assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_902702775.1_9401240	NZ_LR738724	Streptococcus suis isolate 9401240 chromosome 1	1	16956-17073	1	CRISPRCasFinder	no	cas3	cas3,csa3,DinG,cas9,cas1,cas2,csn2,RT,DEDDh	Unclear	TGATAGAATAATTGAGTTGTCTCTTGAGG	29	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,DinG,cas9,cas1,cas2,csn2,RT,DEDDh	NA,NA	NA|112aa|up_9|NZ_LR738724.1_5521_5857_+	pfam15595, Imm51, Immunity protein 51	NA|190aa|up_8|NZ_LR738724.1_5908_6478_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1164aa|up_7|NZ_LR738724.1_6477_9969_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|91aa|up_6|NZ_LR738724.1_10018_10291_+	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|123aa|up_5|NZ_LR738724.1_10277_10646_+	COG2919, COG2919, Septum formation initiator [Cell division and chromosome partitioning]	NA|427aa|up_4|NZ_LR738724.1_10768_12049_+	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family	NA|423aa|up_3|NZ_LR738724.1_12049_13318_+	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|181aa|up_2|NZ_LR738724.1_13325_13868_+	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|658aa|up_1|NZ_LR738724.1_13889_15863_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|157aa|up_0|NZ_LR738724.1_16214_16685_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|279aa|down_0|NZ_LR738724.1_23815_24652_+	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|172aa|down_1|NZ_LR738724.1_24641_25157_+	pfam04093, MreD, rod shape-determining protein MreD	NA|419aa|down_2|NZ_LR738724.1_25241_26498_+	COG3883, COG3883, Uncharacterized protein conserved in bacteria [Function unknown]	NA|323aa|down_3|NZ_LR738724.1_26600_27569_+	PRK02269, PRK02269, ribose-phosphate diphosphokinase	NA|393aa|down_4|NZ_LR738724.1_27655_28834_+	PRK07309, PRK07309, pyridoxal phosphate-dependent aminotransferase	NA|261aa|down_5|NZ_LR738724.1_28820_29603_+	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO	NA|336aa|down_6|NZ_LR738724.1_29599_30607_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|83aa|down_7|NZ_LR738724.1_30599_30848_+	PRK12449, PRK12449, acyl carrier protein; Provisional	NA|236aa|down_8|NZ_LR738724.1_30965_31673_+	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed	NA|1240aa|down_9|NZ_LR738724.1_31685_35405_+	TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine synthase, clade II
GCF_902702775.1_9401240	NZ_LR738724	Streptococcus suis isolate 9401240 chromosome 1	2	87254-87371	2	CRISPRCasFinder	no		cas3,csa3,DinG,cas9,cas1,cas2,csn2,RT,DEDDh	Orphan	TGATAGAATAATTGAGTTGTCTCTTGAGG	29	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas9,cas1,cas2,csn2,RT,DEDDh	NA,NA|277aa|down_1|NZ_LR738724.1_94893_95724_+,NA|64aa|down_2|NZ_LR738724.1_95920_96112_+	NA|147aa|up_9|NZ_LR738724.1_80424_80865_+	PRK05592, rplO, 50S ribosomal protein L15; Reviewed	NA|437aa|up_8|NZ_LR738724.1_80878_82189_+	PRK09204, secY, preprotein translocase subunit SecY; Reviewed	NA|214aa|up_7|NZ_LR738724.1_82282_82924_+	PRK00279, adk, adenylate kinase; Reviewed	NA|73aa|up_6|NZ_LR738724.1_83045_83264_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|39aa|up_5|NZ_LR738724.1_83288_83405_+	pfam00444, Ribosomal_L36, Ribosomal protein L36	NA|122aa|up_4|NZ_LR738724.1_83424_83790_+	PRK05179, rpsM, 30S ribosomal protein S13; Validated	NA|128aa|up_3|NZ_LR738724.1_83807_84191_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|313aa|up_2|NZ_LR738724.1_84235_85174_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|129aa|up_1|NZ_LR738724.1_85188_85575_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|432aa|up_0|NZ_LR738724.1_85773_87069_+	COG3572, GshA, Gamma-glutamylcysteine synthetase [Coenzyme metabolism]	NA|78aa|down_0|NZ_LR738724.1_94653_94887_+	pfam00746, Gram_pos_anchor, LPXTG cell wall anchor motif	