria phage LP-066, complete genome	38445-38474	2	0.933
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	NC_041862	Listeria phage LP-064, complete genome	46957-46986	2	0.933
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	KJ094030	Listeria phage LP-083-2, complete genome	43626-43655	2	0.933
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	JX126918	Listeria phage LP-125, complete genome	46956-46985	2	0.933
NZ_APIG01000003_1	1.26\|6889\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6889-6918	30	KJ094031	Listeria phage LP-124, complete genome	5741-5770	2	0.933
NZ_APIG01000003_1	1.37\|7616\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7616-7645	30	JB137888	Sequence 7 from Patent WO2012159774	2400-2429	2	0.933
NZ_APIG01000003_1	1.37\|7616\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7616-7645	30	KJ094021	Listeria phage LP-114, complete genome	36444-36473	2	0.933
NZ_APIG01000003_1	1.2\|5305\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT	5305-5334	30	DQ003637	Listeria phage A500, complete genome	11342-11371	3	0.9
NZ_APIG01000003_1	1.2\|5305\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT	5305-5334	30	KP399678	Listeria phage vB_LmoS_293, complete genome	11363-11392	3	0.9
NZ_APIG01000003_1	1.27\|6955\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6955-6984	30	NC_003216	Listeria phage A118, complete genome	1777-1806	3	0.9
NZ_APIG01000003_1	1.27\|6955\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6955-6984	30	AJ242593	Bacteriophage A118 complete genome	1777-1806	3	0.9
NZ_APIG01000003_1	1.27\|6955\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6955-6984	30	KJ094022	Listeria phage LP-030-3, complete genome	10201-10230	3	0.9
NZ_APIG01000003_1	1.36\|7550\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7550-7579	30	JB137888	Sequence 7 from Patent WO2012159774	1800-1829	3	0.9
NZ_APIG01000003_1	1.37\|7616\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7616-7645	30	NC_021787	Listeria phage LP-037, complete genome	3102-3131	3	0.9
NZ_APIG01000003_1	1.37\|7616\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7616-7645	30	JX442241	Listeria phage P70, complete genome	52353-52382	3	0.9
NZ_APIG01000003_1	1.2\|5305\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT	5305-5334	30	MH341452	Listeria phage PSU-VKH-LP040, complete genome	11377-11406	4	0.867
NZ_APIG01000003_1	1.27\|6955\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6955-6984	30	MK448834	Streptococcus phage Javan91, complete genome	17230-17259	4	0.867
NZ_APIG01000003_1	1.27\|6955\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6955-6984	30	MK449009	Streptococcus phage Javan88, complete genome	18934-18963	4	0.867
NZ_APIG01000003_1	1.8\|5701\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5701-5730	30	MN855637	Bacteriophage sp. isolate 32, complete genome	31104-31133	5	0.833
NZ_APIG01000003_1	1.18\|6361\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6361-6390	30	NC_015603	Lactobacillus kefiranofaciens ZW3 plasmid pWW2, complete sequence	32398-32427	5	0.833
NZ_APIG01000003_1	1.7\|5635\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5635-5664	30	NZ_CP035190	Bacillus licheniformis strain SRCM103914 plasmid unnamed2, complete sequence	3161-3190	6	0.8
NZ_APIG01000003_1	1.9\|5767\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5767-5796	30	AM157364	Bacteriophage P2-EC5 proviral ORF555 and ORF333 DNA for hypothetical proteins	443-472	6	0.8
NZ_APIG01000003_1	1.14\|6097\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6097-6126	30	MN694095	Marine virus AFVG_250M410, complete genome	46513-46542	6	0.8
NZ_APIG01000003_1	1.18\|6361\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6361-6390	30	MN693465	Marine virus AFVG_25M405, complete genome	34057-34086	6	0.8
NZ_APIG01000003_1	1.27\|6955\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6955-6984	30	MK448727	Streptococcus phage Javan291, complete genome	17813-17842	6	0.8
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NC_027341	Lactococcus phage WRP3, complete genome	17007-17036	6	0.8
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	KF926093	Lactococcus phage phiL47, complete genome	18163-18192	6	0.8
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP031267	Staphylococcus warneri strain 16A plasmid unnamed3	9937-9966	6	0.8
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP031267	Staphylococcus warneri strain 16A plasmid unnamed3	20386-20415	6	0.8
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP031267	Staphylococcus warneri strain 16A plasmid unnamed3	88820-88849	6	0.8
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP031267	Staphylococcus warneri strain 16A plasmid unnamed3	99301-99330	6	0.8
NZ_APIG01000003_1	1.35\|7484\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7484-7513	30	NZ_CP014688	Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence	320028-320057	6	0.8
NZ_APIG01000003_1	1.1\|5239\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT	5239-5268	30	MN956514	Salmonella phage L6jm, complete genome	35199-35228	7	0.767
NZ_APIG01000003_1	1.3\|5371\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT	5371-5400	30	MH358458	Escherichia phage phi G17, complete genome	44733-44762	7	0.767
NZ_APIG01000003_1	1.6\|5569\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5569-5598	30	NZ_CP020328	Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP1, complete sequence	13523-13552	7	0.767
NZ_APIG01000003_1	1.6\|5569\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5569-5598	30	NZ_CP019795	Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP1, complete sequence	55447-55476	7	0.767
NZ_APIG01000003_1	1.6\|5569\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5569-5598	30	NZ_CP019660	Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed1, complete sequence	19503-19532	7	0.767
NZ_APIG01000003_1	1.6\|5569\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5569-5598	30	NZ_CP019657	Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed2, complete sequence	19503-19532	7	0.767
NZ_APIG01000003_1	1.8\|5701\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5701-5730	30	MK448921	Streptococcus phage Javan374, complete genome	9999-10028	7	0.767
NZ_APIG01000003_1	1.8\|5701\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5701-5730	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3834600-3834629	7	0.767
NZ_APIG01000003_1	1.13\|6031\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6031-6060	30	NZ_CP021032	Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence	391875-391904	7	0.767
NZ_APIG01000003_1	1.14\|6097\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6097-6126	30	M72412	Bacillus amyloliquefaciens phage H2 5C-DNA methyltransferase gene, complete cds	1412-1441	7	0.767
NZ_APIG01000003_1	1.18\|6361\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6361-6390	30	NC_019773	Anabaena cylindrica PCC 7122 plasmid pANACY.03, complete sequence	115906-115935	7	0.767
NZ_APIG01000003_1	1.18\|6361\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6361-6390	30	NZ_CP054832	Staphylococcus saprophyticus strain UTI-045 plasmid pUTI-045-1, complete sequence	47262-47291	7	0.767
NZ_APIG01000003_1	1.18\|6361\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6361-6390	30	NZ_CP017467	Staphylococcus nepalensis strain JS11 plasmid pSNJS1101, complete sequence	8021-8050	7	0.767
NZ_APIG01000003_1	1.21\|6559\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6559-6588	30	NC_015057	Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence	23801-23830	7	0.767
NZ_APIG01000003_1	1.21\|6559\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6559-6588	30	NZ_CP045274	Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence	111715-111744	7	0.767
NZ_APIG01000003_1	1.21\|6559\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6559-6588	30	NZ_CP032534	Bacillus megaterium NCT-2 plasmid pNCT2_6, complete sequence	54169-54198	7	0.767
NZ_APIG01000003_1	1.22\|6625\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6625-6654	30	MN592897	Vibrio phage MZH0603, complete genome	34687-34716	7	0.767
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	CP003671	Staphylococcus warneri SG1 plasmid clone pvSw2 genomic sequence	6166-6195	7	0.767
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	ACSJ01000014	Clostridium phage D-1873 CLG.Contig159, whole genome shotgun sequence	2930-2959	7	0.767
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NC_007581	Clostridium phage c-st, complete genome	26984-27013	7	0.767
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	AP008983	Clostridium phage c-st genomic DNA, complete genome	26984-27013	7	0.767
NZ_APIG01000003_1	1.34\|7418\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7418-7447	30	NZ_CP019429	Pseudomonas sp. R76 plasmid p76, complete sequence	6120-6149	7	0.767
NZ_APIG01000003_1	1.34\|7418\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7418-7447	30	NZ_CP044458	Acinetobacter indicus strain B18 plasmid pB18-3, complete sequence	63045-63074	7	0.767
NZ_APIG01000003_1	1.34\|7418\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7418-7447	30	NZ_CP039144	Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence	119931-119960	7	0.767
NZ_APIG01000003_1	1.38\|7682\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7682-7711	30	MN692977	Marine virus AFVG_117M37, complete genome	16028-16057	7	0.767
NZ_APIG01000003_1	1.4\|5437\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5437-5466	30	NZ_CP044096	Streptococcus pyogenes strain FDAARGOS_668 plasmid unnamed3	439-468	8	0.733
NZ_APIG01000003_1	1.7\|5635\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5635-5664	30	KT160311	Vibrio phage H188, complete genome	39404-39433	8	0.733
NZ_APIG01000003_1	1.18\|6361\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6361-6390	30	NZ_CP040856	Lactobacillus johnsonii strain G2A plasmid unnamed2, complete sequence	24752-24781	8	0.733
NZ_APIG01000003_1	1.27\|6955\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	6955-6984	30	JX094500	Cronobacter phage CR5, complete genome	159870-159899	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	89650-89679	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP010578	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence	26190-26219	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP010579	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB92, complete sequence	54428-54457	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP020005	Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence	142875-142904	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP015177	Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence	65799-65828	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	503758-503787	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP044979	Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence	422300-422329	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP044980	Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence	51993-52022	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP010111	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-5, complete sequence	223589-223618	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP053953	Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence	294907-294936	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP014853	Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence	16209-16238	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	395528-395557	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	151358-151387	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP045607	Bacillus cereus strain SB1 plasmid p1, complete sequence	455414-455443	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP009636	Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence	171890-171919	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	43796-43825	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	406271-406300	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP053962	Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence	236266-236295	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NZ_CP053950	Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence	189154-189183	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	LC494302	Escherichia phage SP27 DNA, complete genome	6031-6060	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	MK817115	Escherichia phage vB_EcoM_phAPEC6, complete genome	123356-123385	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	NC_027364	Escherichia phage PBECO 4, complete genome	278627-278656	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	MH383160	Escherichia phage UB, complete genome	343694-343723	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	MK327931	Escherichia phage vB_EcoM_G17, complete genome	148842-148871	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	MT325768	Psychrobacillus phage Perkons, complete genome	10133-10162	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	LT603033	Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I	294515-294544	8	0.733
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	KM507819	Escherichia phage 121Q, complete genome	6031-6060	8	0.733
NZ_APIG01000003_1	1.29\|7087\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7087-7116	30	MN693719	Marine virus AFVG_250M1014, complete genome	5373-5402	8	0.733
NZ_APIG01000003_1	1.29\|7087\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7087-7116	30	NZ_CP014361	Methylomonas sp. DH-1 plasmid, complete sequence	82037-82066	8	0.733
NZ_APIG01000003_1	1.32\|7285\|31\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7285-7315	31	KP054477	Lactobacillus phage LfeInf, complete genome	32822-32852	8	0.742
NZ_APIG01000003_1	1.34\|7418\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7418-7447	30	LC425518	Uncultured phage DNA, contig: NODE577	9459-9488	8	0.733
NZ_APIG01000003_1	1.35\|7484\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7484-7513	30	KY794642	Staphylococcus phage vB_Sau_Clo6, complete genome	99049-99078	8	0.733
NZ_APIG01000003_1	1.8\|5701\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5701-5730	30	NC_012858	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence	613635-613664	9	0.7
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	MK770119	Pantoea phage vB_PagS_AAS21, complete genome	71650-71679	9	0.7
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	MG983742	Bacillus phage Anath, complete genome	38218-38247	9	0.7
NZ_APIG01000003_1	1.28\|7021\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	7021-7050	30	MK448884	Streptococcus phage Javan246, complete genome	6318-6347	10	0.667

1. spacer 1.6|5569|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 0, identity: 1.0

catttatgccccgcaagtattctttataaa	CRISPR spacer
catttatgccccgcaagtattctttataaa	Protospacer
******************************

2. spacer 1.6|5569|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 0, identity: 1.0

catttatgccccgcaagtattctttataaa	CRISPR spacer
catttatgccccgcaagtattctttataaa	Protospacer
******************************

3. spacer 1.6|5569|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 0, identity: 1.0

catttatgccccgcaagtattctttataaa	CRISPR spacer
catttatgccccgcaagtattctttataaa	Protospacer
******************************

4. spacer 1.6|5569|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

catttatgccccgcaagtattctttataaa	CRISPR spacer
catttatgccccgcaagtattctttataaa	Protospacer
******************************

5. spacer 1.10|5833|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 0, identity: 1.0

ttgcttcactcgaaaagtatcaattcgatg	CRISPR spacer
ttgcttcactcgaaaagtatcaattcgatg	Protospacer
******************************

6. spacer 1.10|5833|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 0, identity: 1.0

ttgcttcactcgaaaagtatcaattcgatg	CRISPR spacer
ttgcttcactcgaaaagtatcaattcgatg	Protospacer
******************************

7. spacer 1.10|5833|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

ttgcttcactcgaaaagtatcaattcgatg	CRISPR spacer
ttgcttcactcgaaaagtatcaattcgatg	Protospacer
******************************

8. spacer 1.15|6163|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

caatcgaccgttttacctttcgccatgaca	CRISPR spacer
caatcgaccgttttacctttcgccatgaca	Protospacer
******************************

9. spacer 1.16|6229|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 0, identity: 1.0

tacaccctctgcggggttaattgggattac	CRISPR spacer
tacaccctctgcggggttaattgggattac	Protospacer
******************************

10. spacer 1.16|6229|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 0, identity: 1.0

tacaccctctgcggggttaattgggattac	CRISPR spacer
tacaccctctgcggggttaattgggattac	Protospacer
******************************

11. spacer 1.16|6229|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

tacaccctctgcggggttaattgggattac	CRISPR spacer
tacaccctctgcggggttaattgggattac	Protospacer
******************************

12. spacer 1.18|6361|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 0, identity: 1.0

gattcatgaagtaatatttcttgtttatta	CRISPR spacer
gattcatgaagtaatatttcttgtttatta	Protospacer
******************************

13. spacer 1.23|6691|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

aaacgttcgatcgcatcgtgaaaaagaaaa	CRISPR spacer
aaacgttcgatcgcatcgtgaaaaagaaaa	Protospacer
******************************

14. spacer 1.27|6955|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
gaggtcatcaaagaagacgatcatacgtgc	Protospacer
******************************

15. spacer 1.13|6031|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ094027 (Listeria phage LP-083-1 contig 1, partial genome) position: , mismatch: 1, identity: 0.967

ttgctgacgtgaacacagcacctgcaggtt	CRISPR spacer
ttgctgacgtgaacacagcacctgcgggtt	Protospacer
*************************.****

16. spacer 1.13|6031|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to DQ003641 (Listeria phage P35, complete genome) position: , mismatch: 1, identity: 0.967

ttgctgacgtgaacacagcacctgcaggtt	CRISPR spacer
ttgctgacgtgaacacagcacctgcgggtt	Protospacer
*************************.****

17. spacer 1.15|6163|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.967

caatcgaccgttttacctttcgccatgaca	CRISPR spacer
caatcgaccgttttacctttcgccatgacg	Protospacer
*****************************.

18. spacer 1.15|6163|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.967

caatcgaccgttttacctttcgccatgaca	CRISPR spacer
caatcgaccgttttacctttcgccatgacg	Protospacer
*****************************.

