The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LS483438	Haemophilus influenzae strain NCTC12975 chromosome 1	1850791	1225776	1288472	1850791	tRNA,head,terminase,portal,capsid,tail,plate,integrase,protease	Mannheimia_phage(53.12%)	72	1222110:1222126	1291967:1291983
1222110:1222126	attL	AATCTACCGCACTTTTT	NA	NA	NA	NA
WP_011961904.1|1225776_1227747_+|tRNA	tRNA(Met) cytidine acetyltransferase	tRNA	NA	NA	NA	NA
WP_011272700.1|1227743_1227917_+	DUF5363 domain-containing protein	NA	NA	NA	NA	NA
WP_038441069.1|1228018_1231459_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_011272698.1|1231511_1232903_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	31.2	7.2e-23
WP_005694317.1|1233096_1233987_+	acetyl-CoA carboxylase, carboxyltransferase subunit beta	NA	NA	NA	NA	NA
WP_038441072.1|1233988_1235293_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_005689857.1|1235580_1236261_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA	NA
WP_005689855.1|1236418_1237495_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_005689853.1|1237549_1240192_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	32.3	2.1e-103
WP_005687300.1|1240357_1242121_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
WP_005687298.1|1242257_1242734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005687296.1|1242969_1243776_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005659609.1|1243827_1244529_+	hydroxyacylglutathione hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	29.1	3.3e-08
WP_005659606.1|1244572_1245433_-	SAM-dependent methyltransferase TehB	NA	NA	NA	NA	NA
WP_111738707.1|1245545_1247594_-|tRNA	methionine--tRNA ligase	tRNA	A0A2K9V939	Bandra_megavirus	29.3	2.2e-60
WP_042593952.1|1247744_1248857_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_042593953.1|1248903_1249566_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_042593954.1|1249679_1250354_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA	NA
WP_154231901.1|1250425_1250581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011272688.1|1251062_1252073_-|portal	phage portal protein	portal	Q19UT6	Mannheimia_phage	60.4	1.8e-116
WP_038441084.1|1252082_1253864_-|terminase	terminase	terminase	A0A0M3LRV4	Mannheimia_phage	65.4	5.0e-218
WP_011272686.1|1254028_1254844_+|capsid	GPO family capsid scaffolding protein	capsid	A0A0M3LNM2	Mannheimia_phage	60.5	6.9e-66
WP_042593955.1|1254864_1255914_+|capsid	phage major capsid protein, P2 family	capsid	Q19UT3	Mannheimia_phage	51.3	1.7e-88
WP_011272685.1|1255925_1256576_+|terminase	terminase	terminase	Q19US0	Mannheimia_phage	46.0	4.1e-45
WP_005668469.1|1256869_1257376_+|head	head completion/stabilization protein	head	A0A0M3LNL8	Mannheimia_phage	51.0	2.8e-33
WP_005668467.1|1257375_1257585_+|tail	tail protein X	tail	NA	NA	NA	NA
WP_005668464.1|1257586_1257808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005668462.1|1257800_1258319_+	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.6	9.5e-37
WP_011272684.1|1258303_1258654_+	chemotaxis protein	NA	NA	NA	NA	NA
WP_005672208.1|1258828_1259044_+	TraR/DksA family transcriptional regulator	NA	A0A0M3LS11	Mannheimia_phage	47.9	1.1e-10
WP_038441087.1|1259040_1259304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038441089.1|1259269_1259740_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	45.3	7.3e-28
WP_011272680.1|1259739_1260201_+	phage virion morphogenesis protein	NA	A0A2H4J927	uncultured_Caudovirales_phage	48.2	5.7e-25
WP_005653079.1|1260201_1260549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011272679.1|1260652_1260835_+	phage virion morphogenesis protein	NA	Q19UR2	Mannheimia_phage	47.8	8.8e-06
WP_011272678.1|1260845_1261184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075913143.1|1261259_1261433_+	phage virion morphogenesis protein	NA	Q19UR2	Mannheimia_phage	53.3	3.2e-05
WP_042593957.1|1261410_1261671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172455783.1|1264623_1264791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011272674.1|1265316_1265874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005653088.1|1265882_1266311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011272673.1|1266414_1267014_+|plate	phage baseplate assembly protein V	plate	A0A0M3LPY9	Mannheimia_phage	66.0	4.2e-44
WP_005633786.1|1267015_1267354_+	GPW/gp25 family protein	NA	Q19UQ6	Mannheimia_phage	56.6	3.4e-19
WP_011272672.1|1267350_1268265_+|plate	baseplate J/gp47 family protein	plate	Q19UQ5	Mannheimia_phage	59.5	5.1e-94
WP_011272671.1|1268254_1268791_+|tail	phage tail protein I	tail	M1T2R2	Escherichia_phage	52.5	1.6e-50
WP_105882589.1|1268799_1271322_+|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	68.7	1.8e-253
WP_042593887.1|1271333_1271933_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	89.5	7.8e-91
WP_042593888.1|1272191_1273376_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A1S6KZY7	Salmonella_phage	48.2	2.3e-102
WP_005655097.1|1273379_1273886_+|tail	phage major tail tube protein	tail	Q19UP8	Mannheimia_phage	59.5	5.4e-53
WP_005655095.1|1273951_1274251_+|tail	phage tail assembly protein	tail	E5E3Q1	Burkholderia_phage	42.9	1.2e-12
WP_005633772.1|1274250_1274397_+|tail	GpE family phage tail protein	tail	E5E3Q0	Burkholderia_phage	65.0	2.2e-07
WP_162877721.1|1274564_1274726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042593889.1|1274725_1275163_+|tail	phage tail protein	tail	A0A0M3LQ18	Mannheimia_phage	57.3	9.1e-41
WP_042593890.1|1275162_1276383_+	phage late control D family protein	NA	R9QBT3	Mannheimia_phage	57.5	2.7e-122
WP_005672606.1|1276400_1276790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042593891.1|1276849_1278610_-	DUF2326 domain-containing protein	NA	NA	NA	NA	NA
WP_042593892.1|1278854_1279616_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_089503506.1|1279620_1280271_-	helix-turn-helix domain-containing protein	NA	Q76H56	Enterobacteria_phage	36.1	5.8e-23
WP_042593894.1|1280441_1280861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005642278.1|1280923_1281166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042593895.1|1281203_1281497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005633752.1|1281577_1281733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042593896.1|1281949_1282306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042593897.1|1282498_1282786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042593898.1|1282877_1283141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042593899.1|1283158_1283539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005663359.1|1283542_1283785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005663355.1|1283912_1284221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042599665.1|1284230_1286417_+	replication endonuclease	NA	Q94N00	Haemophilus_virus	42.7	5.4e-166
WP_042593902.1|1286471_1286993_+	hypothetical protein	NA	A0A0M3LTD8	Mannheimia_phage	42.4	4.3e-29
WP_005652916.1|1286992_1287160_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_042593903.1|1287140_1288472_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A1B5FPC6	Escherichia_phage	33.0	9.3e-44
1291967:1291983	attR	AAAAAGTGCGGTAGATT	NA	NA	NA	NA
>prophage 2
NZ_LS483438	Haemophilus influenzae strain NCTC12975 chromosome 1	1850791	1373453	1385486	1850791	tRNA	Acinetobacter_phage(42.86%)	11	NA	NA
WP_074031221.1|1373453_1374458_-	phosphate ABC transporter substrate-binding protein PstS	NA	A0A222YW41	Synechococcus_phage	40.5	1.2e-51
WP_005650594.1|1374975_1375464_+	non-heme ferritin	NA	NA	NA	NA	NA
WP_005656740.1|1375479_1375977_+	non-heme ferritin	NA	NA	NA	NA	NA
WP_005688459.1|1376205_1376970_+	glycosyltransferase	NA	A7IW34	Paramecium_bursaria_Chlorella_virus	29.1	1.5e-14
WP_042594028.1|1377075_1378632_+	anthranilate synthase component I	NA	A0A0B5J984	Pandoravirus	32.8	3.1e-22
WP_042603067.1|1378644_1379226_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	39.4	4.5e-35
WP_005666933.1|1379274_1379661_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_042594026.1|1379713_1380715_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	35.3	8.8e-47
WP_042594055.1|1380755_1382186_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	38.0	1.2e-33
WP_042594025.1|1382315_1382588_+	hydrogenase maturation factor HybG	NA	NA	NA	NA	NA
WP_042594024.1|1382621_1385486_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.4	1.0e-148
>prophage 3
NZ_LS483438	Haemophilus influenzae strain NCTC12975 chromosome 1	1850791	1394862	1426521	1850791	integrase,terminase,capsid	Haemophilus_phage(22.58%)	46	1416937:1416953	1432730:1432746
WP_005650554.1|1394862_1395039_-	DUF2213 domain-containing protein	NA	Q7Y5U2	Haemophilus_phage	93.1	8.5e-22
WP_075913359.1|1395179_1396490_-|capsid	minor capsid protein	capsid	Q7Y5U5	Haemophilus_phage	78.3	5.3e-108
WP_011272621.1|1396389_1397724_-	DUF1073 domain-containing protein	NA	Q7Y5U6	Haemophilus_phage	84.2	2.1e-213
WP_011272619.1|1399055_1399568_-|terminase	terminase small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	39.2	1.0e-19
WP_005643377.1|1399645_1399897_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5NR91	Burkholderia_phage	52.9	9.9e-16
WP_042594017.1|1399880_1400228_+	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	56.1	1.2e-22
WP_042594016.1|1400229_1400511_-	hypothetical protein	NA	Q776X1	Haemophilus_phage	70.0	8.8e-29
