The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LR735421	Staphylococcus epidermidis strain none isolate Se_BPH0697 chromosome 1	2480158	34435	101641	2480158	transposase	Staphylococcus_phage(50.0%)	53	NA	NA
WP_001106057.1|34435_35110_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_000958858.1|36411_37155_+	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA	NA
WP_000872606.1|37251_37680_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_001801873.1|37725_39735_-	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NA	NA	NA	NA	NA
WP_001549960.1|39831_40818_+	beta-lactam sensor/signal transducer MecR1	NA	NA	NA	NA	NA
WP_001549961.1|40789_41050_+	DUF3387 domain-containing protein	NA	NA	NA	NA	NA
WP_001092189.1|42699_43206_-	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
WP_000700851.1|43220_43532_-	DUF960 domain-containing protein	NA	NA	NA	NA	NA
WP_000849672.1|43618_43969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001186608.1|44490_46119_-	recombinase family protein	NA	A0A0S2SXR4	Bacillus_phage	31.4	5.4e-46
WP_000815640.1|46140_47490_-	recombinase family protein	NA	Q9T200	Bacillus_phage	24.8	1.4e-18
WP_024937223.1|47723_49517_-	DUF927 domain-containing protein	NA	NA	NA	NA	NA
WP_000273823.1|49516_49813_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_001042023.1|50005_51052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000912116.1|51506_52661_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_000749912.1|52690_53491_+	abortive infection family protein	NA	NA	NA	NA	NA
WP_001141152.1|54168_54339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000195429.1|54575_55748_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000027972.1|56072_57038_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_002470713.1|57134_57323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002470711.1|57414_57744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000432278.1|57820_58180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100198947.1|58368_59510_-|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	97.8	2.6e-71
WP_000776433.1|60031_60529_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_064657812.1|61022_62150_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L7I1	Tupanvirus	31.3	5.9e-15
WP_104832450.1|62656_63835_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.2	5.7e-61
WP_173019346.1|64027_64186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002470708.1|64200_64704_-	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
WP_002511291.1|65639_66419_+	tandem-type lipoprotein	NA	NA	NA	NA	NA
WP_002470810.1|66842_67700_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_000025820.1|67985_68675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001799901.1|68745_69660_-	DUF1002 domain-containing protein	NA	NA	NA	NA	NA
WP_031795108.1|69628_69733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000255415.1|69759_70509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002505908.1|70543_71617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105987.1|72229_72904_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
WP_002505896.1|74001_75510_+	accessory Sec system glycosyltransferase GtfA	NA	NA	NA	NA	NA
WP_002505895.1|75502_76822_+	accessory Sec system glycosylation chaperone GtfB	NA	NA	NA	NA	NA
WP_002505894.1|76929_80049_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	27.1	5.0e-72
WP_002505893.1|80032_81265_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	31.1	1.2e-18
WP_002505892.1|81254_82769_-	SAM-dependent DNA methyltransferase	NA	A0A2H4PQP4	Staphylococcus_phage	30.2	6.4e-49
WP_032603192.1|84126_84900_+	tandem-type lipoprotein	NA	NA	NA	NA	NA
WP_002505889.1|85847_86723_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.9	2.0e-23
WP_002505888.1|86726_87848_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002470724.1|87813_88425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002505887.1|88505_89171_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.9	3.7e-25
WP_002505886.1|89158_90250_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_002505885.1|91349_91877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032603193.1|92537_93845_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_002505882.1|93848_96122_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_002505881.1|96376_97090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002469141.1|97775_99137_+	SLC45 family MFS transporter	NA	NA	NA	NA	NA
WP_155978672.1|100462_101641_+|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.0	1.6e-60
>prophage 2
NZ_LR735421	Staphylococcus epidermidis strain none isolate Se_BPH0697 chromosome 1	2480158	1049438	1096103	2480158	tRNA,integrase	Staphylococcus_phage(84.38%)	38	1038205:1038221	1051011:1051027