19. spacer 1.15|6163|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 1, identity: 0.967

caatcgaccgttttacctttcgccatgaca	CRISPR spacer
caatcgaccgttttacctttcgccatgacg	Protospacer
*****************************.

20. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

21. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

22. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

23. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

24. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

25. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

26. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

27. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

28. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

29. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

30. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

31. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

32. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ668715 (Listeria phage LMTA-34, partial genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

33. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

34. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

35. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

36. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

37. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

38. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

39. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ535721 (Listeria phage List-36, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

40. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 1, identity: 0.967

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactgtaatggatagtg	Protospacer
********************.*********

41. spacer 1.23|6691|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 1, identity: 0.967

aaacgttcgatcgcatcgtgaaaaagaaaa	CRISPR spacer
aaacgtttgatcgcatcgtgaaaaagaaaa	Protospacer
*******.**********************

42. spacer 1.23|6691|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 1, identity: 0.967

aaacgttcgatcgcatcgtgaaaaagaaaa	CRISPR spacer
aaacgtttgatcgcatcgtgaaaaagaaaa	Protospacer
*******.**********************

43. spacer 1.23|6691|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 1, identity: 0.967

aaacgttcgatcgcatcgtgaaaaagaaaa	CRISPR spacer
aaacgtttgatcgcatcgtgaaaaagaaaa	Protospacer
*******.**********************

44. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

45. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MT438761 (Listeria virus P61, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

46. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

47. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_025440 (Listeria phage WIL-1, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

48. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

49. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

50. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

51. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

52. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ591604 (Listeria phage LMTA-148, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

53. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

54. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

55. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ668715 (Listeria phage LMTA-34, partial genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

56. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

57. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MK792752 (UNVERIFIED: Listera phage vB-LmoM-SH3-3, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

58. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to FJ147488 (Listeria phage 20422-1 terminase large subunit (terL) gene, partial cds; and unknown gene) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

59. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

60. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

61. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ535721 (Listeria phage List-36, complete genome) position: , mismatch: 1, identity: 0.967

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatacgtctctcttgatttttataccagta	Protospacer
************************* ****

62. spacer 1.27|6955|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 1, identity: 0.967

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
gaggtcatcaaagaagacgatcatacgtgt	Protospacer
*****************************.

63. spacer 1.27|6955|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 1, identity: 0.967

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
gaggtcatcaaagaagacgatcatacgtgt	Protospacer
*****************************.

64. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 2, identity: 0.933

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactataatggatagtg	Protospacer
*****************.**.*********

65. spacer 1.17|6295|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 2, identity: 0.933

gcacaatacaaatcactgtagtggatagtg	CRISPR spacer
gcacaatacaaatcactataatggatagtg	Protospacer
*****************.**.*********

66. spacer 1.18|6361|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 2, identity: 0.933

gattcatgaagtaatatttcttgtttatta	CRISPR spacer
gattcgtgaagcaatatttcttgtttatta	Protospacer
*****.*****.******************

67. spacer 1.25|6823|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ094028 (Listeria phage LP-083-1 contig 2, partial genome) position: , mismatch: 2, identity: 0.933

ttacttgatgtcaaacatgtaacgcggaag	CRISPR spacer
tttcttgatgtcaaacatgtaacgcggaat	Protospacer
** **************************

68. spacer 1.25|6823|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to DQ003641 (Listeria phage P35, complete genome) position: , mismatch: 2, identity: 0.933

ttacttgatgtcaaacatgtaacgcggaag	CRISPR spacer
tttcttgatgtcaaacatgtaacgcggaat	Protospacer
** **************************

69. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MT668624 (Listeria phage LP-Mix_6.2, complete genome) position: , mismatch: 2, identity: 0.933

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatatgtctctcttgatttttataccagta	Protospacer
****.******************** ****

70. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MN128594 (Listeria phage LP-066, complete genome) position: , mismatch: 2, identity: 0.933

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatatgtctctcttgatttttataccagta	Protospacer
****.******************** ****

71. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_041862 (Listeria phage LP-064, complete genome) position: , mismatch: 2, identity: 0.933

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatatgtctctcttgatttttataccagta	Protospacer
****.******************** ****

72. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ094030 (Listeria phage LP-083-2, complete genome) position: , mismatch: 2, identity: 0.933

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatatgtctctcttgatttttataccagta	Protospacer
****.******************** ****

73. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to JX126918 (Listeria phage LP-125, complete genome) position: , mismatch: 2, identity: 0.933

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatatgtctctcttgatttttataccagta	Protospacer
****.******************** ****

74. spacer 1.26|6889|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ094031 (Listeria phage LP-124, complete genome) position: , mismatch: 2, identity: 0.933

aatacgtctctcttgatttttatacgagta	CRISPR spacer
aatatgtctctcttgatttttataccagta	Protospacer
****.******************** ****

75. spacer 1.37|7616|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 2, identity: 0.933

catccacaacatcccgcaacatgaatttag	CRISPR spacer
cgtccacaacatctcgcaacatgaatttag	Protospacer
*.***********.****************

76. spacer 1.37|7616|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 2, identity: 0.933

catccacaacatcccgcaacatgaatttag	CRISPR spacer
cgtcaacaacatcccgcaacatgaatttag	Protospacer
*.** *************************

77. spacer 1.2|5305|30|NZ_APIG01000003|CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 3, identity: 0.9

actcaatcaaaacaggtataaactctttga	CRISPR spacer
attcaattaaaacaggtataaactctttta	Protospacer
*.*****.******************** *

78. spacer 1.2|5305|30|NZ_APIG01000003|CRISPRCasFinder,CRT matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 3, identity: 0.9

actcaatcaaaacaggtataaactctttga	CRISPR spacer
attcaattaaaacaggtataaactctttta	Protospacer
*.*****.******************** *

79. spacer 1.27|6955|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 3, identity: 0.9

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
gaagtcgtcaaagaagacgatcatacgtgt	Protospacer
**.***.**********************.

80. spacer 1.27|6955|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 3, identity: 0.9

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
gaagtcgtcaaagaagacgatcatacgtgt	Protospacer
**.***.**********************.

81. spacer 1.27|6955|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 3, identity: 0.9

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
gaagtcatcaaagaagatgatcatacgtgt	Protospacer
**.**************.***********.

82. spacer 1.36|7550|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 3, identity: 0.9

aaacagaaatgaaggatggtgaagaagttc	CRISPR spacer
aaacagaaataaaggatggcgaagaagtac	Protospacer
**********.********.******** *

83. spacer 1.37|7616|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 3, identity: 0.9

catccacaacatcccgcaacatgaatttag	CRISPR spacer
cgtcaacaacatcacgcaacatgaatttag	Protospacer
*.** ******** ****************

84. spacer 1.37|7616|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 3, identity: 0.9

catccacaacatcccgcaacatgaatttag	CRISPR spacer
cgtcaacaacatcacgcaacatgaatttag	Protospacer
*.** ******** ****************

85. spacer 1.2|5305|30|NZ_APIG01000003|CRISPRCasFinder,CRT matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 4, identity: 0.867

actcaatcaaaacaggtataaactctttga	CRISPR spacer
attcgattaaaacaggtataaactctttaa	Protospacer
*.**.**.********************.*

86. spacer 1.27|6955|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MK448834 (Streptococcus phage Javan91, complete genome) position: , mismatch: 4, identity: 0.867

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
aatgtcatcaaagaagatgatcatacatgc	Protospacer
.* **************.********.***

87. spacer 1.27|6955|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MK449009 (Streptococcus phage Javan88, complete genome) position: , mismatch: 4, identity: 0.867

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
aatgtcatcaaagaagatgatcatacatgc	Protospacer
.* **************.********.***

88. spacer 1.8|5701|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MN855637 (Bacteriophage sp. isolate 32, complete genome) position: , mismatch: 5, identity: 0.833

taccgcgcttcatgaactggggtacgatgc	CRISPR spacer
caacacgcttgatgaactggggtacgatgt	Protospacer
.* *.***** ******************.

