The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LR723670	Rhizobium flavum strain YW14 chromosome 1	4055910	624667	661448	4055910	integrase,transposase	EBPR_siphovirus(20.0%)	30	626453:626471	665695:665713
WP_152338401.1|624667_625864_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	46.5	2.6e-93
626453:626471	attL	GTCATAGTTGGAGAGGCGA	NA	NA	NA	NA
WP_077548631.1|626643_627066_+	MucR family transcriptional regulator	NA	A0A1P8VVG0	Erythrobacter_phage	41.5	8.3e-15
WP_152338402.1|627070_628195_-	DUF4214 domain-containing protein	NA	NA	NA	NA	NA
WP_077548633.1|628324_628621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077548634.1|628724_629813_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	35.3	2.8e-14
WP_077548635.1|630213_631089_+	lysozyme	NA	F8TV87	EBPR_siphovirus	44.6	4.7e-36
WP_172977803.1|631585_632104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152338403.1|632317_633283_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_172977804.1|634737_635193_-	hypothetical protein	NA	K4I0S3	Escherichia_phage	32.1	2.8e-08
WP_172977805.1|635524_637603_+	DUF4214 domain-containing protein	NA	F8TV35	EBPR_siphovirus	33.9	1.3e-07
WP_152338473.1|640032_640647_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA	NA
WP_152338404.1|641572_642943_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_142523325.1|643917_644265_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	61.7	2.2e-37
WP_152338405.1|644261_644672_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_139346153.1|647919_649446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077546946.1|649636_650587_+	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	48.0	1.3e-71
WP_077546945.1|650583_650970_+	GtrA family protein	NA	NA	NA	NA	NA
WP_172977806.1|651225_651507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152338403.1|651716_652682_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_152338406.1|652760_653927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077546942.1|654338_654581_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_077546944.1|654604_655045_+	PIN domain-containing protein	NA	NA	NA	NA	NA
WP_077546941.1|655281_655596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139346151.1|655829_656894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077546939.1|657338_658436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077546938.1|658513_658867_+	DUF2958 domain-containing protein	NA	A0A1W6DX76	Sphingobium_phage	61.6	9.0e-31
WP_077546937.1|658863_659265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077546936.1|659307_659832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077546935.1|659842_660100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077546934.1|660266_661448_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A221SAN4	Ralstonia_phage	32.8	7.5e-37
665695:665713	attR	TCGCCTCTCCAACTATGAC	NA	NA	NA	NA
>prophage 2
NZ_LR723670	Rhizobium flavum strain YW14 chromosome 1	4055910	1038645	1084495	4055910	portal,protease,capsid,tail,transposase,head	Hokovirus(10.0%)	54	NA	NA
WP_139346193.1|1038645_1039065_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_077547711.1|1039054_1039855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077547712.1|1039858_1040281_-	SufE family protein	NA	NA	NA	NA	NA
WP_077547713.1|1040464_1040893_-	DUF5330 domain-containing protein	NA	NA	NA	NA	NA
WP_077547714.1|1041382_1042906_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	33.6	5.3e-27
WP_077547715.1|1042874_1043843_+	peptidoglycan-binding protein	NA	NA	NA	NA	NA
WP_152338417.1|1043898_1044246_+	DUF1491 family protein	NA	NA	NA	NA	NA
WP_172977817.1|1044250_1045267_-	DUF2336 domain-containing protein	NA	NA	NA	NA	NA
WP_077547717.1|1045746_1045935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077547718.1|1045959_1046523_-	DUF1254 domain-containing protein	NA	NA	NA	NA	NA
WP_077547719.1|1046515_1047103_-	DUF1214 domain-containing protein	NA	NA	NA	NA	NA
WP_077547720.1|1047170_1049396_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_077547721.1|1049543_1050008_+	YcgN family cysteine cluster protein	NA	NA	NA	NA	NA
WP_077547722.1|1050014_1050680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077547723.1|1050798_1051458_-	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_077547724.1|1051604_1053986_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	31.7	6.5e-80
WP_077547725.1|1053997_1054420_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_052637563.1|1054474_1054672_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_077547726.1|1054748_1055153_-	response regulator	NA	NA	NA	NA	NA
WP_077547727.1|1055515_1056232_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_077547728.1|1056295_1056547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077547729.1|1056550_1057264_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_077547730.1|1057555_1057810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077547731.1|1057879_1058164_+	acylphosphatase	NA	NA	NA	NA	NA
WP_077547732.1|1058317_1058992_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077547733.1|1058998_1060786_-	flagellin	NA	NA	NA	NA	NA
WP_077547734.1|1061025_1061664_-	porin family protein	NA	NA	NA	NA	NA
WP_077547735.1|1061986_1063471_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	34.5	4.3e-50
WP_077547736.1|1063471_1064086_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_077547737.1|1064178_1065498_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	62.6	1.2e-136
WP_077547738.1|1065723_1066629_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_077547739.1|1066809_1067292_+	VOC family protein	NA	NA	NA	NA	NA
WP_077547740.1|1067288_1067504_+	DUF4287 domain-containing protein	NA	NA	NA	NA	NA
WP_077547979.1|1067799_1068066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077547741.1|1068344_1068614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077547980.1|1068812_1071065_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	A0A0P0I429	Acinetobacter_phage	25.2	7.1e-36
WP_077547742.1|1071076_1072093_-	xanthine dehydrogenase family protein subunit M	NA	NA	NA	NA	NA
WP_077547743.1|1072089_1072611_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_077547744.1|1072830_1073067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077547745.1|1073092_1074073_-	glutaminase A	NA	NA	NA	NA	NA
WP_077547746.1|1074383_1075088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172977894.1|1075167_1076574_+	DNA-packaging protein	NA	A0A1V0DY66	Dinoroseobacter_phage	40.4	5.0e-72
WP_172972334.1|1076575_1076716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077547747.1|1076871_1077504_+	hypothetical protein	NA	R9U4A9	Rhizobium_phage	47.1	1.8e-42
WP_077547748.1|1077575_1078190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077547749.1|1078268_1079444_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	36.5	6.2e-60
WP_077547750.1|1079513_1079777_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_077547751.1|1079776_1080076_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_077547752.1|1080256_1080574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077547753.1|1080621_1081239_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	47.9	7.9e-30
WP_077547754.1|1081235_1082507_+|capsid	phage major capsid protein	capsid	A0A2D1GNH4	Pseudomonas_phage	45.9	5.7e-83
WP_077547755.1|1083300_1083633_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_077547757.1|1083629_1084049_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_077547759.1|1084087_1084495_+|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
>prophage 3
NZ_LR723670	Rhizobium flavum strain YW14 chromosome 1	4055910	1156331	1211239	4055910	integrase,transposase	Corynebacterium_phage(33.33%)	48	1180672:1180731	1209813:1211328
WP_152338409.1|1156331_1157528_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	47.5	4.7e-95
WP_077546339.1|1157617_1158349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077546338.1|1158836_1159166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172977820.1|1159319_1161416_-	ATP-dependent helicase	NA	NA	NA	NA	NA
WP_077546336.1|1161418_1162423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172977821.1|1162531_1163164_-	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_172977822.1|1163225_1163381_-	DUF4357 domain-containing protein	NA	NA	NA	NA	NA
WP_077546333.1|1163592_1166691_-	site-specific DNA-methyltransferase	NA	A0A222ZMD5	Mycobacterium_phage	25.4	9.8e-20
WP_077546332.1|1166692_1167298_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172977823.1|1167305_1168106_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_077546330.1|1168102_1171189_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_077546329.1|1171481_1171799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077546328.1|1172094_1172484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077546327.1|1173766_1174957_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	30.6	3.1e-14
WP_139346110.1|1175451_1175655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077546325.1|1175707_1176997_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_077546324.1|1177307_1177583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152338409.1|1178086_1179283_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	47.5	4.7e-95
WP_139346218.1|1179599_1180694_+	hypothetical protein	NA	NA	NA	NA	NA
1180672:1180731	attL	TTGTCCGTCGTCGAATGATTTGAAACTTTTTGGGCGTGGGAAGATTGGAGTTTCCGGCTC	NA	NA	NA	NA
WP_152338390.1|1180746_1182098_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_077546341.1|1183717_1185949_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_172977824.1|1186162_1187053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052820534.1|1187344_1187812_-	Hsp20 family protein	NA	A0A2H4N7P1	Lake_Baikal_phage	37.1	2.3e-18
WP_152338424.1|1188185_1188494_+	DUF982 domain-containing protein	NA	NA	NA	NA	NA
WP_152338409.1|1188574_1189771_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	47.5	4.7e-95
WP_152338425.1|1190642_1192130_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA	NA
WP_077549028.1|1192143_1194372_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.6	2.8e-85
WP_077549029.1|1194368_1194554_+	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
WP_077549030.1|1194550_1195054_+	polyketide cyclase	NA	NA	NA	NA	NA
WP_142523899.1|1195184_1196258_+	nitrite reductase, copper-containing	NA	NA	NA	NA	NA
WP_077549032.1|1196351_1196855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052821107.1|1196854_1197310_-	DUF305 domain-containing protein	NA	NA	NA	NA	NA
WP_052821108.1|1197532_1197865_-	four-helix bundle copper-binding protein	NA	NA	NA	NA	NA
WP_077549033.1|1197869_1198352_-	DUF305 domain-containing protein	NA	A0A218MND9	uncultured_virus	37.2	3.2e-10
WP_077549034.1|1198928_1199315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062654123.1|1199400_1199622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077549042.1|1199621_1201082_+	TolC family protein	NA	NA	NA	NA	NA
WP_062654122.1|1201093_1202452_+	copper oxidase	NA	NA	NA	NA	NA
WP_062654121.1|1202482_1202959_+	copper oxidase	NA	NA	NA	NA	NA
WP_062654119.1|1202979_1203264_+	copper-binding protein	NA	NA	NA	NA	NA
WP_077549035.1|1203317_1203767_+	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_077549036.1|1203831_1204236_-	MerR family DNA-binding protein	NA	NA	NA	NA	NA
WP_077549037.1|1204290_1205079_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_139346304.1|1205237_1205807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077549039.1|1205861_1206401_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_077549040.1|1206662_1207283_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WF93	Clostridium_phage	29.4	8.5e-08
WP_152338426.1|1207775_1209026_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_152338390.1|1209887_1211239_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
1209813:1211328	attR	TTGTCCGTCGTCGAATGATTTGAAACTTTTTGGGCGTGGGAAGATTGGAGTTTCCGGCTCGGTTTTCGGGTTGATTTAAGCCGCTTTGGCCTGGTGGTTCAAGCGGCGTTGTCTGATGGTGTCGCGTTTGATCCTTTCGCGTTCGAGGAGGATTGTTTGGCCGCGCCCGAAGTAGACGTCGGCCGGGGTGAGATTTTCGAGGCTCTCGTGGTATCGGCGATGATTGTAATGCTCCACGAAGGCCGCGATCTGCGCTTCGAGGTCTTCCTGGAAGAAGTAGTTTTCCAGCAGAATGCGGCTCTTCAACGTCTGGTGCCAGCGCTCGATCTTGCCCTGCGTTTGGGGGTGGCCGGGAGCCCCGTGAACCTGATCGATCTTGTATTTGTCCAGCCATTCGCCGAGATCTGAGGCGACGTAACACGGGCCGTTATCCGACAGCAGGCGCGGCCGGTGTTCGACCTTGACCTTGTCGCAGCCTGAGGCGGCCAGCGCCAGGTCGAGCGTGTCGGTGACATCCTCGACCTTCATGCTGGTGCACAGCTTCCAGGCGATGATGTAGCGGGAATAATCGTCGAGGATGGTCGACAGATAGAACCATCCCCAGCCGATGACCTTCAAGTAGGTGAAGTCAGTTTGCCACATCTCGTTCGGGCGCGTGGTCTTGTCCTTGAATTCGTCATTGGCCTTGATGACGATATAGGCTGGCGAGGTGATTAGGTCATGGGCCTTGAGCAGGCGGTAGACCGAAGCCTCTGAGACGAAATAGCTTTCCATGTCGGTGAACTTCACCGCCAGCTCGCGTGGCGACAGATCGGCATGATCGAGCGCGAGTGTGATGATGCGATCCCTGATATCGTCGGGGATACGGTTCCACACCCGTGACGGCGCGGATGTCCGGTCTTCCAGCCCCTCAACACCGTGGGTCTGGAAGCGATCATACCAGCGATAGAAGGTTGGTCTTGGAATGCCGAGCTTGTCGAGGGTTTGCCTGGCTGGCAGATGAGACCCCTCGACAAGCCGGATGATCTCGAGTTTTTCGGTGGCGGGATATCTCATTCTTCGTCGCCCCCATCCGCGATCATGCTTTTTTTAAGCAGGCGGTTTTCCAGGGTGAGGTCGGCCAGCGCCTCTTTCAGGTCGCGGCTTTCACGGCGTAGCGCCTTGACCTCATCGCTGGTGGCCGAGCGGGCAGTGTCACCGGCTAGCCGCTTCTTGCCCGCTTCGAGGAATTCCTTCGACCAGCTATAATACAGGCTCTCGGCGATCCCTTCGCGGCGGCAGATCGCGGCAATGCTGTCTTCACCGCGAAGGCCTTCCAGCACGATGCGGATTTTCTCCTCCGACGAATGGTGCTTGCGCGTGGCGCGACGGATATCCTTGATCGTCTTCTCGGCCGACGATGTCTGCGGCCCGGTTTTCTGTCTCATCTTCGCTTCCTTTGAATGAGCTACGATGAGCCGAAAATCCTCTCTTCTCAATTAAACCAGTTCTGTCTCATAGGCGTTGATGGCGGACA	NA	NA	NA	NA
>prophage 4
NZ_LR723670	Rhizobium flavum strain YW14 chromosome 1	4055910	1616717	1625587	4055910	tRNA	uncultured_Mediterranean_phage(75.0%)	10	NA	NA
WP_152338476.1|1616717_1617524_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	34.8	2.8e-35
WP_077547303.1|1617513_1618230_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	45.8	1.1e-38
WP_152338432.1|1618280_1619390_+	ATP-binding cassette domain-containing protein	NA	Q6GZ03	Mycoplasma_phage	27.7	8.6e-11
WP_052638204.1|1619420_1619627_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	56.9	1.1e-07
WP_077547305.1|1619659_1620322_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_052638206.1|1620318_1621143_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	40.7	1.2e-44
WP_077547306.1|1621197_1622481_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.0	5.9e-96
WP_077547307.1|1622480_1623257_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	31.7	3.5e-27
WP_052638209.1|1623253_1623907_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	NA	NA	NA	NA
WP_172977900.1|1624087_1625587_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	31.7	3.6e-12
>prophage 5
NZ_LR723670	Rhizobium flavum strain YW14 chromosome 1	4055910	1839781	1849541	4055910		uncultured_Mediterranean_phage(66.67%)	8	NA	NA
WP_077546284.1|1839781_1840297_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	60.0	1.3e-46
WP_077546254.1|1840344_1840911_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	54.9	5.5e-46
WP_077546255.1|1840932_1841427_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	35.9	1.8e-24
WP_052638394.1|1841652_1841832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077546256.1|1842108_1844922_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.3	1.3e-95
WP_077546257.1|1845147_1845780_+	MarC family protein	NA	NA	NA	NA	NA
WP_077546258.1|1845821_1846367_-	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	76.3	1.4e-46
WP_077546259.1|1846619_1849541_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	61.1	0.0e+00
>prophage 1
NZ_LR723671	Rhizobium flavum strain YW14 plasmid 2	227935	0	70758	227935	transposase,integrase	Salmonella_phage(18.18%)	52	49506:49525	69073:69092
WP_152338480.1|0_1781_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	43.6	5.6e-137
WP_077548363.1|1818_2127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152338481.1|2132_3806_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_139346263.1|5018_5279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077548649.1|6841_7186_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	58.5	7.7e-35
WP_077548650.1|7233_8886_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	42.3	3.0e-100
WP_139346264.1|9578_10292_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	34.1	1.3e-12
WP_077548653.1|10996_12367_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_077548654.1|12431_14093_-	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA	NA
