The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LR595848	Streptococcus pneumoniae strain 4559 isolate 4559 chromosome 1	2150981	4185	64785	2150981	capsid,terminase,integrase,tail,holin,tRNA,transposase	Streptococcus_phage(87.72%)	69	NA	NA
WP_000163928.1|4185_4755_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_000258130.1|4755_8265_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_001234978.1|8322_8589_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_000041909.1|8581_8950_+	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_001224760.1|9069_10338_+	serine hydrolase	NA	NA	NA	NA	NA
WP_001209049.1|10334_11612_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A7K9Y8	Acanthocystis_turfacea_chlorella_virus	24.6	6.7e-07
WP_000892185.1|11615_12158_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	28.9	4.7e-10
WP_000744551.1|12173_14132_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	H8ZJI5	Ostreococcus_tauri_virus	45.8	2.4e-109
WP_000588911.1|14253_14733_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000939545.1|22153_22390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001813655.1|22620_23907_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	37.1	2.7e-72
WP_000876732.1|24148_25297_-|integrase	site-specific integrase	integrase	A0A1S5SEH2	Streptococcus_phage	100.0	1.6e-217
WP_000690123.1|25468_26383_-	HIRAN domain-containing protein	NA	A0A141E191	Streptococcus_phage	100.0	6.4e-137
WP_000136460.1|26394_26778_-	hypothetical protein	NA	A0A141E190	Streptococcus_phage	100.0	1.1e-66
WP_000484469.1|26790_27156_-	helix-turn-helix transcriptional regulator	NA	A0A141E189	Streptococcus_phage	100.0	3.5e-62
WP_001001334.1|27441_27588_+	hypothetical protein	NA	A0A141E188	Streptococcus_phage	100.0	2.5e-19
WP_061367654.1|27580_27784_+	helix-turn-helix transcriptional regulator	NA	A0A141E187	Streptococcus_phage	98.5	4.1e-28
WP_001002347.1|27926_28640_+	ORF6C domain-containing protein	NA	A0A1S5SG33	Streptococcus_phage	100.0	1.8e-134
WP_000370959.1|28651_28909_+	hypothetical protein	NA	A0A1S5SEV6	Streptococcus_phage	100.0	1.2e-43
WP_000462826.1|28994_29315_+	hypothetical protein	NA	A0A1S5SGB9	Streptococcus_phage	100.0	7.4e-48
WP_000391810.1|29330_29630_+	hypothetical protein	NA	A0A1S5SG57	Streptococcus_phage	100.0	2.8e-49
WP_050111337.1|29620_30409_+	phage replisome organizer N-terminal domain-containing protein	NA	E8ZDS7	Streptococcus_phage	99.6	3.2e-145
WP_000511766.1|30396_30555_+	hypothetical protein	NA	A0A1S5SG29	Streptococcus_phage	100.0	2.8e-24
WP_061367657.1|30548_31319_+	ATP-binding protein	NA	A0A141E0P8	Streptococcus_phage	99.6	6.2e-141
WP_000233201.1|31881_32046_+	hypothetical protein	NA	A0A141E182	Streptococcus_phage	100.0	1.4e-23
WP_001105098.1|32035_32245_+	hypothetical protein	NA	A0A1S5SCS9	Streptococcus_phage	100.0	1.5e-28
WP_000969662.1|32216_32534_+	hypothetical protein	NA	A0A1S5SGC8	Streptococcus_phage	100.0	2.0e-58
WP_001041150.1|32535_33045_+	DUF1642 domain-containing protein	NA	A0A141E0P5	Streptococcus_phage	100.0	5.2e-96
WP_139665151.1|33125_33638_+	DUF1642 domain-containing protein	NA	A0A141E0P4	Streptococcus_phage	98.8	4.9e-94
WP_000194861.1|33637_33925_+	hypothetical protein	NA	A0A1S5S9Q8	Streptococcus_phage	100.0	1.7e-48
WP_001277861.1|33924_34113_+	hypothetical protein	NA	A0A1S5S928	Streptococcus_phage	100.0	5.5e-27
WP_088777571.1|34200_34293_+	hypothetical protein	NA	A0A141E175	Streptococcus_phage	100.0	2.5e-09
WP_000005958.1|34285_34465_+	hypothetical protein	NA	A0A141E174	Streptococcus_phage	94.8	4.1e-24
WP_000653364.1|34454_34685_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SG49	Streptococcus_phage	96.1	2.2e-33
WP_001165368.1|34756_35185_+	transcriptional regulator	NA	A0A141E173	Streptococcus_phage	99.3	2.3e-68
WP_000754954.1|35473_36040_+|integrase	site-specific integrase	integrase	A0A141E172	Streptococcus_phage	100.0	9.9e-104
WP_001095652.1|36273_36618_+	HNH endonuclease	NA	E8ZDL6	Streptococcus_phage	100.0	1.2e-64
WP_000172766.1|36755_38060_+	hypothetical protein	NA	A0A126GGJ2	Streptococcus_phage	99.8	2.9e-252
WP_000228948.1|38013_39405_+	hypothetical protein	NA	A0A141E170	Streptococcus_phage	100.0	1.5e-265
WP_050149965.1|39394_39634_+	hypothetical protein	NA	A0A141E169	Streptococcus_phage	98.7	1.5e-42
WP_000528517.1|39686_39917_+	hypothetical protein	NA	A0A1S5SGD0	Streptococcus_phage	100.0	6.7e-35
WP_000101485.1|39967_41380_+|terminase	terminase	terminase	A0A141E168	Streptococcus_phage	99.8	6.8e-279
WP_001288685.1|41461_41926_+	DUF4355 domain-containing protein	NA	A0A141E167	Streptococcus_phage	99.4	1.9e-76
WP_000774646.1|41931_42831_+|capsid	phage major capsid protein	capsid	A0A141E166	Streptococcus_phage	100.0	9.6e-170
WP_001240369.1|42836_43049_+	hypothetical protein	NA	A0A1S5SG46	Streptococcus_phage	100.0	1.4e-31
WP_000526245.1|43052_43493_+	hypothetical protein	NA	A0A141E165	Streptococcus_phage	100.0	4.0e-76
WP_000221695.1|43437_43776_+	hypothetical protein	NA	A0A1S5SG92	Streptococcus_phage	100.0	1.8e-60
WP_000069060.1|43768_44005_+	hypothetical protein	NA	A0A1S5SGG9	Streptococcus_phage	100.0	1.3e-33
WP_000571659.1|44001_44337_+	hypothetical protein	NA	A0A1S5SG59	Streptococcus_phage	100.0	3.1e-57
WP_000205998.1|44352_44961_+	hypothetical protein	NA	A0A1S5SG55	Streptococcus_phage	100.0	3.2e-108
WP_000387407.1|44966_45242_+	hypothetical protein	NA	A0A141E163	Streptococcus_phage	100.0	1.2e-43
WP_000560881.1|45253_45640_+	DUF5361 domain-containing protein	NA	A0A1S5SGD4	Streptococcus_phage	100.0	1.2e-65
WP_000179968.1|45639_48105_+	hypothetical protein	NA	A0A141E161	Streptococcus_phage	100.0	1.0e-253
WP_000499607.1|48104_48803_+	adenylosuccinate synthetase	NA	A0A141E160	Streptococcus_phage	100.0	2.5e-133
WP_139665152.1|48799_56173_+|tail	tail fiber domain-containing protein	tail	A0A1S5SFB7	Streptococcus_phage	65.4	0.0e+00
WP_001091112.1|56266_56470_+	hypothetical protein	NA	A0A1S5SCH7	Streptococcus_phage	100.0	3.8e-26
WP_000852244.1|56472_56823_+	hypothetical protein	NA	A0A1S5SFA0	Streptococcus_phage	100.0	3.6e-64
WP_001165341.1|56832_57249_+|holin	phage holin family protein	holin	A0A1S5SFD4	Streptococcus_phage	100.0	2.4e-67
WP_001186228.1|57252_57585_+|holin	phage holin	holin	E8ZDJ3	Streptococcus_phage	100.0	3.3e-51
WP_050197950.1|57588_58545_+	N-acetylmuramoyl-L-alanine amidase family protein	NA	E8ZDJ2	Streptococcus_phage	100.0	1.3e-145
WP_001209433.1|58764_58944_-	hypothetical protein	NA	Q3BLW4	Phage_SK137	96.6	3.5e-23
WP_001030863.1|59085_59235_-	hypothetical protein	NA	C5J952	Streptococcus_phage	95.9	9.1e-17
WP_000291872.1|59514_59982_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_000701992.1|60167_60611_+	dUTP diphosphatase	NA	Q2WG49	Clostridium_botulinum_D_phage	47.3	2.1e-29
WP_001828232.1|60612_61128_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_073176637.1|61141_62503_+	DNA repair protein RadA	NA	NA	NA	NA	NA
WP_001809263.1|62575_63073_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_000272771.1|63093_63438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088778796.1|63434_64785_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	50.9	5.9e-62
>prophage 2
NZ_LR595848	Streptococcus pneumoniae strain 4559 isolate 4559 chromosome 1	2150981	77534	88990	2150981		Synechococcus_phage(33.33%)	8	NA	NA
WP_000668272.1|77534_79688_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.0	3.6e-45
WP_000801611.1|79700_81050_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_000043309.1|81219_81927_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.3e-41
WP_050167432.1|81928_82072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000361173.1|82128_85854_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.8	2.1e-37
WP_000220633.1|85946_87389_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	5.7e-55
WP_001284588.1|87425_88448_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
WP_000717505.1|88444_88990_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	5.7e-24
>prophage 3
NZ_LR595848	Streptococcus pneumoniae strain 4559 isolate 4559 chromosome 1	2150981	140201	164270	2150981	tRNA,bacteriocin	Streptococcus_phage(66.67%)	23	NA	NA
WP_001230165.1|140201_140489_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000724257.1|140540_142649_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571330.1|142645_143287_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
WP_001038474.1|143493_144300_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001268157.1|145024_145888_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000915346.1|146353_146692_+	peptidase C39	NA	NA	NA	NA	NA
WP_000424429.1|146669_147041_+|bacteriocin	SPH_0218 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000989849.1|147048_147261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001812343.1|149515_150493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424478.1|150850_151225_+|bacteriocin	SPH_0224 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000619809.1|151432_152335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424425.1|152390_152723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072921.1|152719_153448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000770315.1|154192_154423_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	55.9	1.5e-13
WP_001813670.1|154407_154686_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	53.8	9.3e-23
WP_001035358.1|154972_156802_+	pneumococcal surface protein A	NA	NA	NA	NA	NA
WP_001282958.1|157206_158328_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000193611.1|158468_158924_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000220953.1|158933_160847_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_000331980.1|161198_162878_-	ribonuclease J	NA	NA	NA	NA	NA
WP_000639577.1|162879_163113_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_000977347.1|163930_164083_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
WP_000180803.1|164084_164270_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibA	bacteriocin	NA	NA	NA	NA
>prophage 4
NZ_LR595848	Streptococcus pneumoniae strain 4559 isolate 4559 chromosome 1	2150981	460263	522739	2150981	tRNA,bacteriocin,transposase	Bacillus_phage(16.67%)	58	NA	NA
WP_000436244.1|460263_461520_-|transposase	ISL3-like element IS1167A family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	98.6	6.3e-236
WP_000904589.1|461792_462854_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000260642.1|463201_465526_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.9	7.9e-115
WP_001811329.1|465893_466109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000262362.1|466438_466723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001810089.1|467334_467505_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000454376.1|468065_468524_+	PTS alpha-glucoside transporter subunit IIB	NA	NA	NA	NA	NA
WP_001813625.1|468649_470089_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000691685.1|470092_471442_-	Trk system potassium transporter TrkA	NA	NA	NA	NA	NA
WP_001063601.1|471629_472478_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA	NA
WP_000403162.1|472492_473041_+	ECF-type riboflavin transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000693286.1|473047_473305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000656555.1|473406_475089_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	7.7e-19
WP_001148103.1|475073_475904_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000181374.1|476096_476600_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000185835.1|477052_477616_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001813491.1|477629_478256_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000867290.1|478283_478673_+	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
WP_000333647.1|478677_479127_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000418402.1|479254_479842_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_000105242.1|480231_481839_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	8.9e-142
WP_000026645.1|482397_484029_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_000795204.1|484317_489258_+	bacterial Ig-like domain-containing protein	NA	NA	NA	NA	NA
WP_001096743.1|489347_490544_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000119896.1|490679_491207_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000659547.1|491283_491640_+	transcriptional repressor GlnR	NA	NA	NA	NA	NA
WP_001122900.1|491676_493023_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001813627.1|493112_493232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410533.1|493196_493346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078145257.1|493776_495096_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000651177.1|495152_495950_+	tyrosine-type DNA invertase PsrA	NA	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
WP_000240090.1|495960_496569_+	restriction endonuclease subunit S	NA	A0A1V0SLK8	Klosneuvirus	30.1	3.9e-13
WP_061630901.1|496516_498079_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000029056.1|498078_499542_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_000229096.1|499554_501888_-	DEAD/DEAH box helicase family protein	NA	Q5YA94	Bacillus_phage	27.9	4.5e-25
WP_000550237.1|502566_503004_+	DUF2812 domain-containing protein	NA	NA	NA	NA	NA
WP_000255769.1|503167_504202_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_000046031.1|504228_504753_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_000034668.1|505232_507056_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	7.8e-134
WP_001066288.1|508164_509301_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	32.0	1.5e-26
WP_001813906.1|509622_509862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777760.1|510023_510311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001278301.1|510320_510731_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
WP_000889923.1|510798_511530_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	9.0e-25
WP_000653771.1|511526_512576_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000132572.1|512743_513073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000682132.1|513349_513688_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001219146.1|513692_514430_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001099895.1|514443_515784_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000358814.1|515828_515984_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
WP_001069098.1|516040_517402_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_000205157.1|517412_519566_-	peptide cleavage/export ABC transporter BlpA	NA	W8CYL7	Bacillus_phage	27.9	6.3e-42
WP_001093268.1|519846_520077_+|bacteriocin	bacteriocin-like peptide BlpU	bacteriocin	NA	NA	NA	NA
WP_000346298.1|520079_520199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000727118.1|520495_520660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000846944.1|520656_521061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000379879.1|522265_522520_+|bacteriocin	two-peptide bacteriocin subunit BlpM	bacteriocin	NA	NA	NA	NA
WP_001099492.1|522535_522739_+|bacteriocin	two-peptide bacteriocin subunit BlpN	bacteriocin	NA	NA	NA	NA
>prophage 5
NZ_LR595848	Streptococcus pneumoniae strain 4559 isolate 4559 chromosome 1	2150981	840388	917191	2150981	transposase,protease,holin,integrase	Streptococcus_phage(52.63%)	70	838954:839013	841895:842436
838954:839013	attL	AAATCCCGATTTAACGAGATGTTCGAAGAGTATCCTGACTCAGTATTCTTAGATACATAT	NA	NA	NA	NA
WP_000444456.1|840388_841354_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	29.6	1.8e-33
WP_050393675.1|841387_842494_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
841895:842436	attR	AAATCCCGATTTAACGAGATGTTCGAAGAGTATCCTGACTCAGTATTCTTAGATACATATATAAAAGAACTAAGAGCAGGTAAAAGTTTAGCTGGTGAGGAAAATAATAAGAATAAAGTATTAAAAACAGGAGCTGTATCGTACGATTATTTTAATTCATCTGAAGTAAAAAATTTACCAATTGACTATATTCCCTTAGATGAACATAAAGTTGAAATAGGGGATGTAATTATTAGTCGTATGAACACTTCTGAACTAGTTGGGGCTGCTGGGTATGTTTGGGCTATCAATAGTGATAATATATATTTGCCAGATAGATTATGGAAGGTTATTCTGAATGATCGAGTAAATCCAGTTTTCTTATGGAAGCTTATTACAAATGAGAAAACAAAATTAAAAATTAAGAGAATTTCCTCTGGAACTAGTGGGAGTATGAAAAATATTTCGAAATCACAATTGTTACAAATTAGAGTTCCCTTCCCCCCTCTAGCCCTCCAAAATGAGTTCGCAGACTTTGTAGCCCTGGTCGACAAATCACAATT	NA	NA	NA	NA
WP_000526345.1|842523_845874_+	DEAD/DEAH box helicase family protein	NA	A0A2H4P9W3	Gordonia_phage	24.8	1.4e-11
WP_001813704.1|846273_847620_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	39.8	2.2e-77
WP_050141837.1|847681_847876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000693053.1|847853_848054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000840765.1|848586_848730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000821301.1|848822_849410_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000926541.1|849801_850611_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000078473.1|850615_851317_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_000654135.1|851341_852259_+	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
WP_000537365.1|852286_853828_+	sodium:solute symporter	NA	NA	NA	NA	NA
WP_000587138.1|853846_854305_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA	NA
WP_000739354.1|854306_856529_+	exo-alpha-sialidase	NA	NA	NA	NA	NA
WP_000248712.1|856568_857678_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_000691263.1|857834_858725_+	ROK family protein	NA	NA	NA	NA	NA
WP_000185367.1|858749_859073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001018348.1|859062_861054_+	V-type ATP synthase subunit I	NA	NA	NA	NA	NA
WP_000400484.1|861069_861546_+	V-type ATP synthase subunit K	NA	NA	NA	NA	NA
WP_000067169.1|861579_862161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000380539.1|862225_863233_+	V-type ATPase subunit	NA	NA	NA	NA	NA
WP_000387941.1|863222_863543_+	V-type ATP synthase subunit F	NA	NA	NA	NA	NA
WP_000191784.1|863605_865381_+	V-type ATP synthase subunit A	NA	NA	NA	NA	NA
WP_000111249.1|865381_866767_+	V-type ATP synthase subunit B	NA	NA	NA	NA	NA
WP_000251933.1|866789_867401_+	V-type ATP synthase subunit D	NA	NA	NA	NA	NA
WP_000012987.1|869152_869413_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
WP_001043002.1|869516_869987_-	arginine repressor	NA	NA	NA	NA	NA
WP_001212044.1|870003_872277_-	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
WP_000561537.1|872623_875725_+	DNA polymerase III subunit alpha	NA	A0A291AWR1	Streptomyces_phage	32.8	8.9e-114
WP_000820852.1|875807_876815_+	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_001042814.1|876873_878379_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_001813690.1|879542_879761_-	helix-turn-helix transcriptional regulator	NA	B3GVX0	Streptococcus_phage	61.3	1.0e-16
WP_000749594.1|880196_881069_+	DUF4300 family protein	NA	NA	NA	NA	NA
WP_000420562.1|881701_882013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000759765.1|882016_882733_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000617845.1|882862_883678_-	TIGR03943 family protein	NA	NA	NA	NA	NA
WP_000123614.1|883674_884580_-	permease	NA	NA	NA	NA	NA
WP_000442116.1|884969_886289_+	DUF1919 domain-containing protein	NA	NA	NA	NA	NA
WP_000359134.1|886390_888520_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_000778585.1|888506_888956_+	SprT family protein	NA	NA	NA	NA	NA
WP_001085044.1|889013_889286_+	PspC domain-containing protein	NA	NA	NA	NA	NA
WP_000680767.1|889639_889831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000173358.1|890258_891017_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.3	7.7e-27
WP_000489398.1|891018_893007_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_162828736.1|893048_893693_-	VIT1/CCC1 transporter family protein	NA	NA	NA	NA	NA
WP_001153911.1|893718_894594_-|transposase	IS30 family transposase	transposase	H7BWC8	unidentified_phage	31.3	4.0e-27
WP_000661009.1|895300_896776_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001813869.1|896741_897458_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_000366720.1|897712_898573_+	polyamine aminopropyltransferase	NA	NA	NA	NA	NA
WP_000088777.1|898569_899829_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_000764364.1|899828_900956_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_000969454.1|900952_902038_+	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	47.2	5.9e-89
WP_001246755.1|902047_902923_+	N-carbamoylputrescine amidase	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	50.0	1.1e-77
WP_000593574.1|903103_903913_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000602446.1|904184_904406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000745370.1|904459_905131_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001025704.1|905372_906281_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
WP_000745389.1|906277_906739_+	signal peptidase II	NA	NA	NA	NA	NA
WP_000403193.1|906728_907616_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000728269.1|907618_909502_+|holin	phosphorylcholine esterase CbpE	holin	Q332B9	Clostridium_botulinum_C_phage	22.9	1.2e-09
WP_001844793.1|909581_910712_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.1e-114
WP_000254675.1|910721_911984_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.5	2.5e-139
WP_000689710.1|911987_912785_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.9	1.2e-59
WP_000033390.1|913004_913643_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	67.6	6.4e-75
WP_050131708.1|913639_914530_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.4	1.9e-72
WP_000358228.1|914569_914887_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_001166880.1|914889_915759_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	76.1	2.7e-116
WP_001261452.1|915985_916504_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_000345256.1|916612_916750_+	replication initiator protein A	NA	NA	NA	NA	NA
WP_000008691.1|916756_917191_+	replication initiator protein A	NA	A0A2P0VK56	Streptococcus_phage	40.0	4.6e-08
>prophage 6
NZ_LR595848	Streptococcus pneumoniae strain 4559 isolate 4559 chromosome 1	2150981	1228001	1294267	2150981	tRNA,transposase,protease,holin	Bacillus_phage(21.43%)	59	NA	NA
WP_000021543.1|1228001_1229639_-|tRNA	methionine--tRNA ligase	tRNA	A0A167RM67	Powai_lake_megavirus	32.0	2.5e-75
WP_000903082.1|1229706_1230381_-	chloramphenicol acetyltransferase	NA	NA	NA	NA	NA
WP_000291699.1|1230439_1230562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001155321.1|1231226_1232180_+|transposase	IS30-like element ISSpn8 family transposase	transposase	H7BWC8	unidentified_phage	35.2	1.6e-34
WP_000705304.1|1232751_1233600_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	39.5	4.2e-34
WP_000643970.1|1233695_1234385_-	NTP transferase domain-containing protein	NA	A0A127AW70	Bacillus_phage	45.0	3.4e-05
WP_000837614.1|1234396_1235275_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000411218.1|1235264_1236134_-|holin	choline kinase LicA	holin	NA	NA	NA	NA
WP_000609886.1|1236150_1237173_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000638502.1|1237177_1237885_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000835893.1|1238220_1239708_+	type IV teichoic acid flippase TacF	NA	NA	NA	NA	NA
WP_000811992.1|1239717_1240521_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	27.1	5.3e-10
WP_001199651.1|1240522_1241332_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	9.1e-10
WP_001126409.1|1241606_1244783_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_000166701.1|1245095_1246175_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.9	6.3e-59
WP_001293845.1|1246224_1247148_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	31.7	8.7e-25
WP_000850024.1|1247166_1247688_-	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_000244451.1|1247898_1248528_-	endonuclease III	NA	NA	NA	NA	NA
WP_000773226.1|1248527_1249070_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000389597.1|1249239_1249557_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001812708.1|1249795_1251355_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	27.5	9.3e-11
WP_000895736.1|1251503_1252403_-|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
WP_000219823.1|1252404_1252965_-	LemA family protein	NA	NA	NA	NA	NA
WP_000801941.1|1253058_1253772_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_000808288.1|1254123_1255407_+	uracil transporter	NA	Q9KX94	Enterobacteria_phage	35.3	4.0e-60
WP_000863651.1|1255601_1257173_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_000402071.1|1257184_1257517_-	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_000702355.1|1257607_1257985_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_001003498.1|1258056_1259361_+	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	30.2	1.7e-26
WP_127820909.1|1259373_1260180_+	sugar-phosphatase	NA	NA	NA	NA	NA
WP_000002875.1|1260390_1262166_-	DUF4365 domain-containing protein	NA	NA	NA	NA	NA
WP_000868700.1|1262651_1263833_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	NA	NA	NA	NA
WP_000722391.1|1263845_1265066_-	caspase family protein	NA	NA	NA	NA	NA
WP_000427009.1|1265159_1266014_+	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001812200.1|1266245_1266413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068669.1|1266693_1267041_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000237416.1|1267159_1267489_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	37.8	6.3e-10
WP_000712098.1|1267482_1267857_-	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_000362438.1|1267853_1268120_-	chorismate mutase	NA	NA	NA	NA	NA
WP_001162130.1|1268235_1268679_-	flavodoxin	NA	NA	NA	NA	NA
WP_000401770.1|1268782_1269718_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_001808393.1|1269771_1270056_+	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000252103.1|1270112_1270691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000199540.1|1272661_1274008_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000058659.1|1274296_1277875_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_001196961.1|1278121_1278490_-	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_001287278.1|1278565_1279066_-	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_000862486.1|1279315_1280575_-	TRZ/ATZ family protein	NA	NA	NA	NA	NA
WP_000828854.1|1280876_1282625_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.1	2.8e-48
WP_000681691.1|1282626_1284351_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.9	2.4e-44
WP_000818203.1|1284408_1285347_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000692438.1|1285641_1286511_-	homoserine kinase	NA	NA	NA	NA	NA
WP_000216377.1|1286512_1287799_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_000782680.1|1287949_1288687_-	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000461502.1|1288828_1289863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000565082.1|1289891_1291325_-	O-antigen polysaccharide polymerase Wzy family protein	NA	NA	NA	NA	NA
WP_000446971.1|1291340_1292327_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000225908.1|1292328_1293432_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_001061981.1|1293421_1294267_-|holin	phosphorylcholine transferase LicD	holin	NA	NA	NA	NA
>prophage 7
NZ_LR595848	Streptococcus pneumoniae strain 4559 isolate 4559 chromosome 1	2150981	1373085	1378864	2150981		Streptococcus_phage(50.0%)	9	NA	NA
WP_001272961.1|1373085_1373697_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_000855754.1|1373741_1374470_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000272318.1|1374508_1375420_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.1	3.8e-89
WP_000926599.1|1375485_1375710_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000590970.1|1375787_1376531_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
WP_001103449.1|1376530_1377331_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000889093.1|1377488_1377845_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_001170341.1|1377857_1378370_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	55.6	1.3e-46
WP_000405821.1|1378369_1378864_-	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.8	2.9e-43
>prophage 8
NZ_LR595848	Streptococcus pneumoniae strain 4559 isolate 4559 chromosome 1	2150981	1472735	1479486	2150981	protease	Streptococcus_phage(50.0%)	9	NA	NA
WP_000081011.1|1472735_1473701_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
WP_000011310.1|1473734_1474646_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	99.3	9.8e-154
WP_001231105.1|1474642_1475620_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	99.7	4.4e-184
WP_000163033.1|1475616_1476507_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	3.9e-06
WP_001140412.1|1476558_1476939_-	RidA family protein	NA	NA	NA	NA	NA
WP_000422599.1|1476949_1477537_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_000106346.1|1477545_1478778_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
WP_000442275.1|1478809_1478980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050111528.1|1478979_1479486_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	42.5	2.3e-27
>prophage 9
NZ_LR595848	Streptococcus pneumoniae strain 4559 isolate 4559 chromosome 1	2150981	1768138	1775470	2150981		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_000167850.1|1768138_1768840_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	36.5	4.1e-35
WP_000777248.1|1769262_1770222_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	4.0e-57
WP_001193674.1|1770211_1771168_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000764304.1|1771164_1771917_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	5.6e-14
WP_000858246.1|1772012_1772978_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000821614.1|1773202_1773445_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	58.0	1.0e-17
WP_001222228.1|1773444_1774167_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000105310.1|1774153_1774723_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
WP_000351912.1|1774741_1775470_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	6.9e-09
>prophage 10
NZ_LR595848	Streptococcus pneumoniae strain 4559 isolate 4559 chromosome 1	2150981	2128638	2137392	2150981		Streptococcus_phage(33.33%)	9	NA	NA
WP_000510412.1|2128638_2129478_-	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	1.1e-13
WP_000835715.1|2129462_2130290_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	33.3	3.5e-17
WP_000712129.1|2130286_2130832_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001227958.1|2130842_2131664_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000170191.1|2131705_2132989_-	insulinase family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	8.4e-18
WP_000424272.1|2132985_2134236_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.3	2.7e-93
WP_000455903.1|2134394_2134763_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
WP_000266651.1|2134765_2135863_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_000073428.1|2135913_2137392_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
