The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483486	Haemophilus influenzae strain NCTC12194 chromosome 1	1915356	648910	656206	1915356		Mannheimia_phage(16.67%)	13	NA	NA
WP_111722486.1|648910_649393_-	DUF551 domain-containing protein	NA	A0A0M3LS47	Mannheimia_phage	45.5	9.5e-31
WP_005647194.1|650612_650972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005688797.1|650968_651205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005688799.1|651201_651771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111722488.1|651873_652308_-	single-stranded DNA-binding protein	NA	A0A059WRL7	Vibrio_phage	35.4	1.1e-17
WP_111722490.1|652317_652971_-	ERF family protein	NA	A0A077KCB6	Edwardsiella_phage	42.9	7.5e-31
WP_111722492.1|652981_653482_-	siphovirus Gp157 family protein	NA	B4XYS3	Lactobacillus_phage	36.6	6.2e-17
WP_154685869.1|653491_653635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172450353.1|653637_653799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048942415.1|653767_653992_-	ANR family transcriptional regulator	NA	NA	NA	NA	NA
WP_111722494.1|653991_654333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005651093.1|654346_655084_-	site-specific DNA-methyltransferase	NA	A0A0E3U2R2	Fusobacterium_phage	77.5	5.2e-113
WP_111722496.1|655174_656206_-	HNH endonuclease	NA	D0UIK6	Aggregatibacter_phage	82.8	5.2e-42
>prophage 2
NZ_LS483486	Haemophilus influenzae strain NCTC12194 chromosome 1	1915356	659519	665506	1915356		Mannheimia_phage(30.0%)	11	NA	NA
WP_044332609.1|659519_660173_-	helix-turn-helix domain-containing protein	NA	A0A1I9KG86	Aeromonas_phage	39.0	1.2e-31
WP_005655320.1|660274_660457_+	Cro/Cl family transcriptional regulator	NA	Q5G8T3	Enterobacteria_phage	51.7	1.6e-10
WP_048950185.1|660511_660952_+	hypothetical protein	NA	A0A0U4B0E3	Pseudomonas_phage	32.6	8.1e-13
WP_038441201.1|661000_661675_+	phage antirepressor KilAC domain-containing protein	NA	D0UIL6	Aggregatibacter_phage	68.4	1.1e-80
WP_111722498.1|661671_662394_+	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	68.8	5.9e-61
WP_042602862.1|662390_663017_+	replication P	NA	A0A0M3LS65	Mannheimia_phage	37.5	3.4e-28
WP_111722500.1|663013_663604_+	adenine methyltransferase	NA	A0A0M3LNW2	Mannheimia_phage	56.6	2.0e-51
WP_005692600.1|663608_664118_+	DUF1367 family protein	NA	A0A0M3LR84	Mannheimia_phage	76.2	1.1e-69
WP_105891871.1|664118_664547_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0D4DCG1	Acinetobacter_phage	39.0	5.0e-15
WP_111722502.1|664577_664763_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_111722504.1|664918_665506_+	recombination protein NinG	NA	A0A2I7RAC0	Vibrio_phage	48.5	3.7e-37
>prophage 3
NZ_LS483486	Haemophilus influenzae strain NCTC12194 chromosome 1	1915356	668865	701117	1915356	tail,terminase,tRNA,plate,capsid	Haemophilus_phage(21.43%)	42	NA	NA
WP_006995063.1|668865_669468_+	glycoside hydrolase family 19 protein	NA	Q7Y5V0	Haemophilus_phage	55.4	3.9e-58
WP_111722512.1|669460_669784_+	DUF2570 family protein	NA	Q7Y5U9	Haemophilus_phage	48.6	8.0e-18
WP_105897882.1|669695_669977_+	hypothetical protein	NA	Q776X1	Haemophilus_phage	71.1	1.4e-29
WP_111722514.1|669978_670326_-	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	56.1	1.5e-22
WP_005688873.1|670309_670561_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5NR91	Burkholderia_phage	52.9	9.9e-16
WP_105896317.1|670638_671157_+|terminase	terminase small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	39.2	3.6e-20
WP_005688879.1|672499_673816_+	DUF1073 domain-containing protein	NA	A0A2K9V3H1	Faecalibacterium_phage	32.0	3.0e-47
WP_005688881.1|673796_675014_+|capsid	minor capsid protein	capsid	I3PGT9	Xanthomonas_phage	35.6	1.8e-33
WP_005688883.1|675139_676213_+	DUF2213 domain-containing protein	NA	E5AGA6	Erwinia_phage	39.3	4.2e-55
WP_005643361.1|676226_676646_+	DUF2190 family protein	NA	NA	NA	NA	NA
WP_006995054.1|676653_677655_+	DUF2184 domain-containing protein	NA	A0A0N9SG07	Pseudomonas_phage	36.6	2.9e-50
WP_005688887.1|677657_677846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005688889.1|677849_678200_+	DUF4054 domain-containing protein	NA	NA	NA	NA	NA
WP_005688891.1|678192_678651_+	hypothetical protein	NA	A0A2I7R754	Vibrio_phage	34.5	1.8e-15
WP_005688893.1|678650_679010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005651165.1|679011_679521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005688895.1|679507_680581_+	DUF3383 family protein	NA	A0A0N9SJA3	Pseudomonas_phage	36.0	6.5e-64
WP_005643344.1|680626_681052_+	DUF3277 family protein	NA	A0A2K9V3K6	Faecalibacterium_phage	45.9	4.0e-25
WP_005643342.1|681051_681534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005643340.1|681569_681722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005688898.1|681718_684049_+	tape measure protein	NA	K7RVL7	Vibrio_phage	29.3	6.2e-35
WP_005688900.1|684139_684721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005643334.1|684717_685032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111722517.1|685028_685985_+	hypothetical protein	NA	A0A0N9RT60	Pseudomonas_phage	33.4	1.1e-33
WP_005688905.1|685987_686659_+	hypothetical protein	NA	A0A2K9V3M0	Faecalibacterium_phage	32.1	2.2e-17
WP_005688907.1|686655_687021_+	hypothetical protein	NA	K4RI30	Pseudomonas_phage	31.1	4.5e-09
WP_005688909.1|687013_688450_+|plate	baseplate J/gp47 family protein	plate	E5AGC3	Erwinia_phage	29.0	4.1e-45
WP_044332548.1|688458_689085_+	DUF2612 domain-containing protein	NA	A0A0N9SSD8	Pseudomonas_phage	37.4	1.0e-21
WP_111722519.1|689081_691340_+|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	56.2	1.1e-172
WP_005688914.1|691342_691969_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	45.2	2.7e-30
WP_006995417.1|691961_692450_+	hypothetical protein	NA	F6MIM0	Haemophilus_phage	56.2	1.9e-47
WP_005641687.1|692625_692745_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005688922.1|692806_693652_+	hypothetical protein	NA	F6MIM2	Haemophilus_phage	71.4	3.1e-117
WP_005688923.1|693690_693954_-	hypothetical protein	NA	F6MIM3	Haemophilus_phage	79.1	7.2e-33
WP_005654873.1|694632_695358_+|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_005654871.1|695410_695863_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_005649169.1|695929_697144_+	IscS subfamily cysteine desulfurase	NA	H7BUW1	unidentified_phage	35.5	1.5e-32
WP_005654861.1|697203_697584_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	80.6	1.4e-53
WP_005649164.1|697641_697965_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	46.7	4.4e-24
WP_011272012.1|697977_698502_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_005669116.1|698552_699239_+	DUF2625 domain-containing protein	NA	NA	NA	NA	NA
WP_011272011.1|699257_701117_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.3	2.3e-109
>prophage 4
NZ_LS483486	Haemophilus influenzae strain NCTC12194 chromosome 1	1915356	768114	772436	1915356		uncultured_virus(100.0%)	8	NA	NA
WP_048941374.1|768114_768321_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	49.3	9.6e-09
WP_005666693.1|768394_768601_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	1.1e-09
WP_005666693.1|768674_768881_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	1.1e-09
WP_005666693.1|768954_769161_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	1.1e-09
WP_005666693.1|769234_769441_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	1.1e-09
WP_005666693.1|769514_769721_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	1.1e-09
WP_005666693.1|770086_770293_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	1.1e-09
WP_105872984.1|770267_772436_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	51.7	3.6e-194
>prophage 5
NZ_LS483486	Haemophilus influenzae strain NCTC12194 chromosome 1	1915356	929802	1009035	1915356	tail,integrase,head,terminase,portal,holin,plate,protease,tRNA,capsid	Haemophilus_virus(59.57%)	77	924750:924767	966482:966499
924750:924767	attL	AATTGACCGCACTTTTTG	NA	NA	NA	NA
WP_172450357.1|929802_931023_+|protease	FtsH protease activity modulator HflK	protease	K4F6D5	Cronobacter_phage	24.3	2.4e-06
WP_005648629.1|931022_931910_+|protease	protease modulator HflC	protease	A0A2I7S9Z3	Vibrio_phage	26.6	1.8e-06
WP_075913399.1|931951_932386_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA	NA
WP_005648627.1|932547_933675_-	N-acetylneuraminate epimerase	NA	NA	NA	NA	NA
WP_005654416.1|933850_935701_-	sialic acid TRAP transporter substrate-binding protein SiaT	NA	NA	NA	NA	NA
WP_005654417.1|935765_936752_-	sialic acid TRAP transporter substrate-binding protein SiaP	NA	NA	NA	NA	NA
WP_050838148.1|937104_937791_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_005668146.1|937835_938738_+	N-acetylmannosamine kinase	NA	NA	NA	NA	NA
WP_005654433.1|938730_939597_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005654434.1|939607_940489_+	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
WP_005660891.1|940636_941449_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
WP_105905509.1|941585_942731_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_111722528.1|942926_944003_-	porin	NA	NA	NA	NA	NA
WP_005687959.1|944265_944730_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	52.9	5.0e-45
WP_105905507.1|944790_945558_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	35.3	1.1e-36
WP_014550581.1|946239_947754_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_038440907.1|947814_949023_-	sugar transporter	NA	NA	NA	NA	NA
WP_105905506.1|949022_950198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005649599.1|950201_950789_-	dCTP deaminase	NA	I4AZP2	Saccharomonospora_phage	40.5	2.8e-24
WP_005654445.1|950797_951439_-	uridine kinase	NA	A0A1V0SD85	Indivirus	35.2	4.5e-28
WP_005694416.1|951661_952978_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	80.7	3.1e-185
WP_005630160.1|953211_953742_+	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	36.9	3.7e-20
WP_111722531.1|954197_955211_-|integrase	site-specific integrase	integrase	Q94N03	Haemophilus_virus	98.2	8.5e-191
WP_111722533.1|955210_955804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111722535.1|955803_956010_-	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA	NA
WP_111722537.1|956010_956244_-	DUF4177 domain-containing protein	NA	A0A0A7NPW2	Enterobacteria_phage	56.6	1.9e-16
WP_111722538.1|956254_956548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111722540.1|956548_957124_-	phage repressor protein CI	NA	Q94N02	Haemophilus_virus	97.4	8.2e-106
WP_111722542.1|957241_957454_+	DNA-binding protein	NA	P79674	Haemophilus_phage	95.7	1.9e-28
WP_105897787.1|957515_957908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172450358.1|957965_958202_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005642993.1|958303_958672_+	hypothetical protein	NA	P79676	Haemophilus_phage	100.0	3.7e-67
WP_111722544.1|958671_958857_+	hypothetical protein	NA	Q775F8	Haemophilus_virus	98.4	5.2e-30
WP_015967401.1|958868_959150_+	hypothetical protein	NA	Q775F7	Haemophilus_virus	100.0	6.1e-46
WP_111722546.1|959227_961558_+	replication endonuclease	NA	Q94N00	Haemophilus_virus	97.0	0.0e+00
WP_061724366.1|961640_961877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061724365.1|961879_962386_+	pyrophosphatase	NA	A0A0M3LTD8	Mannheimia_phage	47.3	1.8e-27
WP_061724364.1|962396_962915_+	phage N-6-adenine-methyltransferase	NA	Q94MZ8	Haemophilus_virus	98.3	3.3e-98
WP_005667742.1|963012_963189_+	type II toxin-antitoxin system HicA family toxin	NA	D6R431	Bacillus_phage	67.8	4.5e-15
WP_005642973.1|963216_963618_+	type II toxin-antitoxin system HicB family antitoxin	NA	Q775F5	Haemophilus_virus	100.0	2.3e-70
WP_080359101.1|963644_963905_-	ogr/Delta-like zinc finger family protein	NA	Q1I103	Pasteurella_virus	59.3	1.4e-25
WP_111722548.1|963985_965023_-|portal	phage portal protein	portal	Q94MZ7	Haemophilus_virus	99.7	2.3e-199
WP_111722550.1|965012_966836_-|terminase	terminase ATPase subunit family protein	terminase	Q94MZ6	Haemophilus_virus	96.7	0.0e+00
966482:966499	attR	AATTGACCGCACTTTTTG	NA	NA	NA	NA
WP_048950705.1|967053_967947_+|capsid	GPO family capsid scaffolding protein	capsid	Q94MZ5	Haemophilus_virus	93.3	1.5e-143
WP_111722551.1|967950_968961_+|capsid	phage major capsid protein, P2 family	capsid	Q94MZ4	Haemophilus_virus	95.5	6.1e-181
WP_111722553.1|968974_969820_+|terminase	terminase endonuclease subunit	terminase	Q94MZ3	Haemophilus_virus	97.5	8.5e-152
WP_111722555.1|969812_970265_+|head	head completion/stabilization protein	head	Q94MZ2	Haemophilus_virus	96.7	9.1e-76
WP_111722557.1|970252_970735_+|tail	phage tail protein	tail	Q94MZ1	Haemophilus_virus	64.8	1.3e-56
WP_075985601.1|970731_971457_+	phage virion morphogenesis protein	NA	Q1I0Z5	Pasteurella_virus	33.2	2.5e-19
WP_005667729.1|971543_971702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111722559.1|971736_972867_+	DUF2586 domain-containing protein	NA	Q94MY9	Haemophilus_virus	97.1	3.0e-213
WP_005667727.1|972870_973323_+	DUF2597 family protein	NA	Q94MY8	Haemophilus_virus	100.0	6.9e-76
WP_005667726.1|973409_973646_+|holin	holin	holin	Q94MY7	Haemophilus_virus	100.0	4.8e-36
WP_110426678.1|973638_974199_+	lysozyme	NA	Q94MY6	Haemophilus_virus	96.6	1.3e-95
WP_105888544.1|974183_974531_+	hypothetical protein	NA	Q94MY5	Haemophilus_virus	99.1	3.0e-55
WP_005667723.1|974723_975032_+	hypothetical protein	NA	Q775G2	Haemophilus_virus	100.0	1.2e-47
WP_005667722.1|975040_975211_+	hypothetical protein	NA	Q1I0Y8	Pasteurella_virus	76.8	4.2e-18
WP_111722561.1|975220_977290_+|tail	phage tail tape measure protein	tail	Q94MY4	Haemophilus_virus	73.8	1.2e-279
WP_015979431.1|977293_977629_+	DUF2590 family protein	NA	Q94MY3	Haemophilus_virus	99.1	2.3e-52
WP_111722563.1|977621_978791_+|plate	baseplate J/gp47 family protein	plate	Q94MY2	Haemophilus_virus	97.6	4.4e-215
WP_015979433.1|978800_979325_+	hypothetical protein	NA	Q94MY1	Haemophilus_virus	100.0	4.8e-97
WP_111722565.1|982149_982752_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	93.0	1.2e-96
WP_105888046.1|982793_983561_+	hypothetical protein	NA	Q94MX8	Haemophilus_virus	96.9	8.9e-132
WP_105897782.1|983547_984174_+	hypothetical protein	NA	Q94MX7	Haemophilus_virus	100.0	2.0e-73
WP_111722567.1|984160_985762_+	hypothetical protein	NA	Q94MX6	Haemophilus_virus	90.1	1.6e-276
WP_005649617.1|986758_987316_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_005649619.1|987416_988019_-	peroxiredoxin C	NA	NA	NA	NA	NA
WP_011271894.1|988155_989343_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_038440912.1|989727_991089_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_005653606.1|991201_991708_+	DUF2301 domain-containing membrane protein	NA	NA	NA	NA	NA
WP_020910008.1|991757_992759_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA	NA
WP_005668509.1|992936_993707_-|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	A0A291ATS8	Pandoravirus	28.9	1.1e-17
WP_005668507.1|993706_994816_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_111722569.1|995210_997370_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	W6LLI2	Streptococcus_phage	28.9	5.1e-15
WP_042593621.1|1004190_1006422_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_005654237.1|1006782_1007412_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_042593622.1|1007745_1009035_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	52.1	3.3e-94
>prophage 6
NZ_LS483486	Haemophilus influenzae strain NCTC12194 chromosome 1	1915356	1294865	1379678	1915356	tail,integrase,head,lysis,terminase,portal,tRNA,protease,plate,capsid	Mannheimia_phage(45.95%)	79	1306596:1306619	1374666:1374689
WP_105905558.1|1294865_1296836_+|tRNA	tRNA(Met) cytidine acetyltransferase	tRNA	NA	NA	NA	NA
WP_011272700.1|1296832_1297006_+	DUF5363 domain-containing protein	NA	NA	NA	NA	NA
WP_038441069.1|1297107_1300548_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_011272698.1|1300600_1301992_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	31.2	7.2e-23
WP_005694317.1|1302185_1303076_+	acetyl-CoA carboxylase, carboxyltransferase subunit beta	NA	NA	NA	NA	NA
WP_172450360.1|1303077_1304382_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_005689857.1|1304669_1305350_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA	NA
1306596:1306619	attL	AAAAGTGCGGTGAAATTTCACCGC	NA	NA	NA	NA
WP_005687300.1|1309882_1311646_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
WP_005687298.1|1311782_1312259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005687296.1|1312494_1313301_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005659609.1|1313352_1314054_+	hydroxyacylglutathione hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	29.1	3.3e-08
WP_005659606.1|1314097_1314958_-	SAM-dependent methyltransferase TehB	NA	NA	NA	NA	NA
WP_042593951.1|1315070_1317119_-|tRNA	methionine--tRNA ligase	tRNA	A0A2K9V939	Bandra_megavirus	29.3	2.2e-60
WP_042593952.1|1317269_1318382_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_042593953.1|1318428_1319091_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_042593954.1|1319204_1319879_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA	NA
WP_005672181.1|1320586_1321597_-|portal	phage portal protein	portal	Q19UT6	Mannheimia_phage	61.9	2.1e-120
WP_105905561.1|1321606_1323382_-|terminase	terminase	terminase	A0A0M3LRV4	Mannheimia_phage	65.2	1.9e-217
WP_005672188.1|1323450_1323879_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0D4DCG1	Acinetobacter_phage	39.0	3.8e-15
WP_005672190.1|1323971_1324151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005672192.1|1324144_1324777_+	phage repressor protein	NA	D0UIM5	Aggregatibacter_phage	38.6	4.1e-34
WP_105905562.1|1324954_1325761_+|capsid	GPO family capsid scaffolding protein	capsid	A0A0M3LNM2	Mannheimia_phage	58.6	2.5e-60
WP_005672196.1|1325782_1326832_+|capsid	phage major capsid protein, P2 family	capsid	Q19UT3	Mannheimia_phage	51.9	5.7e-89
WP_005672198.1|1326843_1327494_+|terminase	terminase	terminase	Q19US0	Mannheimia_phage	46.0	5.3e-45
WP_006995358.1|1327786_1328293_+|head	head completion/stabilization protein	head	A0A0M3LNL8	Mannheimia_phage	51.0	1.3e-33
WP_005668467.1|1328292_1328502_+|tail	tail protein X	tail	NA	NA	NA	NA
WP_005672202.1|1328503_1328725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005653059.1|1328717_1329236_+	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.6	9.5e-37
WP_050848996.1|1329220_1329571_+	chemotaxis protein	NA	NA	NA	NA	NA
WP_005672208.1|1329745_1329961_+	TraR/DksA family transcriptional regulator	NA	A0A0M3LS11	Mannheimia_phage	47.9	1.1e-10
WP_005672210.1|1329957_1330428_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	44.6	2.8e-27
WP_105905564.1|1330427_1330886_+	phage virion morphogenesis protein	NA	A0A2H4J927	uncultured_Caudovirales_phage	51.1	3.5e-27
WP_105905565.1|1330863_1331136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105905566.1|1331205_1333941_+|tail	phage tail tape measure protein	tail	A0A0A7NRZ9	Enterobacteria_phage	36.3	2.2e-87
WP_005672227.1|1334041_1334599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005653088.1|1334607_1335036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005663413.1|1335139_1335739_+|plate	phage baseplate assembly protein V	plate	A0A0M3LPY9	Mannheimia_phage	65.5	1.6e-43
WP_005663412.1|1335740_1336079_+	GPW/gp25 family protein	NA	Q19UQ6	Mannheimia_phage	56.6	4.5e-19
WP_105905567.1|1336075_1336990_+|plate	baseplate J/gp47 family protein	plate	Q19UQ5	Mannheimia_phage	59.2	3.9e-94
WP_105905568.1|1336976_1337519_+|tail	phage tail protein I	tail	Q19UQ4	Mannheimia_phage	52.5	3.9e-49
WP_105905569.1|1337527_1340050_+|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	69.1	7.2e-255
WP_105905523.1|1340061_1340670_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	80.5	1.1e-79
WP_105905525.1|1341300_1342485_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A1S6KZY7	Salmonella_phage	48.2	1.7e-102
WP_105905526.1|1342488_1342995_+|tail	phage major tail tube protein	tail	Q19UP8	Mannheimia_phage	59.5	3.2e-53
WP_005672596.1|1343063_1343363_+|tail	phage tail assembly protein	tail	A4PE51	Ralstonia_virus	45.4	1.5e-13
WP_005633772.1|1343362_1343509_+|tail	GpE family phage tail protein	tail	E5E3Q0	Burkholderia_phage	65.0	2.2e-07
WP_059358232.1|1343636_1344074_+|tail	phage tail protein	tail	A0A0M3LQ18	Mannheimia_phage	56.6	5.4e-41
WP_005672606.1|1345311_1345701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005655087.1|1345760_1347521_-	DUF2326 domain-containing protein	NA	NA	NA	NA	NA
WP_005655083.1|1347765_1348527_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_005672613.1|1348554_1348794_-	excalibur calcium-binding domain-containing protein	NA	Q19UP2	Mannheimia_phage	52.3	1.9e-08
WP_005655079.1|1348790_1349279_-	hypothetical protein	NA	Q19UP0	Mannheimia_phage	44.3	7.1e-34
WP_005655077.1|1350121_1350346_+	helix-turn-helix domain-containing protein	NA	Q76H55	Enterobacteria_phage	55.9	7.0e-13
WP_005655075.1|1350400_1350643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105905527.1|1350677_1350971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005633752.1|1351051_1351207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005672622.1|1351423_1351927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005663364.1|1352114_1352402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105905528.1|1352492_1352705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048955229.1|1352773_1353154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005663359.1|1353157_1353400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005691706.1|1353525_1353834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105905529.1|1353843_1356030_+	replication endonuclease	NA	Q94N00	Haemophilus_virus	42.5	1.7e-164
WP_105905530.1|1356084_1356591_+	hypothetical protein	NA	A0A0M3LTD8	Mannheimia_phage	42.9	3.7e-25
WP_005652916.1|1356590_1356758_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_105905531.1|1356738_1358070_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A1B5FPC6	Escherichia_phage	33.0	5.4e-44
WP_105905532.1|1359318_1359774_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_005691699.1|1359790_1361278_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_042594613.1|1361289_1363779_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	26.0	3.5e-28
WP_042611785.1|1367945_1368797_-	FRG domain-containing protein	NA	NA	NA	NA	NA
WP_005628626.1|1372011_1372398_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_042593908.1|1373538_1374663_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_042593909.1|1374695_1375535_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	39.3	1.0e-40
1374666:1374689	attR	AAAAGTGCGGTGAAATTTCACCGC	NA	NA	NA	NA
WP_011272655.1|1375578_1376376_-	Zn-ribbon-containing protein	NA	NA	NA	NA	NA
WP_005631781.1|1376366_1376747_-	SufE family protein	NA	NA	NA	NA	NA
WP_011272654.1|1376743_1377943_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	32.0	2.0e-61
WP_032827530.1|1377944_1378427_-	thermonuclease family protein	NA	A0A0R6PHV6	Moraxella_phage	48.4	3.8e-32
WP_005650310.1|1378541_1378964_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005659557.1|1378982_1379678_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
>prophage 7
NZ_LS483486	Haemophilus influenzae strain NCTC12194 chromosome 1	1915356	1444274	1453008	1915356		Acinetobacter_phage(50.0%)	9	NA	NA
WP_074031221.1|1444274_1445279_-	phosphate ABC transporter substrate-binding protein PstS	NA	A0A222YW41	Synechococcus_phage	40.5	1.2e-51
WP_005650594.1|1445799_1446288_+	non-heme ferritin	NA	NA	NA	NA	NA
WP_005650592.1|1446307_1446805_+	non-heme ferritin	NA	NA	NA	NA	NA
WP_044345679.1|1447037_1447802_+	glycosyltransferase	NA	M1HQG0	Paramecium_bursaria_Chlorella_virus	29.6	6.8e-15
WP_014550748.1|1447907_1449464_+	anthranilate synthase component I	NA	A0A0B5J984	Pandoravirus	33.2	1.8e-22
WP_005688458.1|1449476_1450058_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	39.9	5.9e-35
WP_005662273.1|1450106_1450493_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_105905280.1|1450545_1451547_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	35.3	6.7e-47
WP_042599504.1|1451577_1453008_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	38.3	2.1e-33
>prophage 8
NZ_LS483486	Haemophilus influenzae strain NCTC12194 chromosome 1	1915356	1464332	1494978	1915356	integrase,terminase,capsid	Haemophilus_phage(22.58%)	47	1487087:1487103	1501183:1501199
WP_005650554.1|1464332_1464509_-	DUF2213 domain-containing protein	NA	Q7Y5U2	Haemophilus_phage	93.1	8.5e-22
WP_075913359.1|1464649_1465960_-|capsid	minor capsid protein	capsid	Q7Y5U5	Haemophilus_phage	78.3	5.3e-108
WP_011272621.1|1465859_1467194_-	DUF1073 domain-containing protein	NA	Q7Y5U6	Haemophilus_phage	84.2	2.1e-213
WP_011272620.1|1467195_1468539_-|terminase	PBSX family phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	54.4	2.8e-125
WP_011272619.1|1468525_1469038_-|terminase	terminase small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	39.2	1.0e-19
WP_011272618.1|1469082_1469361_+	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	66.2	6.5e-16
WP_105897882.1|1469362_1469644_-	hypothetical protein	NA	Q776X1	Haemophilus_phage	71.1	1.4e-29
WP_105897883.1|1469555_1469891_-	DUF2570 family protein	NA	Q7Y5U9	Haemophilus_phage	67.7	1.5e-27
WP_042594014.1|1469863_1470406_-	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	52.0	3.1e-46
WP_005688862.1|1470386_1470638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005688860.1|1470808_1470970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005688858.1|1471097_1471610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005688856.1|1472019_1472841_-	NYN domain-containing protein	NA	A0A0R6PGY5	Moraxella_phage	40.9	3.1e-34
WP_042594013.1|1473042_1473561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042594012.1|1473600_1473966_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA	NA
WP_042594011.1|1473967_1474555_-	recombination protein NinG	NA	A0A2I7RAC0	Vibrio_phage	48.0	8.3e-37
WP_105905511.1|1474647_1475064_-	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	84.7	2.1e-63
WP_005633909.1|1475100_1475325_-	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
WP_105905520.1|1475321_1475945_-	replication P	NA	D0UIL4	Aggregatibacter_phage	45.5	6.9e-34
WP_042593361.1|1476738_1476981_-	hypothetical protein	NA	M4NJW2	Sulfitobacter_phage	41.4	4.0e-06
WP_105905513.1|1477582_1477810_-	helix-turn-helix domain-containing protein	NA	D0UIL8	Aggregatibacter_phage	50.7	7.9e-12
WP_105905514.1|1477946_1478852_+	helix-turn-helix transcriptional regulator	NA	B6SCU0	Bacteriophage	40.8	1.4e-38
WP_105905515.1|1478867_1479962_+	DUF262 domain-containing protein	NA	A0A0R6PKN1	Moraxella_phage	37.1	4.0e-61
WP_105905516.1|1479961_1480621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105905517.1|1480577_1481609_-	DNA cytosine methyltransferase	NA	A0A0R6PG08	Moraxella_phage	66.4	2.8e-128
WP_065245325.1|1481996_1482167_-	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
WP_105905518.1|1482181_1482403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042593356.1|1483072_1483903_+	KilA-N domain-containing protein	NA	Q4ZC41	Staphylococcus_virus	52.2	3.4e-76
WP_105905519.1|1484222_1484837_+	Bro-N domain-containing protein	NA	Q7Y5X0	Haemophilus_phage	60.6	1.9e-36
WP_005651093.1|1484927_1485665_+	site-specific DNA-methyltransferase	NA	A0A0E3U2R2	Fusobacterium_phage	77.5	5.2e-113
WP_011272496.1|1485678_1486023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011272495.1|1486019_1486313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105905549.1|1486325_1487246_+	recombinase RecT	NA	A0A0M3LNU3	Mannheimia_phage	71.5	6.3e-116
1487087:1487103	attL	GGTTGTTGATGAAGCCA	NA	NA	NA	NA
WP_105905548.1|1487220_1487871_+	translocation protein TolB precursor	NA	A0A0M3LP90	Mannheimia_phage	70.6	1.0e-83
WP_042602683.1|1487870_1488305_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	36.2	1.3e-18
WP_111722577.1|1488366_1489146_+	hypothetical protein	NA	A0A2H4FRY7	Salmonella_phage	59.6	1.4e-36
WP_038440649.1|1489270_1490167_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	43.7	8.4e-57
WP_005668254.1|1490163_1490409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042593417.1|1490405_1490765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042599526.1|1490761_1491550_+	DNA methyltransferase	NA	U4KJA1	Streptococcus_phage	56.7	4.0e-79
WP_005668260.1|1491560_1492208_+	hypothetical protein	NA	A0A0M3LNU4	Mannheimia_phage	40.0	1.0e-08
WP_042593416.1|1492211_1492628_+	hypothetical protein	NA	W0B4E9	Acinetobacter_phage	39.2	3.5e-05
WP_042599527.1|1492707_1493196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042593414.1|1493185_1493509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042593413.1|1493501_1493774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005650488.1|1493815_1494019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105182752.1|1494090_1494978_-|integrase	site-specific integrase	integrase	A0A0M3LQN1	Mannheimia_phage	54.2	2.7e-84
1501183:1501199	attR	TGGCTTCATCAACAACC	NA	NA	NA	NA
>prophage 9
NZ_LS483486	Haemophilus influenzae strain NCTC12194 chromosome 1	1915356	1728686	1737195	1915356		uncultured_Caudovirales_phage(16.67%)	8	NA	NA
WP_011272434.1|1728686_1729370_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	2.3e-54
WP_011272433.1|1729362_1729788_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.0	2.3e-20
WP_005686506.1|1729788_1730424_+	7-carboxy-7-deazaguanine synthase QueE	NA	S4TZT1	uncultured_phage	30.3	8.7e-16
WP_042594456.1|1731033_1733214_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	5.1e-116
WP_005647473.1|1733303_1734305_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_005653671.1|1734319_1735207_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_005694258.1|1735216_1736209_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.0e-14
WP_038441344.1|1736211_1737195_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	1.4e-20
