assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_902509525.1_Se_RP62a_UoM	NZ_LR735432	Staphylococcus epidermidis strain none isolate Se_RP62a-WT chromosome 1	1	98464-98717	1,1,1	CRISPRCasFinder,PILER-CR,CRT	no	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	Type III-B,Type III-A,Type III-D,Type III-C	GGATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC,GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC,GATCGATACCCACCCCGAAGAAAAGGGGACGAGAACTAGTA	37,36,41	0	0	NA	NA	NA:NA:NA	3,2,3	3	TypeIII-B,TypeIII-A,TypeIII-D,TypeIII-C	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	NA|74aa|up_3|NZ_LR735432.1_95078_95300_-,NA	NA|931aa|up_9|NZ_LR735432.1_86200_88993_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|194aa|up_8|NZ_LR735432.1_89084_89666_+	cd17246, RMtype1_S_SonII-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S	NA|519aa|up_7|NZ_LR735432.1_89666_91223_+	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|382aa|up_6|NZ_LR735432.1_91215_92361_+	cd17274, RMtype1_S_Eco540ANI-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|166aa|up_5|NZ_LR735432.1_92672_93170_-	PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional	NA|376aa|up_4|NZ_LR735432.1_93693_94821_+	cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)	NA|74aa|up_3|NZ_LR735432.1_95078_95300_-	NA	NA|168aa|up_2|NZ_LR735432.1_95314_95818_-	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|260aa|up_1|NZ_LR735432.1_96767_97547_+	pfam04507, DUF576, Csa1 family	NA|49aa|up_0|NZ_LR735432.1_97659_97806_+	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	cas1|302aa|down_0|NZ_LR735432.1_98787_99693_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|102aa|down_1|NZ_LR735432.1_99692_99998_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas10|758aa|down_2|NZ_LR735432.1_100010_102284_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|142aa|down_3|NZ_LR735432.1_102286_102712_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|215aa|down_4|NZ_LR735432.1_102713_103358_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|down_5|NZ_LR735432.1_103368_104277_+	TIGR01903, Hypothetical_protein	csm5gr7|341aa|down_6|NZ_LR735432.1_104279_105302_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm6|423aa|down_7|NZ_LR735432.1_105301_106570_+	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	cas6|245aa|down_8|NZ_LR735432.1_106566_107301_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|286aa|down_9|NZ_LR735432.1_108154_109012_+	cd10446, GIY-YIG_unchar_1, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria
GCF_902509525.1_Se_RP62a_UoM	NZ_LR735432	Staphylococcus epidermidis strain none isolate Se_RP62a-WT chromosome 1	2	624065-624147	2	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	Orphan	AAACAGAAGCAAAACAATCTATGAT	25	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|197aa|up_9|NZ_LR735432.1_615224_615815_+	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|226aa|up_8|NZ_LR735432.1_615807_616485_+	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|151aa|up_7|NZ_LR735432.1_616504_616957_+	pfam13185, GAF_2, GAF domain	NA|345aa|up_6|NZ_LR735432.1_616966_618001_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|219aa|up_5|NZ_LR735432.1_618029_618686_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|388aa|up_4|NZ_LR735432.1_618942_620106_+	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|149aa|up_3|NZ_LR735432.1_620811_621258_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|210aa|up_2|NZ_LR735432.1_621421_622051_+	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN	NA|122aa|up_1|NZ_LR735432.1_622174_622540_+	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|427aa|up_0|NZ_LR735432.1_622704_623985_+	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|117aa|down_0|NZ_LR735432.1_624267_624618_-	pfam16230, DUF4889, Domain of unknown function (DUF4889)	NA|141aa|down_1|NZ_LR735432.1_624808_625231_-	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only]	NA|702aa|down_2|NZ_LR735432.1_625303_627409_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|126aa|down_3|NZ_LR735432.1_628571_628949_-	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|482aa|down_4|NZ_LR735432.1_629102_630548_+	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|316aa|down_5|NZ_LR735432.1_630637_631585_-	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|100aa|down_6|NZ_LR735432.1_633743_634043_+	cd08545, YcnI_like, Reeler-like domain of YcnI and similar proteins	NA|139aa|down_7|NZ_LR735432.1_634256_634673_+	pfam11070, DUF2871, Protein of unknown function (DUF2871)	NA|134aa|down_8|NZ_LR735432.1_634741_635143_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|331aa|down_9|NZ_LR735432.1_635199_636192_-	cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases
GCF_902509525.1_Se_RP62a_UoM	NZ_LR735432	Staphylococcus epidermidis strain none isolate Se_RP62a-WT chromosome 1	3	2137675-2137770	3	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	Orphan	CACTGCAATTTTTAATTGCTTGTGTCACTTATG	33	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	NA|53aa|up_5|NZ_LR735432.1_2133693_2133852_+,NA|52aa|down_6|NZ_LR735432.1_2141517_2141673_-,NA|79aa|down_9|NZ_LR735432.1_2143830_2144067_+	NA|436aa|up_9|NZ_LR735432.1_2129916_2131224_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_8|NZ_LR735432.1_2131318_2132080_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|287aa|up_7|NZ_LR735432.1_2132401_2133262_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|64aa|up_6|NZ_LR735432.1_2133327_2133519_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|53aa|up_5|NZ_LR735432.1_2133693_2133852_+	NA	NA|271aa|up_4|NZ_LR735432.1_2134121_2134934_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_LR735432.1_2134954_2135650_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_LR735432.1_2135642_2136668_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_LR735432.1_2136920_2137217_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_LR735432.1_2137209_2137596_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|127aa|down_0|NZ_LR735432.1_2137855_2138236_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|118aa|down_1|NZ_LR735432.1_2138409_2138763_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|108aa|down_2|NZ_LR735432.1_2138905_2139229_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|181aa|down_3|NZ_LR735432.1_2139411_2139954_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_4|NZ_LR735432.1_2140034_2140751_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_5|NZ_LR735432.1_2140911_2141334_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|52aa|down_6|NZ_LR735432.1_2141517_2141673_-	NA	NA|167aa|down_7|NZ_LR735432.1_2142258_2142759_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|196aa|down_8|NZ_LR735432.1_2143029_2143617_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|79aa|down_9|NZ_LR735432.1_2143830_2144067_+	NA
GCF_902509525.1_Se_RP62a_UoM	NZ_LR735432	Staphylococcus epidermidis strain none isolate Se_RP62a-WT chromosome 1	4	2369955-2370043	4	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	Orphan	TCCACTCTATACTTTGATCTCTGAT	25	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|169aa|up_9|NZ_LR735432.1_2358261_2358768_-	pfam08741, YwhD, YwhD family	NA|433aa|up_8|NZ_LR735432.1_2358824_2360123_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|up_7|NZ_LR735432.1_2360214_2360691_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|225aa|up_6|NZ_LR735432.1_2361139_2361814_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|190aa|up_5|NZ_LR735432.1_2362024_2362594_-	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|315aa|up_4|NZ_LR735432.1_2362943_2363888_-	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|894aa|up_3|NZ_LR735432.1_2363911_2366593_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|313aa|up_2|NZ_LR735432.1_2367053_2367992_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|141aa|up_1|NZ_LR735432.1_2368148_2368571_+	pfam02082, Rrf2, Transcriptional regulator	NA|444aa|up_0|NZ_LR735432.1_2368575_2369907_+	PRK07251, PRK07251, FAD-containing oxidoreductase	NA|114aa|down_0|NZ_LR735432.1_2370295_2370637_-	pfam07293, DUF1450, Protein of unknown function (DUF1450)	NA|359aa|down_1|NZ_LR735432.1_2370847_2371924_-	TIGR01220, phosphomevalonate_kinase, phosphomevalonate kinase, ERG8-type, Gram-positive branch	NA|328aa|down_2|NZ_LR735432.1_2371936_2372920_-	TIGR01240, Diphosphomevalonate_decarboxylase, diphosphomevalonate decarboxylase	NA|307aa|down_3|NZ_LR735432.1_2372924_2373845_-	TIGR00549, Mevalonate_kinase, mevalonate kinase	NA|280aa|down_4|NZ_LR735432.1_2374537_2375377_-	cd16443, LplA, lipoate-protein ligase	NA|330aa|down_5|NZ_LR735432.1_2375376_2376366_-	PRK09653, eutD, phosphotransacetylase	NA|250aa|down_6|NZ_LR735432.1_2376536_2377286_+	PRK12276, PRK12276, putative heme peroxidase; Provisional	NA|255aa|down_7|NZ_LR735432.1_2377788_2378553_+	COG2966, COG2966, Uncharacterized conserved protein [Function unknown]	NA|151aa|down_8|NZ_LR735432.1_2378565_2379018_+	COG3610, COG3610, Uncharacterized conserved protein [Function unknown]	NA|497aa|down_9|NZ_LR735432.1_2379178_2380669_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]
