Region

Region Position

Key proteins

CDS number

Tail region annotation

PhageTailFinder_1

5277 : 7370

Not Available

Tail region protein domain annotation

The phage proteins that are colored denote the protein is present at specific tail-related keywords (such as 'baseplate', 'spike', 'tail', 'fibre', 'tube', and 'sheath)

Protein_ID	CDD_ID	Domain_Def	E-value
NC_007054\|5277:7370\|HABLJLIE_00006\|5277_5556_+	gnl\|CDD\|153446	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins. The bacteriophage HK97 gp6 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. It forms a dodecameric ring structure that comprises the middle ring of the connector, located between the portal protein (attached to the head) and the gp7 ring (attached to the tail). It is a component of the mature phage and the absence of HK97 gp6 results in defective head-tail joining and the absence of mature phage particles. Although the crystal structure of HK97 gp6 shows an unexpected 13-mer ring, the biological form present in the mature phage is believed to be a dodecamer.	5.03657e-14
NC_007054\|5277:7370\|HABLJLIE_00007\|5567_5900_+	NA	NA	NA
NC_007054\|5277:7370\|HABLJLIE_00008\|5896_6298_+	NA	NA	NA
NC_007054\|5277:7370\|HABLJLIE_00009\|6298_6694_+	NA	NA	NA
NC_007054\|5277:7370\|HABLJLIE_00010\|6728_7370_+	gnl\|CDD\|273713	TIGR01603, Uncharacterized_phage_related_protein, phage major tail protein, phi13 family. This model describes a set of proteins that share low levels of sequence similarity but similar lengths and similar patterns of charged, hydrophobic, and Gly/Pro residues. All members (except one attributed to mouse embryo cDNA) belong to phage of Gram-positive bacteria. Several are identified as phage major tail proteins. Some members of this family have additional C-terminal regions of about 100 residues not included in this model. [Mobile and extrachromosomal element functions, Prophage functions].	1.03513e-11

PhageTailFinder_2

8538 : 17445

Not Available

Tail region protein domain annotation

The phage proteins that are colored denote the protein is present at specific tail-related keywords (such as 'baseplate', 'spike', 'tail', 'fibre', 'tube', and 'sheath)

Protein_ID	CDD_ID	Domain_Def	E-value
NC_007054\|8538:17445\|HABLJLIE_00014\|8538_14739_+	gnl\|CDD\|273790	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions].	1.2337e-105
NC_007054\|8538:17445\|HABLJLIE_00015\|14738_15563_+	gnl\|CDD\|399020	pfam05709, Sipho_tail, Phage tail protein. This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function.	5.06711e-45
NC_007054\|8538:17445\|HABLJLIE_00016\|15571_17155_+	gnl\|CDD\|408764	pfam18994, Prophage_tailD1, Prophage endopeptidase tail N-terminal domain. This domain represents the N-terminal domain of prophage tail proteins that are probably acting as endopeptidases. This domain has a RIFT related fold.	1.7444e-19
NC_007054\|8538:17445\|HABLJLIE_00017\|17154_17445_+	gnl\|CDD\|168296	PRK05926, PRK05926, hypothetical protein; Provisional.	0.00013397

Annotation

Column name	Description
Region	Detection method + the number assigned to the region, e.g. PhageTailFinder_1
Region Position	The start and end positions of the region on the phage genome
Key proteins	Key protein of tail region
CDS number	Protein number of tail region
Tail region annotation	Click the detail button to show detail domain annotation of the proteins in tail region

PhageTailFinder

NC_007054.1 Staphylococcus phage 47, complete genome

genome size:44777bp

Annotation