NA|277aa|down_1|NZ_LR738724.1_94893_95724_+	NA	NA|64aa|down_2|NZ_LR738724.1_95920_96112_+	NA	NA|148aa|down_3|NZ_LR738724.1_96278_96722_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|235aa|down_4|NZ_LR738724.1_96722_97427_+	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|271aa|down_5|NZ_LR738724.1_97419_98232_+	pfam00950, ABC-3, ABC 3 transport family	NA|504aa|down_6|NZ_LR738724.1_98241_99753_+	cd01017, AdcA, Metal binding protein AdcA	NA|149aa|down_7|NZ_LR738724.1_99855_100302_+	TIGR02698, Uncharacterized_16	NA|70aa|down_8|NZ_LR738724.1_100298_100508_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|126aa|down_9|NZ_LR738724.1_100535_100913_-	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
GCF_902702775.1_9401240	NZ_LR738724	Streptococcus suis isolate 9401240 chromosome 1	3	674038-674127	3	CRISPRCasFinder	no		cas3,csa3,DinG,cas9,cas1,cas2,csn2,RT,DEDDh	Orphan	CATGAACTGCCAGTCGGCGTTCTTCCCCCG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas9,cas1,cas2,csn2,RT,DEDDh	NA,NA	NA|239aa|up_9|NZ_LR738724.1_657716_658433_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|160aa|up_8|NZ_LR738724.1_658446_658926_+	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|334aa|up_7|NZ_LR738724.1_658944_659946_-	pfam01032, FecCD, FecCD transport family	NA|342aa|up_6|NZ_LR738724.1_659942_660968_-	pfam01032, FecCD, FecCD transport family	NA|310aa|up_5|NZ_LR738724.1_660981_661911_-	cd01138, FeuA, Periplasmic binding protein FeuA	NA|262aa|up_4|NZ_LR738724.1_661923_662709_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|482aa|up_3|NZ_LR738724.1_662860_664306_-	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|249aa|up_2|NZ_LR738724.1_664717_665464_+	COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]	NA|221aa|up_1|NZ_LR738724.1_665531_666194_+	TIGR01259, ComE_operon_protein_1, comEA protein	NA|746aa|up_0|NZ_LR738724.1_666177_668415_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|344aa|down_0|NZ_LR738724.1_674740_675772_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|202aa|down_1|NZ_LR738724.1_675884_676490_+	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|675aa|down_2|NZ_LR738724.1_676753_678778_+	cd07412, MPP_YhcR_N, Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain	NA|395aa|down_3|NZ_LR738724.1_682596_683781_-	cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins	NA|93aa|down_4|NZ_LR738724.1_683770_684049_-	PRK07248, PRK07248, chorismate mutase	NA|90aa|down_5|NZ_LR738724.1_684130_684400_-	PRK08881, rpsN, 30S ribosomal protein S14; Reviewed	NA|154aa|down_6|NZ_LR738724.1_684539_685001_-	PRK07308, PRK07308, flavodoxin; Validated	NA|315aa|down_7|NZ_LR738724.1_685095_686040_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|343aa|down_8|NZ_LR738724.1_686026_687055_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|94aa|down_9|NZ_LR738724.1_687134_687416_+	PRK01678, rpmE2, type B 50S ribosomal protein L31
GCF_902702775.1_9401240	NZ_LR738724	Streptococcus suis isolate 9401240 chromosome 1	4	748285-749970	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	cas3,csa3,DinG,cas9,cas1,cas2,csn2,RT,DEDDh	Type II-C,Type II-A,Type II-B	GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	25,25,20	25	TypeII-C,TypeII-A,TypeII-B	cas3,csa3,DinG,cas9,cas1,cas2,csn2,RT,DEDDh	NA|359aa|up_5|NZ_LR738724.1_738628_739705_-,NA	NA|193aa|up_9|NZ_LR738724.1_734556_735135_+	cd10033, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily	NA|262aa|up_8|NZ_LR738724.1_735206_735992_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|194aa|up_7|NZ_LR738724.1_736063_736645_+	pfam04011, LemA, LemA family	NA|490aa|up_6|NZ_LR738724.1_736656_738126_+	cd03399, SPFH_flotillin, Flotillin or reggie family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|359aa|up_5|NZ_LR738724.1_738628_739705_-	