1038205:1038221	attL	AATATAATAATAAAGAA	NA	NA	NA	NA
WP_002456422.1|1049438_1049933_-|integrase	site-specific integrase	integrase	B7T092	Staphylococcus_virus	76.1	3.8e-67
WP_002456423.1|1050091_1050304_+	hypothetical protein	NA	A0A2H4JCA1	uncultured_Caudovirales_phage	72.9	7.3e-20
WP_002456424.1|1050683_1051418_-	hypothetical protein	NA	NA	NA	NA	NA
1051011:1051027	attR	TTCTTTATTATTATATT	NA	NA	NA	NA
WP_002456426.1|1051944_1052232_-	hypothetical protein	NA	A0A2H4JGN1	uncultured_Caudovirales_phage	50.0	5.5e-18
WP_002456427.1|1052393_1053059_-	Ltp family lipoprotein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	41.8	7.0e-08
WP_002456429.1|1054309_1055734_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	63.9	6.6e-173
WP_002486229.1|1055723_1056725_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	50.2	6.9e-92
WP_002457867.1|1056721_1056970_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	83.1	6.5e-36
WP_002468782.1|1057040_1057508_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	58.1	3.2e-44
WP_002456431.1|1057494_1058280_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.3	2.0e-99
WP_155978694.1|1058510_1060103_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	83.0	4.7e-268
WP_001829830.1|1060472_1061672_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	85.4	4.1e-192
WP_001829840.1|1061774_1062683_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	80.2	1.5e-101
WP_001829832.1|1062862_1063699_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	73.3	1.0e-120
WP_002469577.1|1063983_1064139_+	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	79.6	5.2e-15
WP_001830729.1|1064465_1064819_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	32.5	8.5e-05
WP_001830726.1|1064815_1065181_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	57.0	4.1e-34
WP_002446728.1|1065219_1065528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484454.1|1065804_1066518_+	transaldolase	NA	M1PR54	Cyanophage	37.4	7.0e-22
WP_002467846.1|1066657_1067101_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.5	4.1e-20
WP_001830734.1|1067087_1067531_-	competence protein ComK	NA	NA	NA	NA	NA
WP_002484457.1|1067536_1068016_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	42.9	9.1e-26
WP_002456441.1|1068223_1068439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830727.1|1068816_1069668_+	glucosaminidase domain-containing protein	NA	A0A1J0MFB0	Staphylococcus_phage	35.6	1.0e-32
WP_002484471.1|1070015_1071500_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	65.6	2.5e-13
WP_002494782.1|1071935_1072979_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	66.8	8.9e-135
WP_002467848.1|1072985_1073618_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	77.6	1.1e-87
WP_002485748.1|1073630_1074812_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	75.8	4.3e-178
WP_002456446.1|1074824_1075286_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	84.2	1.2e-59
WP_002484452.1|1075543_1076545_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	69.7	5.8e-131
WP_002484455.1|1076787_1077615_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002484465.1|1078104_1078521_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001830894.1|1078742_1079306_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	66.5	1.9e-67
WP_001830802.1|1079302_1080256_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.7	3.3e-67
WP_001830884.1|1080362_1081577_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	83.7	4.6e-183
WP_002484468.1|1081865_1084283_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.3	0.0e+00
WP_001830891.1|1084308_1084620_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	71.8	4.1e-35
WP_002484464.1|1085024_1096103_+	YSIRK signal domain/LPXTG anchor domain surface protein	NA	A0A2H4PQU6	Staphylococcus_phage	26.2	3.2e-28
>prophage 3
NZ_LR735421	Staphylococcus epidermidis strain none isolate Se_BPH0697 chromosome 1	2480158	1210148	1219267	2480158	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001830787.1|1210148_1211153_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001830755.1|1211154_1212180_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001830840.1|1212200_1213340_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.3e-83
WP_001830800.1|1213355_1213616_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.3	5.7e-06
WP_002456476.1|1213954_1216246_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	36.6	7.0e-31
WP_001830033.1|1216401_1216557_-	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	77.6	2.6e-14
WP_002456477.1|1216993_1219267_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.6	1.3e-66
>prophage 4
NZ_LR735421	Staphylococcus epidermidis strain none isolate Se_BPH0697 chromosome 1	2480158	1812066	1820536	2480158		Synechococcus_phage(33.33%)	9	NA	NA
