The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LR698984	Clostridioides difficile isolate MGYG-HGUT-02369 chromosome 1	4190038	174603	190789	4190038		Synechococcus_phage(23.08%)	14	NA	NA
WP_009888043.1|174603_175116_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	2.3e-83
WP_003425290.1|175565_176042_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
WP_003420966.1|176047_176746_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
WP_003425288.1|176757_178125_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
WP_003425286.1|178118_179195_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
WP_003436064.1|179188_179782_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
WP_009892582.1|179774_181307_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
WP_009888045.1|181317_182568_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_009888046.1|182592_186399_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.1	3.0e-31
WP_009888047.1|186604_187477_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	3.8e-14
WP_009888048.1|187585_188467_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	61.9	8.2e-97
WP_009888049.1|188503_189061_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.3e-47
WP_009888050.1|189098_190082_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.9	9.2e-81
WP_009888051.1|190120_190789_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	47.7	4.1e-24
>prophage 2
NZ_LR698984	Clostridioides difficile isolate MGYG-HGUT-02369 chromosome 1	4190038	1282305	1354891	4190038	portal,protease,tail,integrase,plate,tRNA	Clostridium_phage(44.44%)	69	1276710:1276728	1319858:1319876
1276710:1276728	attL	ATGAAAAAAAATTTAGAAG	NA	NA	NA	NA
WP_009889097.1|1282305_1283211_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_009889098.1|1283341_1284271_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_003419491.1|1284374_1284632_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_009889099.1|1284871_1285717_+	DegV family protein	NA	NA	NA	NA	NA
WP_003438316.1|1285841_1287953_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003438319.1|1288218_1288962_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_009889101.1|1289119_1290367_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	35.1	6.6e-52
WP_003419503.1|1290401_1290647_+	YlmC/YmxH family sporulation protein	NA	NA	NA	NA	NA
WP_009889103.1|1290656_1291880_+	aspartate kinase	NA	NA	NA	NA	NA
WP_003428224.1|1291992_1292727_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	NA	NA	NA	NA
WP_009889104.1|1292849_1295261_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
WP_009889105.1|1295263_1296322_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_009892976.1|1296315_1297650_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_009889106.1|1297636_1298179_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003428218.1|1298466_1299513_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
WP_003428216.1|1299688_1301230_+	ribonuclease Y	NA	NA	NA	NA	NA
WP_003438344.1|1301864_1303646_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_009889108.1|1303727_1304258_-	signal peptidase I	NA	NA	NA	NA	NA
WP_009889109.1|1304297_1305122_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_009889110.1|1305378_1306287_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_009889111.1|1306430_1307876_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
WP_003419561.1|1308186_1308639_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009889112.1|1309051_1310629_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_009892977.1|1310787_1311540_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011861180.1|1311678_1313019_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
WP_003438357.1|1313130_1314327_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_009889113.1|1314711_1315662_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_003438367.1|1315822_1316575_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
WP_009889114.1|1316666_1317443_-	exonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_003428202.1|1317757_1319656_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_003428201.1|1319783_1320905_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
1319858:1319876	attR	CTTCTAAATTTTTTTTCAT	NA	NA	NA	NA
WP_009889116.1|1321103_1321436_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012816112.1|1321422_1322481_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_009889118.1|1322473_1323544_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_003428196.1|1323645_1324182_+	lipoprotein	NA	NA	NA	NA	NA
WP_009889121.1|1324298_1325006_+	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.0	3.6e-55
WP_009889122.1|1325007_1325724_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_009889124.1|1325725_1326484_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_009889126.1|1326627_1328016_+	two-component system sensor histidine kinase	NA	NA	NA	NA	NA
WP_003428191.1|1328091_1328913_-	pyridoxamine kinase	NA	NA	NA	NA	NA
WP_021361422.1|1329148_1330318_+	amidase domain-containing protein	NA	NA	NA	NA	NA
WP_003419624.1|1330500_1330701_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
WP_009889129.1|1331121_1331550_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_009889131.1|1331692_1332448_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_003428186.1|1333148_1333655_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
WP_003428185.1|1333736_1334057_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
WP_003419641.1|1334225_1334423_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009889133.1|1334527_1334968_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
WP_009889135.1|1335216_1335660_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	7.6e-19
WP_009889137.1|1335664_1336729_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
WP_003419646.1|1336742_1337171_+|tail	phage tail tube protein	tail	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
WP_009889139.1|1337284_1337731_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
WP_003419648.1|1337757_1337925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889141.1|1337924_1340378_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	61.0	6.1e-17
WP_009889143.1|1340377_1340800_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	70.4	2.2e-52
WP_009889145.1|1341081_1342611_+	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
WP_003438447.1|1342626_1342953_+	DUF2577 family protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
WP_003428161.1|1342952_1343381_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
WP_009889148.1|1343373_1344426_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFP3	Clostridium_phage	71.3	9.3e-140
WP_009889149.1|1344422_1345121_+	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	3.3e-48
WP_009889153.1|1345121_1346108_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
WP_009892995.1|1346129_1351307_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	28.3	8.2e-88
WP_009889155.1|1351323_1351677_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	4.2e-12
WP_003419670.1|1351939_1352200_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
WP_003419674.1|1352424_1352880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438466.1|1353107_1353527_-	helix-turn-helix transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
WP_003428146.1|1353825_1354035_+	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
WP_009889160.1|1354066_1354276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889162.1|1354492_1354891_-	helix-turn-helix domain-containing protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 3
NZ_LR698984	Clostridioides difficile isolate MGYG-HGUT-02369 chromosome 1	4190038	1437583	1446128	4190038		Pandoravirus(33.33%)	10	NA	NA
WP_009889249.1|1437583_1438168_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	4.2e-57
WP_009889251.1|1438169_1439519_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.2	2.9e-37
WP_003438634.1|1439508_1440252_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_009889253.1|1440285_1440987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429416.1|1441012_1441585_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
WP_009893060.1|1441650_1442442_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	28.6	1.8e-23
WP_009889257.1|1442452_1442818_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_009889259.1|1442810_1443317_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_009893063.1|1443297_1444083_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.0e-13
WP_009893065.1|1444337_1446128_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.8	5.6e-52
>prophage 4
NZ_LR698984	Clostridioides difficile isolate MGYG-HGUT-02369 chromosome 1	4190038	1573543	1628674	4190038	capsid,portal,tail,holin,terminase,integrase,plate	Clostridium_phage(78.57%)	67	1567546:1567561	1576766:1576781
1567546:1567561	attL	ATATAAAAGAGCAGAT	NA	NA	NA	NA
WP_003429803.1|1573543_1574674_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
WP_009888800.1|1574752_1575460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888801.1|1575472_1576342_-	HipA domain-containing protein	NA	NA	NA	NA	NA
WP_003429804.1|1576961_1577468_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
1576766:1576781	attR	ATATAAAAGAGCAGAT	NA	NA	NA	NA
WP_009893126.1|1577543_1578092_-	helix-turn-helix domain-containing protein	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
WP_009888806.1|1578103_1578445_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
WP_009893129.1|1578621_1578825_+	helix-turn-helix domain-containing protein	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
WP_009888810.1|1578872_1579682_+	phage antirepressor KilAC domain-containing protein	NA	A0A0A8WIE3	Clostridium_phage	97.4	1.0e-146
WP_009888812.1|1579728_1579938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003433505.1|1579947_1580322_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
WP_009888813.1|1580397_1580595_+	helix-turn-helix transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	2.9e-26
WP_009888815.1|1580625_1581018_+	helix-turn-helix domain-containing protein	NA	A0A0A8WHS2	Clostridium_phage	93.0	9.6e-58
WP_003429817.1|1580998_1581148_+	hypothetical protein	NA	A0A0A8WIF8	Clostridium_phage	89.4	4.2e-14
WP_003433513.1|1581218_1581656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888818.1|1581667_1582834_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
WP_009888819.1|1582848_1583184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429822.1|1583236_1583809_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA	NA
WP_003433516.1|1583831_1584404_+	DUF2815 family protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
WP_009888821.1|1584403_1586362_+	DNA polymerase	NA	A0A0A7RTL3	Clostridium_phage	69.1	7.8e-265
WP_009888822.1|1586373_1588791_+	virulence-associated protein E	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
WP_003433522.1|1589072_1589399_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
WP_009888823.1|1589347_1590718_+	DEAD/DEAH box helicase	NA	A0A1S7FYY5	Listeria_phage	60.0	8.4e-157
WP_009888824.1|1590741_1590879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888825.1|1590871_1591351_+	sigma-70 region 4 domain-containing protein	NA	I2E8Y5	Clostridium_phage	51.0	4.4e-36
WP_009888827.1|1592377_1593352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429834.1|1593372_1593882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888829.1|1593951_1594644_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	97.0	7.0e-120
WP_012816148.1|1594621_1595875_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	1.2e-245
WP_009888831.1|1595880_1597323_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	97.7	3.0e-274
WP_009893134.1|1597312_1598848_+|capsid	minor capsid protein	capsid	X5JAI9	Clostridium_phage	71.9	2.5e-194
WP_009888832.1|1598849_1599098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888833.1|1599165_1599729_+	phage scaffolding protein	NA	A0A0A8WFU8	Clostridium_phage	93.6	6.0e-85
WP_009888834.1|1599740_1600631_+	hypothetical protein	NA	X5J9Z5	Clostridium_phage	99.3	1.4e-165
WP_009888835.1|1600649_1600883_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	93.5	4.6e-31
WP_009888836.1|1600892_1601294_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
WP_003433540.1|1601287_1601635_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
WP_009893135.1|1601634_1601925_+	HK97 gp10 family phage protein	NA	A0A0A8WFV8	Clostridium_phage	96.7	4.1e-45
WP_009888838.1|1602034_1602841_+	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
WP_009888839.1|1603189_1603627_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
WP_009888840.1|1603619_1603796_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	93.1	1.1e-21
WP_009893136.1|1603796_1605107_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	X5JAJ1	Clostridium_phage	92.7	8.1e-234
WP_009888842.1|1605123_1605594_+|tail	phage tail tube protein	tail	A0A0A8WJ62	Clostridium_phage	81.3	1.3e-69
WP_009888843.1|1605652_1606480_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	48.3	1.8e-45
WP_003429853.1|1606551_1606992_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
WP_003429855.1|1607332_1607494_+	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
WP_003429858.1|1608830_1609019_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	96.8	2.2e-23
WP_009888845.1|1609137_1610004_+	hypothetical protein	NA	X5JAW1	Clostridium_phage	80.1	3.2e-130
WP_009888847.1|1610868_1611396_+	DUF4352 domain-containing protein	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
WP_009888848.1|1611533_1612301_+	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	44.4	6.3e-45
WP_009893138.1|1612366_1614739_+	tape measure protein	NA	X5JAB7	Clostridium_phage	41.5	8.8e-146
WP_009888849.1|1614755_1615445_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.8	2.0e-119
WP_009893140.1|1615437_1617330_+	C40 family peptidase	NA	A3QSB3	Clostridium_virus	94.8	0.0e+00
WP_009893142.1|1617343_1617604_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	86.0	1.4e-33
WP_009888851.1|1617608_1618028_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	95.7	1.3e-71
WP_009888852.1|1618028_1619078_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFK0	Clostridium_phage	94.8	1.0e-186
WP_003433579.1|1619070_1619688_+	YmfQ family protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
WP_009888853.1|1619699_1620725_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	87.8	9.1e-140
WP_009893144.1|1620741_1622268_+	hypothetical protein	NA	B6SBV0	Clostridium_virus	60.8	1.3e-89
WP_009889429.1|1622282_1622576_+	hypothetical protein	NA	E2ELK3	Clostridium_phage	77.9	2.2e-38
WP_009889431.1|1622575_1622758_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	95.0	5.5e-24
WP_009889434.1|1622791_1623358_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	77.8	3.6e-37
WP_009889435.1|1623388_1623679_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	95.8	6.9e-45
WP_009889440.1|1623682_1623940_+|holin	phage holin family protein	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
WP_003429958.1|1624200_1625064_+	Abi family protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
WP_009889444.1|1625142_1625955_+	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
WP_009893147.1|1626048_1628448_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
WP_003433687.1|1628488_1628674_-	hypothetical protein	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
>prophage 5
NZ_LR698984	Clostridioides difficile isolate MGYG-HGUT-02369 chromosome 1	4190038	2946133	2955086	4190038		Catovirus(50.0%)	8	NA	NA
WP_009891028.1|2946133_2948047_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
WP_003431768.1|2948130_2949222_-	glycosyltransferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
WP_012816333.1|2949227_2950571_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	43.6	3.9e-90
WP_003426498.1|2950548_2951301_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
WP_004454111.1|2951348_2952257_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003426502.1|2952278_2953028_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
WP_009891031.1|2953056_2954232_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_009891033.1|2954246_2955086_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	5.3e-05
>prophage 6
NZ_LR698984	Clostridioides difficile isolate MGYG-HGUT-02369 chromosome 1	4190038	2969191	3062307	4190038	protease,transposase,tRNA,integrase	Streptococcus_phage(54.05%)	80	2987567:2987586	3075105:3075124
WP_009891047.1|2969191_2971603_-|protease	cell wall-binding cysteine protease Cwp84	protease	A0A0A8WJG0	Clostridium_phage	36.0	2.2e-27
WP_009891048.1|2971829_2972225_+	GtrA family protein	NA	NA	NA	NA	NA
WP_009891050.1|2972272_2974108_-	cell wall-binding repeat-containing protein	NA	A0A0A8WJG0	Clostridium_phage	33.6	2.9e-27
WP_009891052.1|2974140_2974848_-	PIG-L family deacetylase	NA	NA	NA	NA	NA
WP_009891054.1|2974954_2976826_-	cell wall-binding protein Cwp2	NA	NA	NA	NA	NA
WP_009891056.1|2977240_2979586_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_100882486.1|2979821_2982098_-	S-layer protein SlpA	NA	A0A0A8WJG0	Clostridium_phage	28.7	2.6e-17
WP_009893729.1|2982323_2983913_-	cell wall-binding protein Cwp12	NA	A0A2R2ZGK6	Clostridioides_phage	44.3	2.1e-66
WP_012816337.1|2984131_2985733_-	cell wall-binding protein Cwp11	NA	A0A2R2ZGK6	Clostridioides_phage	39.6	2.9e-60
WP_009891063.1|2986099_2987980_-	cell wall-binding protein Cwp10	NA	NA	NA	NA	NA
2987567:2987586	attL	AGATTTTTTTACAGATATTC	NA	NA	NA	NA
WP_009893730.1|2988189_2994153_-	fibronectin type III domain-containing protein	NA	NA	NA	NA	NA
WP_009891065.1|2994533_2995937_-	cell wall-binding protein Cwp9	NA	A0A2R2ZGK6	Clostridioides_phage	44.6	3.5e-65
WP_009891066.1|2996398_2998294_-	cell wall-binding protein Cwp8	NA	A0A0A8WJG0	Clostridium_phage	28.4	9.3e-05
WP_009891067.1|2998919_2999063_-	six-cysteine peptide SCIFF	NA	NA	NA	NA	NA
WP_003422821.1|2999128_2999491_-	TIGR04086 family membrane protein	NA	NA	NA	NA	NA
WP_003426573.1|2999548_2999842_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_009891071.1|2999975_3001097_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	48.2	4.8e-94
WP_003426576.1|3001175_3001661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009891074.1|3001672_3002698_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003426579.1|3003015_3004035_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	32.9	8.8e-10
WP_009891076.1|3004141_3004744_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_003422814.1|3004736_3005246_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_009891078.1|3005557_3006187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003422812.1|3006389_3006713_+	DUF1540 domain-containing protein	NA	NA	NA	NA	NA
WP_004454079.1|3006980_3007835_+	membrane protein	NA	NA	NA	NA	NA
WP_009893731.1|3008020_3009457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009891081.1|3009527_3010910_-	gluconate permease	NA	NA	NA	NA	NA
WP_003426591.1|3011045_3011951_-	2-hydroxy-3-oxopropionate reductase	NA	NA	NA	NA	NA
WP_009891085.1|3012346_3013012_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012816340.1|3013119_3013668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003426603.1|3013929_3014238_+	hypothetical protein	NA	A0A0A8WF25	Clostridium_phage	57.3	2.9e-25
WP_003426617.1|3014399_3016190_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	33.0	1.2e-54
WP_009891091.1|3016189_3017917_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.0	2.4e-36
WP_003426625.1|3019014_3020127_+	alanine racemase	NA	NA	NA	NA	NA
WP_012816342.1|3020309_3021137_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	36.3	4.7e-38
WP_009891099.1|3021163_3021481_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_003426630.1|3021797_3022307_-	nucleoside recognition protein	NA	NA	NA	NA	NA
WP_003431751.1|3022308_3022956_-	membrane protein	NA	NA	NA	NA	NA
WP_009891103.1|3022969_3024142_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_009891106.1|3024409_3025786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009891108.1|3026036_3026870_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012816344.1|3027729_3028848_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	54.1	1.3e-110
WP_009893735.1|3029700_3030795_-	oxidoreductase	NA	NA	NA	NA	NA
WP_009891114.1|3030796_3031243_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003436139.1|3031548_3032739_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_009891115.1|3032908_3033871_+	EamA family transporter	NA	NA	NA	NA	NA
WP_009891116.1|3033988_3034651_-|protease	zinc metalloprotease Zmp1	protease	NA	NA	NA	NA
WP_003423078.1|3038227_3039673_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	23.9	3.5e-12
WP_003423077.1|3039691_3040093_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002323370.1|3040343_3040592_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003423075.1|3040598_3041015_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	38.0	3.8e-20
WP_003423074.1|3041462_3042341_-	ParA family protein	NA	A0A1X9I765	Streptococcus_phage	97.8	1.2e-148
WP_073459356.1|3042443_3042728_-	topoisomerase DNA-binding C4 zinc finger domain-containing protein	NA	A0A1X9I6W8	Streptococcus_phage	93.0	2.3e-40
WP_002292226.1|3042873_3043611_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_003423072.1|3044128_3044287_-	zeta toxin family protein	NA	NA	NA	NA	NA
WP_000301765.1|3044288_3044561_-	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	100.0	5.0e-05
WP_000527317.1|3044577_3044787_-	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	100.0	6.3e-32
WP_003423065.1|3044979_3045339_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	45.0	2.3e-21
WP_009269672.1|3045446_3045635_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	57.9	8.2e-15
WP_003423063.1|3045839_3046031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003423062.1|3046043_3046688_-	ABC-2 transporter permease	NA	NA	NA	NA	NA
WP_003423060.1|3046684_3047548_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	3.3e-18
WP_003423058.1|3047548_3047926_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003423057.1|3048046_3048958_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	52.8	1.2e-82
WP_003423055.1|3048973_3049981_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	69.9	3.0e-135
WP_003423053.1|3049977_3052173_-	YtxH domain-containing protein	NA	A0A1S5SF30	Streptococcus_phage	68.6	4.4e-176
WP_003423051.1|3052172_3054623_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.1	0.0e+00
WP_004843362.1|3054600_3054999_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	3.2e-48
WP_003423048.1|3055116_3055620_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	61.4	3.4e-55
WP_003423046.1|3055637_3056141_-	antirestriction protein ArdA	NA	NA	NA	NA	NA
WP_003423044.1|3056059_3056356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003423043.1|3056440_3057217_-	helix-turn-helix transcriptional regulator	NA	W6LMS6	Streptococcus_phage	46.6	4.9e-05
WP_002323342.1|3057420_3057642_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
WP_003423040.1|3057642_3057777_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_003423038.1|3057789_3058986_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	62.5	7.3e-149
WP_003423037.1|3059169_3060564_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	66.2	1.9e-177
WP_003423033.1|3060664_3060991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003423032.1|3061006_3061414_-	helix-turn-helix transcriptional regulator	NA	A0A0A7AQV8	Bacillus_phage	42.3	1.2e-05
WP_003423022.1|3061581_3061965_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	57.6	5.2e-32
WP_003417601.1|3061980_3062307_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	51.5	2.0e-24
3075105:3075124	attR	GAATATCTGTAAAAAAATCT	NA	NA	NA	NA
>prophage 7
NZ_LR698984	Clostridioides difficile isolate MGYG-HGUT-02369 chromosome 1	4190038	3804478	3811788	4190038		Clostridioides_phage(100.0%)	7	NA	NA
WP_009888243.1|3804478_3805618_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	91.8	4.9e-195
WP_009888245.1|3805950_3806526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888246.1|3806536_3806725_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	96.8	5.3e-22
WP_009888247.1|3806919_3807477_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	97.8	4.1e-94
WP_012816430.1|3807776_3808520_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	92.3	4.3e-131
WP_012816431.1|3808973_3809516_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	95.0	8.3e-92
WP_009888251.1|3811344_3811788_-	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	82.6	4.3e-62
>prophage 8
NZ_LR698984	Clostridioides difficile isolate MGYG-HGUT-02369 chromosome 1	4190038	3990035	4005458	4190038		Streptococcus_phage(92.31%)	19	NA	NA
WP_009892195.1|3990035_3990359_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	73.5	1.7e-39
WP_009892197.1|3990373_3990757_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	6.3e-38
WP_009892199.1|3990852_3991266_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_009892201.1|3991372_3991831_+	VOC family protein	NA	NA	NA	NA	NA
WP_009892206.1|3991855_3992398_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
WP_012816449.1|3992433_3992961_+	YcxB family protein	NA	NA	NA	NA	NA
WP_012816450.1|3993070_3994465_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	66.8	1.3e-178
WP_009892210.1|3994744_3995866_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.7	1.3e-134
WP_009892216.1|3995872_3996007_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_006354966.1|3996007_3996229_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
WP_009892220.1|3996548_3997187_+	chloramphenicol acetyltransferase CAT	NA	G3CFL0	Escherichia_phage	35.3	7.6e-36
WP_009892222.1|3997263_3997452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892224.1|3997472_3997970_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	41.2	1.3e-27
WP_009892226.1|3997985_3998489_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	47.6	4.4e-39
WP_009892227.1|3998601_3998991_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.8	8.1e-49
WP_009892228.1|3998977_4001410_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
WP_009892229.1|4001409_4003545_+	YtxH domain-containing protein	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.3e-177
WP_009892230.1|4003541_4004549_+	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	67.3	6.4e-130
WP_009892232.1|4004564_4005458_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	53.0	1.6e-79
