assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_902825185.1_SC457	NZ_LR782231	Escherichia coli isolate SC457 chromosome omosome1	1	2522590-2522723	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|84aa|up_9|NZ_LR782231.1_2509785_2510037_-	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|121aa|up_8|NZ_LR782231.1_2510043_2510406_-	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase	NA|114aa|up_7|NZ_LR782231.1_2510512_2510854_-	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase	NA|111aa|up_6|NZ_LR782231.1_2510857_2511190_-	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase	NA|215aa|up_5|NZ_LR782231.1_2512727_2513372_-	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB	NA|344aa|up_4|NZ_LR782231.1_2516152_2517184_-	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional	NA|298aa|up_3|NZ_LR782231.1_2517558_2518452_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|465aa|up_2|NZ_LR782231.1_2518626_2520021_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_1|NZ_LR782231.1_2520031_2521252_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_0|NZ_LR782231.1_2521248_2522529_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|down_0|NZ_LR782231.1_2522804_2524283_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|down_1|NZ_LR782231.1_2524284_2525679_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|down_2|NZ_LR782231.1_2525733_2527104_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_3|NZ_LR782231.1_2527296_2528733_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_4|NZ_LR782231.1_2528735_2529959_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_5|NZ_LR782231.1_2529955_2530435_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_6|NZ_LR782231.1_2530437_2531403_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_7|NZ_LR782231.1_2531405_2532527_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_8|NZ_LR782231.1_2532553_2533102_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_9|NZ_LR782231.1_2533117_2533864_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE
GCF_902825185.1_SC457	NZ_LR782231	Escherichia coli isolate SC457 chromosome omosome1	2	3220803-3221136	1,2	PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29	0	0	NA	NA	I-E:I-E	5,5	5	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_LR782231.1_3212615_3213377_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_LR782231.1_3213357_3214407_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_LR782231.1_3214403_3214883_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_LR782231.1_3214882_3215593_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_LR782231.1_3215611_3215923_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_LR782231.1_3216116_3216440_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_LR782231.1_3216489_3217095_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_LR782231.1_3217094_3218522_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_LR782231.1_3218523_3219432_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_LR782231.1_3219683_3220721_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_LR782231.1_3221232_3221526_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_LR782231.1_3221522_3222446_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_LR782231.1_3222442_3223093_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_LR782231.1_3223074_3223821_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_LR782231.1_3223831_3224887_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_LR782231.1_3224901_3225438_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_LR782231.1_3225434_3226997_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|886aa|down_7|NZ_LR782231.1_3227094_3229752_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_LR782231.1_3229989_3230142_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_LR782231.1_3230406_3231141_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_902825185.1_SC457	NZ_LR782231	Escherichia coli isolate SC457 chromosome omosome1	3	3246840-3247173	3,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,3	5	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|47aa|down_1|NZ_LR782231.1_3248321_3248462_+	NA|424aa|up_9|NZ_LR782231.1_3235486_3236758_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_LR782231.1_3236748_3237009_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_LR782231.1_3237025_3237601_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_LR782231.1_3237747_3238608_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_LR782231.1_3238604_3239384_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_LR782231.1_3239361_3240699_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_LR782231.1_3240791_3242246_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_LR782231.1_3242315_3243101_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_LR782231.1_3243419_3244697_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_LR782231.1_3244723_3246202_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_LR782231.1_3247511_3248183_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_LR782231.1_3248321_3248462_+	NA	NA|433aa|down_2|NZ_LR782231.1_3249405_3250704_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_LR782231.1_3250791_3252429_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_LR782231.1_3252656_3253448_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|83aa|down_5|NZ_LR782231.1_3253650_3253899_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_6|NZ_LR782231.1_3253976_3256211_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_7|NZ_LR782231.1_3256258_3257560_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|NZ_LR782231.1_3257616_3260373_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|447aa|down_9|NZ_LR782231.1_3260603_3261944_-	TIGR03247, glucar-dehydr, glucarate dehydratase
GCF_902825185.1_SC457	NZ_LR782231	Escherichia coli isolate SC457 chromosome omosome1	4	3514788-3514938	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	AAGGCGTTCACGCCGCATCCGGCAATCGTGCATAATGCCTGATGCGACGCTG	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|275aa|up_7|NZ_LR782231.1_3505380_3506205_-,NA	NA|357aa|up_9|NZ_LR782231.1_3503707_3504778_-	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF	NA|187aa|up_8|NZ_LR782231.1_3504808_3505369_-	COG3054, COG3054, Predicted transcriptional regulator [General function prediction only]	NA|275aa|up_7|NZ_LR782231.1_3505380_3506205_-	NA	NA|450aa|up_6|NZ_LR782231.1_3506204_3507554_-	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]	NA|253aa|up_5|NZ_LR782231.1_3507599_3508358_-	cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor	NA|238aa|up_4|NZ_LR782231.1_3508389_3509103_-	cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor	NA|231aa|up_3|NZ_LR782231.1_3509276_3509969_+	cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor	NA|500aa|up_2|NZ_LR782231.1_3510017_3511517_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|620aa|up_1|NZ_LR782231.1_3511808_3513668_-	PRK10507, PRK10507, bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional	NA|289aa|up_0|NZ_LR782231.1_3513872_3514739_+	PRK11752, PRK11752, putative S-transferase; Provisional	NA|83aa|down_0|NZ_LR782231.1_3514970_3515219_-	PRK10413, PRK10413, hydrogenase maturation factor HybG	NA|114aa|down_1|NZ_LR782231.1_3515231_3515573_-	PRK12380, PRK12380, hydrogenase/urease nickel incorporation protein	NA|163aa|down_2|NZ_LR782231.1_3515565_3516054_-	PRK10465, PRK10465, hydrogenase-2 assembly chaperone	NA|165aa|down_3|NZ_LR782231.1_3516046_3516541_-	PRK10466, hybD, HyaD/HybD family hydrogenase maturation endopeptidase	NA|568aa|down_4|NZ_LR782231.1_3516540_3518244_-	PRK10467, PRK10467, hydrogenase 2 large subunit; Provisional	NA|393aa|down_5|NZ_LR782231.1_3518240_3519419_-	PRK10881, PRK10881, Ni/Fe-hydrogenase cytochrome b subunit	NA|329aa|down_6|NZ_LR782231.1_3519408_3520395_-	PRK10882, PRK10882, hydrogenase 2 operon protein HybA	NA|373aa|down_7|NZ_LR782231.1_3520397_3521516_-	PRK10468, PRK10468, hydrogenase 2 small subunit; Provisional	NA|96aa|down_8|NZ_LR782231.1_3521704_3521992_-	pfam11115, DUF2623, Protein of unknown function (DUF2623)	NA|296aa|down_9|NZ_LR782231.1_3522110_3522998_-	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
