The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483523	Streptococcus pneumoniae strain 4041STDY6836169 chromosome 1	2145551	79308	135709	2145551	transposase,tRNA,protease,holin	Tupanvirus(16.67%)	56	NA	NA
WP_000705428.1|79308_79611_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000143736.1|79610_81077_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_023396168.1|81076_82519_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000224421.1|82642_83686_+	2,3-butanediol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	24.4	1.8e-10
WP_000568640.1|84063_84624_+	elongation factor P	NA	NA	NA	NA	NA
WP_000510591.1|84645_85035_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_000203654.1|85027_85450_+	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_023396166.1|85496_85874_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000148169.1|86236_86422_-	biofilm-regulating peptide BriC	NA	NA	NA	NA	NA
WP_053037948.1|86564_87821_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.6	1.8e-222
WP_001017398.1|88002_88770_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
WP_001173353.1|88766_89633_-	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA	NA
WP_000488675.1|89669_91037_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023396163.1|91048_91471_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_001052244.1|91467_91953_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_000774063.1|91955_93191_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_000763053.1|93212_93944_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	30.9	2.2e-15
WP_000167622.1|93977_94898_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_000857431.1|94890_95865_-	enoyl-[acyl-carrier-protein] reductase FabK	NA	NA	NA	NA	NA
WP_000257841.1|95984_96209_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_000852956.1|96268_97243_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_000386347.1|97242_97677_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000400073.1|97770_98556_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_000869675.1|98880_100245_+	aspartate kinase	NA	NA	NA	NA	NA
WP_000079361.1|100247_100619_+	DUF956 family protein	NA	NA	NA	NA	NA
WP_000884262.1|100832_102107_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.7	3.3e-91
WP_000735959.1|102131_103031_-	TDT family transporter	NA	NA	NA	NA	NA
WP_000206761.1|103140_103689_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_000891492.1|103906_105229_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023396161.1|105571_107908_-	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	50.0	1.8e-21
WP_000622946.1|108011_108560_-	CvpA family protein	NA	NA	NA	NA	NA
WP_000002019.1|108556_108859_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_000146861.1|108945_109818_+	ribonuclease HIII	NA	NA	NA	NA	NA
WP_001048155.1|109829_110444_+	signal peptidase I	NA	NA	NA	NA	NA
WP_000454487.1|110677_113044_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	27.1	3.4e-57
WP_023396160.1|113091_114375_-	trigger factor	NA	NA	NA	NA	NA
WP_023396159.1|115173_116310_-	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_000764150.1|116371_116809_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_000927661.1|116810_118766_-	transcription antiterminator	NA	NA	NA	NA	NA
WP_054365916.1|118789_120559_-	PTS mannitol transporter subunit IICBA	NA	NA	NA	NA	NA
WP_023396156.1|122041_123064_-|holin	choline-binding protein CbpF	holin	NA	NA	NA	NA
WP_001100138.1|123082_123904_-|protease	trypsin-like serine protease	protease	NA	NA	NA	NA
WP_000754501.1|123984_124224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001823720.1|124373_124646_-	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_078102538.1|124664_124979_-	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_000698434.1|125142_125775_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000743667.1|125788_126784_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_001224634.1|126780_127479_-	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_000210629.1|127556_128567_-	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
WP_000562441.1|128550_129558_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
WP_000373457.1|129544_130498_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
WP_000163315.1|130479_131358_-	mevalonate kinase	NA	NA	NA	NA	NA
WP_000196978.1|131479_131809_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001835194.1|132709_133297_+	lanthionine synthetase	NA	NA	NA	NA	NA
WP_000765673.1|133339_134572_+	MFS transporter	NA	NA	NA	NA	NA
WP_023396153.1|134689_135709_-|holin	choline-binding protein CbpC	holin	NA	NA	NA	NA
>prophage 2
NZ_LS483523	Streptococcus pneumoniae strain 4041STDY6836169 chromosome 1	2145551	144858	202864	2145551	transposase,protease	Streptococcus_phage(40.0%)	49	NA	NA
WP_053037948.1|144858_146115_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.6	1.8e-222