WP_042594015.1|1400422_1400758_-	DUF2570 family protein	NA	Q7Y5U9	Haemophilus_phage	52.1	9.8e-19
WP_042594014.1|1400730_1401273_-	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	52.0	3.1e-46
WP_005688862.1|1401253_1401505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005688860.1|1401675_1401837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005688858.1|1401964_1402477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005688856.1|1402885_1403707_-	NYN domain-containing protein	NA	A0A0R6PGY5	Moraxella_phage	40.9	3.1e-34
WP_042594013.1|1403908_1404427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042594012.1|1404466_1404832_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA	NA
WP_042594011.1|1404833_1405421_-	recombination protein NinG	NA	A0A2I7RAC0	Vibrio_phage	48.0	8.3e-37
WP_042594054.1|1405513_1405930_-	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	86.1	1.9e-64
WP_005633909.1|1405966_1406191_-	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
WP_042599516.1|1406187_1406811_-	replication P	NA	D0UIL4	Aggregatibacter_phage	42.2	6.9e-34
WP_042593362.1|1406825_1407602_-	replication protein	NA	D0UIL5	Aggregatibacter_phage	62.6	1.3e-26
WP_042593361.1|1407603_1407846_-	hypothetical protein	NA	M4NJW2	Sulfitobacter_phage	41.4	4.0e-06
WP_005662003.1|1408446_1408674_-	helix-turn-helix domain-containing protein	NA	D0UIL8	Aggregatibacter_phage	50.8	1.5e-10
WP_042593359.1|1408808_1409714_+	helix-turn-helix transcriptional regulator	NA	B6SCU0	Bacteriophage	40.8	6.8e-38
WP_042593358.1|1409729_1410824_+	DUF262 domain-containing protein	NA	A0A0R6PKN1	Moraxella_phage	36.2	2.0e-60
WP_042593357.1|1410823_1411483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005662013.1|1411439_1412471_-	DNA cytosine methyltransferase	NA	A0A0R6PG08	Moraxella_phage	66.4	2.8e-128
WP_158672356.1|1413146_1413317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042593356.1|1413481_1414312_+	KilA-N domain-containing protein	NA	Q4ZC41	Staphylococcus_virus	52.2	3.4e-76
WP_042593355.1|1414816_1415434_+	KilA-N domain-containing protein	NA	A0A0P0ZCS0	Stx2-converting_phage	46.4	4.0e-18
WP_042599368.1|1415523_1415874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042593270.1|1415870_1416164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042593269.1|1416175_1417087_+	recombinase RecT	NA	A0A0M3LNU3	Mannheimia_phage	70.7	2.4e-115
1416937:1416953	attL	GGTTGTTGATGAAGCCA	NA	NA	NA	NA
WP_080317036.1|1417431_1418043_+	Bro-N domain-containing protein	NA	Q7Y5X0	Haemophilus_phage	60.6	5.8e-33
WP_042602780.1|1418253_1418898_+	translocation protein TolB precursor	NA	A0A0M3LP90	Mannheimia_phage	71.4	6.8e-85
WP_042602779.1|1418897_1419332_+	single-stranded DNA-binding protein	NA	A0A059WRL7	Vibrio_phage	36.2	1.3e-18
WP_111738709.1|1419394_1420687_+	hypothetical protein	NA	A0A0U3TGV3	Pseudomonas_phage	61.9	8.8e-07
WP_038440649.1|1420811_1421708_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	43.7	8.4e-57
WP_005668254.1|1421704_1421950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042593417.1|1421946_1422306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005668260.1|1423103_1423751_+	hypothetical protein	NA	A0A0M3LNU4	Mannheimia_phage	40.0	1.0e-08
WP_042593416.1|1423754_1424171_+	hypothetical protein	NA	W0B4E9	Acinetobacter_phage	39.2	3.5e-05
WP_042593415.1|1424250_1424739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042593414.1|1424728_1425052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042593413.1|1425044_1425317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005650488.1|1425358_1425562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105873124.1|1425633_1426521_-|integrase	site-specific integrase	integrase	A0A0M3LQN1	Mannheimia_phage	54.2	8.0e-84
1432730:1432746	attR	TGGCTTCATCAACAACC	NA	NA	NA	NA
>prophage 4
NZ_LS483438	Haemophilus influenzae strain NCTC12975 chromosome 1	1850791	1664198	1672707	1850791		uncultured_Caudovirales_phage(16.67%)	8	NA	NA
WP_011272434.1|1664198_1664882_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	2.3e-54
WP_011272433.1|1664874_1665300_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.0	2.3e-20
WP_005686506.1|1665300_1665936_+	7-carboxy-7-deazaguanine synthase QueE	NA	S4TZT1	uncultured_phage	30.3	8.7e-16
WP_042593871.1|1666545_1668726_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.7	3.9e-116
WP_005647473.1|1668815_1669817_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_005653671.1|1669831_1670719_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_005694258.1|1670728_1671721_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.0e-14
WP_038441344.1|1671723_1672707_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	1.4e-20