89. spacer 1.18|6361|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_015603 (Lactobacillus kefiranofaciens ZW3 plasmid pWW2, complete sequence) position: , mismatch: 5, identity: 0.833

gattcatga-agtaatatttcttgtttatta	CRISPR spacer
-tttgaagatagtaatatttcttatttatta	Protospacer
  ** * ** *************.*******

90. spacer 1.7|5635|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035190 (Bacillus licheniformis strain SRCM103914 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

tgatggagcaattgaattagagagttttgt	CRISPR spacer
tgatggagcatttgtattagagagaacggt	Protospacer
********** *** *********  . **

91. spacer 1.9|5767|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to AM157364 (Bacteriophage P2-EC5 proviral ORF555 and ORF333 DNA for hypothetical proteins) position: , mismatch: 6, identity: 0.8

atctgttttataatatttaacgtttcccac	CRISPR spacer
ttattttttataatatttaatgcttccccc	Protospacer
 * * ***************.*.***** *

92. spacer 1.14|6097|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MN694095 (Marine virus AFVG_250M410, complete genome) position: , mismatch: 6, identity: 0.8

aatccggaaatccttgcagtctccaacact	CRISPR spacer
catctggaaatccttgcagtctctcgcatt	Protospacer
 ***.******************. .**.*

93. spacer 1.18|6361|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MN693465 (Marine virus AFVG_25M405, complete genome) position: , mismatch: 6, identity: 0.8

gattcatgaagtaatatttcttgt-ttatta	CRISPR spacer
cattcatgaagtaatacatcttgtgttgat-	Protospacer
 ***************. ****** **. *

94. spacer 1.27|6955|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MK448727 (Streptococcus phage Javan291, complete genome) position: , mismatch: 6, identity: 0.8

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
aaagttgtgaaagaagatgatcatacgtgc	Protospacer
.*.**..* ********.************

95. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_027341 (Lactococcus phage WRP3, complete genome) position: , mismatch: 6, identity: 0.8

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
tattttgaattgtttcaagttcttcaattg	Protospacer
*.**** ********* ********* * .

96. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KF926093 (Lactococcus phage phiL47, complete genome) position: , mismatch: 6, identity: 0.8

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
tattttgaattgtttcaagttcttcaattg	Protospacer
*.**** ********* ********* * .

97. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031267 (Staphylococcus warneri strain 16A plasmid unnamed3) position: , mismatch: 6, identity: 0.8

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
ttatttcaattttttctaattcttcaatta	Protospacer
*  ******** ******.******* * *

98. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031267 (Staphylococcus warneri strain 16A plasmid unnamed3) position: , mismatch: 6, identity: 0.8

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
ttatttcaattttttctaattcttcaatta	Protospacer
*  ******** ******.******* * *

99. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031267 (Staphylococcus warneri strain 16A plasmid unnamed3) position: , mismatch: 6, identity: 0.8

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
ttatttcaattttttctaattcttcaatta	Protospacer
*  ******** ******.******* * *

100. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031267 (Staphylococcus warneri strain 16A plasmid unnamed3) position: , mismatch: 6, identity: 0.8

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
ttatttcaattttttctaattcttcaatta	Protospacer
*  ******** ******.******* * *

101. spacer 1.35|7484|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014688 (Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence) position: , mismatch: 6, identity: 0.8

agggcttttattgtggatatagaagtctga	CRISPR spacer
acggctttttttgtggatgtagaagcgtta	Protospacer
* ******* ********.******. * *

102. spacer 1.1|5239|30|NZ_APIG01000003|CRISPRCasFinder,CRT matches to MN956514 (Salmonella phage L6jm, complete genome) position: , mismatch: 7, identity: 0.767

ccctgttagcgatgggggggaagaatatta	CRISPR spacer
tactgttagtgatgagggggaagaagtttt	Protospacer
. *******.****.**********  **

103. spacer 1.3|5371|30|NZ_APIG01000003|CRISPRCasFinder,CRT matches to MH358458 (Escherichia phage phi G17, complete genome) position: , mismatch: 7, identity: 0.767

gcatcgatagattaattccatcgtatttaa	CRISPR spacer
tattcagtacattaaatccatcgtatttaa	Protospacer
   **..** ***** **************

104. spacer 1.6|5569|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020328 (Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP1, complete sequence) position: , mismatch: 7, identity: 0.767

catttatgccccgcaagtattctttataaa	CRISPR spacer
gtattaaggcccgcaagtattctttacata	Protospacer
   *** * *****************.* *

105. spacer 1.6|5569|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019795 (Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP1, complete sequence) position: , mismatch: 7, identity: 0.767

catttatgccccgcaagtattctttataaa	CRISPR spacer
gtattaaggcccgcaagtattctttacata	Protospacer
   *** * *****************.* *

106. spacer 1.6|5569|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019660 (Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

catttatgccccgcaagtattctttataaa	CRISPR spacer
gtattaaggcccgcaagtattctttacata	Protospacer
   *** * *****************.* *

107. spacer 1.6|5569|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019657 (Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

catttatgccccgcaagtattctttataaa	CRISPR spacer
gtattaaggcccgcaagtattctttacata	Protospacer
   *** * *****************.* *

108. spacer 1.8|5701|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MK448921 (Streptococcus phage Javan374, complete genome) position: , mismatch: 7, identity: 0.767

taccgcgcttcatgaactggggtacgatgc	CRISPR spacer
cggagcgcttgatgaactggggtatgatgt	Protospacer
..  ****** *************.****.

109. spacer 1.8|5701|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.767

taccgcgcttcatgaactggggtacgatgc	CRISPR spacer
acacgaacttcatgacctggggtgcgatgc	Protospacer
   ** .******** *******.******

110. spacer 1.13|6031|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 7, identity: 0.767

ttgctgacgtgaacacagcacctgcaggtt	CRISPR spacer
cggctggcatgaacacagcacctgcctatt	Protospacer
. ****.*.****************  .**

111. spacer 1.14|6097|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to M72412 (Bacillus amyloliquefaciens phage H2 5C-DNA methyltransferase gene, complete cds) position: , mismatch: 7, identity: 0.767

aatccggaaatccttgcagtctccaacact	CRISPR spacer
cttcatcaaatgcttgcagtctccaacatt	Protospacer
  **   **** ****************.*

112. spacer 1.18|6361|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_019773 (Anabaena cylindrica PCC 7122 plasmid pANACY.03, complete sequence) position: , mismatch: 7, identity: 0.767

gattcatgaagtaatatttcttgtttatta	CRISPR spacer
gcctcatgtagtaatttttcttgtttttct	Protospacer
* .***** ****** ********** *.

113. spacer 1.18|6361|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054832 (Staphylococcus saprophyticus strain UTI-045 plasmid pUTI-045-1, complete sequence) position: , mismatch: 7, identity: 0.767

gattcatgaagtaatatttcttgtttatta	CRISPR spacer
aattcttgaagtaatatttctttataatcc	Protospacer
.**** ****************  * **.

114. spacer 1.18|6361|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017467 (Staphylococcus nepalensis strain JS11 plasmid pSNJS1101, complete sequence) position: , mismatch: 7, identity: 0.767

gattcatgaagtaatatttcttgtttatta	CRISPR spacer
aattcttgaagtaatatttctttataatcc	Protospacer
.**** ****************  * **.