WP_111683426.1|146391_151695_-	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_023396149.1|151995_153978_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001809483.1|154176_154335_-|transposase	transposase domain-containing protein	transposase	NA	NA	NA	NA
WP_000927991.1|154927_155362_-|transposase	transposase	transposase	A0A218MNE7	uncultured_virus	24.6	2.1e-05
WP_000600902.1|155437_156289_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.4	1.5e-26
WP_000141502.1|156354_157404_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.5	8.3e-72
WP_000131458.1|157416_158010_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	H9NC63	Sphingomonas_phage	33.1	3.9e-10
WP_023396148.1|158010_158880_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	64.2	6.4e-102
WP_170835819.1|159374_160793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023396147.1|160911_162255_-	oligosaccharide repeat unit polymerase	NA	NA	NA	NA	NA
WP_023396577.1|162254_163241_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000029904.1|163243_163963_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA	NA
WP_000701496.1|164022_164199_-	LicD family protein	NA	A0A1V0SD50	Indivirus	55.1	5.0e-06
WP_001028657.1|164236_165181_-	glycosyltransferase family 8 protein	NA	A0A2P0VP84	Tetraselmis_virus	24.5	4.2e-06
WP_001013464.1|165276_166644_-	sugar transferase	NA	NA	NA	NA	NA
WP_111683428.1|166658_167348_-	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	62.8	2.2e-73
WP_000664150.1|167357_168050_-	capsular polysaccharide biosynthesis protein CpsC	NA	A0A1X9I5E1	Streptococcus_phage	58.5	3.2e-64
WP_023396143.1|168058_168790_-	capsular polysaccharide biosynthesis protein Cps4B	NA	NA	NA	NA	NA
WP_000091054.1|168791_170237_-	LCP family protein	NA	A0A1X9I5X1	Streptococcus_phage	60.1	1.3e-131
WP_001808790.1|170515_171862_-|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
WP_033604964.1|172681_172849_-	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
WP_001156771.1|173013_174621_-	alpha-glucosidase	NA	NA	NA	NA	NA
WP_000743617.1|174773_176258_+	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_023396142.1|176352_176835_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_023396141.1|177135_179241_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.4	2.2e-116
WP_000470835.1|179804_180785_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_000872270.1|180786_183039_-	penicillin-binding protein 2X	NA	NA	NA	NA	NA
WP_000818547.1|183042_183360_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_000159408.1|183371_184322_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_001082472.1|184487_184682_+	helix-turn-helix transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	42.6	9.4e-06
WP_023396140.1|184697_185240_+	DUF3278 domain-containing protein	NA	NA	NA	NA	NA
WP_000711739.1|185250_185493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000838121.1|185503_185839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000412453.1|185948_186950_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_001866206.1|187009_188911_-	alginate lyase family protein	NA	NA	NA	NA	NA
WP_000381738.1|188932_189226_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_000148019.1|189225_190044_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
WP_023396139.1|190030_190810_-	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA	NA
WP_001866207.1|190824_191316_-	PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB	NA	NA	NA	NA	NA
WP_000592946.1|191326_192517_-	glycoside hydrolase family 88 protein	NA	NA	NA	NA	NA
WP_023396138.1|192528_192963_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_000185877.1|193233_194049_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_000684777.1|194067_194709_+	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA	NA
WP_069286967.1|194739_195741_+	sugar kinase	NA	NA	NA	NA	NA
WP_023396137.1|195750_196380_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_023396136.1|197522_200726_-	LPXTG-anchored hyaluronate lyase	NA	NA	NA	NA	NA
WP_023396135.1|200948_201425_+	glutathione peroxidase	NA	NA	NA	NA	NA
WP_000436627.1|201607_202864_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.9	9.5e-224
>prophage 3
NZ_LS483523	Streptococcus pneumoniae strain 4041STDY6836169 chromosome 1	2145551	310939	372699	2145551	tRNA,integrase,protease,bacteriocin	Streptococcus_phage(35.29%)	63	309021:309037	321706:321722
309021:309037	attL	GCAAAAAGGGGAGCAAA	NA	NA	NA	NA
WP_000811078.1|310939_311449_-	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	53.9	5.8e-47
WP_000173130.1|311519_312050_-	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	48.7	2.8e-36
WP_000865230.1|312133_312301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000434361.1|312663_314133_-	DNA primase	NA	Q9AZI5	Lactococcus_phage	35.2	8.1e-65
WP_000158192.1|314185_315052_-	primase C-terminal domain-containing protein	NA	A0A1X9I6L2	Streptococcus_phage	75.0	8.2e-126
WP_000492137.1|315186_315468_-	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	67.8	7.9e-30
WP_000058832.1|315460_315802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001003774.1|315798_316014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000174331.1|316015_316216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000141100.1|316212_316665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000424665.1|317036_317663_-	Rha family transcriptional regulator	NA	R9QNB1	Lactococcus_phage	40.8	2.1e-30
WP_001107589.1|318060_318774_+	helix-turn-helix domain-containing protein	NA	Q708R9	Streptococcus_phage	51.9	2.0e-16
WP_001233766.1|318934_320449_+	putative DNA binding domain-containing protein	NA	NA	NA	NA	NA
WP_000704664.1|320533_321700_+|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	70.1	3.7e-153
WP_000815629.1|321860_322805_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
321706:321722	attR	GCAAAAAGGGGAGCAAA	NA	NA	NA	NA
WP_000078022.1|322816_323500_+	DUF1129 domain-containing protein	NA	NA	NA	NA	NA
WP_000255100.1|323754_324786_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_000987426.1|324940_325618_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000166575.1|325614_326178_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_000271487.1|326187_326781_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_001284096.1|327185_328286_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	38.2	3.8e-51
WP_000493838.1|328270_328906_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	46.9	1.3e-43
WP_000456639.1|328925_330131_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	49.5	3.5e-106
WP_001099505.1|330131_330599_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	52.0	4.1e-39
WP_023396114.1|330923_332873_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.3	3.8e-70
WP_000623387.1|333155_333389_-	ROK family protein	NA	NA	NA	NA	NA
WP_000792992.1|333813_334992_-	MFS transporter	NA	NA	NA	NA	NA
WP_000358548.1|334988_336380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000608717.1|336355_337462_-	pyridoxal-dependent decarboxylase	NA	NA	NA	NA	NA
WP_000358739.1|337682_338240_-	phosphopantothenate--cysteine ligase family flavoprotein	NA	A0A2H4X2C0	Flamingopox_virus	34.0	3.8e-15
WP_000537006.1|338576_339443_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000861967.1|340026_340467_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000745055.1|340463_340922_+	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_000075789.1|341231_342494_+	divalent metal cation transporter	NA	NA	NA	NA	NA
WP_000849621.1|342786_343257_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA	NA
WP_000729031.1|343334_343868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000278869.1|343919_345206_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_172448733.1|345217_346864_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000532354.1|346865_347480_-	YesL family protein	NA	NA	NA	NA	NA
WP_000748394.1|347614_348184_+	MptD family putative ECF transporter S component	NA	NA	NA	NA	NA
WP_000444642.1|348213_348906_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000085677.1|348907_349969_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.7	6.7e-29
WP_000231787.1|349961_351335_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_000694504.1|351434_352289_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000724951.1|352442_353273_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000253918.1|353376_353700_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_001141662.1|353689_354346_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_023396111.1|354844_356071_-	MFS transporter	NA	NA	NA	NA	NA
WP_000720788.1|356142_356808_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000738307.1|356819_357497_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000933479.1|357518_357752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023396110.1|358037_358901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023396559.1|359295_360468_-	nucleotide sugar dehydrogenase	NA	O41091	Paramecium_bursaria_Chlorella_virus	43.8	1.2e-79
WP_000069858.1|360480_361230_-	PIG-L family deacetylase	NA	NA	NA	NA	NA
WP_001813545.1|361241_362741_-	asparagine synthase	NA	NA	NA	NA	NA
WP_001835163.1|362975_363653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000288029.1|363672_365289_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	36.0	3.0e-28
WP_000375708.1|365298_366252_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000655041.1|370064_371075_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	NA	NA	NA	NA
WP_000569851.1|371064_371502_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_000865691.1|371498_372182_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_000180803.1|372359_372545_+|bacteriocin	fratricide two-peptide bacteriocin subunit CibA	bacteriocin	NA	NA	NA	NA
WP_000977347.1|372546_372699_+|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
>prophage 4
NZ_LS483523	Streptococcus pneumoniae strain 4041STDY6836169 chromosome 1	2145551	449057	460513	2145551		Synechococcus_phage(33.33%)	7	NA	NA
WP_000717506.1|449057_449603_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	7.4e-24
WP_000182582.1|449599_450622_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.6e-64
WP_000220632.1|450658_452101_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	5.7e-55
WP_023396094.1|452193_455919_-	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.2	6.2e-37
WP_000043300.1|456120_456828_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.8e-41
WP_023396757.1|456997_458347_-	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_000668282.1|458359_460513_-	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.5	3.6e-45
>prophage 5
NZ_LS483523	Streptococcus pneumoniae strain 4041STDY6836169 chromosome 1	2145551	488884	552878	2145551	transposase,tRNA,protease,holin	Streptococcus_phage(38.89%)	58	NA	NA
WP_001208988.1|488884_490162_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A7K9Y8	Acanthocystis_turfacea_chlorella_virus	24.1	2.5e-06
WP_001224749.1|490158_491427_-	serine hydrolase	NA	NA	NA	NA	NA
WP_000041909.1|491546_491915_-	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_001234978.1|491907_492174_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_000258080.1|492231_495741_-	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_000163933.1|495741_496311_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_001218707.1|496381_497497_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000285194.1|497580_497775_-	DUF951 family protein	NA	NA	NA	NA	NA
WP_000581157.1|497839_498976_-	DNA polymerase III subunit beta	NA	A0A0A8IL17	Aurantimonas_phage	24.4	1.6e-23
WP_000660615.1|499134_500496_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_000410383.1|500708_501467_-	ParB/RepB/Spo0J family partition protein	NA	S5VSZ7	Leptospira_phage	36.1	1.6e-16
WP_000681601.1|501524_502706_-|protease	serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.1	1.5e-16
WP_000695929.1|502888_503368_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_000799689.1|503649_503775_+	competence-stimulating peptide ComC	NA	NA	NA	NA	NA
WP_000362880.1|503795_505121_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000866065.1|505117_505870_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001158266.1|506112_506655_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000834682.1|507968_510521_-	YfhO family protein	NA	NA	NA	NA	NA
WP_000958769.1|510582_512205_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	26.0	7.6e-48
WP_000165444.1|512410_513436_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000073428.1|513587_515066_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
WP_000266661.1|515116_516214_-	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_000455903.1|516216_516585_-	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
WP_023396063.1|516743_517994_+	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.5	5.4e-94
WP_023396062.1|517990_519274_+	insulinase family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	29.5	1.9e-17
WP_001227958.1|519315_520137_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023396061.1|520147_520693_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_023396060.1|520689_521517_+	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	32.9	2.8e-22
WP_000510412.1|521501_522341_+	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	32.6	1.1e-15
WP_000377893.1|522333_523128_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001078983.1|523186_524005_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_001249454.1|524004_524499_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_000727012.1|524592_525771_+	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_000268466.1|525994_526774_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_000808063.1|526852_527893_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_000973416.1|528138_528462_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_000841819.1|528901_529300_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000029860.1|529496_530417_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	80.7	1.3e-137
WP_000395739.1|530701_531337_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	71.5	4.4e-76
WP_000867616.1|531392_532691_+	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	66.6	1.2e-165
WP_000649971.1|532687_533350_+	ComF family protein	NA	NA	NA	NA	NA
WP_000599104.1|533429_533978_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_000715115.1|534113_536087_+	DHH family phosphoesterase	NA	NA	NA	NA	NA
WP_000864220.1|536083_536536_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_000852486.1|536579_537932_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	61.3	6.3e-149
WP_001278167.1|537933_538200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000698569.1|538288_539635_+|holin	choline binding-anchored murein hydrolase CbpD	holin	NA	NA	NA	NA
WP_000647692.1|539890_540181_+	thiamine-binding protein	NA	NA	NA	NA	NA
WP_001813866.1|540143_540902_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000754546.1|540940_541948_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000136224.1|541947_542676_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.2	1.0e-28
WP_001211273.1|542794_543253_+	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023396059.1|543254_545687_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	40.6	5.0e-128
WP_001024077.1|546316_546970_+	two-component system response regulator RR06	NA	NA	NA	NA	NA
WP_000594659.1|546966_548307_+	two-component system sensor histidine kinase HK06	NA	NA	NA	NA	NA
WP_000241935.1|548389_548917_+	isoprenylcysteine carboxyl methyltransferase family protein	NA	NA	NA	NA	NA
WP_023396057.1|549194_551411_+|holin	pneumococcal surface protein PspC, choline-binding form	holin	NA	NA	NA	NA
WP_111683441.1|551612_552878_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	92.6	2.5e-224
>prophage 6
NZ_LS483523	Streptococcus pneumoniae strain 4041STDY6836169 chromosome 1	2145551	878137	885469	2145551		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_000351907.1|878137_878866_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
WP_000105310.1|878884_879454_+	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
WP_001222228.1|879440_880163_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000821640.1|880162_880405_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	1.3e-17
WP_000858260.1|880629_881595_-	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000764306.1|881690_882443_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.9	5.6e-14
WP_001193668.1|882439_883396_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000777246.1|883385_884345_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	4.0e-57
WP_000167843.1|884767_885469_-	UDP-glucose 4-epimerase	NA	A0A2K9L1R4	Tupanvirus	35.1	1.7e-33
>prophage 7
NZ_LS483523	Streptococcus pneumoniae strain 4041STDY6836169 chromosome 1	2145551	1180377	1187128	2145551	protease	Streptococcus_phage(50.0%)	9	NA	NA
WP_069286974.1|1180377_1180884_+	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	41.9	3.3e-26
WP_000442276.1|1180883_1181054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000106346.1|1181085_1182318_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
WP_000422599.1|1182326_1182914_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_001140413.1|1182924_1183305_+	RidA family protein	NA	NA	NA	NA	NA
WP_000163033.1|1183356_1184247_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	3.9e-06
WP_001231086.1|1184243_1185221_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	100.0	1.2e-184
WP_000011310.1|1185217_1186129_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	99.3	9.8e-154
WP_000081011.1|1186162_1187128_-	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
>prophage 8
NZ_LS483523	Streptococcus pneumoniae strain 4041STDY6836169 chromosome 1	2145551	1234944	1285135	2145551	transposase,tRNA,holin	Streptococcus_phage(26.67%)	52	NA	NA
WP_023396358.1|1234944_1235952_+|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	36.4	1.9e-36
WP_001054562.1|1236026_1236227_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_000392851.1|1236261_1236978_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_000558554.1|1236991_1237486_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_000359036.1|1237485_1238022_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_023396357.1|1238036_1239542_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_000301210.1|1239557_1240436_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_000094360.1|1240521_1241928_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_000068048.1|1241938_1242358_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_000665619.1|1242402_1243416_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000435439.1|1243559_1244726_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_001065960.1|1244715_1245945_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_000120830.1|1246090_1246732_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000891772.1|1246741_1247371_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.3	1.2e-28
WP_000759188.1|1247383_1248220_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_069287061.1|1248497_1248845_-	thioredoxin	NA	NA	NA	NA	NA
WP_023396354.1|1248955_1250674_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	82.8	9.8e-272
WP_001811209.1|1250907_1251051_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_001811210.1|1251017_1251233_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000200307.1|1251219_1251753_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_001842111.1|1252092_1252347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023396353.1|1252457_1253537_+	MucBP domain-containing protein	NA	NA	NA	NA	NA
WP_023396352.1|1253494_1254172_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_000348122.1|1254395_1255265_+	aquaporin family protein	NA	NA	NA	NA	NA
WP_001040724.1|1256175_1257372_+	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.6	7.3e-32
WP_000850585.1|1258860_1259943_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.3	1.8e-37
WP_023396348.1|1259939_1260917_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_002206302.1|1261149_1261527_+|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
WP_050150846.1|1261761_1263153_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_023396346.1|1263266_1264109_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	1.7e-51
WP_000038736.1|1265334_1266252_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_023396345.1|1266463_1268500_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_000371285.1|1268541_1268799_+	DUF896 family protein	NA	NA	NA	NA	NA
WP_000673694.1|1268915_1270160_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	52.7	1.7e-55
WP_000915928.1|1270178_1270784_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	53.7	2.2e-53
WP_000175407.1|1270843_1271767_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_000036789.1|1272060_1273440_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000138517.1|1273591_1274467_+	pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA	NA	NA	NA	NA
WP_000689945.1|1274467_1275049_+	pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA	NA	NA	NA	NA
WP_001097983.1|1275069_1275717_-	hemolysin III family protein	NA	NA	NA	NA	NA
WP_000858730.1|1275713_1276160_-	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
WP_023396343.1|1276294_1276789_+	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.1	1.4e-42
WP_001170347.1|1276788_1277319_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	54.3	1.4e-46
WP_000889093.1|1277312_1277669_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_023396342.1|1277826_1278627_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000590986.1|1278626_1279370_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.0	1.6e-29
WP_000926599.1|1279447_1279672_+	DUF4059 family protein	NA	NA	NA	NA	NA
WP_023396341.1|1279737_1280649_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.5	8.5e-89
WP_000855753.1|1280687_1281416_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_001272941.1|1281460_1282072_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_000972917.1|1283670_1284498_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000290648.1|1284499_1285135_+|holin	1-alkyl-2-acetylglycerophosphocholine esterase	holin	A0A2K9L661	Tupanvirus	28.2	4.3e-07
>prophage 9
NZ_LS483523	Streptococcus pneumoniae strain 4041STDY6836169 chromosome 1	2145551	1348962	1412646	2145551	holin,protease	Bacillus_phage(33.33%)	59	NA	NA
WP_001061973.1|1348962_1349808_+|holin	phosphorylcholine transferase LicD	holin	NA	NA	NA	NA
WP_000225897.1|1349797_1350901_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_000446980.1|1350902_1351889_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000565082.1|1351904_1353338_+	O-antigen polysaccharide polymerase Wzy family protein	NA	NA	NA	NA	NA
WP_000461498.1|1353366_1354401_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000782676.1|1354600_1355338_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000216375.1|1355488_1356775_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_000692438.1|1356776_1357646_+	homoserine kinase	NA	NA	NA	NA	NA
WP_000818203.1|1357940_1358879_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_023396329.1|1358936_1360661_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.3	1.9e-44
WP_000828825.1|1360662_1362411_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.5	2.1e-48
WP_001858999.1|1362802_1364062_+	TRZ/ATZ family protein	NA	NA	NA	NA	NA
WP_001287278.1|1364311_1364812_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_001196960.1|1364887_1365256_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_001168348.1|1365442_1365613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000566537.1|1366190_1366571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000840778.1|1366583_1366817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_111683457.1|1366819_1367389_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000807141.1|1367623_1367761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172448732.1|1367939_1370549_+	lanthionine synthetase	NA	NA	NA	NA	NA
WP_001076602.1|1370581_1372522_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_001108415.1|1372518_1374126_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	22.4	6.0e-13
WP_000356590.1|1374140_1374881_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.8	7.0e-09
WP_000945311.1|1374883_1376203_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_000718654.1|1376335_1376473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000711943.1|1378943_1379114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000199575.1|1379609_1380956_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_029645906.1|1382658_1383177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001808393.1|1383233_1383518_-	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000401775.1|1383571_1384507_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_001162129.1|1384610_1385054_+	flavodoxin	NA	NA	NA	NA	NA
WP_000362435.1|1385169_1385436_+	chorismate mutase	NA	NA	NA	NA	NA
WP_000712098.1|1385432_1385807_+	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_000237416.1|1385800_1386130_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	37.8	6.3e-10
WP_001068669.1|1386248_1386596_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_001009001.1|1386875_1387874_-	SAP domain-containing protein	NA	NA	NA	NA	NA
WP_000023518.1|1387916_1388723_-	sugar-phosphatase	NA	NA	NA	NA	NA
WP_001003501.1|1388735_1390040_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	30.2	1.7e-26
WP_023396325.1|1390111_1390489_+	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_000402071.1|1390579_1390912_+	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_000863628.1|1390923_1392495_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_000808288.1|1392689_1393973_-	uracil transporter	NA	Q9KX94	Enterobacteria_phage	35.3	4.0e-60
WP_000802934.1|1394226_1394940_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_000219847.1|1395033_1395594_+	LemA family protein	NA	NA	NA	NA	NA
WP_000895725.1|1395595_1396495_+|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
WP_000558897.1|1396538_1398098_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	27.5	9.3e-11
WP_000389597.1|1398336_1398654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023396323.1|1398823_1399366_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000244451.1|1399365_1399995_+	endonuclease III	NA	NA	NA	NA	NA
WP_000850024.1|1400205_1400727_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_001293845.1|1400745_1401669_+	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	31.7	8.7e-25
WP_000166701.1|1401718_1402798_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.9	6.3e-59
WP_023396322.1|1403110_1406287_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_001199657.1|1406561_1407371_-|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	2.6e-09
WP_000811992.1|1407372_1408176_-|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	27.1	5.3e-10
WP_000835918.1|1408185_1409673_-	type IV teichoic acid flippase TacF	NA	NA	NA	NA	NA
WP_000638482.1|1410028_1410736_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000609888.1|1410740_1411763_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_023396321.1|1411779_1412646_+|holin	choline kinase LicA	holin	NA	NA	NA	NA
>prophage 10
NZ_LS483523	Streptococcus pneumoniae strain 4041STDY6836169 chromosome 1	2145551	1452737	1460911	2145551		Bacillus_phage(33.33%)	8	NA	NA
WP_000722076.1|1452737_1453442_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.8	2.8e-39
WP_000886213.1|1453434_1454784_+	cell wall metabolism sensor histidine kinase VicK	NA	W8CYF6	Bacillus_phage	34.0	3.0e-34
WP_001289493.1|1454785_1455595_+	MBL fold metallo-hydrolase	NA	A0A0C5AFC1	Paenibacillus_phage	39.0	1.8e-34
WP_000208079.1|1455685_1455928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023396301.1|1455929_1456184_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2P1N333	Gordonia_phage	37.3	1.1e-06
WP_023396300.1|1456230_1457007_+	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	43.3	6.0e-19
WP_000204727.1|1457262_1458249_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_001152989.1|1458442_1460911_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.5	2.7e-105
>prophage 11
NZ_LS483523	Streptococcus pneumoniae strain 4041STDY6836169 chromosome 1	2145551	1516135	1522777	2145551	transposase,integrase	Streptococcus_phage(33.33%)	8	1514116:1514129	1525503:1525516
1514116:1514129	attL	AACAGAATAAGGAA	NA	NA	NA	NA
WP_000201131.1|1516135_1516915_-	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	37.1	2.1e-24
WP_000201315.1|1516901_1517753_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_023396287.1|1517834_1519343_-|integrase	site-specific integrase	integrase	A0A1S5S9U4	Streptococcus_phage	29.9	8.4e-33
WP_000404196.1|1519418_1519652_-	hypothetical protein	NA	W6LM55	Streptococcus_phage	53.3	2.7e-15
WP_000286252.1|1519953_1520175_-	helix-turn-helix transcriptional regulator	NA	A0A1L2BY72	Clostridium_phage	47.5	3.9e-08
WP_001206385.1|1520431_1520905_-|transposase	IS200/IS605-like element ISSpn6 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	32.9	4.5e-17
WP_000642567.1|1521062_1521863_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000995575.1|1521859_1522777_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.7	6.9e-14
1525503:1525516	attR	TTCCTTATTCTGTT	NA	NA	NA	NA
>prophage 12
NZ_LS483523	Streptococcus pneumoniae strain 4041STDY6836169 chromosome 1	2145551	1732939	1742007	2145551		Streptococcus_phage(87.5%)	8	NA	NA
WP_001166873.1|1732939_1733818_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.7	3.9e-115
WP_000358228.1|1733820_1734138_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_000806714.1|1734177_1735068_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.7	4.9e-73
WP_000033396.1|1735064_1735703_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	67.6	1.1e-74
WP_000689693.1|1735922_1736720_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.6	4.2e-60
WP_050295167.1|1736723_1737986_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.3	1.9e-139
WP_073176995.1|1737995_1739126_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.7	8.5e-115
WP_000403195.1|1741119_1742007_-	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.0	1.3e-09
>prophage 13
NZ_LS483523	Streptococcus pneumoniae strain 4041STDY6836169 chromosome 1	2145551	2065550	2111591	2145551	transposase,tRNA,protease,bacteriocin	Moumouvirus(20.0%)	45	NA	NA
WP_000591091.1|2065550_2066894_-|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	35.5	2.0e-46
WP_000613666.1|2066975_2067860_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000539998.1|2067871_2068489_-	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_001118973.1|2068504_2070718_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000089980.1|2071402_2072269_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_000108186.1|2072332_2074582_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA	NA
WP_001819358.1|2074842_2075109_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000597993.1|2075836_2076838_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_023396182.1|2076905_2079311_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_000619950.1|2079387_2079897_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001813261.1|2079896_2080943_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	32.8	1.6e-27
WP_000151846.1|2081424_2082840_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	23.9	3.3e-23
WP_000120586.1|2082852_2084691_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000584538.1|2084708_2085548_-	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_000842022.1|2085847_2086030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001192126.1|2087476_2088280_-	Fic family protein	NA	NA	NA	NA	NA
WP_001814829.1|2088882_2090262_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_000516551.1|2090312_2090477_-	DNA cytosine methyltransferase	NA	NA	NA	NA	NA
WP_000032159.1|2090557_2093209_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	41.2	1.2e-151
WP_000550023.1|2093201_2093780_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_000124537.1|2093779_2094340_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_075575731.1|2094326_2094818_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_000038625.1|2095187_2095583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000119708.1|2095678_2095933_-	DUF1912 family protein	NA	NA	NA	NA	NA
WP_000752892.1|2095942_2097277_-	DUF438 domain-containing protein	NA	NA	NA	NA	NA
WP_000368737.1|2097276_2097510_-	DUF1858 domain-containing protein	NA	NA	NA	NA	NA
WP_001068159.1|2097969_2098152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000840389.1|2098153_2098933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001273601.1|2099211_2099562_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000039202.1|2099812_2102605_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	22.9	3.3e-19
WP_001041390.1|2102621_2102921_-	YlxQ-related RNA-binding protein	NA	NA	NA	NA	NA
WP_000857562.1|2102913_2103207_-	YlxR family protein	NA	NA	NA	NA	NA
WP_000032273.1|2103228_2104365_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_001810863.1|2104408_2104888_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_001266083.1|2105013_2105649_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_000363002.1|2105645_2106440_-	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_000394049.1|2106600_2107212_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001818347.1|2107362_2107596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000760510.1|2107637_2108327_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000877381.1|2108378_2108762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000346296.1|2109547_2109667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001820573.1|2109770_2109920_-|bacteriocin	bacteriocin-like peptide BlpO	bacteriocin	NA	NA	NA	NA
WP_001099492.1|2110163_2110367_-|bacteriocin	two-peptide bacteriocin subunit BlpN	bacteriocin	NA	NA	NA	NA
WP_000379877.1|2110382_2110637_-|bacteriocin	two-peptide bacteriocin subunit BlpM	bacteriocin	NA	NA	NA	NA
WP_100214365.1|2110786_2111591_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
