assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_901827155.1_ASM90182715v1	NZ_LR594660	Variovorax sp. PBL-H6 plasmid 2	1	138318-138471	1	CRISPRCasFinder	no		DEDDh,cas14i,DinG,c2c9_V-U4,cas3,cas1,cas2,cas8e,cse2gr11,cas7,cas5,cas6e,WYL	Orphan	GTAGGTCCCTCAAAAAGCTCACA	23	0	0	NA	NA	NA	3	3	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4,cas1,cas2,cas8e,cse2gr11,cas7,cas5,cas6e	NA|138aa|up_8|NZ_LR594660.1_130062_130476_-,NA|110aa|up_7|NZ_LR594660.1_130922_131252_-,NA|115aa|up_6|NZ_LR594660.1_131294_131639_-,NA|140aa|up_5|NZ_LR594660.1_131652_132072_-,NA|235aa|up_4|NZ_LR594660.1_132713_133418_-,NA|98aa|up_3|NZ_LR594660.1_133512_133806_-,NA|253aa|up_1|NZ_LR594660.1_135879_136638_+,NA|163aa|down_0|NZ_LR594660.1_139450_139939_+,NA|383aa|down_3|NZ_LR594660.1_140814_141963_+,NA|194aa|down_5|NZ_LR594660.1_143138_143720_+,NA|119aa|down_6|NZ_LR594660.1_143901_144258_+	NA|240aa|up_9|NZ_LR594660.1_129212_129932_-	COG3471, COG3471, Predicted periplasmic/secreted protein [Function unknown]	NA|138aa|up_8|NZ_LR594660.1_130062_130476_-	NA	NA|110aa|up_7|NZ_LR594660.1_130922_131252_-	NA	NA|115aa|up_6|NZ_LR594660.1_131294_131639_-	NA	NA|140aa|up_5|NZ_LR594660.1_131652_132072_-	NA	NA|235aa|up_4|NZ_LR594660.1_132713_133418_-	NA	NA|98aa|up_3|NZ_LR594660.1_133512_133806_-	NA	NA|267aa|up_2|NZ_LR594660.1_134812_135613_+	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|253aa|up_1|NZ_LR594660.1_135879_136638_+	NA	NA|501aa|up_0|NZ_LR594660.1_136634_138137_-	pfam01051, Rep_3, Initiator Replication protein	NA|163aa|down_0|NZ_LR594660.1_139450_139939_+	NA	NA|74aa|down_1|NZ_LR594660.1_140014_140236_-	pfam09926, DUF2158, Uncharacterized small protein (DUF2158)	NA|104aa|down_2|NZ_LR594660.1_140387_140699_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|383aa|down_3|NZ_LR594660.1_140814_141963_+	NA	NA|292aa|down_4|NZ_LR594660.1_142024_142900_-	cd07998, WGR_DNA_ligase, WGR domain of bacterial DNA ligases	NA|194aa|down_5|NZ_LR594660.1_143138_143720_+	NA	NA|119aa|down_6|NZ_LR594660.1_143901_144258_+	NA	NA|365aa|down_7|NZ_LR594660.1_145182_146277_-	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|150aa|down_8|NZ_LR594660.1_146984_147434_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|342aa|down_9|NZ_LR594660.1_147417_148443_-	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC
GCF_901827155.1_ASM90182715v1	NZ_LR594660	Variovorax sp. PBL-H6 plasmid 2	2	138541-138661	2	CRISPRCasFinder	no		DEDDh,cas14i,DinG,c2c9_V-U4,cas3,cas1,cas2,cas8e,cse2gr11,cas7,cas5,cas6e,WYL	Orphan	GTAGGTCCCTCAAAAAGCTCACA	23	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4,cas1,cas2,cas8e,cse2gr11,cas7,cas5,cas6e	NA|138aa|up_8|NZ_LR594660.1_130062_130476_-,NA|110aa|up_7|NZ_LR594660.1_130922_131252_-,NA|115aa|up_6|NZ_LR594660.1_131294_131639_-,NA|140aa|up_5|NZ_LR594660.1_131652_132072_-,NA|235aa|up_4|NZ_LR594660.1_132713_133418_-,NA|98aa|up_3|NZ_LR594660.1_133512_133806_-,NA|253aa|up_1|NZ_LR594660.1_135879_136638_+,NA|163aa|down_0|NZ_LR594660.1_139450_139939_+,NA|383aa|down_3|NZ_LR594660.1_140814_141963_+,NA|194aa|down_5|NZ_LR594660.1_143138_143720_+,NA|119aa|down_6|NZ_LR594660.1_143901_144258_+	NA|240aa|up_9|NZ_LR594660.1_129212_129932_-	COG3471, COG3471, Predicted periplasmic/secreted protein [Function unknown]	NA|138aa|up_8|NZ_LR594660.1_130062_130476_-	NA	NA|110aa|up_7|NZ_LR594660.1_130922_131252_-	NA	NA|115aa|up_6|NZ_LR594660.1_131294_131639_-	NA	NA|140aa|up_5|NZ_LR594660.1_131652_132072_-	NA	NA|235aa|up_4|NZ_LR594660.1_132713_133418_-	NA	NA|98aa|up_3|NZ_LR594660.1_133512_133806_-	NA	NA|267aa|up_2|NZ_LR594660.1_134812_135613_+	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|253aa|up_1|NZ_LR594660.1_135879_136638_+	NA	NA|501aa|up_0|NZ_LR594660.1_136634_138137_-	pfam01051, Rep_3, Initiator Replication protein	NA|163aa|down_0|NZ_LR594660.1_139450_139939_+	NA	NA|74aa|down_1|NZ_LR594660.1_140014_140236_-	pfam09926, DUF2158, Uncharacterized small protein (DUF2158)	NA|104aa|down_2|NZ_LR594660.1_140387_140699_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|383aa|down_3|NZ_LR594660.1_140814_141963_+	NA	NA|292aa|down_4|NZ_LR594660.1_142024_142900_-	cd07998, WGR_DNA_ligase, WGR domain of bacterial DNA ligases	NA|194aa|down_5|NZ_LR594660.1_143138_143720_+	NA	NA|119aa|down_6|NZ_LR594660.1_143901_144258_+	NA	NA|365aa|down_7|NZ_LR594660.1_145182_146277_-	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|150aa|down_8|NZ_LR594660.1_146984_147434_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|342aa|down_9|NZ_LR594660.1_147417_148443_-	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC
GCF_901827155.1_ASM90182715v1	NZ_LR594660	Variovorax sp. PBL-H6 plasmid 2	3	355363-356177	1,1	CRT,PILER-CR	no	cas3,cas1,cas2,cas8e,cse2gr11,cas7,cas5,cas6e	DEDDh,cas14i,DinG,c2c9_V-U4,cas3,cas1,cas2,cas8e,cse2gr11,cas7,cas5,cas6e,WYL	Type I-E	CCCGCGCAAGCGGGGATAGCTC,CCCCCCCGCGCAAGCGGGGATAGCTCG	22,27	0	0	NA	NA	NA:NA	13,3	13	TypeI-E	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4,cas1,cas2,cas8e,cse2gr11,cas7,cas5,cas6e	NA|64aa|up_8|NZ_LR594660.1_333944_334136_-,NA|132aa|up_5|NZ_LR594660.1_336993_337389_-,NA|128aa|down_8|NZ_LR594660.1_365022_365406_+,NA|250aa|down_9|NZ_LR594660.1_365437_366187_+	NA|186aa|up_9|NZ_LR594660.1_333264_333822_+	pfam05014, Nuc_deoxyrib_tr, Nucleoside 2-deoxyribosyltransferase	NA|64aa|up_8|NZ_LR594660.1_333944_334136_-	NA	NA|281aa|up_7|NZ_LR594660.1_334432_335275_+	NF033429, ImuA_translesion, translesion DNA synthesis-associated protein ImuA	NA|455aa|up_6|NZ_LR594660.1_335219_336584_+	cd03468, PolY_like, DNA Polymerase Y-family	NA|132aa|up_5|NZ_LR594660.1_336993_337389_-	NA	NA|3216aa|up_4|NZ_LR594660.1_337495_347143_-	NF012200, choice_anch_D, choice-of-anchor D domain-containing protein	NA|341aa|up_3|NZ_LR594660.1_347452_348475_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|1078aa|up_2|NZ_LR594660.1_348637_351871_+	PRK05672, dnaE2, error-prone DNA polymerase; Validated	NA|100aa|up_1|NZ_LR594660.1_352258_352558_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas3|858aa|up_0|NZ_LR594660.1_352713_355287_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas1|199aa|down_0|NZ_LR594660.1_356301_356898_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|121aa|down_1|NZ_LR594660.1_357121_357484_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas8e|524aa|down_2|NZ_LR594660.1_358660_360232_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|163aa|down_3|NZ_LR594660.1_360228_360717_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|390aa|down_4|NZ_LR594660.1_360771_361941_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|226aa|down_5|NZ_LR594660.1_361950_362628_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|218aa|down_6|NZ_LR594660.1_362633_363287_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	NA|366aa|down_7|NZ_LR594660.1_363838_364936_+	cd16413, DGQHR_domain, DGQHR motif containing domain	NA|128aa|down_8|NZ_LR594660.1_365022_365406_+	NA	NA|250aa|down_9|NZ_LR594660.1_365437_366187_+	NA
GCF_901827155.1_ASM90182715v1	NZ_LR594660	Variovorax sp. PBL-H6 plasmid 2	4	357518-358461	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas1,cas2,cas8e,cse2gr11,cas7,cas5,cas6e	DEDDh,cas14i,DinG,c2c9_V-U4,cas3,cas1,cas2,cas8e,cse2gr11,cas7,cas5,cas6e,WYL	Type I-E	GTCTCCCCCGCGCAAGCGGGGATAGCTCG,GTCTCCCCCGCGCAAGCGGGGATAGCTCG,GTCTCCCCCGCGCAAGCGGGGATAGCTCG	29,29,29	0	0	NA	NA	NA:NA:NA	14,15,14	15	TypeI-E	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4,cas1,cas2,cas8e,cse2gr11,cas7,cas5,cas6e	NA|132aa|up_7|NZ_LR594660.1_336993_337389_-,NA|128aa|down_6|NZ_LR594660.1_365022_365406_+,NA|250aa|down_7|NZ_LR594660.1_365437_366187_+,NA|354aa|down_8|NZ_LR594660.1_366285_367347_+,NA|336aa|down_9|NZ_LR594660.1_367421_368429_-	NA|281aa|up_9|NZ_LR594660.1_334432_335275_+	NF033429, ImuA_translesion, translesion DNA synthesis-associated protein ImuA	NA|455aa|up_8|NZ_LR594660.1_335219_336584_+	cd03468, PolY_like, DNA Polymerase Y-family	NA|132aa|up_7|NZ_LR594660.1_336993_337389_-	NA	NA|3216aa|up_6|NZ_LR594660.1_337495_347143_-	NF012200, choice_anch_D, choice-of-anchor D domain-containing protein	NA|341aa|up_5|NZ_LR594660.1_347452_348475_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|1078aa|up_4|NZ_LR594660.1_348637_351871_+	PRK05672, dnaE2, error-prone DNA polymerase; Validated	NA|100aa|up_3|NZ_LR594660.1_352258_352558_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas3|858aa|up_2|NZ_LR594660.1_352713_355287_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas1|199aa|up_1|NZ_LR594660.1_356301_356898_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|121aa|up_0|NZ_LR594660.1_357121_357484_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas8e|524aa|down_0|NZ_LR594660.1_358660_360232_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|163aa|down_1|NZ_LR594660.1_360228_360717_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|390aa|down_2|NZ_LR594660.1_360771_361941_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|226aa|down_3|NZ_LR594660.1_361950_362628_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|218aa|down_4|NZ_LR594660.1_362633_363287_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	NA|366aa|down_5|NZ_LR594660.1_363838_364936_+	cd16413, DGQHR_domain, DGQHR motif containing domain	NA|128aa|down_6|NZ_LR594660.1_365022_365406_+	NA	NA|250aa|down_7|NZ_LR594660.1_365437_366187_+	NA	NA|354aa|down_8|NZ_LR594660.1_366285_367347_+	NA	NA|336aa|down_9|NZ_LR594660.1_367421_368429_-	NA
GCF_901827155.1_ASM90182715v1	NZ_LR594659	Variovorax sp. PBL-H6 chromosome 1	1	658803-658941	1	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,WYL	Orphan	GCTCTCCCCCAGGTTGGCTCACTTCGTGTAGCCGCCCACCCCC	43	1	5	658846-658898|658846-658898|658846-658898|658846-658898|658846-658898	NZ_LR594659.1_540478-540426|NZ_LR594659.1_540573-540521|NZ_LR594659.1_542924-542872|NZ_LR594659.1_543020-542968|NZ_LR594659.1_543212-543160	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4,cas1,cas2,cas8e,cse2gr11,cas7,cas5,cas6e	NA|69aa|up_1|NZ_LR594659.1_658156_658363_-,NA|33aa|up_0|NZ_LR594659.1_658695_658794_+,NA|105aa|down_8|NZ_LR594659.1_670252_670567_+,NA|83aa|down_9|NZ_LR594659.1_670617_670866_+	NA|355aa|up_9|NZ_LR594659.1_649571_650636_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|310aa|up_8|NZ_LR594659.1_650723_651653_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|268aa|up_7|NZ_LR594659.1_651652_652456_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|653aa|up_6|NZ_LR594659.1_652482_654441_-	cd17641, LC_FACS_bac1, bacterial long-chain fatty acid CoA synthetase	NA|241aa|up_5|NZ_LR594659.1_654525_655248_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|217aa|up_4|NZ_LR594659.1_655252_655903_-	pfam02586, SRAP, SOS response associated peptidase (SRAP)	NA|255aa|up_3|NZ_LR594659.1_656002_656767_+	PRK07023, PRK07023, SDR family oxidoreductase	NA|321aa|up_2|NZ_LR594659.1_656786_657749_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|69aa|up_1|NZ_LR594659.1_658156_658363_-	NA	NA|33aa|up_0|NZ_LR594659.1_658695_658794_+	NA	NA|602aa|down_0|NZ_LR594659.1_659025_660831_+	PRK05482, PRK05482, potassium-transporting ATPase subunit A; Provisional	NA|698aa|down_1|NZ_LR594659.1_660841_662935_+	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB	NA|191aa|down_2|NZ_LR594659.1_662947_663520_+	pfam02669, KdpC, K+-transporting ATPase, c chain	NA|916aa|down_3|NZ_LR594659.1_663572_666320_+	PRK10490, PRK10490, sensor protein KdpD; Provisional	NA|231aa|down_4|NZ_LR594659.1_666363_667056_+	PRK10529, PRK10529, DNA-binding transcriptional activator KdpE; Provisional	NA|256aa|down_5|NZ_LR594659.1_667304_668072_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|220aa|down_6|NZ_LR594659.1_668139_668799_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|456aa|down_7|NZ_LR594659.1_668807_670175_+	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|105aa|down_8|NZ_LR594659.1_670252_670567_+	NA	NA|83aa|down_9|NZ_LR594659.1_670617_670866_+	NA
GCF_901827155.1_ASM90182715v1	NZ_LR594659	Variovorax sp. PBL-H6 chromosome 1	2	2194109-2194193	2	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,WYL	Orphan	GCCGAAGGCGAAGGTACTCCAGTGA	25	1	4	2194134-2194168|2194134-2194168|2194134-2194168|2194134-2194168	NZ_LR594659.1_1045697-1045663|NZ_LR594659.1_2181220-2181186|NZ_LR594659.1_1332418-1332452|NZ_LR594659.1_2796525-2796559	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4,cas1,cas2,cas8e,cse2gr11,cas7,cas5,cas6e	NA,NA|175aa|down_8|NZ_LR594659.1_2203852_2204377_-	NA|396aa|up_9|NZ_LR594659.1_2183533_2184721_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|152aa|up_8|NZ_LR594659.1_2184791_2185247_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|332aa|up_7|NZ_LR594659.1_2185266_2186262_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|363aa|up_6|NZ_LR594659.1_2186323_2187412_-	TIGR02089, Probable_tartrate_dehydrogenase/decarboxylase, tartrate dehydrogenase	NA|311aa|up_5|NZ_LR594659.1_2187520_2188453_+	cd08479, PBP2_CrgA_like_9, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|153aa|up_4|NZ_LR594659.1_2188493_2188952_-	COG2203, FhlA, FOG: GAF domain [Signal transduction mechanisms]	NA|286aa|up_3|NZ_LR594659.1_2189209_2190067_+	cd19138, AKR_YeaE, Escherichia coli YeaE and similar proteins	NA|495aa|up_2|NZ_LR594659.1_2190071_2191556_-	TIGR03173, pbuX, xanthine permease	NA|304aa|up_1|NZ_LR594659.1_2191699_2192611_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|462aa|up_0|NZ_LR594659.1_2192720_2194106_+	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA	NA|324aa|down_0|NZ_LR594659.1_2194614_2195586_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|466aa|down_1|NZ_LR594659.1_2195962_2197360_-	PRK06370, PRK06370, FAD-containing oxidoreductase	NA|367aa|down_2|NZ_LR594659.1_2197619_2198720_+	cd11579, Glyco_tran_WbsX, Glycosyl hydrolase family 99-like domain of WbsX-like glycosyltransferases	NA|411aa|down_3|NZ_LR594659.1_2198761_2199994_-	cd02697, M20_like, M20 Zn-peptidases include exopeptidases	NA|593aa|down_4|NZ_LR594659.1_2199990_2201769_-	PRK13590, PRK13590, putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional	NA|318aa|down_5|NZ_LR594659.1_2201770_2202724_-	TIGR03212, uraD_N-term-dom, putative urate catabolism protein	NA|226aa|down_6|NZ_LR594659.1_2202733_2203411_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|121aa|down_7|NZ_LR594659.1_2203505_2203868_+	pfam00576, Transthyretin, HIUase/Transthyretin family	NA|175aa|down_8|NZ_LR594659.1_2203852_2204377_-	NA	NA|268aa|down_9|NZ_LR594659.1_2204430_2205234_+	TIGR02964, conserved_hypothetical_protein, xanthine dehydrogenase accessory protein XdhC
GCF_901827155.1_ASM90182715v1	NZ_LR594659	Variovorax sp. PBL-H6 chromosome 1	3	5741301-5741391	3	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,WYL	Orphan	CCCCGGTAGGGGGTGGGCGGCTACACGAAG	30	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4,cas1,cas2,cas8e,cse2gr11,cas7,cas5,cas6e	NA|155aa|up_8|NZ_LR594659.1_5733790_5734255_-,NA	NA|118aa|up_9|NZ_LR594659.1_5733415_5733769_-	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV	NA|155aa|up_8|NZ_LR594659.1_5733790_5734255_-	NA	NA|246aa|up_7|NZ_LR594659.1_5734276_5735014_-	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|155aa|up_6|NZ_LR594659.1_5735431_5735896_+	pfam12512, DUF3717, Protein of unknown function (DUF3717)	NA|103aa|up_5|NZ_LR594659.1_5735911_5736220_+	pfam09413, DUF2007, Putative prokaryotic signal transducing protein	NA|187aa|up_4|NZ_LR594659.1_5736230_5736791_-	pfam07152, YaeQ, YaeQ protein	NA|463aa|up_3|NZ_LR594659.1_5736840_5738229_-	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|353aa|up_2|NZ_LR594659.1_5738266_5739325_-	cd07332, M48C_Oma1_like, Peptidase M48C Ste24p, integral membrane endopeptidase	NA|386aa|up_1|NZ_LR594659.1_5739332_5740490_-	pfam05987, DUF898, Bacterial protein of unknown function (DUF898)	NA|204aa|up_0|NZ_LR594659.1_5740596_5741208_+	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|186aa|down_0|NZ_LR594659.1_5741630_5742188_-	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|286aa|down_1|NZ_LR594659.1_5742383_5743241_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|314aa|down_2|NZ_LR594659.1_5743292_5744234_+	TIGR02957, putative_sigma_factor, RNA polymerase sigma-70 factor, TIGR02957 family	NA|348aa|down_3|NZ_LR594659.1_5744241_5745285_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|938aa|down_4|NZ_LR594659.1_5745277_5748091_-	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA|1374aa|down_5|NZ_LR594659.1_5748116_5752238_+	TIGR02099, probable_transmembrane_protein, TIGR02099 family protein	NA|272aa|down_6|NZ_LR594659.1_5752276_5753092_+	cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)	NA|687aa|down_7|NZ_LR594659.1_5753119_5755180_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|209aa|down_8|NZ_LR594659.1_5755208_5755835_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|218aa|down_9|NZ_LR594659.1_5755979_5756633_-	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
GCF_901827155.1_ASM90182715v1	NZ_LR594659	Variovorax sp. PBL-H6 chromosome 1	4	5824548-5824655	4	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,WYL	Orphan	CTGCAGGCCATCAACGAGGAGCTG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4,cas1,cas2,cas8e,cse2gr11,cas7,cas5,cas6e	NA,NA|71aa|down_5|NZ_LR594659.1_5832274_5832487_+	NA|373aa|up_9|NZ_LR594659.1_5812091_5813210_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|380aa|up_8|NZ_LR594659.1_5813206_5814346_+	cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs	NA|319aa|up_7|NZ_LR594659.1_5814327_5815284_+	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family	NA|344aa|up_6|NZ_LR594659.1_5815328_5816360_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|376aa|up_5|NZ_LR594659.1_5816349_5817477_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|373aa|up_4|NZ_LR594659.1_5817464_5818583_+	COG4641, COG4641, Uncharacterized protein conserved in bacteria [Function unknown]	NA|366aa|up_3|NZ_LR594659.1_5818596_5819694_+	COG4641, COG4641, Uncharacterized protein conserved in bacteria [Function unknown]	NA|366aa|up_2|NZ_LR594659.1_5819723_5820821_+	COG4641, COG4641, Uncharacterized protein conserved in bacteria [Function unknown]	NA|275aa|up_1|NZ_LR594659.1_5820817_5821642_+	TIGR04290, hypothetical_protein_OB2597_19321, methyltransferase, Rta_06860 family	NA|168aa|up_0|NZ_LR594659.1_5821685_5822189_+	COG4420, COG4420, Predicted membrane protein [Function unknown]	NA|131aa|down_0|NZ_LR594659.1_5827000_5827393_-	cd04622, CBS_pair_HRP1_like, CBS pair domain found in Hypoxic Response Protein 1 (HRP1) -like proteinds	NA|465aa|down_1|NZ_LR594659.1_5827475_5828870_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|148aa|down_2|NZ_LR594659.1_5828961_5829405_-	cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase	NA|462aa|down_3|NZ_LR594659.1_5829581_5830967_+	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed	NA|307aa|down_4|NZ_LR594659.1_5831149_5832070_+	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism]	NA|71aa|down_5|NZ_LR594659.1_5832274_5832487_+	NA	NA|309aa|down_6|NZ_LR594659.1_5832595_5833522_-	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|369aa|down_7|NZ_LR594659.1_5833921_5835028_+	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase	NA|434aa|down_8|NZ_LR594659.1_5835179_5836481_+	COG1035, FrhB, Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]	NA|362aa|down_9|NZ_LR594659.1_5836577_5837663_-	cd03512, Alkane-hydroxylase, Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases
GCF_901827155.1_ASM90182715v1	NZ_LR594659	Variovorax sp. PBL-H6 chromosome 1	5	5844480-5844600	5	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,WYL	Orphan	CCCCCTCGGGGGGCAGCGAACGAAGTGAGCGTGGGGGCA	39	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4,cas1,cas2,cas8e,cse2gr11,cas7,cas5,cas6e	NA|99aa|up_5|NZ_LR594659.1_5838395_5838692_-,NA|98aa|down_9|NZ_LR594659.1_5858314_5858608_+	NA|369aa|up_9|NZ_LR594659.1_5833921_5835028_+	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase	NA|434aa|up_8|NZ_LR594659.1_5835179_5836481_+	COG1035, FrhB, Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]	NA|362aa|up_7|NZ_LR594659.1_5836577_5837663_-	cd03512, Alkane-hydroxylase, Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases	NA|241aa|up_6|NZ_LR594659.1_5837659_5838382_-	pfam03472, Autoind_bind, Autoinducer binding domain	NA|99aa|up_5|NZ_LR594659.1_5838395_5838692_-	NA	NA|121aa|up_4|NZ_LR594659.1_5839180_5839543_-	PRK05582, PRK05582, type I DNA topoisomerase	NA|341aa|up_3|NZ_LR594659.1_5839804_5840827_-	PRK09121, PRK09121, methionine synthase	NA|235aa|up_2|NZ_LR594659.1_5840872_5841577_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|669aa|up_1|NZ_LR594659.1_5841569_5843576_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|289aa|up_0|NZ_LR594659.1_5843576_5844443_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|406aa|down_0|NZ_LR594659.1_5844608_5845826_-	cd06338, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|322aa|down_1|NZ_LR594659.1_5845927_5846893_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|379aa|down_2|NZ_LR594659.1_5846919_5848056_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|269aa|down_3|NZ_LR594659.1_5848052_5848859_-	PRK06224, PRK06224, citryl-CoA lyase	NA|295aa|down_4|NZ_LR594659.1_5848898_5849783_-	cd03461, 1,2-HQD, Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates	NA|303aa|down_5|NZ_LR594659.1_5849892_5850801_+	PRK11242, PRK11242, DNA-binding transcriptional regulator CynR; Provisional	NA|167aa|down_6|NZ_LR594659.1_5850983_5851484_-	pfam05818, TraT, Enterobacterial TraT complement resistance protein	NA|332aa|down_7|NZ_LR594659.1_5852028_5853024_+	pfam00582, Usp, Universal stress protein family	NA|1686aa|down_8|NZ_LR594659.1_5853184_5858242_+	PRK12467, PRK12467, peptide synthase; Provisional	NA|98aa|down_9|NZ_LR594659.1_5858314_5858608_+	NA
GCF_901827155.1_ASM90182715v1	NZ_LR594659	Variovorax sp. PBL-H6 chromosome 1	6	5946046-5946173	6	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3,WYL	Orphan	GGTGCTGGTGCTGGTGCTGGTGCTGGTGC	29	1	27	5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144|5946126-5946144	NZ_LR594659.1_1865316-1865298|NZ_LR594659.1_1865322-1865304|NZ_LR594659.1_1865328-1865310|NZ_LR594659.1_4131415-4131397|NZ_LR594659.1_2493684-2493702|NZ_LR594659.1_5946156-5946174|NZ_LR594659.1_3627844-3627826|NZ_LR594659.1_5943284-5943302|NZ_LR594659.1_5943533-5943551|NZ_LR594659.1_5946162-5946180|NZ_LR594659.1_247328-247310|NZ_LR594659.1_1238879-1238861|NZ_LR594659.1_2303917-2303899|NZ_LR594659.1_2324010-2323992|NZ_LR594659.1_3222049-3222031|NZ_LR594659.1_784744-784762|NZ_LR594659.1_1074534-1074552|NZ_LR594659.1_2296989-2297007|NZ_LR594659.1_2767312-2767330|NZ_LR594659.1_3252925-3252943|NZ_LR594659.1_4538814-4538832|NZ_LR594659.1_4935924-4935942|NZ_LR594659.1_5919873-5919891|NZ_LR594659.1_5943515-5943533|NZ_LR594659.1_5943521-5943539|NZ_LR594659.1_5943539-5943557|NZ_LR594659.1_5982632-5982650	NA	2	2	Orphan	csa3,DEDDh,DinG,cas3,WYL,cas14i,c2c9_V-U4,cas1,cas2,cas8e,cse2gr11,cas7,cas5,cas6e	NA|596aa|up_0|NZ_LR594659.1_5944220_5946008_-,NA	NA|247aa|up_9|NZ_LR594659.1_5929467_5930208_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|1101aa|up_8|NZ_LR594659.1_5930204_5933507_-	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|507aa|up_7|NZ_LR594659.1_5933642_5935163_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|201aa|up_6|NZ_LR594659.1_5935189_5935792_-	cd16961, RMtype1_S_TRD-CR_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR) and similar domains	NA|331aa|up_5|NZ_LR594659.1_5935901_5936894_+	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	NA|335aa|up_4|NZ_LR594659.1_5936975_5937980_-	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|680aa|up_3|NZ_LR594659.1_5938020_5940060_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|131aa|up_2|NZ_LR594659.1_5940164_5940557_+	pfam02675, AdoMet_dc, S-adenosylmethionine decarboxylase	NA|231aa|up_1|NZ_LR594659.1_5940568_5941261_+	cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family	NA|596aa|up_0|NZ_LR594659.1_5944220_5946008_-	NA	NA|689aa|down_0|NZ_LR594659.1_5947095_5949162_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|462aa|down_1|NZ_LR594659.1_5949299_5950685_+	PRK10879, PRK10879, proline aminopeptidase P II; Provisional	NA|199aa|down_2|NZ_LR594659.1_5950681_5951278_-	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|123aa|down_3|NZ_LR594659.1_5951277_5951646_-	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system	NA|528aa|down_4|NZ_LR594659.1_5951697_5953281_-	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	NA|522aa|down_5|NZ_LR594659.1_5953277_5954843_-	PRK03612, PRK03612, polyamine aminopropyltransferase	NA|74aa|down_6|NZ_LR594659.1_5954859_5955081_-	pfam03994, DUF350, Domain of Unknown Function (DUF350)	NA|493aa|down_7|NZ_LR594659.1_5955103_5956582_-	pfam13785, DUF4178, Domain of unknown function (DUF4178)	NA|355aa|down_8|NZ_LR594659.1_5956657_5957722_-	COG4260, COG4260, Membrane protease subunit, stomatin/prohibitin family [Amino acid    transport and metabolism]	NA|780aa|down_9|NZ_LR594659.1_5957886_5960226_+	PRK12862, PRK12862, malic enzyme; Reviewed