115. spacer 1.21|6559|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_015057 (Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence) position: , mismatch: 7, identity: 0.767

gagcaagaaatacagtcatctattgaccaa	CRISPR spacer
gagcaagcaatacagtcatcgatcaaaccc	Protospacer
******* ************ **..* *

116. spacer 1.21|6559|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045274 (Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence) position: , mismatch: 7, identity: 0.767

gagcaagaaatacagtcatctattgaccaa	CRISPR spacer
ttacaagaaatactgtcacctattgaaaaa	Protospacer
  .********** ****.*******  **

117. spacer 1.21|6559|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032534 (Bacillus megaterium NCT-2 plasmid pNCT2_6, complete sequence) position: , mismatch: 7, identity: 0.767

gagcaagaaatacagtcatctattgaccaa	CRISPR spacer
ttacaagaaatactgtcacctattgaaaaa	Protospacer
  .********** ****.*******  **

118. spacer 1.22|6625|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MN592897 (Vibrio phage MZH0603, complete genome) position: , mismatch: 7, identity: 0.767

gtaaaagatgtgtacgctaaatattgcact	CRISPR spacer
gccgaagatgtgtacgctacagattgcccg	Protospacer
*. .*************** * ***** *

119. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to CP003671 (Staphylococcus warneri SG1 plasmid clone pvSw2 genomic sequence) position: , mismatch: 7, identity: 0.767

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
caatttcaattttttctaattcttcaatta	Protospacer
.. ******** ******.******* * *

120. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to ACSJ01000014 (Clostridium phage D-1873 CLG.Contig159, whole genome shotgun sequence) position: , mismatch: 7, identity: 0.767

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
gtttttcaattttttctaattcttctatca	Protospacer
  ********* ******.******  * *

121. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 7, identity: 0.767

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
gtttttcaattttttctaattcttctatca	Protospacer
  ********* ******.******  * *

122. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 7, identity: 0.767

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
gtttttcaattttttctaattcttctatca	Protospacer
  ********* ******.******  * *

123. spacer 1.34|7418|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019429 (Pseudomonas sp. R76 plasmid p76, complete sequence) position: , mismatch: 7, identity: 0.767

tttctgattgggtttgatgaattgactcgc	CRISPR spacer
ccgctgtttgagtttgatgaattgactcat	Protospacer
.. *** ***.*****************..

124. spacer 1.34|7418|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044458 (Acinetobacter indicus strain B18 plasmid pB18-3, complete sequence) position: , mismatch: 7, identity: 0.767

tttctgattgggtttgatgaattgactcgc	CRISPR spacer
tatcagatagggtttgatgaattgaagaac	Protospacer
* ** *** ****************   .*

125. spacer 1.34|7418|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039144 (Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence) position: , mismatch: 7, identity: 0.767

tttctgattgggtttgatgaattgactcgc	CRISPR spacer
tatcagatagggtttgatgaattgaagaac	Protospacer
* ** *** ****************   .*

126. spacer 1.38|7682|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MN692977 (Marine virus AFVG_117M37, complete genome) position: , mismatch: 7, identity: 0.767

gcatagttttaagttcttggtctgacgtgg	CRISPR spacer
ccatagttttaagttctgggtctttggttt	Protospacer
 **************** *****   **

127. spacer 1.4|5437|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044096 (Streptococcus pyogenes strain FDAARGOS_668 plasmid unnamed3) position: , mismatch: 8, identity: 0.733

acttgtcattggagaaatactttcatcagt	CRISPR spacer
acttgtgataggagaaatacttttgacgaa	Protospacer
****** ** *************.. *..

128. spacer 1.7|5635|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KT160311 (Vibrio phage H188, complete genome) position: , mismatch: 8, identity: 0.733

tgatggagcaattgaattagagagttttgt	CRISPR spacer
agatagagcaattgaattagagaagggtag	Protospacer
 ***.******************.   *.

129. spacer 1.18|6361|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040856 (Lactobacillus johnsonii strain G2A plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

gattcatgaagtaatatttcttgtttatta	CRISPR spacer
tgatcatgaagtaatttttcttgttcttct	Protospacer
 . ************ *********. *.

130. spacer 1.27|6955|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to JX094500 (Cronobacter phage CR5, complete genome) position: , mismatch: 8, identity: 0.733

gaggtcatcaaagaagacgatcatacgtgc	CRISPR spacer
cagctcatcaaagaagacggtcatgatacc	Protospacer
 ** ***************.****.    *

131. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

132. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010578 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

133. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010579 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB92, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

134. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020005 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

135. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015177 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

136. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

137. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044979 (Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

138. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044980 (Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

139. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010111 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-5, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

140. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053953 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

141. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014853 (Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

142. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

143. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

144. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045607 (Bacillus cereus strain SB1 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

145. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009636 (Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

146. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

147. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

148. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053962 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

149. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053950 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
attgttcaagtgcttctagttcttcatctt	Protospacer
  * ***** **.**************.

150. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to LC494302 (Escherichia phage SP27 DNA, complete genome) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
atttttcaattgctgctagttcttcttcgt	Protospacer
  **********.* ********** *..

151. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MK817115 (Escherichia phage vB_EcoM_phAPEC6, complete genome) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
atttttcaattgctgctagttcttcttcgt	Protospacer
  **********.* ********** *..

152. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_027364 (Escherichia phage PBECO 4, complete genome) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
atttttcaattgctgctagttcttcttcgt	Protospacer
  **********.* ********** *..

153. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MH383160 (Escherichia phage UB, complete genome) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
atttttcaattgctgctagttcttcttcgt	Protospacer
  **********.* ********** *..

154. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MK327931 (Escherichia phage vB_EcoM_G17, complete genome) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
atttttcaattgctgctagttcttcttcgt	Protospacer
  **********.* ********** *..

155. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MT325768 (Psychrobacillus phage Perkons, complete genome) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
ataatataattgtttcaagttgttcattaa	Protospacer
    * .********* **** ********

156. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to LT603033 (Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
atttttcaattgctgctagttcttcttcgt	Protospacer
  **********.* ********** *..

157. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KM507819 (Escherichia phage 121Q, complete genome) position: , mismatch: 8, identity: 0.733

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
atttttcaattgctgctagttcttcttcgt	Protospacer
  **********.* ********** *..

158. spacer 1.29|7087|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MN693719 (Marine virus AFVG_250M1014, complete genome) position: , mismatch: 8, identity: 0.733

agtttaaagatgcggaagaattcgaccaaa	CRISPR spacer
agtttaaagatgcggaagaatctggaacgt	Protospacer
*********************..*.   .

159. spacer 1.29|7087|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014361 (Methylomonas sp. DH-1 plasmid, complete sequence) position: , mismatch: 8, identity: 0.733

agtttaaagatgcggaagaattcgaccaaa	CRISPR spacer
gattaaaagatgcggaaaaattcgatttga	Protospacer
..** ************.*******.. .*

160. spacer 1.32|7285|31|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KP054477 (Lactobacillus phage LfeInf, complete genome) position: , mismatch: 8, identity: 0.742

catatctaaaatttgaccttgacaacgtgag	CRISPR spacer
gttatctaaagtttaaccttgacaacacggt	Protospacer
  ********.***.***********..*.

161. spacer 1.34|7418|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to LC425518 (Uncultured phage DNA, contig: NODE577) position: , mismatch: 8, identity: 0.733

tttctgattgggtttgatgaattgactcgc	CRISPR spacer
gcgaggataggttttgatgaattgactcac	Protospacer
 .   *** ** ****************.*

162. spacer 1.35|7484|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to KY794642 (Staphylococcus phage vB_Sau_Clo6, complete genome) position: , mismatch: 8, identity: 0.733

agggcttttattgtggatatagaagtctga	CRISPR spacer
attccttttattgtggatacagaagacctg	Protospacer
*   ***************.***** *. .

163. spacer 1.8|5701|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NC_012858 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence) position: , mismatch: 9, identity: 0.7

taccgcgcttcatgaactggggtacgatgc	CRISPR spacer
cctactacttcagtaactggggtacgatgc	Protospacer
. .  ..*****  ****************

164. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MK770119 (Pantoea phage vB_PagS_AAS21, complete genome) position: , mismatch: 9, identity: 0.7

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
aacccgcaattgtttctaggtcttcaatat	Protospacer
 .... ************* ****** **

165. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MG983742 (Bacillus phage Anath, complete genome) position: , mismatch: 9, identity: 0.7

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
ccttttcaattatttcttgttcttccagcc	Protospacer
. *********.***** *******

166. spacer 1.28|7021|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to MK448884 (Streptococcus phage Javan246, complete genome) position: , mismatch: 10, identity: 0.667

tgttttcaattgtttctagttcttcattaa	CRISPR spacer
gagagataattgtttctagttcttcgtttt	Protospacer
 .    .******************.**

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_APIG01000002

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

20731 : 77582

Bacillus_virus(15.0%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003727526.1\|20731_21871_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003727525.1\|21950_22346_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|22496_22712_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003727523.1\|22835_23369_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003727522.1\|23384_24050_+	hypothetical protein	NA	NA	NA	NA
WP_003727521.1\|24311_25250_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|25364_26648_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|26832_28092_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_003726393.1\|28210_28777_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_003726394.1\|28811_29381_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003727520.1\|29482_30025_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003726396.1\|30034_30898_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003727519.1\|30894_31680_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	6.7e-26	37.6
WP_003727518.1\|31813_32674_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	3.1e-40	47.2
WP_003727517.1\|32946_35025_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	5.4e-107	37.5
WP_003727516.1\|35087_36392_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_003731303.1\|36674_37577_+	tyrosine recombinase XerC	A0A1B1IQT7	uncultured_Mediterranean_phage	1.6e-23	28.0
WP_003724001.1\|37597_38137_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_003727514.1\|38150_39560_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IBU3	Erwinia_phage	4.0e-29	26.0
WP_003726695.1\|39580_40360_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_003727513.1\|40462_40882_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003724130.1\|40904_41216_+	hypothetical protein	NA	NA	NA	NA
WP_003726697.1\|41218_42091_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003726698.1\|42132_42729_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003727511.1\|42886_43294_+	CoA-binding protein	NA	NA	NA	NA
WP_003727510.1\|43474_45442_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	5.1e-123	42.5
WP_003727509.1\|45438_47898_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	1.1e-101	31.8
WP_003726814.1\|47980_48448_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_009917681.1\|49075_50896_+	class 1 internalin InlK	NA	NA	NA	NA
WP_003727507.1\|50928_52815_-	peptidoglycan O-acetyltransferase OatA	B5WZU0	Pseudomonas_phage	3.8e-43	32.2
WP_003726657.1\|53027_53726_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	6.4e-12	31.9
WP_003723738.1\|53958_55635_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_003727506.1\|55761_56679_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003719566.1\|56800_57034_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_012681271.1\|57144_58368_+	GTPase HflX	NA	NA	NA	NA
WP_003727505.1\|58360_59587_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_003719570.1\|59788_60157_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003723435.1\|60227_61562_+	type I glutamate--ammonia ligase	M1NM71	Moumouvirus	4.2e-12	23.8
WP_003727504.1\|61705_63001_+	arsenic transporter	A0A2H4PQU3	Staphylococcus_phage	3.9e-148	62.8
WP_003727503.1\|63034_63559_-	GNAT family N-acetyltransferase	G9BWD5	Planktothrix_phage	1.4e-06	30.5
WP_003723438.1\|63589_64204_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	9.3e-15	62.1
WP_003727502.1\|64359_64689_+	cell division suppressor protein YneA	NA	NA	NA	NA
WP_003726567.1\|64782_65010_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_003734516.1\|65156_67151_+	transketolase	NA	NA	NA	NA
WP_003726667.1\|67371_67611_+	YneF family protein	NA	NA	NA	NA
WP_003726668.1\|67659_68391_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	2.3e-81	58.0
WP_003726669.1\|68412_68919_-	ParB-like nuclease domain-containing protein	A0A220GKT8	Streptococcus_phage	1.4e-56	66.7
WP_003731336.1\|68928_70233_-	DUF3440 domain-containing protein	A0A220GKF8	Streptococcus_phage	1.2e-133	52.1
WP_012681273.1\|70222_71428_-	helicase SNF2	L0P6E9	Lactobacillus_phage	7.0e-91	46.6
WP_003727498.1\|71405_71780_-	hypothetical protein	NA	NA	NA	NA
WP_003723449.1\|72072_72801_+	UMP kinase	NA	NA	NA	NA
WP_003723450.1\|72800_73358_+	ribosome recycling factor	NA	NA	NA	NA
WP_003727497.1\|73588_74347_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	4.4e-22	42.1
WP_003727496.1\|74360_75149_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_003726414.1\|75163_76306_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_003726415.1\|76319_77582_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_APIG01000008

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

22762 : 30604

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003725407.1\|22762_23734_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003731212.1\|23741_24710_-	YvcK family protein	A1IMD5	Streptococcus_phage	1.8e-68	43.6
WP_003722606.1\|24711_25587_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_003725409.1\|25694_27425_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	9.5e-174	53.1
WP_009918600.1\|27466_28528_-	galactose mutarotase	NA	NA	NA	NA
WP_009918601.1\|28544_29528_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.1e-52	38.7
WP_003722610.1\|29644_30604_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

8. NZ_APIG01000011

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

40648 : 78181

Listeria_phage(96.43%)

