assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900477945.1_45473_H02	NZ_LS483458	Haemophilus haemolyticus strain NCTC10839 chromosome 1	1	989604-990698	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1	DinG,cas3,WYL,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1	Type III-D,Type III-A,Type III-C,Type III-B	GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC,GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC,GTTTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC	37,37,37	0	0	NA	NA	NA:NA:NA	15,15,15	15	TypeIII-D,TypeIII-A,TypeIII-C,TypeIII-B	DinG,cas3,WYL,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1	NA|155aa|up_8|NZ_LS483458.1_981117_981582_-,NA	NA|108aa|up_9|NZ_LS483458.1_980693_981017_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|155aa|up_8|NZ_LS483458.1_981117_981582_-	NA	NA|393aa|up_7|NZ_LS483458.1_981565_982744_-	cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like	NA|269aa|up_6|NZ_LS483458.1_982797_983604_-	cd01071, PBP2_PhnD_like, Substrate binding domain of phosphonate uptake system-like, a member of the type 2 periplasmic-binding fold superfamily	NA|376aa|up_5|NZ_LS483458.1_983617_984745_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|263aa|up_4|NZ_LS483458.1_984856_985645_-	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|170aa|up_3|NZ_LS483458.1_985699_986209_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|460aa|up_2|NZ_LS483458.1_986311_987691_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|289aa|up_1|NZ_LS483458.1_987766_988633_-	COG2833, COG2833, Uncharacterized protein conserved in bacteria [Function unknown]	NA|287aa|up_0|NZ_LS483458.1_988643_989504_-	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism]	cas10|750aa|down_0|NZ_LS483458.1_992388_994638_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|156aa|down_1|NZ_LS483458.1_994647_995115_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|234aa|down_2|NZ_LS483458.1_995107_995809_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|328aa|down_3|NZ_LS483458.1_995818_996802_+	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm5gr7|517aa|down_4|NZ_LS483458.1_996798_998349_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas6|307aa|down_5|NZ_LS483458.1_998348_999269_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	csx16|97aa|down_6|NZ_LS483458.1_999326_999617_+	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	csx1|381aa|down_7|NZ_LS483458.1_999626_1000769_+	pfam09002, DUF1887, Domain of unknown function (DUF1887)	csx1|403aa|down_8|NZ_LS483458.1_1000768_1001977_+	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cas2|95aa|down_9|NZ_LS483458.1_1002559_1002844_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2
GCF_900477945.1_45473_H02	NZ_LS483458	Haemophilus haemolyticus strain NCTC10839 chromosome 1	2	1004412-1005362	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1	DinG,cas3,WYL,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1	Type III-D,Type III-A,Type III-C,Type III-B	GTCTCAATCCCTTTGGAACAGGGCAATGTCTTTCGAC,GTCGAAAGACATGCCCTGTTCCAAAGGGATTGAGAC,AANNNNNTGCCCTGTTCCAAAGGGATTGAGAC	37,36,32	0	0	NA	NA	NA:NA:NA	12,12,13	13	TypeIII-D,TypeIII-A,TypeIII-C,TypeIII-B	DinG,cas3,WYL,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1	NA,NA	csm3gr7|234aa|up_9|NZ_LS483458.1_995107_995809_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|328aa|up_8|NZ_LS483458.1_995818_996802_+	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm5gr7|517aa|up_7|NZ_LS483458.1_996798_998349_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas6|307aa|up_6|NZ_LS483458.1_998348_999269_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	csx16|97aa|up_5|NZ_LS483458.1_999326_999617_+	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	csx1|381aa|up_4|NZ_LS483458.1_999626_1000769_+	pfam09002, DUF1887, Domain of unknown function (DUF1887)	csx1|403aa|up_3|NZ_LS483458.1_1000768_1001977_+	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cas2|95aa|up_2|NZ_LS483458.1_1002559_1002844_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|357aa|up_1|NZ_LS483458.1_1002852_1003923_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|97aa|up_0|NZ_LS483458.1_1003932_1004223_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|708aa|down_0|NZ_LS483458.1_1005485_1007609_-	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|98aa|down_1|NZ_LS483458.1_1007833_1008127_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|140aa|down_2|NZ_LS483458.1_1008110_1008530_-	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|198aa|down_3|NZ_LS483458.1_1008598_1009192_-	PRK14150, PRK14150, heat shock protein GrpE; Provisional	NA|297aa|down_4|NZ_LS483458.1_1009292_1010183_+	PRK02231, ppnK, NAD(+) kinase	NA|559aa|down_5|NZ_LS483458.1_1010294_1011971_+	PRK10869, PRK10869, recombination and repair protein; Provisional	NA|982aa|down_6|NZ_LS483458.1_1011991_1014937_-	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA|312aa|down_7|NZ_LS483458.1_1014942_1015878_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|630aa|down_8|NZ_LS483458.1_1015885_1017775_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|457aa|down_9|NZ_LS483458.1_1017775_1019146_-	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional
GCF_900477945.1_45473_H02	NZ_LS483458	Haemophilus haemolyticus strain NCTC10839 chromosome 1	3	1180600-1180748	3	CRISPRCasFinder	no	DEDDh	DinG,cas3,WYL,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1	Unclear	TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	49	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,WYL,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1	NA|128aa|up_8|NZ_LS483458.1_1169634_1170018_+,NA	NA|278aa|up_9|NZ_LS483458.1_1168739_1169573_+	PRK11103, PRK11103, PTS mannose transporter subunit IID	NA|128aa|up_8|NZ_LS483458.1_1169634_1170018_+	NA	NA|445aa|up_7|NZ_LS483458.1_1170087_1171422_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|291aa|up_6|NZ_LS483458.1_1171598_1172471_-	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|786aa|up_5|NZ_LS483458.1_1172638_1174996_-	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B	NA|118aa|up_4|NZ_LS483458.1_1175002_1175356_-	COG3112, COG3112, Uncharacterized protein conserved in bacteria [Function unknown]	NA|115aa|up_3|NZ_LS483458.1_1175357_1175702_-	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional	NA|269aa|up_2|NZ_LS483458.1_1175838_1176645_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|864aa|up_1|NZ_LS483458.1_1176738_1179330_+	PRK01759, glnD, bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA|356aa|up_0|NZ_LS483458.1_1179404_1180472_+	TIGR02380, ECA_wecA, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase	DEDDh|183aa|down_0|NZ_LS483458.1_1180869_1181418_-	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|347aa|down_1|NZ_LS483458.1_1181488_1182529_+	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA	NA|86aa|down_2|NZ_LS483458.1_1182689_1182947_+	PRK10850, PRK10850, phosphocarrier protein Hpr	NA|576aa|down_3|NZ_LS483458.1_1183025_1184753_+	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI	NA|167aa|down_4|NZ_LS483458.1_1184813_1185314_+	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional	NA|400aa|down_5|NZ_LS483458.1_1185407_1186607_+	cd07011, cupin_PMI_type_I_N, type I phosphomannose isomerase in eukaryotes and bacteria, N-terminal cupin domain	NA|306aa|down_6|NZ_LS483458.1_1186686_1187604_+	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|152aa|down_7|NZ_LS483458.1_1187687_1188143_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|256aa|down_8|NZ_LS483458.1_1188237_1189005_-	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional	NA|255aa|down_9|NZ_LS483458.1_1189128_1189893_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional
GCF_900477945.1_45473_H02	NZ_LS483458	Haemophilus haemolyticus strain NCTC10839 chromosome 1	4	1653543-1653817	3	PILER-CR	no		DinG,cas3,WYL,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1	Orphan	GAATTCTTAACCGCACTTAAAGGTGAAAAAGGTGAGAACGGTACTAACGGTAAATCTGC	59	0	0	NA	NA	NA	2	2	Orphan	DinG,cas3,WYL,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,cas2,cas1	NA,NA	NA|122aa|up_9|NZ_LS483458.1_1640692_1641058_-	TIGR00156, Uncharacterized_protein_HI_1709, TIGR00156 family protein	NA|296aa|up_8|NZ_LS483458.1_1641189_1642077_-	pfam04261, Dyp_perox, Dyp-type peroxidase family	NA|636aa|up_7|NZ_LS483458.1_1642258_1644166_+	COG0672, FTR1, High-affinity Fe2+/Pb2+ permease [Inorganic ion transport and metabolism]	NA|174aa|up_6|NZ_LS483458.1_1644193_1644715_+	COG3470, Tpd, Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]	NA|472aa|up_5|NZ_LS483458.1_1644811_1646227_+	COG4393, COG4393, Predicted membrane protein [Function unknown]	NA|447aa|up_4|NZ_LS483458.1_1646229_1647570_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|385aa|up_3|NZ_LS483458.1_1647556_1648711_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|225aa|up_2|NZ_LS483458.1_1648751_1649426_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|161aa|up_1|NZ_LS483458.1_1649412_1649895_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|104aa|up_0|NZ_LS483458.1_1649898_1650210_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|365aa|down_0|NZ_LS483458.1_1654706_1655801_-	TIGR02283, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase	NA|268aa|down_1|NZ_LS483458.1_1655809_1656613_-	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis	NA|294aa|down_2|NZ_LS483458.1_1656622_1657504_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|258aa|down_3|NZ_LS483458.1_1657515_1658289_-	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]	NA|354aa|down_4|NZ_LS483458.1_1658300_1659362_-	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins	NA|305aa|down_5|NZ_LS483458.1_1659363_1660278_-	pfam07922, Glyco_transf_52, Glycosyltransferase family 52	NA|402aa|down_6|NZ_LS483458.1_1660274_1661480_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|248aa|down_7|NZ_LS483458.1_1661613_1662357_+	COG1434, COG1434, Uncharacterized conserved protein [Function unknown]	NA|757aa|down_8|NZ_LS483458.1_1662456_1664727_+	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|153aa|down_9|NZ_LS483458.1_1664814_1665273_-	PRK11544, hycI, hydrogenase 3 maturation protease; Provisional
