assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_901544215.1_42880_F01	NZ_LR594048	Streptococcus dysgalactiae subsp. equisimilis strain NCTC11556 chromosome 1	1	862329-862452	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	Orphan	CAACACCCGAAGGCCAATCAACGCCTGAAGTTGACGAAGT	40	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	NA,NA|57aa|down_5|NZ_LR594048.1_868715_868886_+,NA|248aa|down_8|NZ_LR594048.1_870981_871725_+	NA|675aa|up_9|NZ_LR594048.1_844984_847009_-	cd07412, MPP_YhcR_N, Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain	NA|327aa|up_8|NZ_LR594048.1_847272_848253_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|574aa|up_7|NZ_LR594048.1_848558_850280_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|581aa|up_6|NZ_LR594048.1_850281_852024_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|293aa|up_5|NZ_LR594048.1_852228_853107_+	COG1577, ERG12, Mevalonate kinase [Lipid metabolism]	NA|315aa|up_4|NZ_LR594048.1_853088_854033_+	TIGR01240, Diphosphomevalonate_decarboxylase, diphosphomevalonate decarboxylase	NA|338aa|up_3|NZ_LR594048.1_854025_855039_+	COG1577, ERG12, Mevalonate kinase [Lipid metabolism]	NA|331aa|up_2|NZ_LR594048.1_855025_856018_+	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|509aa|up_1|NZ_LR594048.1_856163_857690_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|1295aa|up_0|NZ_LR594048.1_858047_861932_+	NF033187, internalin_J, class 1 internalin InlJ	NA|506aa|down_0|NZ_LR594048.1_862916_864434_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|426aa|down_1|NZ_LR594048.1_864621_865899_-	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|394aa|down_2|NZ_LR594048.1_865879_867061_-	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|280aa|down_3|NZ_LR594048.1_867278_868118_+	PRK01827, thyA, thymidylate synthase; Reviewed	NA|166aa|down_4|NZ_LR594048.1_868198_868696_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|57aa|down_5|NZ_LR594048.1_868715_868886_+	NA	NA|410aa|down_6|NZ_LR594048.1_868999_870229_+	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|200aa|down_7|NZ_LR594048.1_870238_870838_+	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|248aa|down_8|NZ_LR594048.1_870981_871725_+	NA	NA|700aa|down_9|NZ_LR594048.1_871781_873881_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
GCF_901544215.1_42880_F01	NZ_LR594048	Streptococcus dysgalactiae subsp. equisimilis strain NCTC11556 chromosome 1	2	1219380-1220208	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csa3,csn2,cas2,cas1,cas9	cas3,DEDDh,DinG,csa3,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	Type II-A,Type II-B,Type II-C	GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	36,36,36	1	1	1219813-1219842	NZ_LR594048.1_274297-274326	II-A,II-B:II-A,II-B:II-A,II-B	12,12,11	12	TypeII-A,TypeII-B,TypeII-C	cas3,DEDDh,DinG,csa3,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	NA,NA|214aa|down_8|NZ_LR594048.1_1230108_1230750_-	NA|270aa|up_9|NZ_LR594048.1_1210436_1211246_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_8|NZ_LR594048.1_1211261_1211753_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_7|NZ_LR594048.1_1211772_1212198_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_6|NZ_LR594048.1_1212404_1213424_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|390aa|up_5|NZ_LR594048.1_1213534_1214704_-	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|99aa|up_4|NZ_LR594048.1_1214893_1215190_-	pfam08951, EntA_Immun, Enterocin A Immunity	NA|77aa|up_3|NZ_LR594048.1_1215189_1215420_-	pfam01721, Bacteriocin_II, Class II bacteriocin	NA|146aa|up_2|NZ_LR594048.1_1216290_1216728_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|611aa|up_1|NZ_LR594048.1_1216903_1218736_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|153aa|up_0|NZ_LR594048.1_1218805_1219264_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	csn2|221aa|down_0|NZ_LR594048.1_1220310_1220973_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_LR594048.1_1220962_1221304_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_LR594048.1_1221300_1222170_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1372aa|down_3|NZ_LR594048.1_1222169_1226285_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|210aa|down_4|NZ_LR594048.1_1226761_1227391_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|NZ_LR594048.1_1227390_1228155_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|NZ_LR594048.1_1228154_1228907_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|NZ_LR594048.1_1228916_1230047_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|NZ_LR594048.1_1230108_1230750_-	NA	NA|452aa|down_9|NZ_LR594048.1_1230873_1232229_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_901544215.1_42880_F01	NZ_LR594048	Streptococcus dysgalactiae subsp. equisimilis strain NCTC11556 chromosome 1	3	1580494-1581126	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DEDDh,DinG,csa3,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-C,Type I-U	ATTTCAATCCACTCACCCGCGAAGGGTGAGAC,ATTTCAATCCACTCACCCGCGAAGGGTGAGAC,ATTTCAATCCACTCACCCGCGAAGGGTGAGAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	9,9,8	9	TypeI-U?,TypeI-C,TypeI-U	cas3,DEDDh,DinG,csa3,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	NA,NA	NA|158aa|up_9|NZ_LR594048.1_1570578_1571052_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|239aa|up_8|NZ_LR594048.1_1571229_1571946_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|360aa|up_7|NZ_LR594048.1_1571959_1573039_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_6|NZ_LR594048.1_1573111_1574845_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_5|NZ_LR594048.1_1574841_1575582_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_4|NZ_LR594048.1_1575669_1576776_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_3|NZ_LR594048.1_1576818_1577442_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_2|NZ_LR594048.1_1577454_1578165_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|311aa|up_1|NZ_LR594048.1_1578384_1579317_-	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|320aa|up_0|NZ_LR594048.1_1579408_1580368_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	cas2|98aa|down_0|NZ_LR594048.1_1581274_1581568_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|NZ_LR594048.1_1581578_1582604_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|NZ_LR594048.1_1582600_1583275_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|NZ_LR594048.1_1583276_1584125_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_4|NZ_LR594048.1_1584129_1586025_-	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|243aa|down_5|NZ_LR594048.1_1586024_1586753_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|809aa|down_6|NZ_LR594048.1_1587015_1589442_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_7|NZ_LR594048.1_1589708_1592357_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_8|NZ_LR594048.1_1592358_1592922_-	pfam13238, AAA_18, AAA domain	NA|197aa|down_9|NZ_LR594048.1_1592918_1593509_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
GCF_901544215.1_42880_F01	NZ_LR594048	Streptococcus dysgalactiae subsp. equisimilis strain NCTC11556 chromosome 1	4	1944828-1945074	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	Orphan	CTTTGTTTTCAGCATCAATTTTTGCTTT	28	0	0	NA	NA	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	NA|86aa|up_9|NZ_LR594048.1_1931845_1932103_-,NA|650aa|up_8|NZ_LR594048.1_1932122_1934072_-,NA|216aa|up_7|NZ_LR594048.1_1934081_1934729_-,NA|86aa|up_1|NZ_LR594048.1_1941550_1941808_-,NA|86aa|down_7|NZ_LR594048.1_1958624_1958882_-,NA|153aa|down_9|NZ_LR594048.1_1961427_1961886_-	NA|86aa|up_9|NZ_LR594048.1_1931845_1932103_-	NA	NA|650aa|up_8|NZ_LR594048.1_1932122_1934072_-	NA	NA|216aa|up_7|NZ_LR594048.1_1934081_1934729_-	NA	NA|102aa|up_6|NZ_LR594048.1_1934728_1935034_-	pfam17332, pXO2-11, Uncharacterized protein pXO2-11	NA|94aa|up_5|NZ_LR594048.1_1935269_1935551_-	cd17748, BRCT_DNA_ligase_like, BRCT domain of bacterial NAD-dependent DNA ligase (LigA) and similar proteins	NA|715aa|up_4|NZ_LR594048.1_1935559_1937704_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|162aa|up_3|NZ_LR594048.1_1937823_1938309_-	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site	NA|1050aa|up_2|NZ_LR594048.1_1938408_1941558_-	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG	NA|86aa|up_1|NZ_LR594048.1_1941550_1941808_-	NA	NA|144aa|up_0|NZ_LR594048.1_1942035_1942467_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|244aa|down_0|NZ_LR594048.1_1945495_1946227_-	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL	NA|754aa|down_1|NZ_LR594048.1_1946303_1948565_-	cd02549, Peptidase_C39A, A sub-family of peptidase family C39	NA|361aa|down_2|NZ_LR594048.1_1948579_1949662_-	cd16427, TraM-like, C-terminal domain of transfer protein TraM	NA|116aa|down_3|NZ_LR594048.1_1949672_1950020_-	pfam04956, TrbC, TrbC/VIRB2 family	NA|611aa|down_4|NZ_LR594048.1_1950110_1951943_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|583aa|down_5|NZ_LR594048.1_1951944_1953693_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|1582aa|down_6|NZ_LR594048.1_1953875_1958621_-	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	NA|86aa|down_7|NZ_LR594048.1_1958624_1958882_-	NA	NA|789aa|down_8|NZ_LR594048.1_1959007_1961374_-	pfam18555, MobL, MobL relaxases	NA|153aa|down_9|NZ_LR594048.1_1961427_1961886_-	NA
GCF_901544215.1_42880_F01	NZ_LR594048	Streptococcus dysgalactiae subsp. equisimilis strain NCTC11556 chromosome 1	5	2153089-2153185	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	NA|58aa|up_9|NZ_LR594048.1_2148260_2148434_-,NA|538aa|up_8|NZ_LR594048.1_2148720_2150334_-,NA|174aa|up_7|NZ_LR594048.1_2150323_2150845_-,NA|123aa|up_6|NZ_LR594048.1_2150854_2151223_-,NA|66aa|up_5|NZ_LR594048.1_2151131_2151329_-,NA|47aa|up_4|NZ_LR594048.1_2151309_2151450_-,NA|90aa|up_3|NZ_LR594048.1_2151446_2151716_-,NA|81aa|up_2|NZ_LR594048.1_2152000_2152243_-,NA|175aa|down_1|NZ_LR594048.1_2154002_2154527_+	NA|58aa|up_9|NZ_LR594048.1_2148260_2148434_-	NA	NA|538aa|up_8|NZ_LR594048.1_2148720_2150334_-	NA	NA|174aa|up_7|NZ_LR594048.1_2150323_2150845_-	NA	NA|123aa|up_6|NZ_LR594048.1_2150854_2151223_-	NA	NA|66aa|up_5|NZ_LR594048.1_2151131_2151329_-	NA	NA|47aa|up_4|NZ_LR594048.1_2151309_2151450_-	NA	NA|90aa|up_3|NZ_LR594048.1_2151446_2151716_-	NA	NA|81aa|up_2|NZ_LR594048.1_2152000_2152243_-	NA	NA|188aa|up_1|NZ_LR594048.1_2152305_2152869_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|NZ_LR594048.1_2152884_2153073_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|NZ_LR594048.1_2153241_2153685_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|175aa|down_1|NZ_LR594048.1_2154002_2154527_+	NA	NA|388aa|down_2|NZ_LR594048.1_2154771_2155935_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_3|NZ_LR594048.1_2156091_2156703_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|156aa|down_4|NZ_LR594048.1_2156891_2157359_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|91aa|down_5|NZ_LR594048.1_2157511_2157784_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|454aa|down_6|NZ_LR594048.1_2157799_2159161_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_7|NZ_LR594048.1_2159196_2159649_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_8|NZ_LR594048.1_2159645_2161622_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|378aa|down_9|NZ_LR594048.1_2161777_2162911_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]