terminase,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003739618.1\|40648_40996_+	helix-turn-helix transcriptional regulator	A0A0U4JD08	Gordonia_phage	2.0e-06	42.6
WP_039382661.1\|41050_41527_-	competence protein ComK	NA	NA	NA	NA
WP_025370649.1\|41517_42876_-	recombinase family protein	Q8LTD8	Listeria_phage	1.3e-237	90.0
WP_003749252.1\|42942_43365_-	hypothetical protein	NA	NA	NA	NA
WP_003733641.1\|43377_43983_-	hypothetical protein	NA	NA	NA	NA
WP_003733640.1\|44005_44728_-	hypothetical protein	A0A059T7P9	Listeria_phage	2.8e-103	97.9
WP_025370648.1\|44743_44962_-	zinc-ribbon domain-containing protein	A0A059T6E3	Listeria_phage	1.3e-32	97.2
WP_003770011.1\|44984_45476_-	hypothetical protein	A8ATX4	Listeria_phage	3.9e-88	95.7
WP_031645987.1\|45508_45811_-	helix-turn-helix transcriptional regulator	A0A059T669	Listeria_phage	2.1e-20	52.0
WP_031645988.1\|45967_46198_+	helix-turn-helix transcriptional regulator	A8ATK0	Listeria_phage	2.4e-08	51.7
WP_003770002.1\|46201_46387_+	hypothetical protein	NA	NA	NA	NA
WP_052197039.1\|46346_46658_-	hypothetical protein	NA	NA	NA	NA
WP_003735007.1\|46674_46869_+	hypothetical protein	A0A059T6E5	Listeria_phage	1.3e-26	100.0
WP_003769996.1\|46880_47165_+	hypothetical protein	A0A0B5D168	Listeria_phage	1.6e-46	98.9
WP_003733634.1\|47204_47441_+	hypothetical protein	A0A059T5E9	Listeria_phage	3.3e-37	100.0
WP_039381688.1\|47437_47719_+	hypothetical protein	Q9T180	Listeria_phage	2.2e-40	98.9
WP_003727748.1\|47750_47912_+	hypothetical protein	A0A059T7X7	Listeria_phage	1.2e-19	98.1
WP_025370647.1\|47904_48147_-	hypothetical protein	A0A059T7Q3	Listeria_phage	1.5e-37	98.8
WP_003769993.1\|48210_48990_+	phage antirepressor Ant	A0A059T6E7	Listeria_phage	2.0e-139	96.9
WP_039382665.1\|49114_49648_+	hypothetical protein	Q9T177	Listeria_phage	2.0e-82	89.3
WP_003769990.1\|49644_49860_+	hypothetical protein	Q9T176	Listeria_phage	6.1e-22	73.2
WP_003769989.1\|49967_50156_+	hypothetical protein	A8ATY3	Listeria_phage	2.5e-27	95.2
WP_009930470.1\|50457_50652_+	hypothetical protein	A0A059T6E8	Listeria_phage	1.8e-28	95.3
WP_009930471.1\|50648_51125_+	siphovirus Gp157 family protein	A8ASN2	Listeria_phage	2.0e-57	94.9
WP_009930473.1\|51129_51768_+	ERF family protein	A8ASN3	Listeria_phage	3.0e-77	74.3
WP_039382668.1\|51781_52696_+	DnaD domain-containing protein	A0A0B5D175	Listeria_phage	5.8e-138	89.8
WP_003723963.1\|52699_52897_+	hypothetical protein	NA	NA	NA	NA
WP_003727760.1\|53203_54184_+	DNA (cytosine-5-)-methyltransferase	D2IZY5	Enterococcus_phage	9.1e-97	55.6
WP_003727761.1\|54180_54714_+	DUF1642 domain-containing protein	A0A059T7S4	Listeria_phage	8.2e-60	66.9
WP_003727762.1\|54710_55109_+	hypothetical protein	R4ICD6	Listeria_phage	7.8e-39	100.0
WP_003727763.1\|55112_55286_+	hypothetical protein	A0A059T7N2	Listeria_phage	1.2e-25	94.7
WP_003735014.1\|55282_55468_+	hypothetical protein	A0A059T5G1	Listeria_phage	1.2e-26	98.4
WP_003735013.1\|55464_55755_+	hypothetical protein	Q8W5X0	Listeria_phage	5.0e-43	90.6
WP_003743374.1\|55754_55940_+	hypothetical protein	NA	NA	NA	NA
WP_003743375.1\|55940_56168_+	DUF3850 domain-containing protein	A0A059T7N3	Listeria_phage	1.9e-34	96.0
WP_034172803.1\|56178_56580_+	hypothetical protein	A8ATZ6	Listeria_phage	1.7e-54	82.7
WP_039382678.1\|56579_57062_+	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	3.9e-77	92.5
WP_039382681.1\|57093_57399_+	hypothetical protein	A8ATZ8	Listeria_phage	1.9e-37	83.2
WP_003759675.1\|57395_57536_+	BH0509 family protein	A8ATZ9	Listeria_phage	4.7e-15	87.0
WP_031644573.1\|57501_57906_+	endodeoxyribonuclease	A8AU00	Listeria_phage	2.7e-71	98.5
WP_031644575.1\|58034_58199_+	hypothetical protein	A8ASQ0	Listeria_phage	7.4e-20	94.4
WP_003735131.1\|58217_58652_+	hypothetical protein	A8ASQ1	Listeria_phage	4.3e-75	99.3
WP_003731712.1\|58936_59164_+	hypothetical protein	A0A0B5CTV3	Listeria_phage	2.5e-34	100.0
WP_031644723.1\|59203_59944_+	hypothetical protein	A0A0B5CTX0	Listeria_phage	6.3e-135	100.0
WP_052198277.1\|59909_61256_+\|terminase	PBSX family phage terminase large subunit	A8ATU6	Listeria_phage	8.0e-261	98.4
WP_039382688.1\|61270_62827_+	hypothetical protein	A8ATU7	Listeria_phage	2.4e-301	99.2
WP_039382691.1\|62831_63872_+	hypothetical protein	A8ATU8	Listeria_phage	2.2e-197	98.3
WP_003744996.1\|63967_64522_+	hypothetical protein	A8ATU9	Listeria_phage	1.1e-88	99.5
WP_003725068.1\|64544_65417_+	hypothetical protein	A0A0B5CTX8	Listeria_phage	4.5e-164	99.7
WP_003725067.1\|65430_65586_+	hypothetical protein	A0A0B5CYK6	Listeria_phage	1.0e-18	98.0
WP_039382694.1\|65586_65940_+	hypothetical protein	A8ATV2	Listeria_phage	1.4e-60	99.1
WP_003733695.1\|65939_66305_+	hypothetical protein	A8ATV3	Listeria_phage	9.9e-65	99.2
WP_039382698.1\|66294_66612_+	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	3.2e-51	98.1
WP_003725064.1\|66608_66980_+	hypothetical protein	A8ATV5	Listeria_phage	8.5e-64	100.0
WP_039382701.1\|66984_67671_+	Ig domain-containing protein	A8ATV6	Listeria_phage	1.6e-116	99.6
WP_039382704.1\|67726_68158_+	hypothetical protein	A0A0B5D0B8	Listeria_phage	7.1e-70	95.8
WP_077916921.1\|68154_68466_+	hypothetical protein	A0A0B5D116	Listeria_phage	2.6e-42	97.8
WP_039382710.1\|68470_73270_+\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	89.3
WP_039382713.1\|73266_74835_+\|tail	phage tail family protein	A8ATW0	Listeria_phage	6.8e-304	99.2
WP_039382716.1\|74847_77013_+\|tail	phage tail protein	A8ATW1	Listeria_phage	0.0e+00	96.5
WP_003727799.1\|77050_77416_+	hypothetical protein	A8ASL3	Listeria_phage	1.7e-11	97.9
WP_023559373.1\|77428_77710_+\|holin	holin	A8ASL4	Listeria_phage	1.0e-40	93.5
WP_039382719.1\|77709_78181_+	M15 family metallopeptidase	A8ATW4	Listeria_phage	1.8e-82	98.1

Anti-CRISPR protein detection

Acr_ID: NZ_APIG01000011.1|WP_003770002.1|46201_46387_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_APIG01000011.1|WP_052197039.1|46346_46658_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_APIG01000011.1|WP_003770002.1|46201_46387_+|hypothetical-protein

46201_46387_+

61 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.5	1.0

40648-78181

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_APIG01000003_1	TypeII	1.12\|5965\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5965-5994	30	53984-53955	0

1. spacer 1.12|5965|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_APIG01000011 position: 53984-53955, mismatch: 0

cggttaagtacctgtatagattctcatcaa	CRISPR spacer
cggttaagtacctgtatagattctcatcaa	Protospacer
******************************

NZ_APIG01000011.1|WP_052197039.1|46346_46658_-|hypothetical-protein

46346_46658_-

103 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.5	1.0

40648-78181

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_APIG01000003_1	TypeII	1.12\|5965\|30\|NZ_APIG01000003\|CRISPRCasFinder,CRT,PILER-CR	5965-5994	30	53984-53955	0

1. spacer 1.12|5965|30|NZ_APIG01000003|CRISPRCasFinder,CRT,PILER-CR matches to NZ_APIG01000011 position: 53984-53955, mismatch: 0

cggttaagtacctgtatagattctcatcaa	CRISPR spacer
cggttaagtacctgtatagattctcatcaa	Protospacer
******************************

9. NZ_APIG01000001

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

605195 : 612617

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003727003.1\|605195_605579_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	8.1e-17	40.7
WP_003727002.1\|605600_606584_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	2.0e-11	33.8
WP_003727001.1\|606598_607612_+	glycosyltransferase	A0A1V0SAH6	Catovirus	1.8e-10	31.2
WP_003721509.1\|607820_609311_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_003727000.1\|609322_610147_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	9.7e-68	52.6
WP_003724634.1\|610159_610468_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_009917597.1\|610527_610932_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_077625364.1\|611060_612617_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.3e-17	28.1

