The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483451	Streptococcus pneumoniae strain 4041STDY6836166 chromosome 1	2200529	4185	67381	2200529	integrase,terminase,protease,tRNA,tail,capsid,transposase,portal,holin,head	Streptococcus_phage(90.0%)	70	NA	NA
WP_111702379.1|4185_4755_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_111702380.1|4755_8265_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_001234978.1|8322_8589_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_000041909.1|8581_8950_+	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_001224760.1|9069_10338_+	serine hydrolase	NA	NA	NA	NA	NA
WP_001208988.1|10334_11612_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A7K9Y8	Acanthocystis_turfacea_chlorella_virus	24.1	2.5e-06
WP_000892184.1|11615_12158_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	28.9	2.7e-10
WP_111702381.1|12173_14132_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	H8ZJI5	Ostreococcus_tauri_virus	45.8	3.2e-109
WP_000588897.1|14253_14733_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000939546.1|21560_21797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205044.1|22027_23314_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	37.1	2.7e-72
WP_000876727.1|23555_24704_-|integrase	site-specific integrase	integrase	A0A1S5SCM1	Streptococcus_phage	100.0	1.2e-217
WP_000122589.1|24892_25816_-	3'-5' exoribonuclease	NA	A0A1S5SFA9	Streptococcus_phage	100.0	7.8e-175
WP_054365451.1|25828_26212_-	peptidase	NA	A0A1S5SEU6	Streptococcus_phage	99.2	2.5e-66
WP_050099391.1|26224_26590_-	helix-turn-helix transcriptional regulator	NA	A0A141E189	Streptococcus_phage	94.2	9.0e-58
WP_111702382.1|26946_28236_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_000041097.1|28740_28962_-	hypothetical protein	NA	A0A1S5SEP1	Streptococcus_phage	100.0	2.1e-30
WP_000389576.1|29080_29227_+	hypothetical protein	NA	A0A1S5SEU4	Streptococcus_phage	100.0	3.6e-18
WP_000032098.1|29238_29442_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SFD8	Streptococcus_phage	100.0	1.6e-27
WP_061742663.1|29584_30301_+	ORF6C domain-containing protein	NA	A0A1S5SCW5	Streptococcus_phage	99.2	2.0e-133
WP_000370958.1|30313_30571_+	hypothetical protein	NA	A0A1S5SFD5	Streptococcus_phage	100.0	1.2e-43
WP_000462827.1|30656_30977_+	hypothetical protein	NA	A0A1S5S8E5	Streptococcus_phage	100.0	5.6e-48
WP_111702384.1|30992_31283_+	hypothetical protein	NA	A0A1S5S951	Streptococcus_phage	82.3	2.9e-35
WP_061742662.1|31301_32126_+	phage replisome organizer N-terminal domain-containing protein	NA	A0A1S5SFJ6	Streptococcus_phage	99.6	7.0e-143
WP_000511761.1|32113_32272_+	hypothetical protein	NA	A0A1S5SFB9	Streptococcus_phage	96.2	9.9e-22
WP_061742661.1|32265_33036_+	ATP-binding protein	NA	E8ZDM8	Streptococcus_phage	98.8	2.0e-139
WP_000470343.1|33050_33245_+	hypothetical protein	NA	A0A1S5SGB5	Streptococcus_phage	100.0	1.6e-29
WP_000891972.1|33244_33472_+	hypothetical protein	NA	A0A1S5SGA7	Streptococcus_phage	100.0	2.3e-40
WP_000233201.1|33598_33763_+	hypothetical protein	NA	A0A141E182	Streptococcus_phage	100.0	1.4e-23
WP_001105097.1|33752_33962_+	hypothetical protein	NA	A0A1S5SAP7	Streptococcus_phage	100.0	8.5e-29
WP_000969675.1|33933_34251_+	hypothetical protein	NA	A0A1S5SBL6	Streptococcus_phage	100.0	7.8e-58
WP_061742660.1|34252_34735_+	DUF1642 domain-containing protein	NA	A0A1S5S7M7	Streptococcus_phage	77.5	4.8e-67
WP_061742659.1|34734_35022_+	hypothetical protein	NA	A0A1S5SB07	Streptococcus_phage	93.7	2.0e-44
WP_050198917.1|35052_36135_+	DNA cytosine methyltransferase	NA	A0A141DZC2	Streptococcus_phage	100.0	1.0e-194
WP_001177094.1|36296_36650_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SCQ5	Streptococcus_phage	100.0	1.4e-63
WP_061742658.1|36631_37096_+	hypothetical protein	NA	A0A1S5SCN9	Streptococcus_phage	99.4	1.4e-84
WP_001028147.1|37204_37747_+|integrase	site-specific integrase	integrase	A0A1S5SCL7	Streptococcus_phage	100.0	9.8e-101
WP_000143217.1|38176_38494_+	HNH endonuclease	NA	A0A1S5S7M8	Streptococcus_phage	100.0	1.5e-56
WP_000601032.1|38630_39116_+	hypothetical protein	NA	A0A1S5S7N0	Streptococcus_phage	99.4	6.5e-80
WP_000229998.1|39108_40821_+|terminase	terminase	terminase	A0A1S5S7N1	Streptococcus_phage	100.0	0.0e+00
WP_086835374.1|40829_41972_+|portal	phage portal protein	portal	A0A1S5S7N3	Streptococcus_phage	100.0	2.7e-217
WP_000413203.1|42018_42561_+|head,protease	HK97 family phage prohead protease	head,protease	A0A1S5SCT6	Streptococcus_phage	100.0	1.2e-98
WP_000855225.1|42575_43829_+|capsid	phage major capsid protein	capsid	A0A1S5S7P4	Streptococcus_phage	99.8	2.4e-227
WP_000154006.1|43854_44190_+	hypothetical protein	NA	A0A1S5SCM7	Streptococcus_phage	100.0	4.1e-57
WP_000842790.1|44186_44492_+|head,tail	head-tail adaptor protein	head,tail	A0A1S5SCR5	Streptococcus_phage	100.0	9.5e-37
WP_001074487.1|44491_44839_+	hypothetical protein	NA	A0A1S5SCP8	Streptococcus_phage	100.0	3.5e-59
WP_000534622.1|44825_45170_+	HK97 gp10 family phage protein	NA	A0A1S5S7N7	Streptococcus_phage	100.0	1.2e-59
WP_111702385.1|45183_45852_+|tail	phage tail protein	tail	A0A1S5S7P2	Streptococcus_phage	98.2	3.3e-122
WP_050239337.1|45853_46330_+	hypothetical protein	NA	A0A1S5S7P0	Streptococcus_phage	100.0	1.7e-85
WP_061742656.1|46516_49255_+|tail	phage tail tape measure protein	tail	A0A1S5S7N6	Streptococcus_phage	99.9	2.1e-292
WP_000161559.1|49251_49974_+|tail	phage tail protein	tail	A0A1S5S7P1	Streptococcus_phage	100.0	2.8e-135
WP_111702386.1|49974_57222_+|tail	tail fiber domain-containing protein	tail	A0A1S5S9I2	Streptococcus_phage	84.6	0.0e+00
WP_001091107.1|57315_57519_+	hypothetical protein	NA	A0A1S5S819	Streptococcus_phage	100.0	3.8e-26
WP_000852249.1|57521_57872_+	hypothetical protein	NA	A0A060QMT7	Streptococcus_phage	100.0	4.7e-64
WP_001165344.1|57881_58298_+|holin	phage holin family protein	holin	A0A1S5SCE8	Streptococcus_phage	100.0	1.9e-67
WP_001186206.1|58301_58634_+|holin	phage holin	holin	A0A1S5S9U3	Streptococcus_phage	100.0	1.9e-51
WP_111702387.1|58637_59594_+	N-acetylmuramoyl-L-alanine amidase LytA	NA	X2KUG4	Streptococcus_phage	99.1	3.7e-143
WP_001209433.1|59854_60034_-	hypothetical protein	NA	Q3BLW4	Phage_SK137	96.6	3.5e-23
WP_168960780.1|60175_60325_-	hypothetical protein	NA	C5J952	Streptococcus_phage	93.9	2.0e-16
WP_111702388.1|60605_61073_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_111702389.1|61288_62422_-|integrase	site-specific integrase	integrase	U4KJ82	Streptococcus_phage	98.9	2.8e-206
WP_061817018.1|62476_63547_-	type I restriction enzyme HsdR N-terminal domain-containing protein	NA	A0A1S5SAB0	Streptococcus_phage	97.5	6.5e-181
WP_000285962.1|63956_64220_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5S8E8	Streptococcus_phage	100.0	1.2e-43
WP_111702390.1|64219_64453_-	hypothetical protein	NA	A0A1S5S8D5	Streptococcus_phage	93.5	7.5e-34
WP_000464160.1|64452_64821_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SBE7	Streptococcus_phage	100.0	1.4e-63
WP_000142893.1|65235_65475_-	hypothetical protein	NA	A0A141DZS0	Streptococcus_phage	100.0	4.7e-39
WP_111702391.1|65539_65731_+	DNA-binding protein	NA	A0A141DZR9	Streptococcus_phage	98.4	1.9e-27
WP_001247549.1|65753_65957_+	hypothetical protein	NA	A0A141E1R6	Streptococcus_phage	95.5	1.3e-29
WP_000024181.1|66111_66279_-	YjzC family protein	NA	NA	NA	NA	NA
WP_000701987.1|66937_67381_+	dUTP diphosphatase	NA	Q332E8	Clostridium_botulinum_C_phage	48.0	3.3e-30
>prophage 2
NZ_LS483451	Streptococcus pneumoniae strain 4041STDY6836166 chromosome 1	2200529	147521	171761	2200529	bacteriocin,tRNA	Planktothrix_phage(50.0%)	25	NA	NA
WP_001230165.1|147521_147809_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000724257.1|147860_149969_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571330.1|149965_150607_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
WP_001038474.1|150812_151619_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_099516442.1|151584_152055_+	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_050255660.1|152344_152665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044814690.1|153428_153797_+|bacteriocin	SPH_0218 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000909532.1|153804_154017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000513492.1|154495_154741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050199728.1|154897_155956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001849786.1|156270_157248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111702405.1|157623_157998_+|bacteriocin	SPH_0224 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_111702406.1|158205_159108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050259657.1|159163_159517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061649505.1|159513_160242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000770319.1|161377_161617_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	54.1	4.2e-16
WP_012291582.1|161631_161949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111702409.1|162167_164330_+	pneumococcal surface protein A	NA	NA	NA	NA	NA
WP_001282931.1|164730_165852_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000193613.1|165992_166448_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000220943.1|166457_168371_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_000331980.1|168723_170403_-	ribonuclease J	NA	NA	NA	NA	NA
WP_000639577.1|170404_170638_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_000974047.1|171421_171574_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
WP_000180803.1|171575_171761_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibA	bacteriocin	NA	NA	NA	NA
>prophage 3
NZ_LS483451	Streptococcus pneumoniae strain 4041STDY6836166 chromosome 1	2200529	351095	400313	2200529	transposase,holin,protease	Streptococcus_phage(27.27%)	40	NA	NA
WP_061817049.1|351095_353201_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.6	4.5e-117
WP_000032550.1|353602_354085_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_050117956.1|354179_355664_-	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_111702432.1|355816_357427_+	alpha-glucosidase	NA	NA	NA	NA	NA
WP_111702433.1|357875_359273_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_111702434.1|359423_360869_+	LCP family protein	NA	A0A1X9I5X1	Streptococcus_phage	59.9	2.3e-133
WP_061459527.1|360870_361602_+	tyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_061459526.1|361610_362303_+	capsular polysaccharide biosynthesis protein CpsC	NA	A0A1X9I5E1	Streptococcus_phage	58.1	1.4e-64
WP_061459525.1|362312_362996_+	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	60.1	1.2e-66
WP_061459524.1|363011_364379_+	sugar transferase	NA	NA	NA	NA	NA
WP_111702435.1|364409_365582_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_061459522.1|365578_366850_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_061459521.1|366839_367526_+	acyltransferase	NA	NA	NA	NA	NA
WP_061459520.1|367537_368443_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_111702436.1|369133_370396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061459518.1|370382_371543_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_061459517.1|371560_373000_+	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_044811455.1|373009_373825_+	LicD family protein	NA	NA	NA	NA	NA
WP_044811456.1|373852_374245_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	43.0	8.8e-19
WP_044811458.1|374402_375272_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	63.2	9.2e-101
WP_111702437.1|375272_375866_+	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	H9NC63	Sphingomonas_phage	33.1	3.0e-10
WP_000141499.1|375878_376928_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.5	8.3e-72
WP_061459516.1|376993_377845_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.4	1.5e-26
WP_000272534.1|377907_378354_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_001809483.1|378946_379105_+|transposase	transposase domain-containing protein	transposase	NA	NA	NA	NA
WP_061459514.1|379303_381286_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_061459513.1|381586_386890_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_061459512.1|387056_389216_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_000248787.1|389212_389809_-	Holliday junction resolvase RecU	NA	A0A1L2JY30	Aeribacillus_phage	33.9	8.7e-18
WP_000179549.1|389874_390402_+	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_069287936.1|390471_390801_+	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_000711393.1|391286_392444_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_069287937.1|392456_393851_+	mid-cell-anchored protein MapZ	NA	NA	NA	NA	NA
WP_069287938.1|393926_395351_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	2.1e-41
WP_111702438.1|395362_396052_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_111702439.1|396149_397103_+|holin	choline-binding protein CbpC	holin	NA	NA	NA	NA
WP_000765667.1|397220_398453_-	MFS transporter	NA	NA	NA	NA	NA
WP_025173614.1|398463_398916_-	lanthionine synthetase	NA	NA	NA	NA	NA
WP_078464597.1|399033_399459_-	lantibiotic-modifying protein	NA	NA	NA	NA	NA
WP_000619582.1|399983_400313_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_LS483451	Streptococcus pneumoniae strain 4041STDY6836166 chromosome 1	2200529	485727	545627	2200529	bacteriocin,tRNA,protease	Klosneuvirus(28.57%)	50	NA	NA
WP_000181374.1|485727_486231_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000185835.1|486683_487247_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_172449521.1|487260_487887_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000867290.1|487914_488304_+	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
WP_111702457.1|488308_488758_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_000418402.1|488885_489473_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_000105242.1|489849_491457_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	8.9e-142
WP_000026645.1|492015_493647_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_111702458.1|493939_498853_+	bacterial Ig-like domain-containing protein	NA	NA	NA	NA	NA
WP_001096743.1|498942_500139_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000119917.1|500274_500802_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000659547.1|500878_501235_+	transcriptional repressor GlnR	NA	NA	NA	NA	NA
WP_001122904.1|501271_502618_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001808898.1|502713_502833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410534.1|502797_502947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111702459.1|503398_504679_+	restriction endonuclease subunit S	NA	A0A1V0SKS6	Klosneuvirus	29.2	1.5e-11
WP_000651177.1|504735_505533_+	tyrosine-type DNA invertase PsrA	NA	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
WP_000240089.1|505543_506152_+	restriction endonuclease subunit S	NA	A0A1V0SLK8	Klosneuvirus	30.1	8.6e-13
WP_111702460.1|506105_507647_-	restriction endonuclease subunit S	NA	A0A1V0SKS6	Klosneuvirus	29.2	1.9e-11
WP_000029036.1|507646_509110_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_050221197.1|509122_511456_-	DEAD/DEAH box helicase family protein	NA	A0A097BY72	Enterococcus_phage	28.9	9.9e-25
WP_000255768.1|512732_513767_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_000651177.1|516470_517268_-	tyrosine-type DNA invertase PsrA	NA	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
WP_111702461.1|517324_518875_-	restriction endonuclease subunit S	NA	A0A1V0SKS6	Klosneuvirus	29.2	1.9e-11
WP_000029036.1|518874_520338_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_050221197.1|520350_522684_-	DEAD/DEAH box helicase family protein	NA	A0A097BY72	Enterococcus_phage	28.9	9.9e-25
WP_000550235.1|523362_523800_+	DUF2812 domain-containing protein	NA	NA	NA	NA	NA
WP_000255768.1|523963_524998_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_000046031.1|525024_525549_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_000034662.1|526028_527852_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
WP_001066295.1|528609_529746_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.3	2.4e-24
WP_000777760.1|530125_530413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001278301.1|530422_530833_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
WP_000889919.1|530900_531632_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	4.1e-25
WP_000653771.1|531628_532678_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000132575.1|532845_533175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061390077.1|533450_533789_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_061390076.1|533793_534531_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001017646.1|534544_535885_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000358815.1|535955_536084_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
WP_061390075.1|536140_537502_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_000205170.1|537512_539666_-	peptide cleavage/export ABC transporter BlpA	NA	W8CYL7	Bacillus_phage	27.9	6.3e-42
WP_001093272.1|539946_540150_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000411016.1|540467_540671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111702462.1|542627_542882_+|bacteriocin	two-peptide bacteriocin subunit BlpM	bacteriocin	NA	NA	NA	NA
WP_001099492.1|542897_543101_+|bacteriocin	two-peptide bacteriocin subunit BlpN	bacteriocin	NA	NA	NA	NA
WP_001818346.1|543344_543494_+|bacteriocin	bacteriocin-like peptide BlpO	bacteriocin	NA	NA	NA	NA
WP_000346296.1|543597_543717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000877381.1|544502_544886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000760529.1|544937_545627_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 5
NZ_LS483451	Streptococcus pneumoniae strain 4041STDY6836166 chromosome 1	2200529	910622	922365	2200529	holin,transposase	Streptococcus_phage(88.89%)	11	NA	NA
WP_111702528.1|910622_912506_+|holin	phosphorylcholine esterase CbpE	holin	Q332B9	Clostridium_botulinum_C_phage	22.9	4.3e-10
WP_111702529.1|912647_914375_-|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_111702530.1|914687_915818_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	7.2e-114
WP_111702531.1|915827_917090_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.0	5.5e-139
WP_111702532.1|917093_917891_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.9	2.9e-61
WP_000033362.1|918109_918748_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	68.1	9.8e-76
WP_061366014.1|918744_919635_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.7	4.9e-73
WP_000358228.1|919674_919992_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_001166880.1|919994_920864_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	76.1	2.7e-116
WP_111702533.1|921090_921609_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_111702534.1|921717_922365_+	replication initiator protein A	NA	A0A2P0VK56	Streptococcus_phage	33.7	2.0e-12
>prophage 6
NZ_LS483451	Streptococcus pneumoniae strain 4041STDY6836166 chromosome 1	2200529	1158466	1229732	2200529	bacteriocin,holin,tRNA,protease	Bacillus_phage(16.67%)	60	NA	NA
WP_000985089.1|1158466_1158769_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_061747165.1|1159021_1159900_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_001002635.1|1159909_1161184_-	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
WP_000254802.1|1162686_1163484_-	formate/nitrite transporter family protein	NA	NA	NA	NA	NA
WP_000078846.1|1163727_1164471_-	sortase SrtA	NA	NA	NA	NA	NA
WP_001152996.1|1164470_1166939_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.5	2.7e-105
WP_000204727.1|1167132_1168119_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_044788589.1|1169149_1169404_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_000208080.1|1169405_1169648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001289493.1|1169738_1170548_-	MBL fold metallo-hydrolase	NA	A0A0C5AFC1	Paenibacillus_phage	39.0	1.8e-34
WP_000886210.1|1170549_1171899_-	cell wall metabolism sensor histidine kinase VicK	NA	W8CYF6	Bacillus_phage	34.6	1.8e-34
WP_000722076.1|1171891_1172596_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.8	2.8e-39
WP_000886145.1|1172650_1173826_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_111702564.1|1174150_1175821_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_061371267.1|1176050_1176740_+	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
WP_001284128.1|1176751_1177303_+	phosphopantothenoylcysteine decarboxylase	NA	A0A068EHP1	Penguinpox_virus	37.6	3.1e-25
WP_061456317.1|1177286_1177850_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_111702565.1|1178026_1178554_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_020900927.1|1178565_1179081_+	transcription repressor NadR	NA	NA	NA	NA	NA
WP_111702566.1|1179077_1179545_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_000639842.1|1180071_1180635_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000607033.1|1180644_1182633_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
WP_000792125.1|1182709_1183663_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000726272.1|1183835_1186001_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001096316.1|1186000_1186741_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.1	2.0e-32
WP_111702567.1|1186889_1188377_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	33.1	7.6e-71
WP_111702568.1|1188422_1189700_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_111702569.1|1189703_1190522_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_111702570.1|1190521_1191316_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_111702571.1|1191312_1194852_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
WP_000661503.1|1194842_1195541_-	ribonuclease III	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	33.3	1.1e-24
WP_101504270.1|1195858_1196845_-	GMP reductase	NA	G3MBI2	Bacillus_virus	72.5	8.2e-138
WP_172449526.1|1197019_1198336_-	McrC family protein	NA	NA	NA	NA	NA
WP_001042421.1|1198322_1200254_-	McrB family protein	NA	K4I1H4	Acidithiobacillus_phage	33.7	1.8e-16
WP_000929149.1|1201208_1201568_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_000762426.1|1201571_1201841_-	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_111702572.1|1201837_1202875_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_111702573.1|1203999_1204656_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
WP_111702574.1|1204699_1205332_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_001237219.1|1205424_1205784_-	YbaN family protein	NA	NA	NA	NA	NA
WP_050313807.1|1205889_1207977_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	37.5	1.1e-104
WP_111702575.1|1208143_1209187_-	TIGR00341 family protein	NA	NA	NA	NA	NA
WP_000705306.1|1210081_1210930_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	39.5	4.2e-34
WP_000643970.1|1211025_1211715_-	NTP transferase domain-containing protein	NA	A0A127AW70	Bacillus_phage	45.0	3.4e-05
WP_000837609.1|1211726_1212605_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000411203.1|1212594_1213464_-|holin	choline kinase LicA	holin	NA	NA	NA	NA
WP_101504439.1|1213480_1214503_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000638502.1|1214507_1215215_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000835917.1|1215549_1217037_+	type IV teichoic acid flippase TacF	NA	NA	NA	NA	NA
WP_000811992.1|1217046_1217850_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	27.1	5.3e-10
WP_001199653.1|1217851_1218661_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	9.1e-10
WP_111702576.1|1218935_1222112_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_000166701.1|1222424_1223504_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.9	6.3e-59
WP_044788902.1|1223553_1224477_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	31.4	1.1e-24
WP_000850024.1|1224495_1225017_-	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_000244451.1|1225227_1225857_-	endonuclease III	NA	NA	NA	NA	NA
WP_000773231.1|1225856_1226399_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_061366481.1|1226568_1226886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172449502.1|1227124_1228684_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	27.0	2.1e-10
WP_000895725.1|1228832_1229732_-|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
>prophage 7
NZ_LS483451	Streptococcus pneumoniae strain 4041STDY6836166 chromosome 1	2200529	1345453	1351382	2200529		Streptococcus_phage(50.0%)	9	NA	NA
WP_001272941.1|1345453_1346065_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_111702598.1|1346109_1346838_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000272304.1|1347027_1347939_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.5	1.0e-89
WP_000926599.1|1348004_1348229_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000590970.1|1348306_1349050_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
WP_001103449.1|1349049_1349850_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000889093.1|1350007_1350364_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_001170347.1|1350357_1350888_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	54.3	1.4e-46
WP_000405832.1|1350887_1351382_-	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.1	1.9e-42
>prophage 8
NZ_LS483451	Streptococcus pneumoniae strain 4041STDY6836166 chromosome 1	2200529	1415136	1488291	2200529	terminase,integrase,protease,tRNA,tail,capsid,portal,holin	Streptococcus_phage(83.87%)	86	1422632:1422663	1492674:1492705
WP_061766525.1|1415136_1415886_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000689596.1|1415939_1416299_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_111702621.1|1416300_1417701_-	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	43.5	3.2e-26
WP_000068664.1|1417995_1418235_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_000609607.1|1418266_1418737_-	single-stranded DNA-binding protein SsbA	NA	A0A2H4J1H8	uncultured_Caudovirales_phage	67.7	2.4e-55
WP_001151785.1|1418748_1419039_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_161801414.1|1419191_1420538_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	31.2	6.3e-56
WP_061642626.1|1420553_1420919_-	VOC family protein	NA	NA	NA	NA	NA
WP_000777782.1|1420911_1422099_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_000747253.1|1422095_1422584_-	DUF5590 domain-containg protein	NA	NA	NA	NA	NA
1422632:1422663	attL	ATACTCTTCGAAAATCTCTTCAAACCACGTCA	NA	NA	NA	NA
WP_050084726.1|1422904_1423453_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000697775.1|1423730_1424459_-	peroxide stress protein YaaA	NA	A0A1X9I5I0	Streptococcus_phage	39.0	2.6e-40
WP_000508269.1|1424537_1424702_-	YczI family protein	NA	NA	NA	NA	NA
WP_088779396.1|1424868_1426464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000412214.1|1426475_1426886_-	peptide deformylase	NA	A0A2I7R224	Vibrio_phage	32.2	1.3e-09
WP_111702622.1|1427001_1427793_-	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA	NA
WP_000032458.1|1427805_1430502_-	cation-translocating P-type ATPase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	28.6	8.1e-71
WP_000813916.1|1430805_1431990_+	CDF family manganese efflux transporter MntE	NA	NA	NA	NA	NA
WP_111702623.1|1432179_1434051_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	31.3	1.3e-56
WP_172449528.1|1434047_1435232_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	32.1	5.2e-38
WP_111702625.1|1435243_1436011_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_000762065.1|1436287_1437136_-	DegV family protein	NA	NA	NA	NA	NA
WP_001050086.1|1437137_1437512_-	DUF1149 family protein	NA	NA	NA	NA	NA
WP_050155052.1|1437585_1438938_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_000742290.1|1438961_1439741_-	YbbR-like domain-containing protein	NA	NA	NA	NA	NA
WP_001011058.1|1439727_1440585_-	TIGR00159 family protein	NA	NA	NA	NA	NA
WP_000081003.1|1440720_1441689_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
WP_061654053.1|1441940_1442897_-	N-acetylmuramoyl-L-alanine amidase LytA	NA	A0A1S5SDF6	Streptococcus_phage	99.4	6.7e-145
WP_001186240.1|1442900_1443233_-|holin	phage holin	holin	A0A1S5SG48	Streptococcus_phage	99.1	7.4e-51
WP_061654054.1|1443236_1443653_-|holin	phage holin family protein	holin	A0A1S5SEC7	Streptococcus_phage	99.3	6.4e-68
WP_000922100.1|1443662_1443926_-	hypothetical protein	NA	A0A1S5SEN3	Streptococcus_phage	100.0	1.8e-39
WP_050248781.1|1443985_1446064_-	structural protein	NA	A0A1S5SDV7	Streptococcus_phage	99.9	0.0e+00
WP_111702627.1|1446075_1450368_-|tail	phage tail protein	tail	A0A1S5SFN8	Streptococcus_phage	77.8	0.0e+00
WP_111702628.1|1450369_1451884_-|tail	phage tail family protein	tail	A0A1S5SE21	Streptococcus_phage	97.8	8.6e-296
WP_111702629.1|1451880_1455183_-	tape measure protein	NA	A0A1S5SFV6	Streptococcus_phage	95.5	0.0e+00
WP_078132200.1|1455175_1455745_-	hypothetical protein	NA	A0A1C9LX72	Streptococcus_phage	100.0	4.2e-102
WP_000129842.1|1455757_1456246_-	hypothetical protein	NA	A0A1S5SEB3	Streptococcus_phage	100.0	2.2e-83
WP_000198231.1|1456310_1456760_-	hypothetical protein	NA	A0A1S5SE99	Streptococcus_phage	100.0	4.9e-82
WP_001208881.1|1456756_1457164_-|capsid	phage capsid protein	capsid	A0A1S5SEE3	Streptococcus_phage	100.0	3.2e-72
WP_001017358.1|1457163_1457508_-	hypothetical protein	NA	A0A1S5SDW5	Streptococcus_phage	100.0	5.0e-58
WP_061369462.1|1457507_1457879_-|capsid	capsid protein	capsid	A0A1S5SDP6	Streptococcus_phage	97.6	6.1e-62
WP_000221836.1|1457868_1458261_-	hypothetical protein	NA	A0A1S5SEH1	Streptococcus_phage	100.0	5.3e-64
WP_001240344.1|1458303_1458537_-	hypothetical protein	NA	A0A1S5SEE1	Streptococcus_phage	100.0	6.8e-35
WP_001139820.1|1458547_1459429_-	hypothetical protein	NA	A0A1S5SCM2	Streptococcus_phage	100.0	2.1e-161
WP_000896122.1|1459446_1460010_-	phage scaffolding protein	NA	A0A1S5SEM4	Streptococcus_phage	100.0	9.9e-80
WP_000730217.1|1460148_1461300_-|capsid	phage minor capsid protein	capsid	A0A1S5SEP6	Streptococcus_phage	100.0	1.9e-218
WP_000169861.1|1461342_1461516_-	hypothetical protein	NA	A0A1S5SEA5	Streptococcus_phage	100.0	1.3e-22
WP_000051862.1|1461502_1463071_-|portal	phage portal protein	portal	Q0R582	Streptococcus_phage	100.0	1.9e-301
WP_111702630.1|1463083_1464394_-|terminase	PBSX family phage terminase large subunit	terminase	U4KJA9	Streptococcus_phage	99.8	1.8e-257
WP_001136855.1|1464383_1464839_-	hypothetical protein	NA	A0A1C9LX59	Streptococcus_phage	100.0	5.0e-74
WP_000057534.1|1465042_1465789_-	hypothetical protein	NA	A0A1S5SDW7	Streptococcus_phage	100.0	1.3e-135
WP_172449505.1|1465769_1466858_-	DUF4417 domain-containing protein	NA	A0A1S5SEG1	Streptococcus_phage	99.7	1.3e-200
WP_000162611.1|1466929_1467322_-	hypothetical protein	NA	A0A1S5SED1	Streptococcus_phage	100.0	7.1e-69
WP_000616764.1|1467321_1467615_-	hypothetical protein	NA	A0A1S5SEA8	Streptococcus_phage	96.9	1.0e-48
WP_111702632.1|1467598_1468144_-	DUF1642 domain-containing protein	NA	A0A1S5SB02	Streptococcus_phage	96.0	2.8e-95
WP_023396074.1|1468145_1468463_-	hypothetical protein	NA	A0A1S5SEB5	Streptococcus_phage	98.1	1.7e-57
WP_000573750.1|1468511_1468718_-	hypothetical protein	NA	A0A1S5SDU5	Streptococcus_phage	100.0	1.1e-31
WP_000667209.1|1468719_1469121_-	hypothetical protein	NA	U4KJA0	Streptococcus_phage	100.0	1.9e-72
WP_050085602.1|1469252_1469990_-	hypothetical protein	NA	A0A141E1K8	Streptococcus_phage	99.6	1.3e-132
WP_050085608.1|1469991_1470426_-	hypothetical protein	NA	U4KJ68	Streptococcus_phage	99.3	1.1e-65
WP_000161128.1|1470479_1470683_-	hypothetical protein	NA	U4KJ79	Streptococcus_phage	100.0	4.4e-30
WP_111702633.1|1470717_1471806_-	DNA cytosine methyltransferase	NA	A0A1S5SDW2	Streptococcus_phage	97.8	5.4e-191
WP_061364491.1|1471831_1472338_-	single-stranded DNA-binding protein	NA	A0A1S5SDP3	Streptococcus_phage	86.9	2.4e-85
WP_001203349.1|1472327_1472504_-	hypothetical protein	NA	A0A1S5SE71	Streptococcus_phage	100.0	4.8e-25
WP_061364492.1|1472525_1473518_-	DUF1351 domain-containing protein	NA	A0A1S5SE30	Streptococcus_phage	94.2	7.4e-171
WP_050200003.1|1473520_1474228_-	ERF family protein	NA	Q0R5A5	Streptococcus_phage	99.6	2.0e-117
WP_111702634.1|1474233_1474686_-	hypothetical protein	NA	U4KJB3	Streptococcus_phage	99.3	1.4e-81
WP_000450965.1|1474769_1475036_-	hypothetical protein	NA	A0A1C9LX40	Streptococcus_phage	100.0	1.1e-41
WP_000989846.1|1475267_1475534_-	Rrf2 family transcriptional regulator	NA	A0A1S5SC67	Streptococcus_phage	100.0	2.0e-43
WP_050202677.1|1475719_1476427_-	phage antirepressor KilAC domain-containing protein	NA	A0A1S5SE89	Streptococcus_phage	100.0	1.6e-132
WP_024478215.1|1476438_1476648_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SEJ0	Streptococcus_phage	98.6	1.4e-31
WP_073177132.1|1476749_1476839_+	type I addiction module toxin, Fst family	NA	NA	NA	NA	NA
WP_024478216.1|1477258_1477618_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SED8	Streptococcus_phage	100.0	8.5e-61
WP_000136431.1|1477639_1478020_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A1S5SEB1	Streptococcus_phage	100.0	3.2e-66
WP_111702635.1|1478037_1478553_+	hypothetical protein	NA	A0A1S5SEE4	Streptococcus_phage	99.4	3.1e-80
WP_000266847.1|1478669_1479797_+|integrase	site-specific integrase	integrase	A0A1S5SEM0	Streptococcus_phage	100.0	4.5e-209
WP_000011276.1|1479884_1480796_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	100.0	2.3e-155
WP_001231086.1|1480792_1481770_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	100.0	1.2e-184
WP_000163033.1|1481766_1482657_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	3.9e-06
WP_001140412.1|1482708_1483089_-	RidA family protein	NA	NA	NA	NA	NA
WP_000422599.1|1483099_1483687_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_101029949.1|1483695_1484928_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.2	6.4e-132
WP_000442260.1|1484964_1485135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111702636.1|1485134_1485641_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	43.1	1.0e-27
WP_061632667.1|1485770_1486289_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
WP_078170156.1|1486785_1488291_-|holin	choline binding-anchored murein hydrolase LytC	holin	NA	NA	NA	NA
1492674:1492705	attR	TGACGTGGTTTGAAGAGATTTTCGAAGAGTAT	NA	NA	NA	NA
>prophage 9
NZ_LS483451	Streptococcus pneumoniae strain 4041STDY6836166 chromosome 1	2200529	1782608	1789940	2200529		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_111702710.1|1782608_1783310_+	UDP-glucose 4-epimerase	NA	A0A2K9L1R4	Tupanvirus	35.6	9.2e-35
WP_061748846.1|1783732_1784692_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	2.4e-57
WP_055348168.1|1784681_1785638_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000764310.1|1785634_1786387_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.2	3.7e-13
WP_000858245.1|1786482_1787448_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000821640.1|1787672_1787915_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	1.3e-17
WP_001222228.1|1787914_1788637_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000105310.1|1788623_1789193_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
WP_000351907.1|1789211_1789940_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
>prophage 10
NZ_LS483451	Streptococcus pneumoniae strain 4041STDY6836166 chromosome 1	2200529	2178186	2186940	2200529		Streptococcus_phage(33.33%)	9	NA	NA
WP_000510412.1|2178186_2179026_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	32.6	1.1e-15
WP_000835715.1|2179010_2179838_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	32.9	2.8e-22
WP_000712132.1|2179834_2180380_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001227959.1|2180390_2181212_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_111702763.1|2181253_2182537_-	insulinase family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	6.5e-18
WP_000424263.1|2182533_2183784_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.3	3.5e-93
WP_000455898.1|2183942_2184311_+	RNA-binding S4 domain-containing protein	NA	A0A1X9I5V8	Streptococcus_phage	56.0	4.5e-17
WP_111702764.1|2184313_2185411_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_000073428.1|2185461_2186940_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