WP_077548655.1|14239_16894_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_139346265.1|16980_17772_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_077548657.1|17778_18867_-	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA	NA
WP_172977913.1|18893_20129_-	CoA transferase	NA	NA	NA	NA	NA
WP_172977914.1|20290_21067_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_077548660.1|21077_22232_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA	NA
WP_172977915.1|22260_24357_+	CoA transferase	NA	NA	NA	NA	NA
WP_077548662.1|24395_25151_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_077548663.1|25507_26302_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_077548664.1|26392_27337_+	hydroxymethylglutaryl-CoA lyase	NA	A0A1V0SKU2	Klosneuvirus	27.6	4.7e-18
WP_077548665.1|27341_28541_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA	NA
WP_077548666.1|28557_29694_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA	NA
WP_077548667.1|29725_30508_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_077548668.1|30519_31311_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_077548677.1|31399_32620_+	CoA transferase	NA	NA	NA	NA	NA
WP_077548669.1|32849_34079_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077548678.1|34135_35020_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_172977916.1|35016_36027_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_172977932.1|36032_36755_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.5	1.7e-12
WP_077548672.1|36794_37526_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	8.2e-18
WP_077548679.1|37539_38409_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_077548673.1|38405_39194_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_077548674.1|39214_39964_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_077548675.1|39991_40921_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_152338482.1|40926_42591_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_172977917.1|42705_43938_+	MFS transporter	NA	NA	NA	NA	NA
WP_152338483.1|44109_47583_+	pyruvate carboxylase	NA	NA	NA	NA	NA
WP_077546960.1|47965_48610_+	RraA family protein	NA	NA	NA	NA	NA
49506:49525	attL	ACACAAAGTGAGGAAGAACC	NA	NA	NA	NA
WP_077546959.1|49655_50120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077546958.1|50091_53061_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	39.3	6.2e-189
WP_077546957.1|53075_53681_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	53.1	2.8e-40
WP_077546956.1|53822_55373_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_077546955.1|55359_56520_-	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_077546954.1|56512_56968_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_077546953.1|57065_57533_+	universal stress protein	NA	NA	NA	NA	NA
WP_139346155.1|57662_59351_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_077547855.1|59692_60058_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_077546952.1|61670_62429_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	41.4	8.4e-42
WP_172977918.1|63687_64734_-|integrase	site-specific integrase	integrase	A0A076YL28	Mesorhizobium_phage	39.0	8.4e-32
WP_152338485.1|64814_65888_-	porin	NA	NA	NA	NA	NA
WP_139346332.1|66761_67154_+	oxidoreductase	NA	NA	NA	NA	NA
WP_077549415.1|67343_69023_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_152338494.1|69177_70758_+|transposase	ISL3-like element ISRsp8 family transposase	transposase	NA	NA	NA	NA
69073:69092	attR	GGTTCTTCCTCACTTTGTGT	NA	NA	NA	NA
>prophage 1
NZ_LR723672	Rhizobium flavum strain YW14 plasmid 3	206959	27946	88995	206959	transposase,integrase	Escherichia_phage(18.18%)	53	24217:24233	69368:69384
24217:24233	attL	TCGTCGAATTCTTCGAT	NA	NA	NA	NA
WP_077549417.1|27946_29104_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_077549226.1|29184_29463_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_077549225.1|29449_29881_+	plasmid maintenance toxin (PemK-like)	NA	NA	NA	NA	NA
WP_152338497.1|30088_31267_+	DUF1612 domain-containing protein	NA	NA	NA	NA	NA
WP_152338498.1|33124_33583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152338427.1|33575_34649_+	porin	NA	NA	NA	NA	NA
WP_172977826.1|34729_35776_+|integrase	site-specific integrase	integrase	A0A076YL28	Mesorhizobium_phage	38.2	1.4e-31
WP_172977934.1|36075_36213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152338499.1|36823_38041_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_152338500.1|38055_41202_+	multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.3	5.8e-44
WP_152338501.1|41198_41810_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_052642687.1|42008_42722_-|transposase	IS6-like element ISRsp9 family transposase	transposase	A0A077SL39	Escherichia_phage	34.9	2.7e-18
WP_152338502.1|42731_43931_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA	NA
WP_077549194.1|44957_45953_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_077549195.1|45949_48496_+	cytochrome c oxidase subunit I	NA	NA	NA	NA	NA
WP_077549196.1|48503_48881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077549197.1|48912_50271_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_077549198.1|50543_51290_+	peptidoglycan-binding protein	NA	NA	NA	NA	NA
WP_152338503.1|51408_53961_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	38.3	1.3e-131
WP_152338504.1|54031_54538_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_077549200.1|54757_56092_-	DUF882 domain-containing protein	NA	NA	NA	NA	NA
WP_077549201.1|56353_57472_-	cell wall hydrolase	NA	A0A218MLD1	uncultured_virus	44.3	9.9e-23
WP_077549202.1|58347_58944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077549203.1|59223_60555_+	Nramp family divalent metal transporter	NA	NA	NA	NA	NA
WP_077549204.1|60574_60991_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_172977935.1|61029_61242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139346330.1|61808_62846_+	murein L,D-transpeptidase	NA	NA	NA	NA	NA
WP_172977936.1|62847_63015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152338505.1|63017_64112_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_077549206.1|64325_65144_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_077549208.1|65815_66286_-	signal peptidase II	NA	NA	NA	NA	NA
WP_077549209.1|66503_67052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139346331.1|67414_67930_+	transglutaminase-like cysteine peptidase	NA	NA	NA	NA	NA
WP_139346328.1|67933_68890_-	cation diffusion facilitator family transporter	NA	A0A1V0SED0	Indivirus	27.7	4.5e-08
WP_077549212.1|68905_69562_-	DsbA family protein	NA	NA	NA	NA	NA
69368:69384	attR	ATCGAAGAATTCGACGA	NA	NA	NA	NA
WP_077549213.1|69558_69996_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_077549214.1|70200_70821_+	SCO family protein	NA	NA	NA	NA	NA
WP_077549215.1|70960_71644_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_077549216.1|71640_72378_+	DUF1624 domain-containing protein	NA	NA	NA	NA	NA
WP_077549222.1|72814_74575_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_172977937.1|75204_75834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077549218.1|75982_76501_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077549223.1|77826_78681_+	hypothetical protein	NA	A0A2K9V3V9	Faecalibacterium_phage	29.8	1.7e-19
WP_077549220.1|79226_79532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152338409.1|79919_81116_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	47.5	4.7e-95
WP_052642687.1|81727_82441_-|transposase	IS6-like element ISRsp9 family transposase	transposase	A0A077SL39	Escherichia_phage	34.9	2.7e-18
WP_077546293.1|82633_83023_+	MerR family DNA-binding protein	NA	NA	NA	NA	NA
WP_077546312.1|83811_84516_+	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_077546291.1|84528_85023_+	metal-binding protein	NA	NA	NA	NA	NA
WP_077546290.1|85155_85638_+	cytochrome c	NA	NA	NA	NA	NA
WP_172977938.1|85679_87023_+	HAD-IC family P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.9	1.4e-44
WP_077546288.1|87321_88146_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_152338506.1|88584_88995_+|transposase	transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	54.5	3.4e-05
>prophage 1
NZ_LR723673	Rhizobium flavum strain YW14 plasmid 4	150934	8419	66295	150934	transposase	Corynebacterium_phage(21.43%)	49	NA	NA
WP_172977944.1|8419_9362_+|transposase	IS630 family transposase	transposase	A0A2P0VP61	Tetraselmis_virus	27.3	1.1e-14
WP_077548354.1|9552_11118_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	26.4	5.6e-32
WP_077548355.1|11181_12618_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_077548356.1|13251_13617_-	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_036588671.1|13999_14485_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003537140.1|15118_15316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077548608.1|15548_16262_-	ParA family protein	NA	A0A2H4JGZ2	uncultured_Caudovirales_phage	28.9	1.6e-10
WP_077548358.1|16943_17345_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
WP_077548359.1|17348_20264_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
WP_077548360.1|20270_20480_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152338517.1|20959_23935_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	37.8	1.1e-188
WP_152338518.1|24014_24695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077548365.1|24691_26212_+	AMP-binding protein	NA	A0A1V0SBX8	Catovirus	27.5	7.7e-18
WP_152338409.1|26605_27802_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	47.5	4.7e-95
WP_139346112.1|28038_28272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139346111.1|28453_28909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077546346.1|30579_31704_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	41.4	8.7e-11
WP_152338409.1|31767_32964_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	47.5	4.7e-95
WP_172977945.1|33800_34727_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	31.9	3.6e-10
WP_077549895.1|35327_36011_+	CerR family C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_077549896.1|36117_36438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139346391.1|36897_37206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077549898.1|37304_38921_+	AarF/ABC1/UbiB kinase family protein	NA	A0A0P0CRP3	Ostreococcus_lucimarinus_virus	28.5	3.9e-36
WP_172977946.1|38873_39317_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
WP_077549904.1|39872_40934_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_152338519.1|41177_41996_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_077549901.1|41992_42979_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_139346392.1|43292_43469_+	DUF2934 domain-containing protein	NA	NA	NA	NA	NA
WP_077549903.1|44188_44773_-	acyloxyacyl hydrolase	NA	NA	NA	NA	NA
WP_077548973.1|48446_49373_+	DUF1738 domain-containing protein	NA	A0A1V0EEV1	Caulobacter_phage	47.3	5.4e-75
WP_077548975.1|49518_49761_+	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA	NA
WP_077548976.1|49760_50165_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_172977947.1|50521_50668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064334949.1|50965_51283_+	DUF736 domain-containing protein	NA	NA	NA	NA	NA
WP_172977948.1|51601_51772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077548978.1|51810_52089_-	HU family DNA-binding protein	NA	B5TA87	Burkholderia_phage	43.7	4.8e-11
WP_077549026.1|52229_52487_-	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_077548979.1|52736_54659_-	Ti-type conjugative transfer system protein TraG	NA	NA	NA	NA	NA
WP_077548980.1|54651_54867_-	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_003501352.1|54871_55168_-	TraC family protein	NA	NA	NA	NA	NA
WP_077548981.1|55416_58719_+	Ti-type conjugative transfer relaxase TraA	NA	V5UQN3	Mycobacterium_phage	27.8	1.8e-16
WP_003501349.1|58715_59246_+	conjugative transfer signal peptidase TraF	NA	NA	NA	NA	NA
WP_077548982.1|59166_60414_+	conjugal transfer protein TraB	NA	NA	NA	NA	NA
WP_077548983.1|60427_61057_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
WP_077548984.1|61377_61686_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_077548985.1|61689_62394_-	transcriptional regulator TraR	NA	NA	NA	NA	NA
WP_152338409.1|62555_63752_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	47.5	4.7e-95
WP_077546249.1|64130_64868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077546248.1|64873_66295_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
