assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900492555.1_CECT9104	NZ_LS991421	Lactobacillus zeae isolate CECT 9104 chromosome 1	1	113365-113508	1	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	Orphan	GTGAACGCGTTTAAGAGAGCAGCAGAGAAAACCAGTGGCCTC	42	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	NA|179aa|up_9|NZ_LS991421.1_102474_103011_+,NA|159aa|up_8|NZ_LS991421.1_103060_103537_+,NA|145aa|up_7|NZ_LS991421.1_103630_104065_-,NA|176aa|up_6|NZ_LS991421.1_104572_105100_+,NA|73aa|down_7|NZ_LS991421.1_120682_120901_+	NA|179aa|up_9|NZ_LS991421.1_102474_103011_+	NA	NA|159aa|up_8|NZ_LS991421.1_103060_103537_+	NA	NA|145aa|up_7|NZ_LS991421.1_103630_104065_-	NA	NA|176aa|up_6|NZ_LS991421.1_104572_105100_+	NA	NA|723aa|up_5|NZ_LS991421.1_105178_107347_-	cd06418, GH25_BacA-like, BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|256aa|up_4|NZ_LS991421.1_107700_108468_-	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|302aa|up_3|NZ_LS991421.1_108464_109370_-	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|384aa|up_2|NZ_LS991421.1_109634_110786_-	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins	NA|235aa|up_1|NZ_LS991421.1_110792_111497_-	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|450aa|up_0|NZ_LS991421.1_111506_112856_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|460aa|down_0|NZ_LS991421.1_113864_115244_+	PRK09034, PRK09034, aspartate kinase; Reviewed	NA|336aa|down_1|NZ_LS991421.1_115245_116253_+	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|353aa|down_2|NZ_LS991421.1_116256_117315_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|88aa|down_3|NZ_LS991421.1_117698_117962_+	cd17040, Ubl_MoaD_like, ubiquitin-like (Ubl) domain found in a group of small sulfide carrier proteins	NA|247aa|down_4|NZ_LS991421.1_118045_118786_+	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	NA|425aa|down_5|NZ_LS991421.1_118715_119990_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|224aa|down_6|NZ_LS991421.1_119979_120651_+	pfam13489, Methyltransf_23, Methyltransferase domain	NA|73aa|down_7|NZ_LS991421.1_120682_120901_+	NA	NA|226aa|down_8|NZ_LS991421.1_120945_121623_+	TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group	NA|110aa|down_9|NZ_LS991421.1_121619_121949_+	COG5294, COG5294, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_900492555.1_CECT9104	NZ_LS991421	Lactobacillus zeae isolate CECT 9104 chromosome 1	2	706928-707043	2	CRISPRCasFinder	no	cas3,c2c9_V-U4	csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	Unclear	GCAGGCTCCTGCGCCGGGGAGCGCGTTAT	29	0	0	NA	NA	NA	1	1	Unclear	csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	NA|312aa|up_5|NZ_LS991421.1_699829_700765_+,NA|364aa|up_3|NZ_LS991421.1_704082_705174_+,NA	NA|369aa|up_9|NZ_LS991421.1_694973_696080_+	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa	NA|438aa|up_8|NZ_LS991421.1_696196_697510_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|319aa|up_7|NZ_LS991421.1_697516_698473_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	cas3|449aa|up_6|NZ_LS991421.1_698478_699825_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|312aa|up_5|NZ_LS991421.1_699829_700765_+	NA	NA|882aa|up_4|NZ_LS991421.1_701231_703877_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|364aa|up_3|NZ_LS991421.1_704082_705174_+	NA	NA|87aa|up_2|NZ_LS991421.1_705278_705539_+	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|145aa|up_1|NZ_LS991421.1_705538_705973_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|107aa|up_0|NZ_LS991421.1_706467_706788_+	PRK13678, PRK13678, hypothetical protein; Provisional	NA|82aa|down_0|NZ_LS991421.1_707160_707406_+	pfam05164, ZapA, Cell division protein ZapA	NA|178aa|down_1|NZ_LS991421.1_707418_707952_+	pfam02674, Colicin_V, Colicin V production protein	NA|787aa|down_2|NZ_LS991421.1_708017_710378_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|104aa|down_3|NZ_LS991421.1_710444_710756_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|50aa|down_4|NZ_LS991421.1_711276_711426_+	pfam12459, DUF3687, D-Ala-teichoic acid biosynthesis protein	NA|507aa|down_5|NZ_LS991421.1_711443_712964_+	TIGR01734, D-alanine--polyphosphoribitol_ligase_subunit_1, D-alanine--poly(phosphoribitol) ligase, subunit 1	NA|406aa|down_6|NZ_LS991421.1_712963_714181_+	TIGR04091, hypothetical_protein, D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA|82aa|down_7|NZ_LS991421.1_714248_714494_+	PRK05087, PRK05087, D-alanine--poly(phosphoribitol) ligase subunit DltC	NA|424aa|down_8|NZ_LS991421.1_714490_715762_+	TIGR04092, hypothetical_protein, D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA|161aa|down_9|NZ_LS991421.1_715909_716392_-	pfam10702, DUF2507, Protein of unknown function (DUF2507)
GCF_900492555.1_CECT9104	NZ_LS991421	Lactobacillus zeae isolate CECT 9104 chromosome 1	3	1150777-1151675	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	csa3,cas4,cas1,cas2,cas5,cas8c,cas7,cas3	csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	Type I-C, or Type I-U?,Type I-U,Type I-A, Type I-C	ATTTCAATTCACGCAGTCACGTAGACTGCGAC,ATTTCAATTCACGCAGTCACGTAGACTGCGAC,ATTTCAATTCACGCAGTCACGTAGACTGCGAC	32,32,32	0	0	NA	NA	NA:NA:NA	13,13,13	13	TypeI-C,orTypeI-U?,TypeI-U,TypeI-A,TypeI-C	csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	NA|257aa|up_3|NZ_LS991421.1_1147936_1148707_+,NA|111aa|up_2|NZ_LS991421.1_1148939_1149272_+,NA|59aa|up_0|NZ_LS991421.1_1150472_1150649_-,NA	NA|243aa|up_9|NZ_LS991421.1_1141608_1142337_+	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]	NA|271aa|up_8|NZ_LS991421.1_1142619_1143432_+	PRK07329, PRK07329, hypothetical protein; Provisional	NA|547aa|up_7|NZ_LS991421.1_1143485_1145126_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|299aa|up_6|NZ_LS991421.1_1145265_1146162_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|225aa|up_5|NZ_LS991421.1_1146179_1146854_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|311aa|up_4|NZ_LS991421.1_1147011_1147944_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|257aa|up_3|NZ_LS991421.1_1147936_1148707_+	NA	NA|111aa|up_2|NZ_LS991421.1_1148939_1149272_+	NA	csa3|95aa|up_1|NZ_LS991421.1_1149447_1149732_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|59aa|up_0|NZ_LS991421.1_1150472_1150649_-	NA	cas4|219aa|down_0|NZ_LS991421.1_1152038_1152695_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|down_1|NZ_LS991421.1_1152694_1153726_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|down_2|NZ_LS991421.1_1153734_1154025_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas5|243aa|down_3|NZ_LS991421.1_1154316_1155045_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|630aa|down_4|NZ_LS991421.1_1155041_1156931_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|297aa|down_5|NZ_LS991421.1_1156920_1157811_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas3|799aa|down_6|NZ_LS991421.1_1157869_1160266_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|249aa|down_7|NZ_LS991421.1_1162569_1163316_-	pfam18299, R2K_2, ATP-grasp domain, R2K clade family 2	NA|302aa|down_8|NZ_LS991421.1_1163312_1164218_-	pfam14243, DUF4343, Domain of unknown function (DUF4343)	NA|203aa|down_9|NZ_LS991421.1_1164359_1164968_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_900492555.1_CECT9104	NZ_LS991421	Lactobacillus zeae isolate CECT 9104 chromosome 1	4	1160577-1162275	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	csa3,cas4,cas1,cas2,cas5,cas8c,cas7,cas3	csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	Type I-C, or Type I-U?,Type I-U,Type I-A, Type I-C	ATTTCAATTCACGCAGTCACGTGGACTGCGAC,GTCGCAGTCCACGTGACTGCGTGAATTGAAAT,GTCGCAGTCCACGTGACTGCGTGAATTGAAAT	32,32,32	0	0	NA	NA	NA:NA:NA	24,25,25	25	TypeI-C,orTypeI-U?,TypeI-U,TypeI-A,TypeI-C	csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	NA|111aa|up_9|NZ_LS991421.1_1148939_1149272_+,NA|59aa|up_7|NZ_LS991421.1_1150472_1150649_-,NA|499aa|down_6|NZ_LS991421.1_1167922_1169419_+,NA|340aa|down_7|NZ_LS991421.1_1169430_1170450_+	NA|111aa|up_9|NZ_LS991421.1_1148939_1149272_+	NA	csa3|95aa|up_8|NZ_LS991421.1_1149447_1149732_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|59aa|up_7|NZ_LS991421.1_1150472_1150649_-	NA	cas4|219aa|up_6|NZ_LS991421.1_1152038_1152695_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|up_5|NZ_LS991421.1_1152694_1153726_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_4|NZ_LS991421.1_1153734_1154025_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas5|243aa|up_3|NZ_LS991421.1_1154316_1155045_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|630aa|up_2|NZ_LS991421.1_1155041_1156931_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|297aa|up_1|NZ_LS991421.1_1156920_1157811_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas3|799aa|up_0|NZ_LS991421.1_1157869_1160266_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|249aa|down_0|NZ_LS991421.1_1162569_1163316_-	pfam18299, R2K_2, ATP-grasp domain, R2K clade family 2	NA|302aa|down_1|NZ_LS991421.1_1163312_1164218_-	pfam14243, DUF4343, Domain of unknown function (DUF4343)	NA|203aa|down_2|NZ_LS991421.1_1164359_1164968_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|364aa|down_3|NZ_LS991421.1_1164964_1166056_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|255aa|down_4|NZ_LS991421.1_1166072_1166837_-	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|297aa|down_5|NZ_LS991421.1_1166833_1167724_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|499aa|down_6|NZ_LS991421.1_1167922_1169419_+	NA	NA|340aa|down_7|NZ_LS991421.1_1169430_1170450_+	NA	NA|1041aa|down_8|NZ_LS991421.1_1170446_1173569_+	TIGR02680, conserved_hypothetical_protein, TIGR02680 family protein	NA|271aa|down_9|NZ_LS991421.1_1173609_1174422_+	pfam09664, DUF2399, Protein of unknown function C-terminus (DUF2399)
GCF_900492555.1_CECT9104	NZ_LS991421	Lactobacillus zeae isolate CECT 9104 chromosome 1	5	2121094-2121248	5	CRISPRCasFinder	no	csn2,cas2,cas1,cas9	csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	Type II-B,Type II-C,Type II-A	TCCATAACGCGTTCGCCGGCGCAGGAGTCTGCGTGTAAGGACCTTGGCCGCAATG	55	0	0	NA	NA	NA	1	1	TypeII-B,TypeII-C,TypeII-A	csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	NA,NA|139aa|down_6|NZ_LS991421.1_2130160_2130577_-	NA|216aa|up_9|NZ_LS991421.1_2106582_2107230_+	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|373aa|up_8|NZ_LS991421.1_2107838_2108957_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|340aa|up_7|NZ_LS991421.1_2108969_2109989_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|642aa|up_6|NZ_LS991421.1_2110114_2112040_+	pfam03169, OPT, OPT oligopeptide transporter protein	NA|121aa|up_5|NZ_LS991421.1_2112054_2112417_+	pfam05402, PqqD, Coenzyme PQQ synthesis protein D (PqqD)	NA|476aa|up_4|NZ_LS991421.1_2112654_2114082_+	pfam03577, Peptidase_C69, Peptidase family C69	NA|445aa|up_3|NZ_LS991421.1_2114425_2115760_-	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|473aa|up_2|NZ_LS991421.1_2115976_2117395_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|189aa|up_1|NZ_LS991421.1_2117445_2118012_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|930aa|up_0|NZ_LS991421.1_2118222_2121012_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|484aa|down_0|NZ_LS991421.1_2121473_2122925_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|616aa|down_1|NZ_LS991421.1_2122944_2124792_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|287aa|down_2|NZ_LS991421.1_2124954_2125815_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|540aa|down_3|NZ_LS991421.1_2125956_2127576_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|563aa|down_4|NZ_LS991421.1_2127575_2129264_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|down_5|NZ_LS991421.1_2129443_2129869_-	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|139aa|down_6|NZ_LS991421.1_2130160_2130577_-	NA	csn2|227aa|down_7|NZ_LS991421.1_2133417_2134098_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_8|NZ_LS991421.1_2134094_2134400_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_9|NZ_LS991421.1_2134377_2135283_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI
GCF_900492555.1_CECT9104	NZ_LS991421	Lactobacillus zeae isolate CECT 9104 chromosome 1	6	2130589-2133397	6,3,3	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	Type II-B,Type II-C,Type II-A	GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC,GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC,GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	36,36,36	1	2	2133002-2133031|2133002-2133031	NZ_LS991421.1_3012640-3012669|NZ_LS991422.1_5221-5192	NA:NA:NA	42,42,21	42	TypeII-B,TypeII-C,TypeII-A	csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	NA|139aa|up_0|NZ_LS991421.1_2130160_2130577_-,NA	NA|473aa|up_9|NZ_LS991421.1_2115976_2117395_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|189aa|up_8|NZ_LS991421.1_2117445_2118012_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|930aa|up_7|NZ_LS991421.1_2118222_2121012_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|484aa|up_6|NZ_LS991421.1_2121473_2122925_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|616aa|up_5|NZ_LS991421.1_2122944_2124792_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|287aa|up_4|NZ_LS991421.1_2124954_2125815_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|540aa|up_3|NZ_LS991421.1_2125956_2127576_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|563aa|up_2|NZ_LS991421.1_2127575_2129264_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_1|NZ_LS991421.1_2129443_2129869_-	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|139aa|up_0|NZ_LS991421.1_2130160_2130577_-	NA	csn2|227aa|down_0|NZ_LS991421.1_2133417_2134098_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_LS991421.1_2134094_2134400_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_LS991421.1_2134377_2135283_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1358aa|down_3|NZ_LS991421.1_2135481_2139555_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|576aa|down_4|NZ_LS991421.1_2139809_2141537_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|581aa|down_5|NZ_LS991421.1_2141517_2143260_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|338aa|down_6|NZ_LS991421.1_2143256_2144270_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|475aa|down_7|NZ_LS991421.1_2144266_2145691_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|435aa|down_8|NZ_LS991421.1_2145923_2147228_-	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|340aa|down_9|NZ_LS991421.1_2147334_2148354_+	PRK09358, PRK09358, adenosine deaminase; Provisional
GCF_900492555.1_CECT9104	NZ_LS991421	Lactobacillus zeae isolate CECT 9104 chromosome 1	7	2620989-2621090	7	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	Orphan	CATCATGGGAGATGTCAAAACCGGCCTCGTTGTCGG	36	1	1	2621025-2621054	NZ_LS991421.1_3026145-3026116	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	NA|158aa|up_8|NZ_LS991421.1_2604097_2604571_-,NA	NA|233aa|up_9|NZ_LS991421.1_2603320_2604019_+	pfam04474, DUF554, Protein of unknown function (DUF554)	NA|158aa|up_8|NZ_LS991421.1_2604097_2604571_-	NA	NA|662aa|up_7|NZ_LS991421.1_2605289_2607275_-	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]	NA|310aa|up_6|NZ_LS991421.1_2607278_2608208_-	TIGR03828, pfkB, 1-phosphofructokinase	NA|251aa|up_5|NZ_LS991421.1_2608332_2609085_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|510aa|up_4|NZ_LS991421.1_2609318_2610848_+	pfam18483, Bact_lectin, Bacterial lectin	NA|2211aa|up_3|NZ_LS991421.1_2610848_2617481_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|246aa|up_2|NZ_LS991421.1_2617634_2618372_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|417aa|up_1|NZ_LS991421.1_2618476_2619727_-	pfam01120, Alpha_L_fucos, Alpha-L-fucosidase	NA|305aa|up_0|NZ_LS991421.1_2619946_2620861_+	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component	NA|276aa|down_0|NZ_LS991421.1_2621713_2622541_+	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|2053aa|down_1|NZ_LS991421.1_2622897_2629056_+	pfam18483, Bact_lectin, Bacterial lectin	NA|1813aa|down_2|NZ_LS991421.1_2629562_2635001_+	pfam18483, Bact_lectin, Bacterial lectin	NA|106aa|down_3|NZ_LS991421.1_2635118_2635436_-	COG5294, COG5294, Uncharacterized protein conserved in bacteria [Function unknown]	NA|148aa|down_4|NZ_LS991421.1_2635643_2636087_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|465aa|down_5|NZ_LS991421.1_2636216_2637611_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|487aa|down_6|NZ_LS991421.1_2637750_2639211_-	pfam00199, Catalase, Catalase	NA|252aa|down_7|NZ_LS991421.1_2639359_2640115_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|267aa|down_8|NZ_LS991421.1_2640310_2641111_+	PRK06357, PRK06357, hypothetical protein; Provisional	NA|146aa|down_9|NZ_LS991421.1_2641540_2641978_-	COG4154, FucU, Fucose dissimilation pathway protein FucU [Carbohydrate transport and metabolism]
GCF_900492555.1_CECT9104	NZ_LS991421	Lactobacillus zeae isolate CECT 9104 chromosome 1	8	2958298-2958403	8	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	Orphan	CAGAAGCCTGCGTGTAAGGACCTC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	NA|69aa|up_3|NZ_LS991421.1_2954067_2954274_-,NA|74aa|up_2|NZ_LS991421.1_2954400_2954622_-,NA	NA|390aa|up_9|NZ_LS991421.1_2947856_2949026_-	PRK08068, PRK08068, transaminase; Reviewed	NA|261aa|up_8|NZ_LS991421.1_2949078_2949861_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|280aa|up_7|NZ_LS991421.1_2949897_2950737_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|362aa|up_6|NZ_LS991421.1_2951446_2952532_+	cd08172, GlyDH-like, Glycerol_dehydrogenase-like	NA|163aa|up_5|NZ_LS991421.1_2952602_2953091_-	pfam12821, ThrE_2, Threonine/Serine exporter, ThrE	NA|255aa|up_4|NZ_LS991421.1_2953092_2953857_-	pfam06738, ThrE, Putative threonine/serine exporter	NA|69aa|up_3|NZ_LS991421.1_2954067_2954274_-	NA	NA|74aa|up_2|NZ_LS991421.1_2954400_2954622_-	NA	NA|634aa|up_1|NZ_LS991421.1_2954854_2956756_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|463aa|up_0|NZ_LS991421.1_2956796_2958185_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|256aa|down_0|NZ_LS991421.1_2958609_2959377_-	COG1847, Jag, Predicted RNA-binding protein [General function prediction only]	NA|279aa|down_1|NZ_LS991421.1_2959394_2960231_-	PRK02944, PRK02944, YidC family membrane integrase SpoIIIJ	NA|119aa|down_2|NZ_LS991421.1_2960260_2960617_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|47aa|down_3|NZ_LS991421.1_2961091_2961232_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|450aa|down_4|NZ_LS991421.1_2961991_2963341_+	PRK00149, dnaA, chromosomal replication initiator protein DnaA	NA|380aa|down_5|NZ_LS991421.1_2963514_2964654_+	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|71aa|down_6|NZ_LS991421.1_2965378_2965591_+	pfam13275, S4_2, S4 domain	NA|373aa|down_7|NZ_LS991421.1_2965587_2966706_+	PRK00064, recF, recombination protein F; Reviewed	NA|654aa|down_8|NZ_LS991421.1_2966747_2968709_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|873aa|down_9|NZ_LS991421.1_2968774_2971393_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated
GCF_900492555.1_CECT9104	NZ_LS991421	Lactobacillus zeae isolate CECT 9104 chromosome 1	9	2960850-2960964	9	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	Orphan	GCTCTCCGAAACGCGCTCACAGGCCCAGAA	30	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,c2c9_V-U4,cas4,cas1,cas2,cas5,cas8c,cas7,RT,csn2,cas9	NA|69aa|up_6|NZ_LS991421.1_2954067_2954274_-,NA|74aa|up_5|NZ_LS991421.1_2954400_2954622_-,NA	NA|362aa|up_9|NZ_LS991421.1_2951446_2952532_+	cd08172, GlyDH-like, Glycerol_dehydrogenase-like	NA|163aa|up_8|NZ_LS991421.1_2952602_2953091_-	pfam12821, ThrE_2, Threonine/Serine exporter, ThrE	NA|255aa|up_7|NZ_LS991421.1_2953092_2953857_-	pfam06738, ThrE, Putative threonine/serine exporter	NA|69aa|up_6|NZ_LS991421.1_2954067_2954274_-	NA	NA|74aa|up_5|NZ_LS991421.1_2954400_2954622_-	NA	NA|634aa|up_4|NZ_LS991421.1_2954854_2956756_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|463aa|up_3|NZ_LS991421.1_2956796_2958185_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|256aa|up_2|NZ_LS991421.1_2958609_2959377_-	COG1847, Jag, Predicted RNA-binding protein [General function prediction only]	NA|279aa|up_1|NZ_LS991421.1_2959394_2960231_-	PRK02944, PRK02944, YidC family membrane integrase SpoIIIJ	NA|119aa|up_0|NZ_LS991421.1_2960260_2960617_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|47aa|down_0|NZ_LS991421.1_2961091_2961232_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|450aa|down_1|NZ_LS991421.1_2961991_2963341_+	PRK00149, dnaA, chromosomal replication initiator protein DnaA	NA|380aa|down_2|NZ_LS991421.1_2963514_2964654_+	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|71aa|down_3|NZ_LS991421.1_2965378_2965591_+	pfam13275, S4_2, S4 domain	NA|373aa|down_4|NZ_LS991421.1_2965587_2966706_+	PRK00064, recF, recombination protein F; Reviewed	NA|654aa|down_5|NZ_LS991421.1_2966747_2968709_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|873aa|down_6|NZ_LS991421.1_2968774_2971393_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|409aa|down_7|NZ_LS991421.1_2971645_2972872_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|144aa|down_8|NZ_LS991421.1_2973013_2973445_+	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|99aa|down_9|NZ_LS991421.1_2973571_2973868_+	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed
