assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_900475985.1_47297_C01	NZ_LS483437	Streptococcus pyogenes strain NCTC13751 chromosome 1	1	118266-118455	1	CRISPRCasFinder	no		cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas5,DEDDh,csa3	Orphan	AAGAAGTCCCAGAAGTTCCAAGCGAGAGCTTAGAACCTGCGCTTCC	46	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas5,DEDDh,csa3	NA,NA|222aa|down_5|NZ_LS483437.1_130282_130948_-	NA|257aa|up_9|NZ_LS483437.1_108533_109304_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|356aa|up_8|NZ_LS483437.1_109351_110419_-	TIGR03107, Glutamyl_aminopeptidase, glutamyl aminopeptidase	NA|98aa|up_7|NZ_LS483437.1_110874_111168_+	pfam15513, DUF4651, Domain of unknown function (DUF4651)	NA|106aa|up_6|NZ_LS483437.1_111164_111482_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|209aa|up_5|NZ_LS483437.1_111499_112126_+	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain	NA|132aa|up_4|NZ_LS483437.1_112276_112672_+	PRK07274, PRK07274, single-stranded DNA-binding protein; Provisional	NA|214aa|up_3|NZ_LS483437.1_112931_113573_-	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]	NA|326aa|up_2|NZ_LS483437.1_113592_114570_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|291aa|up_1|NZ_LS483437.1_114556_115429_-	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|498aa|up_0|NZ_LS483437.1_115575_117069_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|570aa|down_0|NZ_LS483437.1_120455_122165_+	TIGR04226, Fimbrial_subunit_type_2, fimbrial isopeptide formation D2 domain	NA|311aa|down_1|NZ_LS483437.1_122247_123180_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|292aa|down_2|NZ_LS483437.1_123157_124033_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|286aa|down_3|NZ_LS483437.1_124046_124904_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|1711aa|down_4|NZ_LS483437.1_124973_130106_+	pfam17961, Big_8, Bacterial Ig domain	NA|222aa|down_5|NZ_LS483437.1_130282_130948_-	NA	NA|469aa|down_6|NZ_LS483437.1_131207_132614_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|304aa|down_7|NZ_LS483437.1_132681_133593_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|395aa|down_8|NZ_LS483437.1_133713_134898_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|220aa|down_9|NZ_LS483437.1_134909_135569_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
GCF_900475985.1_47297_C01	NZ_LS483437	Streptococcus pyogenes strain NCTC13751 chromosome 1	2	1035393-1035494	2	CRISPRCasFinder	no		cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas5,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas5,DEDDh,csa3	NA,NA|262aa|down_6|NZ_LS483437.1_1043324_1044110_+	NA|83aa|up_9|NZ_LS483437.1_1023109_1023358_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|NZ_LS483437.1_1023720_1026039_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|NZ_LS483437.1_1026567_1027890_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|NZ_LS483437.1_1028009_1029245_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|NZ_LS483437.1_1029614_1030388_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NZ_LS483437.1_1030757_1031594_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NZ_LS483437.1_1031609_1032239_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NZ_LS483437.1_1032248_1032890_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NZ_LS483437.1_1032996_1033332_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NZ_LS483437.1_1033527_1035342_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NZ_LS483437.1_1035517_1036075_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NZ_LS483437.1_1036292_1037795_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NZ_LS483437.1_1037857_1038871_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NZ_LS483437.1_1038950_1042061_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NZ_LS483437.1_1042245_1042617_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_LS483437.1_1042616_1043315_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NZ_LS483437.1_1043324_1044110_+	NA	NA|205aa|down_7|NZ_LS483437.1_1044240_1044855_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|207aa|down_8|NZ_LS483437.1_1045595_1046216_+	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|755aa|down_9|NZ_LS483437.1_1046472_1048737_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
GCF_900475985.1_47297_C01	NZ_LS483437	Streptococcus pyogenes strain NCTC13751 chromosome 1	3	1328135-1328363	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas5,cas3	cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas5,DEDDh,csa3	Unclear	ATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC,TTTCAATCCACTCACCCATGAAGGGTGAGAC	32,32,31	0	0	NA	NA	I-C:I-C:I-C	3,3,3	3	Unclear	cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas5,DEDDh,csa3	NA|50aa|up_9|NZ_LS483437.1_1320902_1321052_-,NA|64aa|up_7|NZ_LS483437.1_1321823_1322015_-,NA|174aa|up_4|NZ_LS483437.1_1323574_1324096_+,NA	NA|50aa|up_9|NZ_LS483437.1_1320902_1321052_-	NA	NA|243aa|up_8|NZ_LS483437.1_1321084_1321813_-	COG3561, COG3561, Phage anti-repressor protein [Transcription]	NA|64aa|up_7|NZ_LS483437.1_1321823_1322015_-	NA	NA|120aa|up_6|NZ_LS483437.1_1322810_1323170_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|127aa|up_5|NZ_LS483437.1_1323183_1323564_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|174aa|up_4|NZ_LS483437.1_1323574_1324096_+	NA	NA|385aa|up_3|NZ_LS483437.1_1324214_1325369_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|369aa|up_2|NZ_LS483437.1_1325479_1326586_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NZ_LS483437.1_1326628_1327252_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NZ_LS483437.1_1327264_1327975_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_LS483437.1_1328511_1328805_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|NZ_LS483437.1_1328815_1329841_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|NZ_LS483437.1_1329837_1330512_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|NZ_LS483437.1_1330513_1331362_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas5|243aa|down_4|NZ_LS483437.1_1333254_1333983_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_5|NZ_LS483437.1_1334115_1336524_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_6|NZ_LS483437.1_1336677_1339326_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_7|NZ_LS483437.1_1339327_1339891_-	pfam13238, AAA_18, AAA domain	NA|132aa|down_8|NZ_LS483437.1_1340492_1340888_-	PRK07758, PRK07758, hypothetical protein; Provisional	NA|85aa|down_9|NZ_LS483437.1_1340905_1341160_-	pfam08930, DUF1912, Domain of unknown function (DUF1912)