WP_002475231.1|1812066_1812633_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.5	6.1e-29
WP_002505722.1|1812632_1813664_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.4	1.6e-64
WP_002446152.1|1813656_1815141_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.2e-44
WP_155978713.1|1815119_1817309_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.3	1.6e-138
WP_002475236.1|1817301_1817973_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_002446149.1|1817974_1818235_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002486585.1|1818234_1818939_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	H8ZMN3	Synechococcus_phage	42.5	2.8e-47
WP_002475241.1|1818939_1820067_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002457464.1|1820053_1820536_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	2.0e-20
>prophage 5
NZ_LR735421	Staphylococcus epidermidis strain none isolate Se_BPH0697 chromosome 1	2480158	1847430	1857784	2480158	transposase	Staphylococcus_phage(30.77%)	15	NA	NA
WP_001831694.1|1847430_1847646_+	NINE protein	NA	A0A060AN66	Enterococcus_phage	40.4	1.6e-06
WP_002475755.1|1848188_1848719_+	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	60.5	3.9e-54
WP_002505719.1|1850104_1850332_+	DUF2188 domain-containing protein	NA	A0A142KA22	Gordonia_phage	46.0	2.2e-06
WP_173019357.1|1850328_1850538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002439266.1|1851567_1851774_+	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	95.6	5.6e-33
WP_002439265.1|1851762_1851927_-	hypothetical protein	NA	Q4ZDZ8	Staphylococcus_virus	71.2	3.6e-14
WP_002505715.1|1851923_1852178_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFJ4	Staphylococcus_phage	83.1	1.4e-30
WP_002439260.1|1852371_1852701_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J641	uncultured_Caudovirales_phage	96.3	2.5e-51
WP_002469232.1|1852712_1853174_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A141VTQ3	Staphylococcus_phage	94.8	2.8e-80
WP_002505714.1|1853189_1853708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002439254.1|1853709_1854153_+	hypothetical protein	NA	A0A2H4J2Y4	uncultured_Caudovirales_phage	94.3	2.1e-21
WP_002439253.1|1854225_1854420_+	hypothetical protein	NA	A0A1W6JQ63	Staphylococcus_phage	75.7	2.1e-05
WP_002439252.1|1854488_1855004_+	hypothetical protein	NA	A0A0H3U494	Staphylococcus_phage	48.0	5.9e-39
WP_002439251.1|1855005_1855341_+	hypothetical protein	NA	Q9G043	Staphylococcus_virus	86.8	1.4e-09
WP_155978672.1|1856605_1857784_+|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.0	1.6e-60
>prophage 6
NZ_LR735421	Staphylococcus epidermidis strain none isolate Se_BPH0697 chromosome 1	2480158	2061973	2072397	2480158		uncultured_Caudovirales_phage(66.67%)	10	NA	NA
WP_002505671.1|2061973_2062753_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.6	8.7e-18
WP_002445926.1|2062749_2063709_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	92.0	3.8e-15
WP_002491228.1|2063692_2064667_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	99.1	1.3e-164
WP_002505670.1|2064682_2064862_-	hypothetical protein	NA	A0A2H4IYB4	uncultured_Caudovirales_phage	65.6	1.7e-09
WP_001829597.1|2064913_2065882_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	100.0	3.9e-185
WP_002457603.1|2066000_2068106_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	99.4	0.0e+00
WP_001829589.1|2068068_2068467_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	100.0	2.0e-71
WP_002445920.1|2069220_2070096_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002468857.1|2070109_2070610_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	1.1e-50
WP_002491237.1|2070891_2072397_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.0	5.5e-61
>prophage 7
NZ_LR735421	Staphylococcus epidermidis strain none isolate Se_BPH0697 chromosome 1	2480158	2094084	2101346	2480158		Pandoravirus(16.67%)	10	NA	NA
WP_001830323.1|2094084_2095236_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	39.6	7.5e-26
WP_001830349.1|2095225_2095813_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_002487865.1|2096109_2096781_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.7	5.3e-64
WP_001830341.1|2096785_2097205_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_001830330.1|2097205_2097919_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	44.8	1.6e-55
WP_001830331.1|2098020_2098620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002485887.1|2098969_2099125_+	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	77.6	4.4e-14
WP_001830329.1|2099720_2100158_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_002487859.1|2100208_2100682_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001830352.1|2100656_2101346_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	3.4e-34