NA	NA|458aa|up_4|NZ_LR738724.1_739908_741282_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	cas9|1382aa|up_3|NZ_LR738724.1_742178_746324_+	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	cas1|289aa|up_2|NZ_LR738724.1_746323_747190_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|111aa|up_1|NZ_LR738724.1_747186_747519_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|222aa|up_0|NZ_LR738724.1_747520_748186_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|225aa|down_0|NZ_LR738724.1_750120_750795_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|404aa|down_1|NZ_LR738724.1_751122_752334_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|119aa|down_2|NZ_LR738724.1_752333_752690_+	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli	NA|270aa|down_3|NZ_LR738724.1_752701_753511_+	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|238aa|down_4|NZ_LR738724.1_753543_754257_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|755aa|down_5|NZ_LR738724.1_754594_756859_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|193aa|down_6|NZ_LR738724.1_756882_757461_-	pfam04892, VanZ, VanZ like family	NA|379aa|down_7|NZ_LR738724.1_757573_758710_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|247aa|down_8|NZ_LR738724.1_758722_759463_+	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|206aa|down_9|NZ_LR738724.1_759449_760067_+	cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X
GCF_902702775.1_9401240	NZ_LR738724	Streptococcus suis isolate 9401240 chromosome 1	5	1939019-1939106	5	CRISPRCasFinder	no	DEDDh	cas3,csa3,DinG,cas9,cas1,cas2,csn2,RT,DEDDh	Unclear	AGCGAACTTAGTTCGCATCAAAAGCT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas9,cas1,cas2,csn2,RT,DEDDh	NA|781aa|up_8|NZ_LR738724.1_1928605_1930948_-,NA|71aa|up_6|NZ_LR738724.1_1931897_1932110_-,NA|27aa|down_4|NZ_LR738724.1_1947584_1947665_-,NA|36aa|down_5|NZ_LR738724.1_1947893_1948001_-,NA|155aa|down_6|NZ_LR738724.1_1948217_1948682_-	NA|205aa|up_9|NZ_LR738724.1_1927950_1928565_+	PRK00150, def, peptide deformylase; Reviewed	NA|781aa|up_8|NZ_LR738724.1_1928605_1930948_-	NA	NA|295aa|up_7|NZ_LR738724.1_1930944_1931829_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|71aa|up_6|NZ_LR738724.1_1931897_1932110_-	NA	NA|287aa|up_5|NZ_LR738724.1_1932241_1933102_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|262aa|up_4|NZ_LR738724.1_1933429_1934215_-	TIGR00057, Putative_threonylcarbamoyl-AMP_synthase, tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family	NA|198aa|up_3|NZ_LR738724.1_1934274_1934868_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|464aa|up_2|NZ_LR738724.1_1934867_1936259_-	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|351aa|up_1|NZ_LR738724.1_1936255_1937308_-	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|521aa|up_0|NZ_LR738724.1_1937316_1938879_-	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	NA|78aa|down_0|NZ_LR738724.1_1939547_1939781_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|414aa|down_1|NZ_LR738724.1_1939839_1941081_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|201aa|down_2|NZ_LR738724.1_1941931_1942534_-	cd02140, Frm2-like, nitroreductase family protein	DEDDh|1464aa|down_3|NZ_LR738724.1_1942677_1947069_-	PRK00448, polC, DNA polymerase III PolC; Validated	NA|27aa|down_4|NZ_LR738724.1_1947584_1947665_-	NA	NA|36aa|down_5|NZ_LR738724.1_1947893_1948001_-	NA	NA|155aa|down_6|NZ_LR738724.1_1948217_1948682_-	NA	NA|330aa|down_7|NZ_LR738724.1_1949070_1950060_-	PRK14483, PRK14483, DhaKLM operon coactivator DhaQ; Provisional	NA|182aa|down_8|NZ_LR738724.1_1950070_1950616_-	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator	NA|330aa|down_9|NZ_LR738724.1_1950761_1951751_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional
