assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_902825205.1_SC467	NZ_LR782232	Escherichia coli isolate SC467 chromosome omosome1	1	1319153-1320340	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,19,19	19	Unclear	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_1|NZ_LR782232.1_1317862_1318003_-,NA	NA|919aa|up_9|NZ_LR782232.1_1305746_1308503_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_LR782232.1_1308559_1309861_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_LR782232.1_1309908_1312143_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_LR782232.1_1312220_1312469_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_LR782232.1_1312468_1312804_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_LR782232.1_1312874_1313666_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_LR782232.1_1313893_1315531_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_LR782232.1_1315618_1316917_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_LR782232.1_1317862_1318003_-	NA	NA|224aa|up_0|NZ_LR782232.1_1318141_1318813_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_LR782232.1_1320978_1322457_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_LR782232.1_1322483_1323761_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_LR782232.1_1324079_1324865_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_LR782232.1_1324934_1326389_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_LR782232.1_1326410_1327820_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_LR782232.1_1327797_1328577_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_LR782232.1_1328573_1329434_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_LR782232.1_1329581_1330157_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_LR782232.1_1330173_1330434_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_LR782232.1_1330424_1331696_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_902825205.1_SC467	NZ_LR782232	Escherichia coli isolate SC467 chromosome omosome1	2	1346042-1347290	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	20,20,20	20	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|245aa|up_9|NZ_LR782232.1_1336040_1336775_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_LR782232.1_1337039_1337192_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_LR782232.1_1337386_1340086_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_LR782232.1_1340183_1341746_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_LR782232.1_1341742_1342279_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_LR782232.1_1342290_1343346_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_LR782232.1_1343356_1344103_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_LR782232.1_1344084_1344735_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_LR782232.1_1344731_1345652_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_LR782232.1_1345651_1345945_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_LR782232.1_1347371_1348409_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_LR782232.1_1348660_1349569_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_LR782232.1_1349570_1350998_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_LR782232.1_1350997_1351603_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_LR782232.1_1351652_1351976_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_LR782232.1_1352169_1352481_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_LR782232.1_1352499_1353210_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_LR782232.1_1353209_1353689_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_LR782232.1_1353685_1354735_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_LR782232.1_1354715_1355477_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_902825205.1_SC467	NZ_LR782232	Escherichia coli isolate SC467 chromosome omosome1	3	2475318-2475441	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_6|NZ_LR782232.1_2484338_2484428_+	NA|471aa|up_9|NZ_LR782232.1_2464771_2466184_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_LR782232.1_2466740_2466950_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_LR782232.1_2467405_2468032_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_LR782232.1_2468052_2470155_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_LR782232.1_2470167_2470806_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_LR782232.1_2470869_2471538_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_LR782232.1_2471534_2472320_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_LR782232.1_2472323_2473136_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_LR782232.1_2473147_2474752_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_LR782232.1_2474877_2475183_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_LR782232.1_2475755_2477012_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_LR782232.1_2477052_2478426_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_LR782232.1_2478640_2479282_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|404aa|down_3|NZ_LR782232.1_2480761_2481973_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_4|NZ_LR782232.1_2482085_2483018_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_5|NZ_LR782232.1_2483014_2484040_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_6|NZ_LR782232.1_2484338_2484428_+	NA	NA|390aa|down_7|NZ_LR782232.1_2484593_2485763_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|NZ_LR782232.1_2485908_2486490_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_9|NZ_LR782232.1_2486617_2487433_-	pfam00877, NLPC_P60, NlpC/P60 family
GCF_902825205.1_SC467	NZ_LR782232	Escherichia coli isolate SC467 chromosome omosome1	4	3150445-3150536	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|70aa|up_9|NZ_LR782232.1_3139695_3139905_-,NA	NA|70aa|up_9|NZ_LR782232.1_3139695_3139905_-	NA	NA|1321aa|up_8|NZ_LR782232.1_3139959_3143922_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_LR782232.1_3143961_3144600_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_LR782232.1_3144887_3145979_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_LR782232.1_3145978_3146671_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_LR782232.1_3146682_3147069_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_LR782232.1_3147076_3147877_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_LR782232.1_3147886_3148477_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_LR782232.1_3148487_3148982_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_LR782232.1_3149002_3150331_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_LR782232.1_3150959_3151556_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_LR782232.1_3151576_3151804_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_LR782232.1_3151841_3153083_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|396aa|down_3|NZ_LR782232.1_3153371_3154559_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_LR782232.1_3154891_3155812_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_LR782232.1_3155811_3156117_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_LR782232.1_3156209_3156809_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_LR782232.1_3156805_3159352_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_LR782232.1_3159351_3160524_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_LR782232.1_3160653_3161346_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_902825205.1_SC467	NZ_LR782232	Escherichia coli isolate SC467 chromosome omosome1	5	3415388-3415532	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|330aa|up_9|NZ_LR782232.1_3403286_3404276_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_LR782232.1_3404672_3405581_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_LR782232.1_3405772_3407794_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_LR782232.1_3408372_3409050_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_LR782232.1_3409042_3409798_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_LR782232.1_3409784_3410939_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_LR782232.1_3410935_3411976_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_LR782232.1_3412062_3413352_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_LR782232.1_3413410_3413887_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_LR782232.1_3414038_3415322_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_LR782232.1_3415555_3417817_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_LR782232.1_3417999_3419433_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_LR782232.1_3419508_3420561_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_LR782232.1_3420744_3421698_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_LR782232.1_3421738_3422734_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_LR782232.1_3422888_3423707_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_LR782232.1_3423707_3424766_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_LR782232.1_3424768_3425458_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_LR782232.1_3425457_3426231_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_LR782232.1_3426397_3426547_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_902825205.1_SC467	NZ_LR782232	Escherichia coli isolate SC467 chromosome omosome1	6	3962521-3962614	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GGGGACTGATTTGTGCGCGTTGTTACATCG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|326aa|up_5|NZ_LR782232.1_3956835_3957813_-,NA|310aa|down_9|NZ_LR782232.1_3968905_3969835_+	NA|131aa|up_9|NZ_LR782232.1_3952600_3952993_-	pfam02561, FliS, Flagellar protein FliS	NA|439aa|up_8|NZ_LR782232.1_3953015_3954332_-	PRK08032, fliD, flagellar capping protein; Reviewed	NA|305aa|up_7|NZ_LR782232.1_3954538_3955453_-	NF033376, flg_lateral_LafA, lateral flagellin LafA	NA|281aa|up_6|NZ_LR782232.1_3955938_3956781_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|326aa|up_5|NZ_LR782232.1_3956835_3957813_-	NA	NA|310aa|up_4|NZ_LR782232.1_3957829_3958759_-	PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|459aa|up_3|NZ_LR782232.1_3958773_3960150_-	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated	NA|100aa|up_2|NZ_LR782232.1_3960338_3960638_-	PRK12708, flgJ, peptidoglycan hydrolase; Reviewed	NA|367aa|up_1|NZ_LR782232.1_3960637_3961738_-	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|222aa|up_0|NZ_LR782232.1_3961752_3962418_-	PRK12407, flgH, flagellar basal body L-ring protein FlgH	NA|262aa|down_0|NZ_LR782232.1_3962689_3963475_-	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|246aa|down_1|NZ_LR782232.1_3963653_3964391_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|401aa|down_2|NZ_LR782232.1_3964390_3965593_-	PRK06803, flgE, flagellar basal body protein FlaE	NA|238aa|down_3|NZ_LR782232.1_3965677_3966391_-	PRK09619, flgD, flagellar hook assembly protein FlgD	NA|144aa|down_4|NZ_LR782232.1_3966390_3966822_-	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|112aa|down_5|NZ_LR782232.1_3966824_3967160_-	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|246aa|down_6|NZ_LR782232.1_3967241_3967979_+	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA	NA|93aa|down_7|NZ_LR782232.1_3968059_3968338_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|143aa|down_8|NZ_LR782232.1_3968350_3968779_+	pfam05130, FlgN, FlgN protein	NA|310aa|down_9|NZ_LR782232.1_3968905_3969835_+	NA