DBSCAN-SWA_2

699363 : 764288

Listeria_phage(84.62%)

tRNA,holin,terminase,capsid,protease,tail,integrase,portal

attL 721184:721198|attR 726954:726968

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721619.1\|699363_700416_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	2.1e-27	36.0
WP_009917937.1\|700415_702824_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003721621.1\|702984_703686_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-33	35.8
WP_009917936.1\|703699_707110_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_003724750.1\|707207_707660_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003724751.1\|707675_710876_+	MMPL family transporter	NA	NA	NA	NA
WP_003724752.1\|710979_711654_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	3.4e-50	47.7
WP_012681263.1\|711691_712618_-	ribonuclease HIII	NA	NA	NA	NA
WP_003740576.1\|712771_713035_+	cell division protein ZapA	NA	NA	NA	NA
WP_003726937.1\|713034_713577_+	CvpA family protein	NA	NA	NA	NA
WP_003726936.1\|713668_715381_+	DNA polymerase/3'-5' exonuclease PolX	A0A2H4UV14	Bodo_saltans_virus	1.9e-17	24.5
WP_003726935.1\|715403_717761_+	endonuclease MutS2	Q94M10	Lactobacillus_phage	1.0e-21	50.4
WP_003723853.1\|717841_718153_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	5.4e-19	39.6
WP_003726544.1\|718228_720040_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_003726934.1\|720220_721435_+	aspartate kinase	NA	NA	NA	NA
721184:721198	attL	NA	NA	NA	NA
WP_012681265.1\|721490_721985_-	YslB family protein	NA	NA	NA	NA
WP_003723856.1\|722132_722933_+	glutamate racemase	NA	NA	NA	NA
WP_003726032.1\|722945_723692_+	ribonuclease PH	NA	NA	NA	NA
WP_003726033.1\|723695_724307_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_003726034.1\|724343_724868_+	metallophosphoesterase	NA	NA	NA	NA
WP_039382161.1\|725153_726308_-\|integrase	site-specific integrase	A8ATC7	Listeria_phage	8.8e-208	95.1
WP_003730990.1\|726440_727055_-	hypothetical protein	A0A059T7Z1	Listeria_phage	7.7e-78	77.0
726954:726968	attR	NA	NA	NA	NA
WP_039382164.1\|727105_727558_-	ImmA/IrrE family metallo-endopeptidase	R4IBK9	Listeria_phage	9.7e-78	90.0
WP_039382166.1\|727574_727898_-	helix-turn-helix transcriptional regulator	A0A059T6G1	Listeria_phage	3.0e-33	68.2
WP_003730994.1\|728297_728501_-	hypothetical protein	NA	NA	NA	NA
WP_003730995.1\|728567_728759_+	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	5.4e-22	87.1
WP_003730996.1\|728780_729023_+	hypothetical protein	A8ATD2	Listeria_phage	3.9e-41	93.8
WP_039382168.1\|729025_729211_+	hypothetical protein	A8ATD3	Listeria_phage	6.4e-28	98.4
WP_187703628.1\|729445_729598_+	hypothetical protein	A8ATD4	Listeria_phage	3.0e-15	82.0
WP_012951522.1\|729948_730191_+	hypothetical protein	NA	NA	NA	NA
WP_187703629.1\|730574_730763_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_039382174.1\|731067_732348_+	DNA (cytosine-5-)-methyltransferase	A0A1X9I6Y5	Streptococcus_phage	1.6e-117	53.9
WP_039382176.1\|732344_732947_+	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	1.3e-53	53.2
WP_039382179.1\|733087_733363_+	hypothetical protein	A0A059T7Z9	Listeria_phage	8.0e-43	92.3
WP_025370572.1\|733466_733664_+	hypothetical protein	A8ASP4	Listeria_phage	2.6e-11	52.4
WP_039382183.1\|733667_734069_+	hypothetical protein	A8ATZ6	Listeria_phage	3.3e-61	91.7
WP_039382186.1\|734103_734370_+	hypothetical protein	Q8W5W6	Listeria_phage	3.1e-15	48.2
WP_009933642.1\|734366_734540_+	hypothetical protein	A0A059T5G3	Listeria_phage	5.2e-24	100.0
WP_031645564.1\|734536_734920_+	hypothetical protein	A0A059T6A2	Listeria_phage	5.9e-60	90.6
WP_014929535.1\|734921_735401_+	siphovirus Gp157 family protein	A0A059T803	Listeria_phage	5.4e-79	100.0
WP_003743935.1\|735413_736103_+	AAA family ATPase	A0A059T7T3	Listeria_phage	2.6e-130	100.0
WP_077917047.1\|736181_737423_+	DEAD/DEAH box helicase	A8ATF1	Listeria_phage	2.5e-208	93.4
WP_031645567.1\|737447_737933_+	DUF669 domain-containing protein	A0A059T5G4	Listeria_phage	2.5e-87	98.8
WP_039382193.1\|737955_740229_+	DNA primase	R4IBW2	Listeria_phage	0.0e+00	94.3
WP_031672547.1\|740521_740839_+	VRR-NUC domain-containing protein	A8ATF4	Listeria_phage	1.9e-51	97.1
WP_003731659.1\|740840_741053_+	hypothetical protein	NA	NA	NA	NA
WP_031644593.1\|741501_742041_+	DUF3310 domain-containing protein	A8ATF5	Listeria_phage	2.7e-74	77.1
WP_003731657.1\|742037_742307_+	hypothetical protein	NA	NA	NA	NA
WP_176746501.1\|742335_742491_+	hypothetical protein	NA	NA	NA	NA
WP_003731655.1\|742550_742778_+	hypothetical protein	NA	NA	NA	NA
WP_039382196.1\|742790_743216_+	DUF722 domain-containing protein	A0A059T6H4	Listeria_phage	1.4e-73	99.3
WP_039380401.1\|743313_744057_+	DUF559 domain-containing protein	NA	NA	NA	NA
WP_026749920.1\|744544_744871_+	hypothetical protein	A0A059T5G5	Listeria_phage	8.3e-55	98.1
WP_009928009.1\|744870_745185_+	HNH endonuclease	A8ATF8	Listeria_phage	3.8e-57	99.0
WP_031668694.1\|745234_745591_+\|terminase	P27 family phage terminase small subunit	A0A059T7Y1	Listeria_phage	1.0e-45	96.0
WP_039382202.1\|745587_747231_+\|terminase	terminase large subunit	A0A059T7Q8	Listeria_phage	0.0e+00	98.5
WP_014601415.1\|747242_748373_+\|portal	phage portal protein	A8AT96	Listeria_phage	2.6e-204	93.1
WP_012581459.1\|748369_749086_+\|protease	Clp protease ClpP	A0A1S5SFF8	Streptococcus_phage	1.0e-65	57.0
WP_039382205.1\|749112_750264_+\|capsid	phage major capsid protein	A8AT98	Listeria_phage	2.8e-214	99.2
WP_015987290.1\|750270_750441_+	hypothetical protein	A8AT99	Listeria_phage	6.3e-22	100.0
WP_003731645.1\|750450_750750_+	hypothetical protein	A8ATA0	Listeria_phage	5.3e-48	100.0
WP_003731644.1\|750733_751099_+	hypothetical protein	A8ATA1	Listeria_phage	1.3e-64	100.0
WP_003731643.1\|751095_751497_+	hypothetical protein	A8ATA2	Listeria_phage	2.1e-68	100.0
WP_039382208.1\|751493_751877_+	hypothetical protein	A8ATA3	Listeria_phage	1.5e-63	94.5
WP_012581455.1\|751897_752485_+\|tail	phage tail protein	A8ATA4	Listeria_phage	4.0e-108	100.0
WP_023548918.1\|752555_752888_+	hypothetical protein	A8ATA5	Listeria_phage	4.3e-51	97.3
WP_003731639.1\|752938_753088_+	hypothetical protein	A0A059T6F4	Listeria_phage	6.7e-20	98.0
WP_039382210.1\|753102_758022_+\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	91.6
WP_039382213.1\|758014_759664_+\|tail	phage tail family protein	A0A059T682	Listeria_phage	0.0e+00	99.5
WP_039382216.1\|759676_761971_+\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	0.0e+00	97.1
WP_039382219.1\|761960_763061_+	hypothetical protein	A0A059T7R4	Listeria_phage	1.4e-183	87.7
WP_039380821.1\|763108_763411_+	hypothetical protein	A0A059T5E6	Listeria_phage	5.9e-39	93.1
WP_003733521.1\|763410_763677_+\|holin	phage holin	A0A059T684	Listeria_phage	9.8e-38	93.1
WP_039382221.1\|763676_764288_+	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	7.7e-94	86.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage