The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483450	Streptococcus pneumoniae strain 4041STDY6583227 chromosome 1	2157682	40974	52285	2157682		Synechococcus_phage(33.33%)	7	NA	NA
WP_000668290.1|40974_43128_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.0	1.0e-44
WP_000801615.1|43140_44490_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_000043301.1|44659_45367_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.8e-41
WP_032495853.1|45423_49149_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.7	9.6e-38
WP_001861990.1|49241_50684_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	5.7e-55
WP_000182575.1|50720_51743_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
WP_000717506.1|51739_52285_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	7.4e-24
>prophage 2
NZ_LS483450	Streptococcus pneumoniae strain 4041STDY6583227 chromosome 1	2157682	104153	136992	2157682	bacteriocin,tRNA	Planktothrix_phage(33.33%)	32	NA	NA
WP_001230165.1|104153_104441_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_050255662.1|104492_106601_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571329.1|106597_107239_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.3	3.3e-23
WP_001038481.1|107445_108252_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_109680583.1|108217_108688_+	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_050257891.1|108977_109841_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_050129033.1|110306_112526_+	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	25.5	2.3e-39
WP_001096141.1|112518_112986_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000781019.1|112982_114335_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000424451.1|114481_114799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050202934.1|114804_115707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424453.1|115762_116143_+|bacteriocin	SP_0115 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_001811647.1|116645_116966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000424436.1|117723_118077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025169781.1|118073_118802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000909535.1|118955_119168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050255642.1|119972_121031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050213931.1|121345_122323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424474.1|122700_123075_+|bacteriocin	SPH_0224 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_050255643.1|123282_124185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424449.1|124240_124594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001812064.1|124590_125319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000770318.1|126453_126693_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	52.7	9.5e-16
WP_061466336.1|127240_129529_+	pneumococcal surface protein A	NA	NA	NA	NA	NA
WP_050247885.1|129929_131051_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000193634.1|131191_131647_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000220964.1|131656_133570_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_000331983.1|133922_135602_-	ribonuclease J	NA	NA	NA	NA	NA
WP_000639577.1|135603_135837_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_000184686.1|136218_136440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000977347.1|136652_136805_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
WP_000180803.1|136806_136992_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibA	bacteriocin	NA	NA	NA	NA
>prophage 3
NZ_LS483450	Streptococcus pneumoniae strain 4041STDY6583227 chromosome 1	2157682	290525	364269	2157682	holin,transposase,protease	Streptococcus_phage(33.33%)	60	NA	NA
WP_111695755.1|290525_291872_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	39.8	1.7e-77
WP_078136079.1|292030_293770_+	alpha-xylosidase	NA	NA	NA	NA	NA
WP_050095088.1|293991_294468_-	glutathione peroxidase	NA	NA	NA	NA	NA
WP_050210216.1|294690_297894_+	LPXTG-anchored hyaluronate lyase	NA	NA	NA	NA	NA
WP_000167294.1|299038_299668_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_000161480.1|299677_300679_-	sugar kinase	NA	NA	NA	NA	NA
WP_050255653.1|300709_301351_-	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA	NA
WP_000185877.1|301369_302185_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_000706833.1|302455_302884_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_000592938.1|302895_304086_+	glycoside hydrolase family 88 protein	NA	NA	NA	NA	NA
WP_000178620.1|304096_304588_+	PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB	NA	NA	NA	NA	NA
WP_000026610.1|304602_305382_+	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA	NA
WP_000148012.1|305368_306187_+	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
WP_000381737.1|306186_306480_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_050255654.1|306501_308403_+	alginate lyase family protein	NA	NA	NA	NA	NA
WP_000412453.1|308462_309464_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000838119.1|309573_309909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000711739.1|309919_310162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001082472.1|310177_310372_-	helix-turn-helix transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	42.6	9.4e-06
WP_000159397.1|310537_311488_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_000818547.1|311499_311817_+	cell division protein FtsL	NA	NA	NA	NA	NA
WP_000872275.1|311820_314073_+	penicillin-binding protein 2X	NA	NA	NA	NA	NA
WP_050255655.1|314074_315055_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_050972209.1|315663_317769_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.7	2.0e-117
WP_050090765.1|318064_318547_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_050972208.1|318641_320126_-	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_050972207.1|320278_321886_+	alpha-glucosidase	NA	NA	NA	NA	NA
WP_001022231.1|322044_322218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033705610.1|322954_324400_+	LCP family protein	NA	A0A1X9I5X1	Streptococcus_phage	59.6	2.6e-132
WP_033705609.1|324401_325133_+	tyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_033705608.1|325141_325834_+	capsular biosynthesis protein CpsC	NA	A0A1X9I5E1	Streptococcus_phage	56.8	1.8e-62
WP_001142528.1|325843_326518_+	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	63.4	8.5e-78
WP_000286441.1|326864_327464_+	sugar transferase	NA	NA	NA	NA	NA
WP_001813070.1|327468_328695_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_000866355.1|328691_329861_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_000977706.1|329898_331110_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_000761414.1|331084_332161_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_050972205.1|332162_333341_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_033705605.1|333382_334570_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_000091999.1|334566_336111_+	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_000611245.1|336103_337327_+	nucleotide sugar dehydrogenase	NA	M1HNJ7	Paramecium_bursaria_Chlorella_virus	28.0	9.8e-24
WP_000725279.1|337355_338453_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	30.5	5.7e-31
WP_000077425.1|338456_339512_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	33.0	2.6e-33
WP_000594467.1|339611_340841_+	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_033705603.1|340841_342026_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	51.3	1.2e-103
WP_001811052.1|342388_342547_-|transposase	transposase domain-containing protein	transposase	NA	NA	NA	NA
WP_164965722.1|343139_343367_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_050255635.1|344056_344242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050255501.1|345380_347363_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_050255500.1|347663_352967_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_050255499.1|353133_355293_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_050226569.1|355289_355886_-	Holliday junction resolvase RecU	NA	A0A1L2JY30	Aeribacillus_phage	34.5	3.0e-18
WP_000179547.1|355951_356479_+	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_000146522.1|356548_356878_+	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_000711385.1|357363_358521_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_050255498.1|358533_359928_+	mid-cell-anchored protein MapZ	NA	NA	NA	NA	NA
WP_000158781.1|360003_361428_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	1.6e-41
WP_000518017.1|361439_362129_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_050255497.1|362226_363252_+|holin	choline-binding protein CbpC	holin	NA	NA	NA	NA
WP_050255496.1|363270_364269_+|holin	choline-binding protein CbpJ	holin	NA	NA	NA	NA
>prophage 4
NZ_LS483450	Streptococcus pneumoniae strain 4041STDY6583227 chromosome 1	2157682	436588	501373	2157682	transposase,bacteriocin,tRNA	Klosneuvirus(16.67%)	60	NA	NA
WP_001818741.1|436588_437560_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_001270405.1|437646_437784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000280773.1|437814_438660_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_050255624.1|438806_439868_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000260643.1|440216_442541_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.9	7.9e-115
WP_001811329.1|442907_443123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000384128.1|443452_443737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000454380.1|445242_445701_+	PTS alpha-glucoside transporter subunit IIB	NA	NA	NA	NA	NA
WP_016399017.1|445825_447265_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000691685.1|447268_448618_-	Trk system potassium transporter TrkA	NA	NA	NA	NA	NA
WP_050079332.1|448805_449654_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA	NA
WP_000403170.1|449668_450217_+	ECF-type riboflavin transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000693286.1|450223_450481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000656537.1|450582_452265_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	4.5e-19
WP_001148103.1|452249_453080_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000181380.1|453272_453776_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000185835.1|454228_454792_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000678706.1|454805_455432_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000867290.1|455459_455849_+	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
WP_000333653.1|455853_456303_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000418402.1|456430_457018_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_000105242.1|457407_459015_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	8.9e-142
WP_000026645.1|459573_461205_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_078136073.1|461493_466434_+	bacterial Ig-like domain-containing protein	NA	NA	NA	NA	NA
WP_001096742.1|466523_467720_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000119905.1|469327_469855_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000659547.1|469931_470288_+	transcriptional repressor GlnR	NA	NA	NA	NA	NA
WP_001122904.1|470324_471671_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001808898.1|471766_471886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410533.1|471850_472000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050113777.1|472451_473732_+	restriction endonuclease subunit S	NA	A0A1V0SKS6	Klosneuvirus	29.8	5.3e-12
WP_000651177.1|473788_474586_+	tyrosine-type DNA invertase PsrA	NA	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
WP_061450959.1|474596_475202_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_050103063.1|475149_476718_-	restriction endonuclease subunit S	NA	A0A1V0SLK8	Klosneuvirus	25.6	1.0e-12
WP_016397115.1|476717_478181_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_000229107.1|478193_480527_-	DEAD/DEAH box helicase family protein	NA	Q5YA94	Bacillus_phage	24.8	5.8e-25
WP_050230587.1|481134_481644_+	DUF2812 domain-containing protein	NA	NA	NA	NA	NA
WP_050255650.1|481807_482842_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_000046031.1|482868_483393_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_000034665.1|483872_485696_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
WP_001066295.1|486454_487591_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.3	2.4e-24
WP_000777760.1|488324_488612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001278301.1|488621_489032_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
WP_000889924.1|489099_489831_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	9.0e-25
WP_000653779.1|489827_490877_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000132572.1|491044_491374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000876675.1|491649_491988_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001219120.1|491992_492730_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001017646.1|492743_494084_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000358815.1|494154_494283_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
WP_001069075.1|494339_495701_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_078063978.1|495711_497355_-	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	27.2	1.1e-41
WP_000205166.1|497281_497869_-	peptidase C39	NA	NA	NA	NA	NA
WP_001093259.1|498150_498348_+|bacteriocin	bacteriocin-like peptide BlpI	bacteriocin	NA	NA	NA	NA
WP_001093248.1|498814_499084_+|bacteriocin	bacteriocin-like peptide BlpJ	bacteriocin	NA	NA	NA	NA
WP_000379967.1|499152_499383_+|bacteriocin	bacteriocin-like peptide BlpU	bacteriocin	NA	NA	NA	NA
WP_000346298.1|499385_499505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000727118.1|499801_499966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000846943.1|499962_500367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111695758.1|500569_501373_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_LS483450	Streptococcus pneumoniae strain 4041STDY6583227 chromosome 1	2157682	862621	870762	2157682	holin	Streptococcus_phage(87.5%)	8	NA	NA
WP_050119657.1|862621_864505_+|holin	phosphorylcholine esterase CbpE	holin	Q332B9	Clostridium_botulinum_C_phage	22.9	1.2e-09
WP_001844793.1|864584_865715_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.1e-114
WP_050168506.1|865724_866987_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.3	4.2e-139
WP_050168505.1|866990_867788_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.6	1.5e-60
WP_000033388.1|868007_868646_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	67.6	2.9e-75
WP_050168504.1|868642_869533_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.4	6.4e-73
WP_000358228.1|869572_869890_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_001865314.1|869892_870762_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.7	2.3e-115
>prophage 6
NZ_LS483450	Streptococcus pneumoniae strain 4041STDY6583227 chromosome 1	2157682	944442	953949	2157682	integrase	Streptococcus_phage(77.78%)	12	943666:943680	950664:950678
943666:943680	attL	TTCAATTTTCATTTG	NA	NA	NA	NA
WP_000291923.1|944442_945951_-|integrase	site-specific integrase	integrase	M1NRJ9	Streptococcus_phage	27.6	8.4e-25
WP_001022845.1|946035_946269_-	hypothetical protein	NA	W6LM55	Streptococcus_phage	50.7	4.6e-15
WP_000919632.1|946535_946763_-	helix-turn-helix transcriptional regulator	NA	A0A0A7RUJ5	Clostridium_phage	46.9	1.0e-06
WP_000237134.1|946866_948696_-	relaxase/mobilization nuclease domain-containing protein	NA	A0A1B0RXG0	Streptococcus_phage	37.5	3.6e-06
WP_000401236.1|948682_949048_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
WP_000827835.1|949052_949409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001080184.1|949703_949994_-	hypothetical protein	NA	Q6DMX6	Streptococcus_phage	52.7	3.1e-21
WP_000981955.1|949983_950349_-	hypothetical protein	NA	A0A1B0RXA8	Streptococcus_phage	45.5	3.0e-21
WP_000118333.1|950345_951761_-	Y-family DNA polymerase	NA	M1Q231	Streptococcus_phage	72.8	6.8e-202
950664:950678	attR	TTCAATTTTCATTTG	NA	NA	NA	NA
WP_050255678.1|951763_952447_-	helix-turn-helix transcriptional regulator	NA	E8ZDN4	Streptococcus_phage	52.3	5.4e-64
WP_000405354.1|952702_953473_-	zeta toxin family protein	NA	NA	NA	NA	NA
WP_000579623.1|953472_953949_-	helix-turn-helix transcriptional regulator	NA	X2CXD8	Lactobacillus_phage	31.9	8.8e-05
>prophage 7
NZ_LS483450	Streptococcus pneumoniae strain 4041STDY6583227 chromosome 1	2157682	1092461	1109986	2157682	integrase	Streptococcus_phage(100.0%)	20	1092048:1092063	1104480:1104495
1092048:1092063	attL	ATCCAGCTTTTTCTTT	NA	NA	NA	NA
WP_050255545.1|1092461_1093679_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	99.0	6.0e-231
WP_000814512.1|1093760_1093964_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	97.0	2.0e-30
WP_000857133.1|1094420_1094651_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804599.1|1094647_1095070_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	97.9	3.7e-71
WP_001227347.1|1095574_1095928_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000336323.1|1095987_1096155_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_050237755.1|1096273_1098193_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	97.0	0.0e+00
WP_001814923.1|1098208_1098325_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_002345006.1|1098569_1099484_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	92.1	4.7e-156
WP_020224359.1|1099498_1100500_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	95.2	5.0e-183
WP_050237754.1|1100496_1102680_-	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	82.9	4.1e-307
WP_000331160.1|1102682_1105130_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
1104480:1104495	attR	ATCCAGCTTTTTCTTT	NA	NA	NA	NA
WP_000506270.1|1105113_1105620_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000342539.1|1105594_1106092_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_001009056.1|1106208_1106430_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000398284.1|1106472_1107678_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_000879507.1|1107700_1107853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813488.1|1107855_1109241_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000985015.1|1109269_1109656_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|1109671_1109986_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
>prophage 8
NZ_LS483450	Streptococcus pneumoniae strain 4041STDY6583227 chromosome 1	2157682	1121724	1262576	2157682	bacteriocin,holin,transposase,protease,tRNA,integrase	Streptococcus_phage(22.22%)	115	1137538:1137555	1183433:1183450
WP_000821269.1|1121724_1122312_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000840776.1|1122314_1122548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000566541.1|1122560_1122941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000645881.1|1122933_1123383_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001210972.1|1123366_1124725_-	DNA (cytosine-5-)-methyltransferase	NA	A0A141E1L1	Streptococcus_phage	56.7	1.6e-131
WP_000822769.1|1124823_1125603_-	replication initiator protein A	NA	A0A286QNA4	Streptococcus_phage	31.2	1.8e-10
WP_000159603.1|1125599_1125773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078064061.1|1126248_1126425_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_050255549.1|1126476_1132491_-	G5 domain-containing protein	NA	NA	NA	NA	NA
WP_002206669.1|1132699_1133878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050139385.1|1134047_1137698_-	helicase-exonuclease AddAB subunit AddA	NA	G3MA40	Bacillus_virus	25.3	2.0e-19
1137538:1137555	attL	GTCTTTCCAGAACCAGCC	NA	NA	NA	NA
WP_050255552.1|1137694_1140970_-	ATP-dependent nuclease subunit B	NA	NA	NA	NA	NA
WP_078136058.1|1142369_1142798_+|integrase	tyrosine-type recombinase/integrase	integrase	W6LMU7	Streptococcus_phage	70.9	2.9e-39
WP_000022813.1|1142935_1144240_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	94.5	4.7e-234
WP_000131080.1|1144403_1144850_+	YueI family protein	NA	NA	NA	NA	NA
WP_016399533.1|1144846_1145962_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	50.5	1.6e-73
WP_111695755.1|1146762_1148109_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	39.8	1.7e-77
WP_050213559.1|1148382_1149816_-	glycogen synthase GlgA	NA	NA	NA	NA	NA
WP_000687070.1|1149812_1150952_-	glucose-1-phosphate adenylyltransferase subunit GlgD	NA	NA	NA	NA	NA
WP_000787276.1|1150941_1152084_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
WP_050213561.1|1152073_1154002_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_000199381.1|1154484_1155909_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000283058.1|1156453_1158733_-	type I pullulanase	NA	NA	NA	NA	NA
WP_050255508.1|1158844_1160803_-	NAD-dependent DNA ligase LigA	NA	A0A0A8J9A9	Ralstonia_phage	34.7	2.0e-103
WP_000400559.1|1162065_1162929_-	MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_050244936.1|1162931_1164833_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.2	5.2e-56
WP_001284639.1|1165258_1165534_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	66.3	9.2e-23
WP_000161389.1|1165639_1166479_-	DegV family protein	NA	NA	NA	NA	NA
WP_000592056.1|1166620_1167469_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	46.5	1.4e-64
WP_044788702.1|1167561_1168479_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_000916509.1|1169326_1169620_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_000613700.1|1169636_1169981_-|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
WP_000109141.1|1169996_1170311_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_078136054.1|1170528_1171128_-	DUF1275 domain-containing protein	NA	NA	NA	NA	NA
WP_000981526.1|1171597_1171897_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_000451584.1|1172237_1173212_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_001210007.1|1173255_1174152_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000799053.1|1174148_1174967_-	NAD kinase	NA	NA	NA	NA	NA
WP_000171676.1|1174950_1175622_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_000681292.1|1175749_1176319_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001283813.1|1176431_1177391_+	ribose-phosphate diphosphokinase	NA	A0A2K9L2G2	Tupanvirus	32.8	9.3e-38
WP_000639662.1|1177400_1178516_+	cysteine desulfurase	NA	H7BUW1	unidentified_phage	36.8	1.0e-27
WP_000863509.1|1178520_1178868_+	DUF1831 domain-containing protein	NA	NA	NA	NA	NA
WP_000462488.1|1178875_1179091_+	DUF4649 family protein	NA	NA	NA	NA	NA
WP_000653403.1|1179173_1179815_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_050168529.1|1179832_1180522_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA	NA
WP_000286922.1|1180518_1181199_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_000992875.1|1181241_1183533_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.1	9.5e-129
1183433:1183450	attR	GTCTTTCCAGAACCAGCC	NA	NA	NA	NA
WP_111695772.1|1183723_1184528_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_000590570.1|1184535_1184838_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_001047216.1|1185900_1187724_-	elongation factor 4	NA	A0A2K9L2P9	Tupanvirus	40.9	8.3e-19
WP_000133335.1|1187802_1188531_-	serine/threonine protein phosphatase	NA	A0A0N9SH20	Staphylococcus_phage	26.1	1.6e-05
WP_050255444.1|1188532_1190200_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001034412.1|1190206_1190638_-	arginine repressor	NA	NA	NA	NA	NA
WP_001041073.1|1190630_1191446_-	TlyA family RNA methyltransferase	NA	NA	NA	NA	NA
WP_050255443.1|1191438_1192314_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_000043230.1|1192310_1192523_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000417489.1|1192500_1193841_-	exodeoxyribonuclease VII large subunit	NA	A0A1B3AYB4	Gordonia_phage	33.6	3.9e-34
WP_001181378.1|1193968_1194607_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.9	8.4e-35
WP_000985088.1|1194714_1195017_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_001013252.1|1195257_1196136_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_001002624.1|1196145_1197420_-	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
WP_000254797.1|1198922_1199720_-	formate/nitrite transporter family protein	NA	NA	NA	NA	NA
WP_000078847.1|1199963_1200707_-	sortase SrtA	NA	NA	NA	NA	NA
WP_050255442.1|1200706_1203175_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.6	7.1e-106
WP_000204727.1|1203368_1204355_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_001808790.1|1204526_1205873_+|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
WP_001143843.1|1206372_1209627_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_000150986.1|1209791_1211663_-	Eco57I restriction-modification methylase domain-containing protein	NA	A0A1V0SF91	Hokovirus	25.1	9.7e-15
WP_001809704.1|1211737_1211992_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_000208080.1|1211993_1212236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001289493.1|1212326_1213136_-	MBL fold metallo-hydrolase	NA	A0A0C5AFC1	Paenibacillus_phage	39.0	1.8e-34
WP_000886210.1|1213137_1214487_-	cell wall metabolism sensor histidine kinase VicK	NA	W8CYF6	Bacillus_phage	34.6	1.8e-34
WP_000722076.1|1214479_1215184_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.8	2.8e-39
WP_000886147.1|1215238_1216414_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000845290.1|1216741_1218412_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_050255441.1|1218641_1219331_+	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
WP_044727478.1|1219342_1219894_+	phosphopantothenoylcysteine decarboxylase	NA	A0A068EHP1	Penguinpox_virus	37.2	4.0e-25
WP_000747408.1|1219877_1220441_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001097402.1|1220718_1221246_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000159176.1|1221257_1221773_+	transcription repressor NadR	NA	NA	NA	NA	NA
WP_000091534.1|1221769_1222237_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_023940191.1|1222309_1222798_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_050255440.1|1222763_1223327_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000607033.1|1223336_1225325_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
WP_000792121.1|1225401_1226355_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000726272.1|1226527_1228693_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001096339.1|1228692_1229433_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.6	5.3e-33
WP_000096160.1|1229581_1231069_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	32.8	6.5e-70
WP_000522311.1|1231112_1232402_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_000763468.1|1232405_1233224_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000153021.1|1233223_1234018_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_050244925.1|1234014_1237554_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
WP_000661490.1|1237544_1238243_-	ribonuclease III	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	33.3	8.6e-25
WP_001844634.1|1238560_1239547_-	GMP reductase	NA	G3MBI2	Bacillus_virus	72.2	1.4e-137
WP_050217622.1|1239721_1241038_-	McrC family protein	NA	NA	NA	NA	NA
WP_050217621.1|1241024_1242938_-	McrB family protein	NA	K4I1H4	Acidithiobacillus_phage	33.7	1.8e-16
WP_001867136.1|1243886_1244246_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_000762426.1|1244249_1244519_-	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_001074712.1|1244515_1245553_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_000461585.1|1246677_1247334_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
WP_000638796.1|1247377_1248010_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_001237219.1|1248102_1248462_-	YbaN family protein	NA	NA	NA	NA	NA
WP_000179635.1|1248567_1250655_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	37.6	3.0e-105
WP_012677071.1|1250821_1251865_-	TIGR00341 family protein	NA	NA	NA	NA	NA
WP_050255693.1|1252230_1253184_-|transposase	IS30-like element ISSpn8 family transposase	transposase	H7BWC8	unidentified_phage	35.2	1.6e-34
WP_000705306.1|1253993_1254842_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	39.5	4.2e-34
WP_000643975.1|1254939_1255629_-	NTP transferase domain-containing protein	NA	A0A127AW70	Bacillus_phage	45.0	3.4e-05
WP_000837609.1|1255640_1256519_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000411229.1|1256508_1257378_-|holin	choline kinase LicA	holin	NA	NA	NA	NA
WP_050091083.1|1257394_1258417_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000638502.1|1258421_1259129_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_044813576.1|1259464_1260952_+	type IV teichoic acid flippase TacF	NA	NA	NA	NA	NA
WP_000811991.1|1260961_1261765_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	27.1	4.0e-10
WP_001199649.1|1261766_1262576_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	9.1e-10
>prophage 9
NZ_LS483450	Streptococcus pneumoniae strain 4041STDY6583227 chromosome 1	2157682	1409472	1415248	2157682		Streptococcus_phage(50.0%)	9	NA	NA
WP_001272961.1|1409472_1410084_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_000855753.1|1410128_1410857_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000272311.1|1410893_1411805_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.5	2.9e-89
WP_000926599.1|1411870_1412095_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000590970.1|1412172_1412916_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
WP_001103449.1|1412915_1413716_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000889093.1|1413873_1414230_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_050255631.1|1414223_1414754_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	54.3	1.4e-46
WP_000405832.1|1414753_1415248_-	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.1	1.9e-42
>prophage 10
NZ_LS483450	Streptococcus pneumoniae strain 4041STDY6583227 chromosome 1	2157682	1514772	1524029	2157682	transposase,protease	Streptococcus_phage(57.14%)	10	NA	NA
WP_000081000.1|1514772_1515741_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	99.2	4.1e-65
WP_000011306.1|1515774_1516686_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	99.7	1.5e-154
WP_001231089.1|1516682_1517660_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	99.7	3.4e-184
WP_000163035.1|1517656_1518547_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	6.7e-06
WP_001140412.1|1518598_1518979_-	RidA family protein	NA	NA	NA	NA	NA
WP_000422599.1|1518989_1519577_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_000106346.1|1519585_1520818_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
WP_050972239.1|1521019_1521526_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	42.5	1.1e-26
WP_000229874.1|1521655_1522174_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
WP_001808790.1|1522682_1524029_+|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
>prophage 11
NZ_LS483450	Streptococcus pneumoniae strain 4041STDY6583227 chromosome 1	2157682	1769684	1777016	2157682		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_000167830.1|1769684_1770386_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	36.5	1.2e-34
WP_000777248.1|1770808_1771768_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	4.0e-57
WP_001193674.1|1771757_1772714_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000764303.1|1772710_1773463_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	5.6e-14
WP_000858253.1|1773558_1774524_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000821640.1|1774748_1774991_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	1.3e-17
WP_001222228.1|1774990_1775713_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000105310.1|1775699_1776269_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
WP_000351907.1|1776287_1777016_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
>prophage 12
NZ_LS483450	Streptococcus pneumoniae strain 4041STDY6583227 chromosome 1	2157682	1978398	2041565	2157682	holin,transposase,protease,tRNA	Bacillus_phage(27.27%)	59	NA	NA
WP_001092701.1|1978398_1980090_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.2	3.5e-80
WP_001809936.1|1980905_1981127_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_078136052.1|1981113_1981416_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_000166475.1|1981499_1982207_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.6	1.4e-38
WP_000833273.1|1982207_1983539_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.9	1.9e-33
WP_050214140.1|1983705_1984581_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_050255507.1|1984698_1985562_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_050215196.1|1985554_1986370_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_000536447.1|1986371_1987124_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	27.4	1.3e-15
WP_001245781.1|1987138_1987789_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_078136050.1|1987856_1988282_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_001206584.1|1988404_1988845_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000415108.1|1989056_1990073_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000202225.1|1990094_1990994_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	50.7	8.1e-76
WP_000428160.1|1991411_1992344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000658497.1|1992446_1993124_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_000834309.1|1993107_1993647_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_000886113.1|1993658_1994789_-	N-acetyldiaminopimelate deacetylase	NA	NA	NA	NA	NA
WP_000127471.1|1994856_1995555_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA	NA	NA	NA	NA
WP_001833917.1|1995784_1996696_-	EamA family transporter	NA	NA	NA	NA	NA
WP_001180964.1|1996760_1999226_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_000546867.1|1999367_2000624_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A2C9CYK4	Yersinia_phage	41.3	1.5e-75
WP_000008792.1|2000701_2002765_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	26.0	4.5e-53
WP_000910909.1|2002766_2003045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001095514.1|2003189_2004038_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_025169814.1|2004881_2005454_+	membrane protein	NA	NA	NA	NA	NA
WP_000950158.1|2006497_2008756_-	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	37.5	5.7e-09
WP_000747289.1|2008781_2010299_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
WP_000095484.1|2010849_2012121_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000414968.1|2012231_2013524_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_050255506.1|2013525_2014368_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_000938220.1|2014620_2015421_+	DUF1189 domain-containing protein	NA	NA	NA	NA	NA
WP_001145439.1|2015430_2016417_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000806289.1|2016753_2017695_-	YitT family protein	NA	NA	NA	NA	NA
WP_000830874.1|2017672_2019436_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SJ84	Klosneuvirus	26.4	3.9e-13
WP_000832180.1|2019742_2019973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000771230.1|2019990_2020632_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000730284.1|2020643_2021378_-	DUF3169 family protein	NA	NA	NA	NA	NA
WP_050226937.1|2021380_2021578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001176227.1|2021577_2021784_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001818660.1|2021793_2022108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000775888.1|2022403_2023693_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_050103856.1|2023770_2025018_-	transporter	NA	NA	NA	NA	NA
WP_000434977.1|2025208_2026060_-	transcriptional regulator Rgg	NA	NA	NA	NA	NA
WP_050100380.1|2026183_2026525_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
WP_050255504.1|2026778_2028482_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_001808790.1|2028828_2030175_+|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
WP_000986393.1|2030422_2031355_-	transketolase family protein	NA	NA	NA	NA	NA
WP_000603788.1|2031351_2032209_-	transketolase	NA	A0A2K9L6P9	Tupanvirus	31.2	5.4e-29
WP_000975301.1|2032212_2033559_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_000912476.1|2033571_2033856_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_000460913.1|2033859_2035890_-	BglG family transcription antiterminator	NA	NA	NA	NA	NA
WP_050226940.1|2036080_2037088_+	SPFH domain-containing protein	NA	NA	NA	NA	NA
WP_000796544.1|2037090_2037291_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_000290419.1|2037442_2037625_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_001265622.1|2037640_2037790_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_111695783.1|2038269_2040255_-|holin	choline-binding protein PcpA	holin	NA	NA	NA	NA
WP_001809622.1|2040589_2040772_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_111695784.1|2040716_2041565_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_LS483450	Streptococcus pneumoniae strain 4041STDY6583227 chromosome 1	2157682	2097839	2128822	2157682	holin,transposase,protease,tRNA	Streptococcus_phage(75.0%)	27	NA	NA
WP_001808790.1|2097839_2099186_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
WP_000076776.1|2099575_2101084_-	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_001808790.1|2101293_2102640_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
WP_000280536.1|2102950_2104378_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000357847.1|2104542_2105415_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_000183295.1|2105401_2106382_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_050255529.1|2106611_2108717_-|holin	choline-binding protein CbpA	holin	NA	NA	NA	NA
WP_000241918.1|2108795_2109323_-	isoprenylcysteine carboxyl methyltransferase family protein	NA	NA	NA	NA	NA
WP_000594659.1|2109405_2110746_-	two-component system sensor histidine kinase HK06	NA	NA	NA	NA	NA
WP_001024075.1|2110742_2111396_-	two-component system response regulator RR06	NA	NA	NA	NA	NA
WP_001109697.1|2112037_2114470_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	40.6	6.5e-128
WP_001211274.1|2114471_2114930_-	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000136224.1|2115048_2115777_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.2	1.0e-28
WP_000754546.1|2115776_2116784_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001245127.1|2116821_2117580_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000647661.1|2117542_2117833_-	thiamine-binding protein	NA	NA	NA	NA	NA
WP_061466317.1|2118088_2119435_-|holin	choline binding-anchored murein hydrolase CbpD	holin	NA	NA	NA	NA
WP_001278167.1|2119523_2119790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111695787.1|2119791_2121144_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	61.3	6.3e-149
WP_000864220.1|2121187_2121640_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_050255532.1|2121636_2123610_-	DHH family phosphoesterase	NA	NA	NA	NA	NA
WP_000599104.1|2123745_2124294_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_000649971.1|2124373_2125036_-	ComF family protein	NA	NA	NA	NA	NA
WP_000867616.1|2125032_2126331_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	66.6	1.2e-165
WP_000395742.1|2126386_2127022_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	72.0	3.0e-77
WP_000029866.1|2127306_2128227_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	81.0	6.9e-139
WP_000646877.1|2128423_2128822_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_LS483450	Streptococcus pneumoniae strain 4041STDY6583227 chromosome 1	2157682	2135361	2144115	2157682		Streptococcus_phage(33.33%)	9	NA	NA
WP_000510412.1|2135361_2136201_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	32.6	1.1e-15
WP_000835715.1|2136185_2137013_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	32.9	2.8e-22
WP_000712132.1|2137009_2137555_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_050255484.1|2137565_2138387_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_050255485.1|2138428_2139712_-	insulinase family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	8.4e-18
WP_000424271.1|2139708_2140959_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.3	2.7e-93
WP_000455903.1|2141117_2141486_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
WP_000266660.1|2141488_2142586_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_000073428.1|2142636_2144115_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
